# command:# Seed set to 1148907462 # command:# Prefix for input files set to # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 487909 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 8311 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:CPU_time= 25.4581 sec, elapsed time= 36.8848 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0287 numbered 1 through 199 Created new target T0287 from T0287.a2m # command:# command:# No conformations to remove in PopConform # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:# Prefix for input files set to # command:# reading script from file try5.costfcn # reading predictions from T0287.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0287.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # reading script from file T0287.dssp-ehl2.constraints # HelixConstraint # Added 13 helix constraints for (T0287)M5 through (T0287)A13 # HelixConstraint # Added 19 helix constraints for (T0287)K18 through (T0287)E28 # HelixConstraint # Added 56 helix constraints for (T0287)E36 through (T0287)M54 # HelixConstraint # Added 56 helix constraints for (T0287)A60 through (T0287)S78 # HelixConstraint # Added 66 helix constraints for (T0287)K83 through (T0287)A103 # StrandConstraint # Added 1 Strand constraints for (T0287)L154 through (T0287)V156 # HelixConstraint # Added 41 helix constraints for (T0287)K169 through (T0287)K184 # HelixConstraint # Added 7 helix constraints for (T0287)L187 through (T0287)E193 # reading script from file T0287.t06.str2.constraints # HelixConstraint # Added 7 helix constraints for (T0287)R6 through (T0287)I12 # HelixConstraint # Added 19 helix constraints for (T0287)K18 through (T0287)E28 # HelixConstraint # Added 61 helix constraints for (T0287)E36 through (T0287)H55 # HelixConstraint # Added 56 helix constraints for (T0287)G59 through (T0287)S78 # HelixConstraint # Added 61 helix constraints for (T0287)F84 through (T0287)A103 # StrandConstraint # Added 2 Strand constraints for (T0287)I129 through (T0287)K132 # StrandConstraint Warning: can't construct Strand constraints for (T0287)E143 and (T0287)L144 as there are no CA atoms with usable spacing # StrandConstraint # Added 6 Strand constraints for (T0287)L152 through (T0287)M157 # HelixConstraint # Added 31 helix constraints for (T0287)T170 through (T0287)M183 # HelixConstraint # Added 9 helix constraints for (T0287)L187 through (T0287)K194 # reading script from file T0287.t06.dssp-ebghstl.constraints # HelixConstraint # Added 13 helix constraints for (T0287)M5 through (T0287)A13 # HelixConstraint # Added 13 helix constraints for (T0287)K18 through (T0287)L26 # HelixConstraint # Added 66 helix constraints for (T0287)D35 through (T0287)H55 # HelixConstraint # Added 56 helix constraints for (T0287)A60 through (T0287)S78 # HelixConstraint # Added 71 helix constraints for (T0287)K83 through (T0287)E104 # HelixConstraint # Added 1 helix constraints for (T0287)I117 through (T0287)L118 # StrandConstraint # Added 6 Strand constraints for (T0287)I129 through (T0287)S134 # StrandConstraint # Added 4 Strand constraints for (T0287)K153 through (T0287)M157 # HelixConstraint # Added 31 helix constraints for (T0287)I171 through (T0287)K184 # HelixConstraint # Added 9 helix constraints for (T0287)L187 through (T0287)K194 # reading script from file T0287.t06.stride-ebghtl.constraints # HelixConstraint # Added 9 helix constraints for (T0287)M5 through (T0287)I12 # HelixConstraint # Added 22 helix constraints for (T0287)K18 through (T0287)N29 # HelixConstraint # Added 66 helix constraints for (T0287)E36 through (T0287)T56 # HelixConstraint # Added 62 helix constraints for (T0287)K58 through (T0287)S78 # HelixConstraint # Added 71 helix constraints for (T0287)K83 through (T0287)E104 # StrandConstraint Warning: can't construct Strand constraints for (T0287)F131 and (T0287)K132 as there are no CA atoms with usable spacing # StrandConstraint # Added 4 Strand constraints for (T0287)K153 through (T0287)M157 # HelixConstraint # Added 2 helix constraints for (T0287)T170 through (T0287)Y174 # HelixConstraint # Added 13 helix constraints for (T0287)D176 through (T0287)K184 # HelixConstraint # Added 9 helix constraints for (T0287)L187 through (T0287)K194 # reading script from file T0287.t06.bys.constraints # HelixConstraint # Added 9 helix constraints for (T0287)M5 through (T0287)I12 # HelixConstraint # Added 19 helix constraints for (T0287)K18 through (T0287)E28 # HelixConstraint # Added 56 helix constraints for (T0287)E36 through (T0287)M54 # HelixConstraint # Added 56 helix constraints for (T0287)A60 through (T0287)S78 # HelixConstraint # Added 16 helix constraints for (T0287)D82 through (T0287)L91 # HelixConstraint # Added 19 helix constraints for (T0287)S93 through (T0287)A103 # HelixConstraint # Added 1 helix constraints for (T0287)R115 through (T0287)S116 # StrandConstraint # Added 10 Strand constraints for (T0287)K127 through (T0287)S134 # HelixConstraint # Added 1 helix constraints for (T0287)D139 through (T0287)Q141 # StrandConstraint # Added 8 Strand constraints for (T0287)L152 through (T0287)T158 # HelixConstraint # Added 1 helix constraints for (T0287)E160 through (T0287)E161 # HelixConstraint # Added 5 helix constraints for (T0287)K169 through (T0287)Y174 # HelixConstraint # Added 13 helix constraints for (T0287)D176 through (T0287)K184 # HelixConstraint # Added 7 helix constraints for (T0287)L187 through (T0287)E193 # reading script from file T0287.449a_45.rr.constraints # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.694746 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.653715 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.652969 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.649162 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.648443 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.643246 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.642958 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.639112 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.633001 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.630877 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L22.CB) [> -10 = 7 < 14] w=0.629967 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.629085 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L22.CB) [> -10 = 7 < 14] w=0.627641 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.625495 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.624744 # Constraint # added constraint: constraint((T0287)L90.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.624324 # Constraint # added constraint: constraint((T0287)L90.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.619542 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.615865 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.615827 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.612559 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.610222 # Constraint # added constraint: constraint((T0287)L91.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.608697 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.608294 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.607532 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.605849 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.605832 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.604035 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.603403 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.602896 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.602787 # Constraint # added constraint: constraint((T0287)I171.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.599122 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.598185 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.598147 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.598049 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.59745 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.59715 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.59685 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.595527 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.594149 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.593974 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.593931 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.592215 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.591567 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.590979 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.590646 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.589328 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)I142.CB) [> -10 = 7 < 14] w=0.588637 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.588097 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.587057 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.586322 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)L22.CB) [> -10 = 7 < 14] w=0.586169 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.583767 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.583206 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.582198 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.579655 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.579595 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.579584 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.57947 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.579464 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.578947 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.577776 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.577264 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.57655 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.576452 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.575978 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.575526 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.575183 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.575167 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.572628 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.571566 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.570635 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.57039 # Constraint # added constraint: constraint((T0287)I171.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.56972 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.568707 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.568603 # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.568309 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.567601 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.56741 # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.566691 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.566446 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.56607 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.565923 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)M130.CB) [> -10 = 7 < 14] w=0.564921 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.564627 # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.564409 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.563783 # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.563603 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)A101.CB) [> -10 = 7 < 14] w=0.562824 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.560624 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.560215 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.55967 # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.557699 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.557252 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.555596 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.555585 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.555226 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.554648 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.554376 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.553984 # Constraint # added constraint: constraint((T0287)I44.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.55351 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.552731 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.552709 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.552432 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.552286 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.552209 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.551453 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.550882 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.550814 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.549114 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.548465 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.548465 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.548247 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.547724 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.547376 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.547046 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.545942 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L26.CB) [> -10 = 7 < 14] w=0.545821 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.545729 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)H100.CB) [> -10 = 7 < 14] w=0.544538 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.543932 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.54384 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.542843 # Constraint # added constraint: constraint((T0287)L168.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.542625 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.541898 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)V64.CB) [> -10 = 7 < 14] w=0.541196 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.540842 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.54075 # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.540111 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.539317 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.539113 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L26.CB) [> -10 = 7 < 14] w=0.539109 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.538847 # Constraint # added constraint: constraint((T0287)V178.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.538527 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.538126 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.538048 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.538019 # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.537443 # Constraint # added constraint: constraint((T0287)F164.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.536832 # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.536721 # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)M96.CB) [> -10 = 7 < 14] w=0.534726 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.534362 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.534333 # Constraint # added constraint: constraint((T0287)M54.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.533307 # Constraint # added constraint: constraint((T0287)L152.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.532382 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.532212 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.532019 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.531873 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.531558 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.531442 # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.530953 # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.530924 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)F110.CB) [> -10 = 7 < 14] w=0.529649 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.528681 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.527691 # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.527025 # Constraint # added constraint: constraint((T0287)L168.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.526876 # Constraint # added constraint: constraint((T0287)L109.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.526354 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.526106 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.526013 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.525232 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.524709 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.524588 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.524038 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.523394 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.522673 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.522376 # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.521749 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.521006 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.520709 # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.520456 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.520308 # Constraint # added constraint: constraint((T0287)L152.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.520093 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.519246 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.519169 # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.518745 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.518674 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.518525 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.517111 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)H100.CB) [> -10 = 7 < 14] w=0.516979 # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.515802 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.515164 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.515054 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.514174 # Constraint # added constraint: constraint((T0287)L154.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.512991 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)F113.CB) [> -10 = 7 < 14] w=0.512936 # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.512644 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.512606 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.512182 # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.5115 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.511165 # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.511079 # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.509479 # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.509286 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.508308 # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.507604 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)L26.CB) [> -10 = 7 < 14] w=0.507599 # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)A101.CB) [> -10 = 7 < 14] w=0.506257 # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.506221 # Constraint # added constraint: constraint((T0287)V162.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.50611 # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.505492 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.50531 # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.504778 # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.504459 # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.503309 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.500963 # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.50031 # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.500239 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.499626 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.499271 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.498978 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)F113.CB) [> -10 = 7 < 14] w=0.498968 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.498608 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.497499 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.497488 # Constraint # added constraint: bonus constraint((T0287)L168.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.496794 # Constraint # added constraint: bonus constraint((T0287)F164.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.496723 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.496703 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.496622 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.496475 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L152.CB) [> -10 = 7 < 14] w=0.495276 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.495223 # Constraint # added constraint: bonus constraint((T0287)V162.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.494587 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.493615 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.493064 # Constraint # added constraint: bonus constraint((T0287)I117.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.492446 # Constraint # added constraint: bonus constraint((T0287)V156.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.49217 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.491175 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.48865 # Constraint # added constraint: bonus constraint((T0287)L61.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.487457 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.485526 # Constraint # added constraint: bonus constraint((T0287)F155.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.485262 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.483889 # Constraint # added constraint: bonus constraint((T0287)V75.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.483181 # Constraint # added constraint: bonus constraint((T0287)F84.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.483091 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.482635 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.481586 # Constraint # added constraint: bonus constraint((T0287)M11.CB, (T0287)I23.CB) [> -10 = 7 < 14] w=0.481466 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.481082 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.48044 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.480357 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.479529 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.47894 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)I79.CB) [> -10 = 7 < 14] w=0.478827 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L65.CB) [> -10 = 7 < 14] w=0.478642 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.478494 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.477777 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.477628 # Constraint # added constraint: bonus constraint((T0287)Y88.CB, (T0287)A101.CB) [> -10 = 7 < 14] w=0.477574 # Constraint # added constraint: bonus constraint((T0287)L61.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.477484 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.477024 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.476289 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.475689 # Constraint # added constraint: bonus constraint((T0287)M54.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.475288 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.475099 # Constraint # added constraint: bonus constraint((T0287)I171.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.474923 # Constraint # added constraint: bonus constraint((T0287)F164.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.473679 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.473138 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.472732 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)F51.CB) [> -10 = 7 < 14] w=0.4727 # Constraint # added constraint: bonus constraint((T0287)V156.CB, (T0287)L168.CB) [> -10 = 7 < 14] w=0.472168 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.471267 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.470753 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.470653 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.470613 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.47032 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)M96.CB) [> -10 = 7 < 14] w=0.469355 # Constraint # added constraint: bonus constraint((T0287)I171.CB, (T0287)M191.CB) [> -10 = 7 < 14] w=0.469242 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.468132 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.468132 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.467839 # Constraint # added constraint: bonus constraint((T0287)I142.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.467825 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)I79.CB) [> -10 = 7 < 14] w=0.467822 # Constraint # added constraint: bonus constraint((T0287)F108.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.46769 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.467162 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.46703 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.466511 # Constraint # added constraint: bonus constraint((T0287)V162.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.466509 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.46638 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.466309 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.466274 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.466016 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)L109.CB) [> -10 = 7 < 14] w=0.465946 # Constraint # added constraint: bonus constraint((T0287)M47.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.465705 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.465245 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)F110.CB) [> -10 = 7 < 14] w=0.465166 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.464756 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.464515 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.464415 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.464117 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.464049 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)Y88.CB) [> -10 = 7 < 14] w=0.463721 # Constraint # added constraint: bonus constraint((T0287)L118.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.463058 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.462642 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.462616 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.462419 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.462293 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)F50.CB) [> -10 = 7 < 14] w=0.462235 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L152.CB) [> -10 = 7 < 14] w=0.462217 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)F164.CB) [> -10 = 7 < 14] w=0.462082 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)A74.CB) [> -10 = 7 < 14] w=0.462059 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I76.CB) [> -10 = 7 < 14] w=0.462012 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.461681 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)V75.CB) [> -10 = 7 < 14] w=0.461522 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.46128 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.461128 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)L152.CB) [> -10 = 7 < 14] w=0.460666 # Constraint # added constraint: bonus constraint((T0287)I142.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.460438 # Constraint # added constraint: bonus constraint((T0287)L144.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.458474 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.458441 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.458333 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.458219 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)I117.CB) [> -10 = 7 < 14] w=0.458002 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.457296 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.456775 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.456699 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.455126 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.454361 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)F113.CB) [> -10 = 7 < 14] w=0.454187 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.453677 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.453357 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)L144.CB) [> -10 = 7 < 14] w=0.453221 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.453047 # Constraint # added constraint: bonus constraint((T0287)M54.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.452402 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L109.CB) [> -10 = 7 < 14] w=0.452364 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.451995 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.45066 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.450627 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.450611 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L31.CB) [> -10 = 7 < 14] w=0.449774 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)H100.CB) [> -10 = 7 < 14] w=0.448537 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.448358 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.448158 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.44741 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.446954 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.44655 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.446363 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.445776 # Constraint # added constraint: bonus constraint((T0287)F110.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.445155 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.445002 # Constraint # added constraint: bonus constraint((T0287)L154.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.444441 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.444394 # Constraint # added constraint: bonus constraint((T0287)L122.CB, (T0287)L144.CB) [> -10 = 7 < 14] w=0.444011 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.443246 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.443169 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)M47.CB) [> -10 = 7 < 14] w=0.442459 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.442013 # Constraint # added constraint: bonus constraint((T0287)V64.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.441753 # Constraint # added constraint: bonus constraint((T0287)L144.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.441745 # Constraint # added constraint: bonus constraint((T0287)I135.CB, (T0287)L151.CB) [> -10 = 7 < 14] w=0.441061 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.440902 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.440676 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.4406 # Constraint # added constraint: bonus constraint((T0287)L31.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.439834 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)I41.CB) [> -10 = 7 < 14] w=0.439772 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)M191.CB) [> -10 = 7 < 14] w=0.43894 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)Y72.CB) [> -10 = 7 < 14] w=0.437066 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)M47.CB) [> -10 = 7 < 14] w=0.436623 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.436472 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.435724 # Constraint # added constraint: bonus constraint((T0287)F84.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.43568 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.43506 # Constraint # added constraint: bonus constraint((T0287)L152.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.433164 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.433112 # Constraint # added constraint: bonus constraint((T0287)M69.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.43263 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)M47.CB) [> -10 = 7 < 14] w=0.432196 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.432165 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.431424 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.431069 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.430539 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.430535 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)F131.CB) [> -10 = 7 < 14] w=0.430452 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.430346 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.429921 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.429829 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.429536 # Constraint # added constraint: bonus constraint((T0287)F155.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.429338 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)F121.CB) [> -10 = 7 < 14] w=0.428637 # Constraint # added constraint: bonus constraint((T0287)L91.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.428541 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.428348 # Constraint # added constraint: bonus constraint((T0287)I79.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.427366 # Constraint # added constraint: bonus constraint((T0287)I44.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.427077 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.426279 # Constraint # added constraint: bonus constraint((T0287)L118.CB, (T0287)I129.CB) [> -10 = 7 < 14] w=0.425841 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.425401 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.425309 # Constraint # added constraint: bonus constraint((T0287)L168.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.424211 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.424142 # Constraint # added constraint: bonus constraint((T0287)L151.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.42339 # Constraint # added constraint: bonus constraint((T0287)I135.CB, (T0287)L144.CB) [> -10 = 7 < 14] w=0.422909 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.422767 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L61.CB) [> -10 = 7 < 14] w=0.422121 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.4219 # Constraint # added constraint: bonus constraint((T0287)F110.CB, (T0287)F121.CB) [> -10 = 7 < 14] w=0.421887 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)F124.CB) [> -10 = 7 < 14] w=0.420861 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)A103.CB) [> -10 = 7 < 14] w=0.420502 # Constraint # added constraint: bonus constraint((T0287)L98.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.420228 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.420083 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.420001 # Constraint # added constraint: bonus constraint((T0287)L109.CB, (T0287)F125.CB) [> -10 = 7 < 14] w=0.419861 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)A74.CB) [> -10 = 7 < 14] w=0.419752 # Constraint # added constraint: bonus constraint((T0287)F50.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.419399 # Constraint # added constraint: bonus constraint((T0287)F108.CB, (T0287)L118.CB) [> -10 = 7 < 14] w=0.419207 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)M69.CB) [> -10 = 7 < 14] w=0.418595 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.417967 # Constraint # added constraint: bonus constraint((T0287)I12.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.417917 # Constraint # added constraint: bonus constraint((T0287)F155.CB, (T0287)F164.CB) [> -10 = 7 < 14] w=0.417617 # Constraint # added constraint: bonus constraint((T0287)I102.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.416931 # Constraint # added constraint: bonus constraint((T0287)F51.CB, (T0287)L91.CB) [> -10 = 7 < 14] w=0.416465 # Constraint # added constraint: bonus constraint((T0287)M11.CB, (T0287)I44.CB) [> -10 = 7 < 14] w=0.416319 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)I120.CB) [> -10 = 7 < 14] w=0.415229 # Constraint # added constraint: bonus constraint((T0287)I76.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.415216 # Constraint # added constraint: bonus constraint((T0287)F121.CB, (T0287)F155.CB) [> -10 = 7 < 14] w=0.415066 # Constraint # added constraint: bonus constraint((T0287)F164.CB, (T0287)L187.CB) [> -10 = 7 < 14] w=0.414821 # Constraint # added constraint: bonus constraint((T0287)I142.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.414808 # Constraint # added constraint: bonus constraint((T0287)V162.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.414796 # Constraint # added constraint: bonus constraint((T0287)M11.CB, (T0287)I40.CB) [> -10 = 7 < 14] w=0.414708 # Constraint # added constraint: bonus constraint((T0287)L32.CB, (T0287)L98.CB) [> -10 = 7 < 14] w=0.413959 # Constraint # added constraint: bonus constraint((T0287)I23.CB, (T0287)M54.CB) [> -10 = 7 < 14] w=0.413277 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)F110.CB) [> -10 = 7 < 14] w=0.410333 # Constraint # added constraint: bonus constraint((T0287)L26.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.410116 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)E97.CB) [> -10 = 7 < 14] w=0.409851 # Constraint # added constraint: bonus constraint((T0287)V81.CB, (T0287)L99.CB) [> -10 = 7 < 14] w=0.409808 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.409122 # Constraint # added constraint: bonus constraint((T0287)L65.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.408749 # Constraint # added constraint: bonus constraint((T0287)L154.CB, (T0287)I171.CB) [> -10 = 7 < 14] w=0.408489 # Constraint # added constraint: bonus constraint((T0287)L118.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.407602 # Constraint # added constraint: bonus constraint((T0287)I41.CB, (T0287)Y72.CB) [> -10 = 7 < 14] w=0.407105 # Constraint # added constraint: bonus constraint((T0287)V75.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.406791 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.406332 # Constraint # added constraint: bonus constraint((T0287)M47.CB, (T0287)I102.CB) [> -10 = 7 < 14] w=0.406181 # Constraint # added constraint: bonus constraint((T0287)L99.CB, (T0287)F108.CB) [> -10 = 7 < 14] w=0.406164 # Constraint # added constraint: bonus constraint((T0287)L8.CB, (T0287)L181.CB) [> -10 = 7 < 14] w=0.405878 # Constraint # added constraint: bonus constraint((T0287)I117.CB, (T0287)I135.CB) [> -10 = 7 < 14] w=0.405564 # Constraint # added constraint: bonus constraint((T0287)I135.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.40491 # Constraint # added constraint: bonus constraint((T0287)L90.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.404829 # Constraint # added constraint: bonus constraint((T0287)V87.CB, (T0287)L182.CB) [> -10 = 7 < 14] w=0.404284 # Constraint # added constraint: bonus constraint((T0287)L61.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.404076 # Constraint # added constraint: bonus constraint((T0287)I40.CB, (T0287)D49.CB) [> -10 = 7 < 14] w=0.403171 # Constraint # added constraint: bonus constraint((T0287)L91.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.402998 # Constraint # added constraint: bonus constraint((T0287)M69.CB, (T0287)F84.CB) [> -10 = 7 < 14] w=0.402643 # Constraint # added constraint: bonus constraint((T0287)F9.CB, (T0287)L90.CB) [> -10 = 7 < 14] w=0.401968 # Constraint # added constraint: bonus constraint((T0287)S78.CB, (T0287)V87.CB) [> -10 = 7 < 14] w=0.401862 # Constraint # added constraint: bonus constraint((T0287)I120.CB, (T0287)M130.CB) [> -10 = 7 < 14] w=0.401067 # Constraint # added constraint: bonus constraint((T0287)L22.CB, (T0287)V178.CB) [> -10 = 7 < 14] w=0.401001 # command:CPU_time= 34.5088 sec, elapsed time= 46.813 sec) # command:# Making generic fragment library # fragment library contains # type length num_fragments num_indexes_used # n-terminus 1 1892 20 (100%) # n-terminus 2 1843 326 (81.5%) # middle 1 471021 20 (100%) # middle 2 460493 400 (100%) # middle 3 450512 7988 (99.85%) # middle 4 440909 118559 (74.0994%) # c-terminus 1 1858 20 (100%) # c-terminus 2 1813 367 (91.75%) # ss-bonds 1042 # command:CPU_time= 42.9085 sec, elapsed time= 56.407 sec) # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# reading Template.atoms # After reading Template.atoms have 560 chains in template library # command:# Prefix for input files set to 1a8y/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-fssp-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-fssp-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 T0287 5 :MRKL 1a8y 26 :VFKK # choosing archetypes in rotamer library T0287 11 :MIA 1a8y 32 :VLA T0287 14 :DSKD 1a8y 48 :QRQF T0287 20 :E 1a8y 54 :E T0287 21 :KLIESLQEN 1a8y 93 :DSIYVFKED T0287 32 :LNTD 1a8y 104 :IEYD T0287 38 :KKII 1a8y 110 :FSAD T0287 42 :DQIKTMH 1a8y 125 :DPVELIE T0287 51 :F 1a8y 136 :L T0287 54 :MHT 1a8y 139 :FEN T0287 58 :KGA 1a8y 142 :IED T0287 64 :VLRNYMKD 1a8y 147 :KLIGYFKN T0287 94 :ETMELLHAIAENP 1a8y 158 :EHYKAFKEAAEEF T0287 107 :N 1a8y 173 :Y T0287 110 :FSKFDRSILG 1a8y 176 :FFATFDSKVA T0287 148 :N 1a8y 191 :K T0287 151 :LLKLFVMTD 1a8y 194 :EIDFYEAFM T0287 162 :VNFY 1a8y 205 :PVTI T0287 168 :L 1a8y 212 :P T0287 182 :LMKFDLEKYMKEKG 1a8y 213 :NSEEEIVNFVEEHR Number of specific fragments extracted= 20 number of extra gaps= 11 total=20 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2072979738.pdb -s /var/tmp/to_scwrl_2072979738.seq -o /var/tmp/from_scwrl_2072979738.pdb > /var/tmp/scwrl_2072979738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2072979738.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-fssp-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-fssp-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)L65 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 T0287 55 :HTNKGALDKV 1a8y 42 :EDDKASQRQF T0287 67 :NYMKDYR 1a8y 54 :EELILEL T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :M 1a8y 104 :I T0287 97 :ELLHAIAENP 1a8y 161 :KAFKEAAEEF T0287 107 :N 1a8y 173 :Y T0287 110 :FSKFD 1a8y 176 :FFATF Number of specific fragments extracted= 8 number of extra gaps= 4 total=28 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1372194465.pdb -s /var/tmp/to_scwrl_1372194465.seq -o /var/tmp/from_scwrl_1372194465.pdb > /var/tmp/scwrl_1372194465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1372194465.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-global-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t04-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K194 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 T0287 8 :LFSMIADSKD 1a8y 4 :LDFPEYDGVD T0287 20 :EKLIESLQENELLNTD 1a8y 54 :EELILELAAQVLEDKG T0287 36 :EKKKIIDQIKTMHDFFKQMHT 1a8y 111 :SADTLVEFLLDVLEDPVELIE T0287 59 :GAL 1a8y 134 :REL T0287 64 :VLR 1a8y 139 :FEN T0287 67 :NYMKDY 1a8y 168 :EEFHPY T0287 75 :VIKSIG 1a8y 176 :FFATFD T0287 82 :DKFKKV 1a8y 182 :SKVAKK T0287 91 :L 1a8y 191 :K T0287 94 :ETMELLHAI 1a8y 194 :EIDFYEAFM T0287 105 :NPNF 1a8y 205 :PVTI T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 138 :M 1a8y 235 :P T0287 142 :IELYGTNLPLLKLFVM 1a8y 239 :YETWEDDMDGIHIVAF T0287 160 :EE 1a8y 257 :EA T0287 168 :LKTIEQYNDYVRDLLMKF 1a8y 259 :DPDGYEFLEILKSVAQDN T0287 188 :EKYMK 1a8y 321 :DSVWM T0287 195 :GVQNA 1a8y 335 :SAEEL Number of specific fragments extracted= 18 number of extra gaps= 9 total=46 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_276076929.pdb -s /var/tmp/to_scwrl_276076929.seq -o /var/tmp/from_scwrl_276076929.pdb > /var/tmp/scwrl_276076929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_276076929.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t04-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)E97 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)A166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 8 :LFSMIADSKDKK 1a8y 4 :LDFPEYDGVDRV T0287 20 :EKLIESLQENE 1a8y 54 :EELILELAAQV T0287 31 :LLNTDEKKKII 1a8y 74 :LVDSEKDAAVA T0287 44 :IK 1a8y 87 :LG T0287 46 :T 1a8y 94 :S T0287 48 :HD 1a8y 104 :IE T0287 51 :FK 1a8y 106 :YD T0287 55 :H 1a8y 110 :F T0287 57 :NKGALDKVLRNYMK 1a8y 111 :SADTLVEFLLDVLE T0287 85 :KKVYRLL 1a8y 125 :DPVELIE T0287 94 :ETM 1a8y 134 :REL T0287 99 :LHAIAE 1a8y 139 :FENIED T0287 107 :N 1a8y 147 :K T0287 108 :F 1a8y 208 :I T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 138 :M 1a8y 235 :P T0287 142 :IELYGTNLP 1a8y 239 :YETWEDDMD T0287 151 :LLKLF 1a8y 250 :HIVAF T0287 158 :TD 1a8y 257 :EA T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 8 total=67 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_975574165.pdb -s /var/tmp/to_scwrl_975574165.seq -o /var/tmp/from_scwrl_975574165.pdb > /var/tmp/scwrl_975574165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_975574165.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-local-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t04-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 T0287 147 :TNLPLLKLF 1a8y 90 :TEEDSIYVF T0287 157 :MTD 1a8y 99 :KED T0287 162 :VN 1a8y 104 :IE T0287 165 :YA 1a8y 106 :YD T0287 169 :KTIEQYNDYVRDLL 1a8y 110 :FSADTLVEFLLDVL Number of specific fragments extracted= 5 number of extra gaps= 2 total=72 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1994252430.pdb -s /var/tmp/to_scwrl_1994252430.seq -o /var/tmp/from_scwrl_1994252430.pdb > /var/tmp/scwrl_1994252430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994252430.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t04-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t04-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 T0287 49 :DFFKQMHT 1a8y 124 :EDPVELIE T0287 59 :GAL 1a8y 134 :REL T0287 64 :VL 1a8y 139 :FE T0287 66 :RNYMKD 1a8y 168 :EEFHPY T0287 74 :AVIKSI 1a8y 176 :FFATFD T0287 82 :DKFKKV 1a8y 182 :SKVAKK T0287 91 :L 1a8y 191 :K T0287 94 :ETMELLHAI 1a8y 194 :EIDFYEAFM T0287 105 :NPNF 1a8y 205 :PVTI T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 138 :M 1a8y 235 :P T0287 142 :IELY 1a8y 239 :YETW T0287 146 :GTNLPLLKLF 1a8y 245 :DMDGIHIVAF T0287 158 :TD 1a8y 257 :EA Number of specific fragments extracted= 14 number of extra gaps= 9 total=86 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1709707767.pdb -s /var/tmp/to_scwrl_1709707767.seq -o /var/tmp/from_scwrl_1709707767.pdb > /var/tmp/scwrl_1709707767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1709707767.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-global-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t06-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 T0287 2 :SNNMRKL 1a8y 12 :VDRVINV T0287 9 :FSMIADS 1a8y 43 :DDKASQR T0287 17 :D 1a8y 50 :Q T0287 20 :EKLIESLQEN 1a8y 54 :EELILELAAQ T0287 30 :ELLNTDEKKKII 1a8y 73 :GLVDSEKDAAVA T0287 44 :IK 1a8y 87 :LG T0287 48 :HD 1a8y 104 :IE T0287 51 :FK 1a8y 106 :YD T0287 55 :H 1a8y 110 :F T0287 57 :NKGALDKVLRNYMKDYRAVIK 1a8y 111 :SADTLVEFLLDVLEDPVELIE T0287 79 :IGVDK 1a8y 140 :ENIED T0287 86 :KVYRLLESE 1a8y 147 :KLIGYFKNK T0287 97 :ELLHAIAENPNFL 1a8y 158 :EHYKAFKEAAEEF T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQY 1a8y 261 :DGYEFLEILKSV T0287 187 :LEKY 1a8y 273 :AQDN T0287 193 :EKG 1a8y 279 :NPD T0287 198 :NA 1a8y 284 :II Number of specific fragments extracted= 21 number of extra gaps= 9 total=107 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1023028602.pdb -s /var/tmp/to_scwrl_1023028602.seq -o /var/tmp/from_scwrl_1023028602.pdb > /var/tmp/scwrl_1023028602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1023028602.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t06-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E97 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 3 :NNMRKL 1a8y 13 :DRVINV T0287 9 :FSMIADS 1a8y 43 :DDKASQR T0287 17 :D 1a8y 50 :Q T0287 20 :EKLIESLQENEL 1a8y 54 :EELILELAAQVL T0287 32 :LNTDEKKKII 1a8y 75 :VDSEKDAAVA T0287 44 :IK 1a8y 87 :LG T0287 48 :HD 1a8y 104 :IE T0287 51 :FK 1a8y 106 :YD T0287 55 :H 1a8y 110 :F T0287 57 :NKGALDKVLRNYMKDYR 1a8y 111 :SADTLVEFLLDVLEDPV T0287 74 :AVIKS 1a8y 183 :KVAKK T0287 83 :K 1a8y 191 :K T0287 86 :KVYRLLES 1a8y 194 :EIDFYEAF T0287 96 :M 1a8y 202 :M T0287 99 :LHAI 1a8y 205 :PVTI T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQYN 1a8y 261 :DGYEFLEILKSVA T0287 176 :DYVRDL 1a8y 341 :DWLEDV Number of specific fragments extracted= 21 number of extra gaps= 8 total=128 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1875728694.pdb -s /var/tmp/to_scwrl_1875728694.seq -o /var/tmp/from_scwrl_1875728694.pdb > /var/tmp/scwrl_1875728694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1875728694.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-local-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t06-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 T0287 112 :KFDRSILGIFLPFFSKPIMFKMS 1a8y 212 :PNSEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQY 1a8y 261 :DGYEFLEILKSV Number of specific fragments extracted= 5 number of extra gaps= 2 total=133 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1774364533.pdb -s /var/tmp/to_scwrl_1774364533.seq -o /var/tmp/from_scwrl_1774364533.pdb > /var/tmp/scwrl_1774364533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1774364533.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t06-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t06-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)V64 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)L65 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E97 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 T0287 32 :LNTDE 1a8y 140 :ENIED T0287 39 :KIIDQIK 1a8y 147 :KLIGYFK T0287 46 :TMHDFFKQMH 1a8y 162 :AFKEAAEEFH T0287 62 :DK 1a8y 172 :PY T0287 66 :RNYMKDY 1a8y 176 :FFATFDS T0287 74 :AVIKS 1a8y 183 :KVAKK T0287 83 :K 1a8y 191 :K T0287 86 :KVYRLLES 1a8y 194 :EIDFYEAF T0287 96 :M 1a8y 202 :M T0287 99 :LHAI 1a8y 205 :PVTI T0287 106 :PN 1a8y 212 :PN T0287 114 :DRSILGIFLPFFSKPIMFKMS 1a8y 214 :SEEEIVNFVEEHRRSTLRKLK T0287 136 :R 1a8y 235 :P T0287 140 :SQIELYGTNLPLLKLF 1a8y 239 :YETWEDDMDGIHIVAF T0287 158 :TDEE 1a8y 257 :EADP T0287 163 :NFYANLKTIEQY 1a8y 261 :DGYEFLEILKSV Number of specific fragments extracted= 16 number of extra gaps= 8 total=149 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1393869012.pdb -s /var/tmp/to_scwrl_1393869012.seq -o /var/tmp/from_scwrl_1393869012.pdb > /var/tmp/scwrl_1393869012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1393869012.pdb Number of alignments=10 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-global-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t2k-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 1 :MSNNMRKL 1a8y 44 :DKASQRQF T0287 9 :FSMIADSKDKKEKLIESL 1a8y 58 :LELAAQVLEDKGVGFGLV T0287 27 :QENELLN 1a8y 78 :EKDAAVA T0287 36 :EKKKIIDQIKTMHDF 1a8y 87 :LGLTEEDSIYVFKED T0287 53 :QMHT 1a8y 104 :IEYD T0287 59 :GALDKVLRNYMKDYRAVIKSIG 1a8y 110 :FSADTLVEFLLDVLEDPVELIE T0287 82 :DKF 1a8y 134 :REL T0287 87 :VYR 1a8y 139 :FEN T0287 90 :LLESE 1a8y 151 :YFKNK T0287 97 :ELLHAIAENPNFL 1a8y 158 :EHYKAFKEAAEEF T0287 110 :F 1a8y 187 :K T0287 114 :D 1a8y 191 :K T0287 117 :ILGIFLPFF 1a8y 194 :EIDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 135 :IREM 1a8y 232 :KLKP T0287 142 :IELYGTNLP 1a8y 239 :YETWEDDMD T0287 151 :LLKLFV 1a8y 249 :IHIVAF T0287 159 :DEEVNFYANLKTIEQYNDYV 1a8y 257 :EADPDGYEFLEILKSVAQDN T0287 181 :L 1a8y 279 :N T0287 182 :LMKFDLEKYMKE 1a8y 284 :IIWIDPDDFPLL T0287 196 :VQNA 1a8y 298 :YWEK Number of specific fragments extracted= 21 number of extra gaps= 13 total=170 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_204109677.pdb -s /var/tmp/to_scwrl_204109677.seq -o /var/tmp/from_scwrl_204109677.pdb > /var/tmp/scwrl_204109677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204109677.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-global-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t2k-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)M54 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 1 :MSNNMRKLFS 1a8y 11 :GVDRVINVNA T0287 11 :MI 1a8y 26 :VF T0287 14 :DSKDKKEKLIES 1a8y 40 :PPEDDKASQRQF T0287 26 :LQE 1a8y 65 :LED T0287 32 :LNTDEKKKII 1a8y 75 :VDSEKDAAVA T0287 44 :I 1a8y 87 :L T0287 45 :KTMHDFFKQ 1a8y 93 :DSIYVFKED T0287 56 :TN 1a8y 104 :IE T0287 58 :K 1a8y 107 :D T0287 61 :LD 1a8y 110 :FS T0287 63 :KVLRNYMKDY 1a8y 113 :DTLVEFLLDV T0287 73 :RAVIK 1a8y 127 :VELIE T0287 82 :DKF 1a8y 134 :REL T0287 87 :VYR 1a8y 139 :FEN T0287 90 :LLESE 1a8y 151 :YFKNK T0287 97 :ELLHAIAENPNFL 1a8y 158 :EHYKAFKEAAEEF T0287 110 :F 1a8y 187 :K T0287 114 :D 1a8y 191 :K T0287 117 :ILGIFLPFF 1a8y 194 :EIDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 135 :IREM 1a8y 212 :PNSE T0287 142 :IELYGTNLP 1a8y 239 :YETWEDDMD T0287 151 :LLKLFV 1a8y 249 :IHIVAF T0287 159 :DEEVNFYANLKTIEQYNDYV 1a8y 257 :EADPDGYEFLEILKSVAQDN T0287 181 :L 1a8y 279 :N T0287 182 :LMKFDLEKYMKE 1a8y 284 :IIWIDPDDFPLL T0287 196 :VQNA 1a8y 298 :YWEK Number of specific fragments extracted= 27 number of extra gaps= 13 total=197 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_786050610.pdb -s /var/tmp/to_scwrl_786050610.seq -o /var/tmp/from_scwrl_786050610.pdb > /var/tmp/scwrl_786050610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786050610.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-local-adpstyle1.a2m # 1a8y read from 1a8y-T0287-t2k-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)A166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 105 :NP 1a8y 234 :KP T0287 110 :FSKFDRSILGIFLPFF 1a8y 239 :YETWEDDMDGIHIVAF T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :LYGT 1a8y 298 :YWEK T0287 148 :N 1a8y 308 :S T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=205 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_245431201.pdb -s /var/tmp/to_scwrl_245431201.seq -o /var/tmp/from_scwrl_245431201.pdb > /var/tmp/scwrl_245431201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_245431201.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a8y-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a8y-T0287-t2k-local-adpstyle5.a2m # 1a8y read from 1a8y-T0287-t2k-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K211 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)A166 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 T0287 100 :HAIAENPNFL 1a8y 161 :KAFKEAAEEF T0287 110 :F 1a8y 187 :K T0287 114 :D 1a8y 191 :K T0287 117 :ILGIFLPFF 1a8y 194 :EIDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 135 :IREM 1a8y 212 :PNSE T0287 142 :IELYGTN 1a8y 239 :YETWEDD T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 10 number of extra gaps= 5 total=215 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1543509730.pdb -s /var/tmp/to_scwrl_1543509730.seq -o /var/tmp/from_scwrl_1543509730.pdb > /var/tmp/scwrl_1543509730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543509730.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-simplesw-adpstyle1.a2m # 1a8y read from T0287-1a8y-simplesw-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=218 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-simplesw-adpstyle5.a2m # 1a8y read from T0287-1a8y-simplesw-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 94 :ETMELLHAIA 1a8y 264 :EFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=226 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_216697407.pdb -s /var/tmp/to_scwrl_216697407.seq -o /var/tmp/from_scwrl_216697407.pdb > /var/tmp/scwrl_216697407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_216697407.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-adpstyle1.a2m # 1a8y read from T0287-1a8y-t04-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 4 :NMRKLFSMIADSKD 1a8y 4 :LDFPEYDGVDRVIN T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAEN 1a8y 110 :FSAD T0287 116 :SILGIFLPFFSKPIMFKM 1a8y 114 :TLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 142 :IELYGT 1a8y 139 :FENIED T0287 150 :PLLKLFVMT 1a8y 147 :KLIGYFKNK T0287 161 :E 1a8y 158 :E T0287 163 :NFYANLKTIEQYNDY 1a8y 159 :HYKAFKEAAEEFHPY T0287 181 :LLMKFDLEKYMK 1a8y 176 :FFATFDSKVAKK T0287 196 :V 1a8y 191 :K T0287 199 :A 1a8y 194 :E Number of specific fragments extracted= 18 number of extra gaps= 13 total=244 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1999685693.pdb -s /var/tmp/to_scwrl_1999685693.seq -o /var/tmp/from_scwrl_1999685693.pdb > /var/tmp/scwrl_1999685693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1999685693.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 4 :NMRKLFSMIA 1a8y 11 :GVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE T0287 98 :LLHAIAENPNFLFS 1a8y 118 :FLLDVLEDPVELIE T0287 112 :KF 1a8y 141 :NI T0287 116 :SILGIFLPF 1a8y 147 :KLIGYFKNK T0287 127 :KP 1a8y 158 :EH T0287 129 :IMFKMSIREMDSQ 1a8y 161 :KAFKEAAEEFHPY T0287 144 :LYGT 1a8y 176 :FFAT T0287 148 :NLPLLKL 1a8y 181 :DSKVAKK T0287 158 :T 1a8y 191 :K T0287 161 :EVNFYANLK 1a8y 194 :EIDFYEAFM T0287 181 :LLM 1a8y 205 :PVT Number of specific fragments extracted= 19 number of extra gaps= 12 total=263 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1104813694.pdb -s /var/tmp/to_scwrl_1104813694.seq -o /var/tmp/from_scwrl_1104813694.pdb > /var/tmp/scwrl_1104813694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1104813694.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 11 :MIADSK 1a8y 15 :VINVNA T0287 20 :EKLIES 1a8y 24 :KNVFKK T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKG 1a8y 54 :EELILELAAQVLEDKG T0287 69 :MKDYRAVI 1a8y 77 :SEKDAAVA T0287 79 :IGVDK 1a8y 87 :LGLTE T0287 85 :KKVYRLL 1a8y 113 :DTLVEFL T0287 94 :ETMELLHAIAEN 1a8y 158 :EHYKAFKEAAEE T0287 106 :PN 1a8y 172 :PY T0287 109 :LFSKFDRSI 1a8y 176 :FFATFDSKV T0287 118 :LGIFLPFF 1a8y 195 :IDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 137 :EMDSQI 1a8y 245 :DMDGIH T0287 145 :Y 1a8y 303 :F T0287 146 :GTN 1a8y 306 :DLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 17 number of extra gaps= 11 total=280 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_754988951.pdb -s /var/tmp/to_scwrl_754988951.seq -o /var/tmp/from_scwrl_754988951.pdb > /var/tmp/scwrl_754988951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754988951.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 13 :ADSKDKKEKL 1a8y 42 :EDDKASQRQF T0287 25 :SLQENEL 1a8y 54 :EELILEL T0287 33 :NTDEKKKII 1a8y 76 :DSEKDAAVA T0287 44 :IKTMHDFFKQMHT 1a8y 112 :ADTLVEFLLDVLE T0287 59 :GAL 1a8y 134 :REL T0287 64 :V 1a8y 139 :F T0287 65 :LRNYMKDY 1a8y 163 :FKEAAEEF T0287 73 :RAVIKS 1a8y 182 :SKVAKK T0287 82 :D 1a8y 191 :K T0287 85 :KKVYRLLES 1a8y 216 :EEIVNFVEE T0287 94 :ETMELLHAIAE 1a8y 264 :EFLEILKSVAQ T0287 105 :N 1a8y 276 :N T0287 125 :FSK 1a8y 279 :NPD T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :L 1a8y 298 :Y T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 13 total=301 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_202894024.pdb -s /var/tmp/to_scwrl_202894024.seq -o /var/tmp/from_scwrl_202894024.pdb > /var/tmp/scwrl_202894024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202894024.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-adpstyle1.a2m # 1a8y read from T0287-1a8y-t04-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=304 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=312 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1279169566.pdb -s /var/tmp/to_scwrl_1279169566.seq -o /var/tmp/from_scwrl_1279169566.pdb > /var/tmp/scwrl_1279169566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1279169566.pdb Number of alignments=20 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :F 1a8y 298 :Y T0287 125 :FS 1a8y 307 :LS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :DSQIE 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=320 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_44302849.pdb -s /var/tmp/to_scwrl_44302849.seq -o /var/tmp/from_scwrl_44302849.pdb > /var/tmp/scwrl_44302849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44302849.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 79 :IGVDKFKKVYRLLES 1a8y 257 :EADPDGYEFLEILKS T0287 98 :LLHAI 1a8y 272 :VAQDN T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRS 1a8y 289 :PDDFPLL T0287 121 :FLPFFS 1a8y 303 :FDIDLS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :D 1a8y 321 :D T0287 142 :IELY 1a8y 322 :SVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 9 number of extra gaps= 5 total=329 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_801808801.pdb -s /var/tmp/to_scwrl_801808801.seq -o /var/tmp/from_scwrl_801808801.pdb > /var/tmp/scwrl_801808801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_801808801.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-adpstyle1.a2m # 1a8y read from T0287-1a8y-t06-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 4 :NMRKLFSMIADSKD 1a8y 4 :LDFPEYDGVDRVIN T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAEN 1a8y 110 :FSAD T0287 116 :SILGIFLPFFSKPIMFKM 1a8y 114 :TLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 142 :IELYGT 1a8y 139 :FENIED T0287 150 :PLLKLFVMT 1a8y 147 :KLIGYFKNK T0287 161 :E 1a8y 158 :E T0287 163 :NFYANLKTIEQYNDY 1a8y 159 :HYKAFKEAAEEFHPY T0287 181 :LLMKFDLEKYMK 1a8y 176 :FFATFDSKVAKK T0287 196 :V 1a8y 191 :K T0287 199 :A 1a8y 194 :E Number of specific fragments extracted= 18 number of extra gaps= 13 total=347 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1834627796.pdb -s /var/tmp/to_scwrl_1834627796.seq -o /var/tmp/from_scwrl_1834627796.pdb > /var/tmp/scwrl_1834627796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1834627796.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 4 :NMRKLFSMIA 1a8y 11 :GVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE T0287 98 :LLHAIAENPNFLFS 1a8y 118 :FLLDVLEDPVELIE T0287 112 :KF 1a8y 141 :NI T0287 116 :SILGIFLPF 1a8y 147 :KLIGYFKNK T0287 127 :KP 1a8y 158 :EH T0287 129 :IMFKMSIREMDSQ 1a8y 161 :KAFKEAAEEFHPY T0287 144 :LYGT 1a8y 176 :FFAT T0287 148 :NLPLLKL 1a8y 181 :DSKVAKK T0287 158 :T 1a8y 191 :K T0287 161 :EVNFYANLK 1a8y 194 :EIDFYEAFM T0287 181 :LLM 1a8y 205 :PVT Number of specific fragments extracted= 19 number of extra gaps= 12 total=366 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1919689484.pdb -s /var/tmp/to_scwrl_1919689484.seq -o /var/tmp/from_scwrl_1919689484.pdb > /var/tmp/scwrl_1919689484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1919689484.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 11 :MIADSK 1a8y 15 :VINVNA T0287 20 :EKLIES 1a8y 24 :KNVFKK T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKG 1a8y 54 :EELILELAAQVLEDKG T0287 69 :MKDYRAVI 1a8y 77 :SEKDAAVA T0287 79 :IGVDK 1a8y 87 :LGLTE T0287 85 :KKVYRLL 1a8y 113 :DTLVEFL T0287 94 :ETMELLHAIAEN 1a8y 158 :EHYKAFKEAAEE T0287 106 :PN 1a8y 172 :PY T0287 109 :LFSKFDRSI 1a8y 176 :FFATFDSKV T0287 118 :LGIFLPFF 1a8y 195 :IDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 137 :EMDSQI 1a8y 245 :DMDGIH T0287 145 :Y 1a8y 303 :F T0287 146 :GTN 1a8y 306 :DLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 17 number of extra gaps= 11 total=383 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_706303199.pdb -s /var/tmp/to_scwrl_706303199.seq -o /var/tmp/from_scwrl_706303199.pdb > /var/tmp/scwrl_706303199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_706303199.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 13 :ADSKDKKEKL 1a8y 42 :EDDKASQRQF T0287 25 :SLQENEL 1a8y 54 :EELILEL T0287 33 :NTDEKKKII 1a8y 76 :DSEKDAAVA T0287 44 :IKTMHDFFKQMHT 1a8y 112 :ADTLVEFLLDVLE T0287 59 :GAL 1a8y 134 :REL T0287 64 :V 1a8y 139 :F T0287 65 :LRNYMKDY 1a8y 163 :FKEAAEEF T0287 73 :RAVIKS 1a8y 182 :SKVAKK T0287 82 :D 1a8y 191 :K T0287 85 :KKVYRLLES 1a8y 216 :EEIVNFVEE T0287 94 :ETMELLHAIAE 1a8y 264 :EFLEILKSVAQ T0287 105 :N 1a8y 276 :N T0287 125 :FSK 1a8y 279 :NPD T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :L 1a8y 298 :Y T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 13 total=404 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_821670892.pdb -s /var/tmp/to_scwrl_821670892.seq -o /var/tmp/from_scwrl_821670892.pdb > /var/tmp/scwrl_821670892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821670892.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-adpstyle1.a2m # 1a8y read from T0287-1a8y-t06-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=407 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=415 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_701343069.pdb -s /var/tmp/to_scwrl_701343069.seq -o /var/tmp/from_scwrl_701343069.pdb > /var/tmp/scwrl_701343069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_701343069.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :F 1a8y 298 :Y T0287 125 :FS 1a8y 307 :LS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :DSQIE 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=423 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1262637028.pdb -s /var/tmp/to_scwrl_1262637028.seq -o /var/tmp/from_scwrl_1262637028.pdb > /var/tmp/scwrl_1262637028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1262637028.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 79 :IGVDKFKKVYRLLES 1a8y 257 :EADPDGYEFLEILKS T0287 98 :LLHAI 1a8y 272 :VAQDN T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRS 1a8y 289 :PDDFPLL T0287 121 :FLPFFS 1a8y 303 :FDIDLS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :D 1a8y 321 :D T0287 142 :IELY 1a8y 322 :SVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 9 number of extra gaps= 5 total=432 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2036912538.pdb -s /var/tmp/to_scwrl_2036912538.seq -o /var/tmp/from_scwrl_2036912538.pdb > /var/tmp/scwrl_2036912538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036912538.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-adpstyle1.a2m # 1a8y read from T0287-1a8y-t2k-global-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 4 :NMRKLFSMIADSKD 1a8y 4 :LDFPEYDGVDRVIN T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAEN 1a8y 110 :FSAD T0287 116 :SILGIFLPFFSKPIMFKM 1a8y 114 :TLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 142 :IELYGT 1a8y 139 :FENIED T0287 150 :PLLKLFVMT 1a8y 147 :KLIGYFKNK T0287 161 :E 1a8y 158 :E T0287 163 :NFYANLKTIEQYNDY 1a8y 159 :HYKAFKEAAEEFHPY T0287 181 :LLMKFDLEKYMK 1a8y 176 :FFATFDSKVAKK T0287 196 :V 1a8y 191 :K T0287 199 :A 1a8y 194 :E Number of specific fragments extracted= 18 number of extra gaps= 13 total=450 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_371289403.pdb -s /var/tmp/to_scwrl_371289403.seq -o /var/tmp/from_scwrl_371289403.pdb > /var/tmp/scwrl_371289403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371289403.pdb Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-global-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 4 :NMRKLFSMIA 1a8y 11 :GVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 18 :KK 1a8y 28 :KK T0287 22 :LIESLQ 1a8y 32 :VLALLY T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1a8y 54 :EELILELAAQVLEDKGVGFGLVDS T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE T0287 98 :LLHAIAENPNFLFS 1a8y 118 :FLLDVLEDPVELIE T0287 112 :KF 1a8y 141 :NI T0287 116 :SILGIFLPF 1a8y 147 :KLIGYFKNK T0287 127 :KP 1a8y 158 :EH T0287 129 :IMFKMSIREMDSQ 1a8y 161 :KAFKEAAEEFHPY T0287 144 :LYGT 1a8y 176 :FFAT T0287 148 :NLPLLKL 1a8y 181 :DSKVAKK T0287 158 :T 1a8y 191 :K T0287 161 :EVNFYANLK 1a8y 194 :EIDFYEAFM T0287 181 :LLM 1a8y 205 :PVT Number of specific fragments extracted= 19 number of extra gaps= 12 total=469 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_477341388.pdb -s /var/tmp/to_scwrl_477341388.seq -o /var/tmp/from_scwrl_477341388.pdb > /var/tmp/scwrl_477341388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_477341388.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S237 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M238 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E256 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E256 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 30 :ELLNTDEKKKII 1a8y 40 :PPEDDKASQRQF T0287 44 :IKTMHDFFKQMHTNKG 1a8y 54 :EELILELAAQVLEDKG T0287 70 :KDYRAVI 1a8y 78 :EKDAAVA T0287 79 :IGVDK 1a8y 87 :LGLTE T0287 85 :KKVYRLL 1a8y 113 :DTLVEFL T0287 94 :ETMELLHAIAEN 1a8y 158 :EHYKAFKEAAEE T0287 106 :PN 1a8y 172 :PY T0287 109 :LFSKFDRSI 1a8y 176 :FFATFDSKV T0287 118 :LGIFLPFF 1a8y 195 :IDFYEAFM T0287 128 :PIMF 1a8y 205 :PVTI T0287 137 :EM 1a8y 234 :KP T0287 142 :IELYGTNLPLLKLFVM 1a8y 239 :YETWEDDMDGIHIVAF T0287 160 :EE 1a8y 257 :EA T0287 162 :VNFYANLKTIEQYN 1a8y 263 :YEFLEILKSVAQDN T0287 183 :MKFD 1a8y 292 :FPLL T0287 189 :KYMKEKGVQ 1a8y 298 :YWEKTFDID Number of specific fragments extracted= 18 number of extra gaps= 11 total=487 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1962408630.pdb -s /var/tmp/to_scwrl_1962408630.seq -o /var/tmp/from_scwrl_1962408630.pdb > /var/tmp/scwrl_1962408630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1962408630.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)M5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)K63 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 2 :S 1a8y 20 :A T0287 6 :RKLFSM 1a8y 24 :KNVFKK T0287 13 :ADSKDKKEKL 1a8y 42 :EDDKASQRQF T0287 25 :SLQENEL 1a8y 54 :EELILEL T0287 33 :NTDEKKKII 1a8y 76 :DSEKDAAVA T0287 44 :IKTMHDFFKQMHT 1a8y 112 :ADTLVEFLLDVLE T0287 59 :GAL 1a8y 134 :REL T0287 64 :V 1a8y 139 :F T0287 65 :LRNYMKDY 1a8y 163 :FKEAAEEF T0287 73 :RAVIKS 1a8y 182 :SKVAKK T0287 82 :D 1a8y 191 :K T0287 85 :KKVYRLLES 1a8y 216 :EEIVNFVEE T0287 94 :ETMELLHAIAE 1a8y 264 :EFLEILKSVAQ T0287 105 :N 1a8y 276 :N T0287 125 :FSK 1a8y 279 :NPD T0287 130 :MFKMSIREMDSQ 1a8y 284 :IIWIDPDDFPLL T0287 144 :L 1a8y 298 :Y T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 161 :EVNFY 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 21 number of extra gaps= 13 total=508 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1743483868.pdb -s /var/tmp/to_scwrl_1743483868.seq -o /var/tmp/from_scwrl_1743483868.pdb > /var/tmp/scwrl_1743483868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1743483868.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-adpstyle1.a2m # 1a8y read from T0287-1a8y-t2k-local-adpstyle1.a2m # found chain 1a8y in template set Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 T0287 74 :AVI 1a8y 82 :AVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :ME 1a8y 104 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=511 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-local-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)V156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIA 1a8y 263 :YEFLEILKSVA T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRSILGIF 1a8y 284 :IIWIDPDDFPLL T0287 124 :FFSKPIMFKMS 1a8y 298 :YWEKTFDIDLS T0287 137 :E 1a8y 311 :Q T0287 142 :IELYGTN 1a8y 312 :IGVVNVT T0287 151 :LLKLF 1a8y 321 :DSVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=519 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_753418317.pdb -s /var/tmp/to_scwrl_753418317.seq -o /var/tmp/from_scwrl_753418317.pdb > /var/tmp/scwrl_753418317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753418317.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 93 :SETMELLHAIAENP 1a8y 263 :YEFLEILKSVAQDN T0287 112 :KFD 1a8y 279 :NPD T0287 117 :ILGIFL 1a8y 284 :IIWIDP T0287 125 :FSKPIM 1a8y 290 :DDFPLL T0287 133 :MSIREMD 1a8y 298 :YWEKTFD T0287 145 :YGTN 1a8y 305 :IDLS T0287 151 :LLKLFVMT 1a8y 311 :QIGVVNVT T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 8 number of extra gaps= 5 total=527 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_790499148.pdb -s /var/tmp/to_scwrl_790499148.seq -o /var/tmp/from_scwrl_790499148.pdb > /var/tmp/scwrl_790499148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_790499148.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a8y read from T0287-1a8y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a8y in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P310 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P310 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A320 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A320 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a8y)P334 Warning: unaligning (T0287)K169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a8y)P334 Warning: unaligning (T0287)L182 because last residue in template chain is (1a8y)L347 T0287 79 :IGVDKFKKVYRLLES 1a8y 257 :EADPDGYEFLEILKS T0287 98 :LLHAI 1a8y 272 :VAQDN T0287 105 :NPN 1a8y 279 :NPD T0287 110 :FSKFDRS 1a8y 289 :PDDFPLL T0287 121 :FLPFFS 1a8y 303 :FDIDLS T0287 129 :IMFKMSIR 1a8y 311 :QIGVVNVT T0287 139 :D 1a8y 321 :D T0287 142 :IELY 1a8y 322 :SVWM T0287 170 :TIEQYNDYVRDL 1a8y 335 :SAEELEDWLEDV Number of specific fragments extracted= 9 number of extra gaps= 5 total=536 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1590252651.pdb -s /var/tmp/to_scwrl_1590252651.seq -o /var/tmp/from_scwrl_1590252651.pdb > /var/tmp/scwrl_1590252651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590252651.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1a8y-t04-muscle.a2m.gz # 1a8y read from T0287-1a8y-t04-muscle.a2m.gz # found chain 1a8y in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)T170 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)K184 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 T0287 3 :NNMRKLFSMIADSKDKK 1a8y 4 :LDFPEYDGVDRVINVNA T0287 23 :IESLQE 1a8y 24 :KNVFKK T0287 31 :LLNTDE 1a8y 32 :VLALLY T0287 39 :KIIDQIKTMHD 1a8y 40 :PPEDDKASQRQ T0287 52 :KQMHTNKGAL 1a8y 54 :EELILELAAQ T0287 62 :DKVLRNYMKDYRAVI 1a8y 70 :VGFGLVDSEKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAENP 1a8y 110 :FSADT T0287 110 :FSKFDRSILGIFLPFFS 1a8y 115 :LVEFLLDVLEDPVELIE T0287 129 :IMF 1a8y 134 :REL T0287 134 :SIREMD 1a8y 139 :FENIED T0287 142 :IELYGTNLP 1a8y 147 :KLIGYFKNK T0287 153 :KLFVMTDEEVNFYANL 1a8y 158 :EHYKAFKEAAEEFHPY T0287 171 :IEQYNDYVRDLL 1a8y 176 :FFATFDSKVAKK T0287 186 :D 1a8y 191 :K T0287 189 :KYMKEKGVQ 1a8y 194 :EIDFYEAFM Number of specific fragments extracted= 17 number of extra gaps= 15 total=553 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_315642438.pdb -s /var/tmp/to_scwrl_315642438.seq -o /var/tmp/from_scwrl_315642438.pdb > /var/tmp/scwrl_315642438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315642438.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1a8y-t06-muscle.a2m.gz # 1a8y read from T0287-1a8y-t06-muscle.a2m.gz # found chain 1a8y in template set Warning: unaligning (T0287)M11 because first residue in template chain is (1a8y)G3 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)L31 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)M53 Warning: unaligning (T0287)L61 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)M53 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)I146 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)I146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S157 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S157 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 T0287 12 :IADSKDKKEKLIESLQE 1a8y 4 :LDFPEYDGVDRVINVNA T0287 32 :LNTDEK 1a8y 24 :KNVFKK T0287 40 :IIDQIK 1a8y 32 :VLALLY T0287 48 :HDFFKQMHTNKG 1a8y 40 :PPEDDKASQRQF T0287 62 :DKVLRNYMK 1a8y 54 :EELILELAA T0287 71 :DYRAVIKSIGVDKFKKVY 1a8y 67 :DKGVGFGLVDSEKDAAVA T0287 91 :LESETMELLHAIAEN 1a8y 87 :LGLTEEDSIYVFKED T0287 108 :FLFS 1a8y 104 :IEYD T0287 114 :DRSILGIFLPFFSKPIMFKM 1a8y 112 :ADTLVEFLLDVLEDPVELIE T0287 136 :REM 1a8y 134 :REL T0287 141 :QIELYG 1a8y 139 :FENIED T0287 149 :LPLLKLFVM 1a8y 147 :KLIGYFKNK T0287 160 :EEVNFYANLKTIEQYN 1a8y 158 :EHYKAFKEAAEEFHPY T0287 178 :VRDLLMKFDLEK 1a8y 176 :FFATFDSKVAKK T0287 193 :E 1a8y 191 :K T0287 196 :VQNA 1a8y 194 :EIDF Number of specific fragments extracted= 16 number of extra gaps= 14 total=569 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1813527749.pdb -s /var/tmp/to_scwrl_1813527749.seq -o /var/tmp/from_scwrl_1813527749.pdb > /var/tmp/scwrl_1813527749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813527749.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1a8y-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1a8y-t2k-muscle.a2m.gz # 1a8y read from T0287-1a8y-t2k-muscle.a2m.gz # found chain 1a8y in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N22 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N22 Warning: unaligning (T0287)K16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1a8y)Y23 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E31 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E31 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E39 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E39 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)K86 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)K86 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)V103 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)V103 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E109 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E109 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E133 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E133 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)A138 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)A138 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P175 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P175 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)T189 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)T189 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)L190 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)N193 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)N193 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)E204 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)E204 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D210 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D210 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)D278 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)D278 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)S283 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)S283 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1a8y)P297 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1a8y)P297 T0287 1 :MSNNMRKLFSMIA 1a8y 8 :EYDGVDRVINVNA T0287 17 :D 1a8y 24 :K T0287 24 :ESLQE 1a8y 25 :NVFKK T0287 31 :LLNTDE 1a8y 32 :VLALLY T0287 39 :KIIDQIKTMHDF 1a8y 40 :PPEDDKASQRQF T0287 51 :FKQMHTNKGALDKVLRNY 1a8y 58 :LELAAQVLEDKGVGFGLV T0287 69 :MKDYRAVI 1a8y 77 :SEKDAAVA T0287 79 :IGVDKFKKVYRLLES 1a8y 87 :LGLTEEDSIYVFKED T0287 96 :MELL 1a8y 104 :IEYD T0287 102 :IAENP 1a8y 110 :FSADT T0287 107 :NFLFSKFDRSILGIF 1a8y 117 :EFLLDVLEDPVELIE T0287 124 :FFS 1a8y 134 :REL T0287 129 :IM 1a8y 139 :FE T0287 133 :MSIREMDSQIEL 1a8y 176 :FFATFDSKVAKK T0287 148 :N 1a8y 191 :K T0287 151 :LLKLFVMTD 1a8y 194 :EIDFYEAFM T0287 162 :VNFY 1a8y 205 :PVTI T0287 168 :LKTIEQY 1a8y 270 :KSVAQDN T0287 177 :YVR 1a8y 279 :NPD T0287 182 :LMKFDLEKYMKE 1a8y 284 :IIWIDPDDFPLL T0287 196 :VQNA 1a8y 298 :YWEK Number of specific fragments extracted= 21 number of extra gaps= 16 total=590 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1318497699.pdb -s /var/tmp/to_scwrl_1318497699.seq -o /var/tmp/from_scwrl_1318497699.pdb > /var/tmp/scwrl_1318497699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1318497699.pdb Number of alignments=39 # command:# Prefix for input files set to 1ahjA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-global-adpstyle1.a2m # 1ahjA read from 1ahjA-T0287-t2k-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)R6 because first residue in template chain is (1ahjA)E10 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1ahjA 11 :NAAPAQAAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 68 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 166 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 4 number of extra gaps= 0 total=594 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2090006971.pdb -s /var/tmp/to_scwrl_2090006971.seq -o /var/tmp/from_scwrl_2090006971.pdb > /var/tmp/scwrl_2090006971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2090006971.pdb Number of alignments=40 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-global-adpstyle5.a2m # 1ahjA read from 1ahjA-T0287-t2k-global-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)R6 because first residue in template chain is (1ahjA)E10 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQM 1ahjA 11 :NAAPAQAAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGA T0287 55 :HTNKGALDKVLR 1ahjA 60 :LVARAWTDPEFR T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 73 :LLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFVMTDEEVNFYANLK 1ahjA 157 :EIRVYDTTAETRYMVLP T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQN 1ahjA 175 :RPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=600 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1059913115.pdb -s /var/tmp/to_scwrl_1059913115.seq -o /var/tmp/from_scwrl_1059913115.pdb > /var/tmp/scwrl_1059913115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1059913115.pdb Number of alignments=41 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-local-adpstyle1.a2m # 1ahjA read from 1ahjA-T0287-t2k-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=601 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1522607376.pdb -s /var/tmp/to_scwrl_1522607376.seq -o /var/tmp/from_scwrl_1522607376.pdb > /var/tmp/scwrl_1522607376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522607376.pdb Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ahjA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ahjA-T0287-t2k-local-adpstyle5.a2m # 1ahjA read from 1ahjA-T0287-t2k-local-adpstyle5.a2m # found chain 1ahjA in template set T0287 66 :RNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 72 :QLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS Number of specific fragments extracted= 2 number of extra gaps= 0 total=603 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_728573935.pdb -s /var/tmp/to_scwrl_728573935.seq -o /var/tmp/from_scwrl_728573935.pdb > /var/tmp/scwrl_728573935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_728573935.pdb Number of alignments=43 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # 1ahjA read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 4 :NMR 1ahjA 14 :PAQ T0287 13 :ADSKDKKEKLIESLQENELLNTD 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDG T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 40 :YVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFV 1ahjA 157 :EIRV T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 162 :DTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 0 total=610 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1305344315.pdb -s /var/tmp/to_scwrl_1305344315.seq -o /var/tmp/from_scwrl_1305344315.pdb > /var/tmp/scwrl_1305344315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305344315.pdb Number of alignments=44 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # 1ahjA read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # found chain 1ahjA in template set T0287 109 :LFSKFDRSILGIFLPFFS 1ahjA 112 :LCSCTAWPILGLPPTWYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=611 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-simplesw-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-simplesw-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=612 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-simplesw-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-simplesw-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=612 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t04-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MIADSK 1ahjA 11 :NAAPAQ T0287 17 :DKKEKLIESLQENELLNT 1ahjA 21 :DRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 39 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 172 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 6 number of extra gaps= 0 total=618 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_918633461.pdb -s /var/tmp/to_scwrl_918633461.seq -o /var/tmp/from_scwrl_918633461.pdb > /var/tmp/scwrl_918633461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_918633461.pdb Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 10 :SMIADSKDKKEKLIESLQENELLNTDE 1ahjA 14 :PAQAAVSDRAWALFRALDGKGLVPDGY T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 41 :VEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVC T0287 108 :FLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 111 :SLCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 1ahjA 158 :IRVYDTTAE T0287 162 :VNFYANLK 1ahjA 167 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 178 :GTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 7 number of extra gaps= 0 total=625 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_945271342.pdb -s /var/tmp/to_scwrl_945271342.seq -o /var/tmp/from_scwrl_945271342.pdb > /var/tmp/scwrl_945271342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_945271342.pdb Number of alignments=46 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MI 1ahjA 11 :NA T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=634 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1157546361.pdb -s /var/tmp/to_scwrl_1157546361.seq -o /var/tmp/from_scwrl_1157546361.pdb > /var/tmp/scwrl_1157546361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1157546361.pdb Number of alignments=47 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 85 :KKVYRLLESETMELLHAIAEN 1ahjA 131 :FEYRARVVREPRKVLSEMGTE T0287 113 :FDR 1ahjA 152 :IAS T0287 139 :DSQIELYGTNLPLLKLFVMT 1ahjA 155 :DIEIRVYDTTAETRYMVLPQ T0287 159 :DEEVNF 1ahjA 176 :PAGTEG T0287 169 :KTIEQYNDYV 1ahjA 182 :WSQEQLQEIV T0287 179 :RDLLMKFDL 1ahjA 193 :KDCLIGVAI T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 10 number of extra gaps= 0 total=644 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2023447155.pdb -s /var/tmp/to_scwrl_2023447155.seq -o /var/tmp/from_scwrl_2023447155.pdb > /var/tmp/scwrl_2023447155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2023447155.pdb Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t04-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=645 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-local-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=645 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 8 number of extra gaps= 0 total=653 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1700260292.pdb -s /var/tmp/to_scwrl_1700260292.seq -o /var/tmp/from_scwrl_1700260292.pdb > /var/tmp/scwrl_1700260292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700260292.pdb Number of alignments=49 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFK 1ahjA 90 :PQGEYIVAVEDTPTLKNVIVCSLCSCTAWP T0287 144 :LYGT 1ahjA 120 :ILGL T0287 158 :TD 1ahjA 124 :PP T0287 163 :NFYANLK 1ahjA 126 :TWYKSFE T0287 174 :YNDYVRD 1ahjA 133 :YRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=662 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1360440385.pdb -s /var/tmp/to_scwrl_1360440385.seq -o /var/tmp/from_scwrl_1360440385.pdb > /var/tmp/scwrl_1360440385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360440385.pdb Number of alignments=50 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t06-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MIADSK 1ahjA 11 :NAAPAQ T0287 17 :DKKEKLIESLQENELLNT 1ahjA 21 :DRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 39 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 172 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 6 number of extra gaps= 0 total=668 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1155133075.pdb -s /var/tmp/to_scwrl_1155133075.seq -o /var/tmp/from_scwrl_1155133075.pdb > /var/tmp/scwrl_1155133075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1155133075.pdb Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 10 :SMIADSKDKKEKLIESLQENELLNTDE 1ahjA 14 :PAQAAVSDRAWALFRALDGKGLVPDGY T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 41 :VEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVC T0287 108 :FLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 111 :SLCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 1ahjA 158 :IRVYDTTAE T0287 162 :VNFYANLK 1ahjA 167 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 178 :GTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 7 number of extra gaps= 0 total=675 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1744563141.pdb -s /var/tmp/to_scwrl_1744563141.seq -o /var/tmp/from_scwrl_1744563141.pdb > /var/tmp/scwrl_1744563141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744563141.pdb Number of alignments=52 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MI 1ahjA 11 :NA T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=684 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_14765539.pdb -s /var/tmp/to_scwrl_14765539.seq -o /var/tmp/from_scwrl_14765539.pdb > /var/tmp/scwrl_14765539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_14765539.pdb Number of alignments=53 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 85 :KKVYRLLESETMELLHAIAEN 1ahjA 131 :FEYRARVVREPRKVLSEMGTE T0287 113 :FDR 1ahjA 152 :IAS T0287 139 :DSQIELYGTNLPLLKLFVMT 1ahjA 155 :DIEIRVYDTTAETRYMVLPQ T0287 159 :DEEVNF 1ahjA 176 :PAGTEG T0287 169 :KTIEQYNDYV 1ahjA 182 :WSQEQLQEIV T0287 179 :RDLLMKFDL 1ahjA 193 :KDCLIGVAI T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 10 number of extra gaps= 0 total=694 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_842277225.pdb -s /var/tmp/to_scwrl_842277225.seq -o /var/tmp/from_scwrl_842277225.pdb > /var/tmp/scwrl_842277225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_842277225.pdb Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t06-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=695 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-local-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=695 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 1ahjA 43 :GWKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 1ahjA 68 :PEFRQL T0287 91 :LESET 1ahjA 74 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLPP T0287 166 :ANLKTIEQYNDYVR 1ahjA 126 :TWYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 8 number of extra gaps= 0 total=703 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1516768979.pdb -s /var/tmp/to_scwrl_1516768979.seq -o /var/tmp/from_scwrl_1516768979.pdb > /var/tmp/scwrl_1516768979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1516768979.pdb Number of alignments=55 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFK 1ahjA 90 :PQGEYIVAVEDTPTLKNVIVCSLCSCTAWP T0287 144 :LYGT 1ahjA 120 :ILGL T0287 158 :TD 1ahjA 124 :PP T0287 163 :NFYANLK 1ahjA 126 :TWYKSFE T0287 174 :YNDYVRD 1ahjA 133 :YRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=712 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_721068738.pdb -s /var/tmp/to_scwrl_721068738.seq -o /var/tmp/from_scwrl_721068738.pdb > /var/tmp/scwrl_721068738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721068738.pdb Number of alignments=56 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t2k-global-adpstyle1.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MIADSK 1ahjA 11 :NAAPAQ T0287 17 :DKKEKLIESLQENELLNT 1ahjA 21 :DRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 39 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 172 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 6 number of extra gaps= 0 total=718 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1663948116.pdb -s /var/tmp/to_scwrl_1663948116.seq -o /var/tmp/from_scwrl_1663948116.pdb > /var/tmp/scwrl_1663948116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663948116.pdb Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-global-adpstyle5.a2m # found chain 1ahjA in template set T0287 10 :SMIADSKDKKEKLIESLQENELLNTDE 1ahjA 14 :PAQAAVSDRAWALFRALDGKGLVPDGY T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNY 1ahjA 41 :VEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1ahjA 75 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVC T0287 108 :FLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 1ahjA 111 :SLCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 1ahjA 158 :IRVYDTTAE T0287 162 :VNFYANLK 1ahjA 167 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 178 :GTEGWSQEQLQEIVTKDCLIGVAIPQVPTV Number of specific fragments extracted= 7 number of extra gaps= 0 total=725 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_70628401.pdb -s /var/tmp/to_scwrl_70628401.seq -o /var/tmp/from_scwrl_70628401.pdb > /var/tmp/scwrl_70628401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70628401.pdb Number of alignments=58 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set Warning: unaligning (T0287)S10 because first residue in template chain is (1ahjA)E10 T0287 11 :MI 1ahjA 11 :NA T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTF T0287 45 :KTMHDFFKQMHTNKGALDK 1ahjA 55 :RRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 1ahjA 74 :LLTDGTAAVAQYGY T0287 94 :ETMELLHAIAENPNFLFSKFDRSI 1ahjA 129 :KSFEYRARVVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVMTDEEVN 1ahjA 153 :ASDIEIRVYDTTAETRYMVLPQRPAGT T0287 167 :NLKTIEQYNDYV 1ahjA 180 :EGWSQEQLQEIV T0287 179 :RDLLMKFDLE 1ahjA 193 :KDCLIGVAIP T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 9 number of extra gaps= 0 total=734 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1983705766.pdb -s /var/tmp/to_scwrl_1983705766.seq -o /var/tmp/from_scwrl_1983705766.pdb > /var/tmp/scwrl_1983705766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983705766.pdb Number of alignments=59 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 85 :KKVYRLLESETMELLHAIAEN 1ahjA 131 :FEYRARVVREPRKVLSEMGTE T0287 113 :FDR 1ahjA 152 :IAS T0287 139 :DSQIELYGTNLPLLKLFVMT 1ahjA 155 :DIEIRVYDTTAETRYMVLPQ T0287 159 :DEEVNF 1ahjA 176 :PAGTEG T0287 169 :KTIEQYNDYV 1ahjA 182 :WSQEQLQEIV T0287 179 :RDLLMKFDL 1ahjA 193 :KDCLIGVAI T0287 195 :GVQNA 1ahjA 203 :QVPTV Number of specific fragments extracted= 10 number of extra gaps= 0 total=744 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1553377008.pdb -s /var/tmp/to_scwrl_1553377008.seq -o /var/tmp/from_scwrl_1553377008.pdb > /var/tmp/scwrl_1553377008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553377008.pdb Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-adpstyle1.a2m # 1ahjA read from T0287-1ahjA-t2k-local-adpstyle1.a2m # found chain 1ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 1ahjA 31 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=745 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-local-adpstyle5.a2m # found chain 1ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=745 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIID 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKK T0287 50 :FFKQMHTNKGALDKVLRNYM 1ahjA 47 :TFEEDFSPRRGAELVARAWT T0287 81 :VDKFKK 1ahjA 67 :DPEFRQ T0287 90 :LLESET 1ahjA 73 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 1ahjA 79 :TAAVAQYGYLGPQGEY T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLP 1ahjA 95 :IVAVEDTPTLKNVIVCSLCSCTAWPILGLP T0287 162 :VN 1ahjA 125 :PT T0287 167 :NLKTIEQYNDYVR 1ahjA 127 :WYKSFEYRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=754 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_441917804.pdb -s /var/tmp/to_scwrl_441917804.seq -o /var/tmp/from_scwrl_441917804.pdb > /var/tmp/scwrl_441917804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441917804.pdb Number of alignments=61 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ahjA read from T0287-1ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ahjA in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 17 :AAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKV 1ahjA 57 :GAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 1ahjA 75 :LTDGTAAVAQYGY T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFK 1ahjA 90 :PQGEYIVAVEDTPTLKNVIVCSLCSCTAWP T0287 144 :LYGT 1ahjA 120 :ILGL T0287 158 :TD 1ahjA 124 :PP T0287 163 :NFYANLK 1ahjA 126 :TWYKSFE T0287 174 :YNDYVRD 1ahjA 133 :YRARVVR T0287 186 :DLEKYMKEKGVQNA 1ahjA 140 :EPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=763 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_313563508.pdb -s /var/tmp/to_scwrl_313563508.seq -o /var/tmp/from_scwrl_313563508.pdb > /var/tmp/scwrl_313563508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_313563508.pdb Number of alignments=62 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ahjA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1ahjA-t2k-muscle.a2m.gz # 1ahjA read from T0287-1ahjA-t2k-muscle.a2m.gz # found chain 1ahjA in template set Warning: unaligning (T0287)R6 because first residue in template chain is (1ahjA)E10 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1ahjA 11 :NAAPAQAAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEE T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 1ahjA 52 :FSPRRGAELVARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1ahjA 76 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCS T0287 109 :LFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1ahjA 112 :LCSCTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1ahjA 166 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 5 number of extra gaps= 0 total=768 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1368301991.pdb -s /var/tmp/to_scwrl_1368301991.seq -o /var/tmp/from_scwrl_1368301991.pdb > /var/tmp/scwrl_1368301991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368301991.pdb Number of alignments=63 # command:# Prefix for input files set to 1alvA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-fssp-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-fssp-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIADS 1alvA 95 :EVRQFRRLFAQLAGD T0287 19 :KEKLIESLQ 1alvA 115 :ATELMNILN T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKV 1alvA 137 :FGIDTCRSMVAVMDSDTTGKLGFEEF T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1alvA 165 :LWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAA T0287 100 :HAIAENPNFLFSKFD 1alvA 202 :HLNEHLYSMIIRRYS T0287 120 :IFLPFFSKPIMFKMSIREMDSQIELYGT 1alvA 222 :MDFDNFISCLVRLDAMFRAFKSLDKDGT T0287 184 :KFDLEKYMK 1alvA 253 :QVNIQEWLQ T0287 195 :GVQNA 1alvA 262 :LTMYS Number of specific fragments extracted= 9 number of extra gaps= 0 total=777 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_37918026.pdb -s /var/tmp/to_scwrl_37918026.seq -o /var/tmp/from_scwrl_37918026.pdb > /var/tmp/scwrl_37918026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_37918026.pdb Number of alignments=64 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-fssp-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-fssp-local-adpstyle5.a2m # found chain 1alvA in template set T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKV 1alvA 134 :TDGFGIDTCRSMVAVMDSDTTGKLGFEEF T0287 65 :LRNYMKDYRAVIKSIGVDKF 1alvA 165 :LWNNIKKWQAIYKQFDVDRS Number of specific fragments extracted= 2 number of extra gaps= 0 total=779 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1066981825.pdb -s /var/tmp/to_scwrl_1066981825.seq -o /var/tmp/from_scwrl_1066981825.pdb > /var/tmp/scwrl_1066981825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066981825.pdb Number of alignments=65 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-global-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t04-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 26 :LQ 1alvA 108 :GD T0287 29 :NELLNTDEKKKIIDQIKTM 1alvA 110 :DMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLLES 1alvA 155 :GKLGFEEFKYLWNNIKK T0287 151 :LLKLFVMTD 1alvA 172 :WQAIYKQFD T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 197 :EAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDA Number of specific fragments extracted= 7 number of extra gaps= 1 total=786 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_11317492.pdb -s /var/tmp/to_scwrl_11317492.seq -o /var/tmp/from_scwrl_11317492.pdb > /var/tmp/scwrl_11317492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_11317492.pdb Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t04-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)Q197 because last residue in template chain is (1alvA)S266 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 26 :LQ 1alvA 108 :GD T0287 29 :NELLNTDEKKKIIDQIKTM 1alvA 110 :DMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 78 :SIGVDKFKKVYRLLES 1alvA 156 :KLGFEEFKYLWNNIKK T0287 151 :LLKLFVMTD 1alvA 172 :WQAIYKQFD T0287 160 :EEVN 1alvA 206 :HLYS T0287 164 :FYANLKTI 1alvA 227 :FISCLVRL T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGV 1alvA 241 :FKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 9 number of extra gaps= 1 total=795 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1628170677.pdb -s /var/tmp/to_scwrl_1628170677.seq -o /var/tmp/from_scwrl_1628170677.pdb > /var/tmp/scwrl_1628170677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628170677.pdb Number of alignments=67 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-local-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t04-local-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D42 because first residue in template chain is (1alvA)E94 T0287 43 :QIKTMHDFFKQMHTNKGALDK 1alvA 95 :EVRQFRRLFAQLAGDDMEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=796 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1382624262.pdb -s /var/tmp/to_scwrl_1382624262.seq -o /var/tmp/from_scwrl_1382624262.pdb > /var/tmp/scwrl_1382624262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382624262.pdb Number of alignments=68 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t04-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t04-local-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 43 :QIKTMHDFFKQMHTNKGALDKV 1alvA 95 :EVRQFRRLFAQLAGDDMEVSAT T0287 65 :LRNYMKDYRAV 1alvA 118 :LMNILNKVVTR T0287 78 :SIGVDKF 1alvA 131 :DLKTDGF T0287 85 :KKVYRLLES 1alvA 163 :KYLWNNIKK T0287 106 :PNFLFSKFDR 1alvA 172 :WQAIYKQFDV Number of specific fragments extracted= 5 number of extra gaps= 1 total=801 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1824845241.pdb -s /var/tmp/to_scwrl_1824845241.seq -o /var/tmp/from_scwrl_1824845241.pdb > /var/tmp/scwrl_1824845241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1824845241.pdb Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-global-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t06-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)Q197 because last residue in template chain is (1alvA)S266 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 15 :SKDK 1alvA 108 :GDDM T0287 31 :LLNTDEKKKIIDQIKTM 1alvA 112 :EVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDR 1alvA 170 :KKWQAIYKQFDV T0287 116 :SILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1alvA 186 :TIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQ T0287 185 :FDLEKYMKEKGV 1alvA 254 :VNIQEWLQLTMY Number of specific fragments extracted= 8 number of extra gaps= 1 total=809 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_799184730.pdb -s /var/tmp/to_scwrl_799184730.seq -o /var/tmp/from_scwrl_799184730.pdb > /var/tmp/scwrl_799184730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_799184730.pdb Number of alignments=70 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t06-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)Q197 because last residue in template chain is (1alvA)S266 T0287 2 :SNNMRKLFSMIA 1alvA 96 :VRQFRRLFAQLA T0287 15 :SKDK 1alvA 108 :GDDM T0287 31 :LLNTDEKKKIIDQIKTM 1alvA 112 :EVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDRS 1alvA 170 :KKWQAIYKQFDVD T0287 118 :LGIFLPF 1alvA 193 :PGAFEAA T0287 130 :MFKMSIREMDSQIELYG 1alvA 200 :GFHLNEHLYSMIIRRYS T0287 148 :NL 1alvA 217 :DE T0287 153 :KLFVMTDEEVNFYANLKT 1alvA 219 :GGNMDFDNFISCLVRLDA T0287 171 :IEQYNDYVRDLLMKFDLEKYMKEKGV 1alvA 240 :AFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 11 number of extra gaps= 1 total=820 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1325147587.pdb -s /var/tmp/to_scwrl_1325147587.seq -o /var/tmp/from_scwrl_1325147587.pdb > /var/tmp/scwrl_1325147587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1325147587.pdb Number of alignments=71 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-local-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t06-local-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 28 :ENELLNTDEKKKIIDQIKTM 1alvA 109 :DDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDR 1alvA 170 :KKWQAIYKQFDV Number of specific fragments extracted= 4 number of extra gaps= 1 total=824 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_737274709.pdb -s /var/tmp/to_scwrl_737274709.seq -o /var/tmp/from_scwrl_737274709.pdb > /var/tmp/scwrl_737274709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_737274709.pdb Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t06-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t06-local-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 31 :LLNTDEKKKIIDQIKTM 1alvA 112 :EVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRLL 1alvA 155 :GKLGFEEFKYLWNNI T0287 104 :ENPNFLFSKFDRS 1alvA 170 :KKWQAIYKQFDVD Number of specific fragments extracted= 4 number of extra gaps= 1 total=828 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_174308460.pdb -s /var/tmp/to_scwrl_174308460.seq -o /var/tmp/from_scwrl_174308460.pdb > /var/tmp/scwrl_174308460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_174308460.pdb Number of alignments=73 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-global-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t2k-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 15 :SKDKK 1alvA 108 :GDDME T0287 32 :LNTDEKKKIIDQIKTM 1alvA 113 :VSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSD T0287 75 :VIKSIGVDKFKKVYRL 1alvA 153 :TTGKLGFEEFKYLWNN T0287 148 :NLPLLKLFVMTDE 1alvA 169 :IKKWQAIYKQFDV T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 198 :AAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDA Number of specific fragments extracted= 7 number of extra gaps= 1 total=835 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2053721522.pdb -s /var/tmp/to_scwrl_2053721522.seq -o /var/tmp/from_scwrl_2053721522.pdb > /var/tmp/scwrl_2053721522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2053721522.pdb Number of alignments=74 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-global-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t2k-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 15 :SKDKK 1alvA 108 :GDDME T0287 32 :LNTDEKKKIIDQIKTM 1alvA 113 :VSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYR 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTT T0287 77 :KSIGVDKFKKVYRL 1alvA 155 :GKLGFEEFKYLWNN T0287 103 :AENPNFLFSKFDRS 1alvA 169 :IKKWQAIYKQFDVD T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYG 1alvA 187 :IGSSELPGAFEAAGFHLNEHLYSMIIRRYS T0287 148 :NLPLL 1alvA 217 :DEGGN T0287 156 :VMTDEEVN 1alvA 222 :MDFDNFIS T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEK 1alvA 233 :RLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 11 number of extra gaps= 1 total=846 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2042619024.pdb -s /var/tmp/to_scwrl_2042619024.seq -o /var/tmp/from_scwrl_2042619024.pdb > /var/tmp/scwrl_2042619024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042619024.pdb Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-local-adpstyle1.a2m # 1alvA read from 1alvA-T0287-t2k-local-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D42 because first residue in template chain is (1alvA)E94 T0287 43 :QIKTMHDFFKQMHTNKGALDK 1alvA 95 :EVRQFRRLFAQLAGDDMEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=847 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1092941920.pdb -s /var/tmp/to_scwrl_1092941920.seq -o /var/tmp/from_scwrl_1092941920.pdb > /var/tmp/scwrl_1092941920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1092941920.pdb Number of alignments=76 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1alvA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1alvA-T0287-t2k-local-adpstyle5.a2m # 1alvA read from 1alvA-T0287-t2k-local-adpstyle5.a2m # found chain 1alvA in template set T0287 78 :SIGVDKFKKVYRL 1alvA 156 :KLGFEEFKYLWNN T0287 103 :AENPNFLFSKFDR 1alvA 169 :IKKWQAIYKQFDV Number of specific fragments extracted= 2 number of extra gaps= 0 total=849 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_851509217.pdb -s /var/tmp/to_scwrl_851509217.seq -o /var/tmp/from_scwrl_851509217.pdb > /var/tmp/scwrl_851509217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_851509217.pdb Number of alignments=77 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-simplesw-adpstyle1.a2m # 1alvA read from T0287-1alvA-simplesw-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=850 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1052681739.pdb -s /var/tmp/to_scwrl_1052681739.seq -o /var/tmp/from_scwrl_1052681739.pdb > /var/tmp/scwrl_1052681739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052681739.pdb Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-simplesw-adpstyle5.a2m # 1alvA read from T0287-1alvA-simplesw-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGT Number of specific fragments extracted= 2 number of extra gaps= 0 total=852 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_968905429.pdb -s /var/tmp/to_scwrl_968905429.seq -o /var/tmp/from_scwrl_968905429.pdb > /var/tmp/scwrl_968905429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_968905429.pdb Number of alignments=79 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-adpstyle1.a2m # 1alvA read from T0287-1alvA-t04-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)E193 because last residue in template chain is (1alvA)S266 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 1alvA 97 :RQFRRLFAQLAGDDMEVSATELMNILNKVVTR T0287 37 :KKKI 1alvA 131 :DLKT T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG T0287 124 :FFSKPIMFKMSIREMDSQ 1alvA 201 :FHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 7 number of extra gaps= 1 total=859 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_404285862.pdb -s /var/tmp/to_scwrl_404285862.seq -o /var/tmp/from_scwrl_404285862.pdb > /var/tmp/scwrl_404285862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_404285862.pdb Number of alignments=80 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 40 :IIDQIKTMHDFFKQMHTNKGALD 1alvA 138 :GIDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYR 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGS T0287 96 :MELLHAI 1alvA 190 :SELPGAF T0287 104 :ENP 1alvA 197 :EAA T0287 123 :PFFSKPIMFKMSIREMDSQ 1alvA 200 :GFHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYV 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQ T0287 183 :MKFDLEKYMKEK 1alvA 252 :IQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 12 number of extra gaps= 1 total=871 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_265638477.pdb -s /var/tmp/to_scwrl_265638477.seq -o /var/tmp/from_scwrl_265638477.pdb > /var/tmp/scwrl_265638477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265638477.pdb Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 93 :SETMEL 1alvA 190 :SELPGA T0287 103 :AENPNFLFSKFDRSI 1alvA 196 :FEAAGFHLNEHLYSM T0287 134 :SIREMDSQ 1alvA 211 :IIRRYSDE T0287 146 :GTNLPL 1alvA 219 :GGNMDF T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 12 number of extra gaps= 1 total=883 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2124038504.pdb -s /var/tmp/to_scwrl_2124038504.seq -o /var/tmp/from_scwrl_2124038504.pdb > /var/tmp/scwrl_2124038504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124038504.pdb Number of alignments=82 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQEN 1alvA 115 :ATELMNILNKV T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :ID 1alvA 139 :ID T0287 46 :TMHDFFKQMHTNK 1alvA 141 :TCRSMVAVMDSDT T0287 59 :GAL 1alvA 160 :EEF T0287 63 :KVLRNYMKDYRAVIKSI 1alvA 163 :KYLWNNIKKWQAIYKQF T0287 80 :GVDKFKKVYRLL 1alvA 188 :GSSELPGAFEAA T0287 92 :ESETMELLHAIAENPNFL 1alvA 205 :EHLYSMIIRRYSDEGGNM T0287 111 :S 1alvA 223 :D T0287 113 :F 1alvA 224 :F T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 14 number of extra gaps= 1 total=897 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1365357.pdb -s /var/tmp/to_scwrl_1365357.seq -o /var/tmp/from_scwrl_1365357.pdb > /var/tmp/scwrl_1365357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1365357.pdb Number of alignments=83 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-adpstyle1.a2m # 1alvA read from T0287-1alvA-t04-local-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=898 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_280404016.pdb -s /var/tmp/to_scwrl_280404016.seq -o /var/tmp/from_scwrl_280404016.pdb > /var/tmp/scwrl_280404016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280404016.pdb Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-local-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=900 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_818832083.pdb -s /var/tmp/to_scwrl_818832083.seq -o /var/tmp/from_scwrl_818832083.pdb > /var/tmp/scwrl_818832083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_818832083.pdb Number of alignments=85 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 4 :NMRKLFSMIADSKDK 1alvA 98 :QFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 84 :FKKVY 1alvA 192 :LPGAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=906 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1518134336.pdb -s /var/tmp/to_scwrl_1518134336.seq -o /var/tmp/from_scwrl_1518134336.pdb > /var/tmp/scwrl_1518134336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518134336.pdb Number of alignments=86 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set T0287 15 :SKDKKEKLIESLQENE 1alvA 138 :GIDTCRSMVAVMDSDT T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNK 1alvA 156 :KLGFEEFKYLWNNIKKWQAIYKQFDVDR T0287 69 :MKDYRAVIKSIGVDKFKKVYRL 1alvA 189 :SSELPGAFEAAGFHLNEHLYSM T0287 98 :LLHAIAENPN 1alvA 211 :IIRRYSDEGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=910 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1001472755.pdb -s /var/tmp/to_scwrl_1001472755.seq -o /var/tmp/from_scwrl_1001472755.pdb > /var/tmp/scwrl_1001472755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001472755.pdb Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-adpstyle1.a2m # 1alvA read from T0287-1alvA-t06-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)E193 because last residue in template chain is (1alvA)S266 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 1alvA 97 :RQFRRLFAQLAGDDMEVSATELMNILNKVVTR T0287 37 :KKKI 1alvA 131 :DLKT T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG T0287 124 :FFSKPIMFKMSIREMDSQ 1alvA 201 :FHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 7 number of extra gaps= 1 total=917 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_335296552.pdb -s /var/tmp/to_scwrl_335296552.seq -o /var/tmp/from_scwrl_335296552.pdb > /var/tmp/scwrl_335296552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_335296552.pdb Number of alignments=88 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 40 :IIDQIKTMHDFFKQMHTNKGALD 1alvA 138 :GIDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYR 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGS T0287 96 :MELLHAI 1alvA 190 :SELPGAF T0287 104 :ENP 1alvA 197 :EAA T0287 123 :PFFSKPIMFKMSIREMDSQ 1alvA 200 :GFHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYV 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQ T0287 183 :MKFDLEKYMKEK 1alvA 252 :IQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 12 number of extra gaps= 1 total=929 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1588762737.pdb -s /var/tmp/to_scwrl_1588762737.seq -o /var/tmp/from_scwrl_1588762737.pdb > /var/tmp/scwrl_1588762737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1588762737.pdb Number of alignments=89 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 93 :SETMEL 1alvA 190 :SELPGA T0287 103 :AENPNFLFSKFDRSI 1alvA 196 :FEAAGFHLNEHLYSM T0287 134 :SIREMDSQ 1alvA 211 :IIRRYSDE T0287 146 :GTNLPL 1alvA 219 :GGNMDF T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 12 number of extra gaps= 1 total=941 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_837694874.pdb -s /var/tmp/to_scwrl_837694874.seq -o /var/tmp/from_scwrl_837694874.pdb > /var/tmp/scwrl_837694874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_837694874.pdb Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQEN 1alvA 115 :ATELMNILNKV T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :ID 1alvA 139 :ID T0287 46 :TMHDFFKQMHTNK 1alvA 141 :TCRSMVAVMDSDT T0287 59 :GAL 1alvA 160 :EEF T0287 63 :KVLRNYMKDYRAVIKSI 1alvA 163 :KYLWNNIKKWQAIYKQF T0287 80 :GVDKFKKVYRLL 1alvA 188 :GSSELPGAFEAA T0287 92 :ESETMELLHAIAENPNFL 1alvA 205 :EHLYSMIIRRYSDEGGNM T0287 111 :S 1alvA 223 :D T0287 113 :F 1alvA 224 :F T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 14 number of extra gaps= 1 total=955 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1888673560.pdb -s /var/tmp/to_scwrl_1888673560.seq -o /var/tmp/from_scwrl_1888673560.pdb > /var/tmp/scwrl_1888673560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888673560.pdb Number of alignments=91 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-adpstyle1.a2m # 1alvA read from T0287-1alvA-t06-local-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=956 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2030680541.pdb -s /var/tmp/to_scwrl_2030680541.seq -o /var/tmp/from_scwrl_2030680541.pdb > /var/tmp/scwrl_2030680541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2030680541.pdb Number of alignments=92 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-local-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=958 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1151258381.pdb -s /var/tmp/to_scwrl_1151258381.seq -o /var/tmp/from_scwrl_1151258381.pdb > /var/tmp/scwrl_1151258381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1151258381.pdb Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 4 :NMRKLFSMIADSKDK 1alvA 98 :QFRRLFAQLAGDDME T0287 19 :KEKLIESLQE 1alvA 119 :MNILNKVVTR T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR T0287 84 :FKKVY 1alvA 192 :LPGAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=964 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1109491904.pdb -s /var/tmp/to_scwrl_1109491904.seq -o /var/tmp/from_scwrl_1109491904.pdb > /var/tmp/scwrl_1109491904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1109491904.pdb Number of alignments=94 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set T0287 15 :SKDKKEKLIESLQENE 1alvA 138 :GIDTCRSMVAVMDSDT T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNK 1alvA 156 :KLGFEEFKYLWNNIKKWQAIYKQFDVDR T0287 69 :MKDYRAVIKSIGVDKFKKVYRL 1alvA 189 :SSELPGAFEAAGFHLNEHLYSM T0287 98 :LLHAIAENPN 1alvA 211 :IIRRYSDEGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=968 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2068598567.pdb -s /var/tmp/to_scwrl_2068598567.seq -o /var/tmp/from_scwrl_2068598567.pdb > /var/tmp/scwrl_2068598567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2068598567.pdb Number of alignments=95 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-adpstyle1.a2m # 1alvA read from T0287-1alvA-t2k-global-adpstyle1.a2m # found chain 1alvA in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 Warning: unaligning (T0287)E193 because last residue in template chain is (1alvA)S266 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 1alvA 97 :RQFRRLFAQLAGDDMEVSATELMNILNKVVTR T0287 37 :KKKI 1alvA 131 :DLKT T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG T0287 124 :FFSKPIMFKMSIREMDSQ 1alvA 201 :FHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMY Number of specific fragments extracted= 7 number of extra gaps= 1 total=975 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_70756560.pdb -s /var/tmp/to_scwrl_70756560.seq -o /var/tmp/from_scwrl_70756560.pdb > /var/tmp/scwrl_70756560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70756560.pdb Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-global-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 40 :IIDQIKTMHDFFKQMHTNKGALD 1alvA 138 :GIDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYR 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIGS T0287 96 :MELLHAI 1alvA 190 :SELPGAF T0287 104 :ENP 1alvA 197 :EAA T0287 123 :PFFSKPIMFKMSIREMDSQ 1alvA 200 :GFHLNEHLYSMIIRRYSDE T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYV 1alvA 219 :GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQ T0287 183 :MKFDLEKYMKEK 1alvA 252 :IQVNIQEWLQLT T0287 197 :QNA 1alvA 264 :MYS Number of specific fragments extracted= 12 number of extra gaps= 1 total=987 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1120809396.pdb -s /var/tmp/to_scwrl_1120809396.seq -o /var/tmp/from_scwrl_1120809396.pdb > /var/tmp/scwrl_1120809396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120809396.pdb Number of alignments=97 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVY 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTIG T0287 92 :ESETME 1alvA 189 :SSELPG T0287 102 :IAENPNFLFSKFDRSI 1alvA 195 :AFEAAGFHLNEHLYSM T0287 134 :SIREMDSQ 1alvA 211 :IIRRYSDE T0287 146 :GTNLPL 1alvA 219 :GGNMDF T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 12 number of extra gaps= 1 total=999 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1549285598.pdb -s /var/tmp/to_scwrl_1549285598.seq -o /var/tmp/from_scwrl_1549285598.pdb > /var/tmp/scwrl_1549285598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1549285598.pdb Number of alignments=98 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MS 1alvA 94 :EE T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQEN 1alvA 115 :ATELMNILNKV T0287 31 :LLNTDE 1alvA 131 :DLKTDG T0287 41 :ID 1alvA 139 :ID T0287 46 :TMHDFFKQMHTNK 1alvA 141 :TCRSMVAVMDSDT T0287 59 :GAL 1alvA 160 :EEF T0287 63 :KVLRNYMKDYRAVIKSI 1alvA 163 :KYLWNNIKKWQAIYKQF T0287 80 :GVDKFKKVYRLL 1alvA 188 :GSSELPGAFEAA T0287 92 :ESETMELLHAIAENPNFL 1alvA 205 :EHLYSMIIRRYSDEGGNM T0287 111 :S 1alvA 223 :D T0287 113 :F 1alvA 224 :F T0287 162 :VNFYANLKTIEQYNDYVRDL 1alvA 225 :DNFISCLVRLDAMFRAFKSL T0287 183 :MKFDLEKYMKEKGV 1alvA 252 :IQVNIQEWLQLTMY Number of specific fragments extracted= 14 number of extra gaps= 1 total=1013 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1453380822.pdb -s /var/tmp/to_scwrl_1453380822.seq -o /var/tmp/from_scwrl_1453380822.pdb > /var/tmp/scwrl_1453380822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1453380822.pdb Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-adpstyle1.a2m # 1alvA read from T0287-1alvA-t2k-local-adpstyle1.a2m # found chain 1alvA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDK 1alvA 163 :KYLWNNIKKWQAIYKQFDVDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1014 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_798170991.pdb -s /var/tmp/to_scwrl_798170991.seq -o /var/tmp/from_scwrl_798170991.pdb > /var/tmp/scwrl_798170991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_798170991.pdb Number of alignments=100 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-local-adpstyle5.a2m # found chain 1alvA in template set T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1016 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_200986681.pdb -s /var/tmp/to_scwrl_200986681.seq -o /var/tmp/from_scwrl_200986681.pdb > /var/tmp/scwrl_200986681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_200986681.pdb Number of alignments=101 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1alvA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 3 :NNMRKLFSMIADSKDK 1alvA 97 :RQFRRLFAQLAGDDME T0287 19 :KEKLIESLQENELL 1alvA 115 :ATELMNILNKVVTR T0287 35 :DEKKK 1alvA 131 :DLKTD T0287 41 :IDQIKTMHDFFKQMHTNKGALD 1alvA 139 :IDTCRSMVAVMDSDTTGKLGFE T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKV 1alvA 163 :KYLWNNIKKWQAIYKQFDVDRSGTI T0287 91 :LESETMELLHAI 1alvA 188 :GSSELPGAFEAA T0287 107 :N 1alvA 200 :G Number of specific fragments extracted= 7 number of extra gaps= 1 total=1023 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_631044763.pdb -s /var/tmp/to_scwrl_631044763.seq -o /var/tmp/from_scwrl_631044763.pdb > /var/tmp/scwrl_631044763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_631044763.pdb Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1alvA read from T0287-1alvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1alvA in template set T0287 15 :SKDKKEKLIESLQENE 1alvA 138 :GIDTCRSMVAVMDSDT T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNK 1alvA 156 :KLGFEEFKYLWNNIKKWQAIYKQFDVDR T0287 69 :MKDYRAVIKSIGVDKFKKVYRL 1alvA 189 :SSELPGAFEAAGFHLNEHLYSM T0287 98 :LLHAIAENPN 1alvA 211 :IIRRYSDEGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1027 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1535445699.pdb -s /var/tmp/to_scwrl_1535445699.seq -o /var/tmp/from_scwrl_1535445699.pdb > /var/tmp/scwrl_1535445699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1535445699.pdb Number of alignments=103 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1alvA-t04-muscle.a2m.gz # 1alvA read from T0287-1alvA-t04-muscle.a2m.gz # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIA 1alvA 95 :EVRQFRRLFAQLA T0287 27 :QENELLNTDEKKKIIDQIKTM 1alvA 108 :GDDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRA 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTTG T0287 78 :SIGVDKFKKVYRLLE 1alvA 156 :KLGFEEFKYLWNNIK T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIE 1alvA 171 :KWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYS T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 210 :MIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW Number of specific fragments extracted= 6 number of extra gaps= 1 total=1033 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_375295141.pdb -s /var/tmp/to_scwrl_375295141.seq -o /var/tmp/from_scwrl_375295141.pdb > /var/tmp/scwrl_375295141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_375295141.pdb Number of alignments=104 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1alvA-t06-muscle.a2m.gz # 1alvA read from T0287-1alvA-t06-muscle.a2m.gz # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIAD 1alvA 95 :EVRQFRRLFAQLAG T0287 28 :ENELLNTDEKKKIIDQIKTM 1alvA 109 :DDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRA 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTTG T0287 78 :SIGVDKFKKVYRLLE 1alvA 156 :KLGFEEFKYLWNNIK T0287 105 :NPNFLFSKFDRSILG 1alvA 171 :KWQAIYKQFDVDRSG T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1alvA 186 :TIGSSELPGAFEAAGFHLNEHLYSMIIRR T0287 165 :YANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 215 :YSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGT Number of specific fragments extracted= 7 number of extra gaps= 1 total=1040 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_537282638.pdb -s /var/tmp/to_scwrl_537282638.seq -o /var/tmp/from_scwrl_537282638.pdb > /var/tmp/scwrl_537282638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_537282638.pdb Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1alvA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1alvA-t2k-muscle.a2m.gz # 1alvA read from T0287-1alvA-t2k-muscle.a2m.gz # found chain 1alvA in template set Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1alvA)P130 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (1alvA)P130 T0287 1 :MSNNMRKLFSMIAD 1alvA 95 :EVRQFRRLFAQLAG T0287 28 :ENELLNTDEKKKIIDQIKTM 1alvA 109 :DDMEVSATELMNILNKVVTR T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRA 1alvA 131 :DLKTDGFGIDTCRSMVAVMDSDTTG T0287 78 :SIGVDKFKKVYRLLE 1alvA 156 :KLGFEEFKYLWNNIK T0287 105 :NPNFLFSKFDRSILG 1alvA 171 :KWQAIYKQFDVDRSG T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1alvA 186 :TIGSSELPGAFEAAGFHLNEHLYSMIIRR T0287 165 :YANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1alvA 215 :YSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGT Number of specific fragments extracted= 7 number of extra gaps= 1 total=1047 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1430581076.pdb -s /var/tmp/to_scwrl_1430581076.seq -o /var/tmp/from_scwrl_1430581076.pdb > /var/tmp/scwrl_1430581076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1430581076.pdb Number of alignments=106 # command:# Prefix for input files set to 1b0b/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-global-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t04-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)D186 because last residue in template chain is (1b0b)M142 T0287 1 :MSNNMRKLFSMIADSKDKK 1b0b 25 :GPEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 77 :KSIGVD 1b0b 97 :KARGIS T0287 85 :KKVYRLLESETMELLH 1b0b 103 :AGQLEAAFKVLAGFMK T0287 163 :NFYANLKTIEQYNDYVRDLLMKF 1b0b 119 :SYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1053 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1468237061.pdb -s /var/tmp/to_scwrl_1468237061.seq -o /var/tmp/from_scwrl_1468237061.pdb > /var/tmp/scwrl_1468237061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1468237061.pdb Number of alignments=107 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-global-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t04-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRKLFSMIADSKDKK 1b0b 27 :EFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 76 :IKSIGVDKFKKVYRLLE 1b0b 98 :ARGISAGQLEAAFKVLA T0287 94 :ETME 1b0b 115 :GFMK T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1b0b 119 :SYGGDEGAWTAVAGALMGMIRP T0287 189 :K 1b0b 141 :D Number of specific fragments extracted= 7 number of extra gaps= 2 total=1060 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1388791854.pdb -s /var/tmp/to_scwrl_1388791854.seq -o /var/tmp/from_scwrl_1388791854.pdb > /var/tmp/scwrl_1388791854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1388791854.pdb Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-local-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t04-local-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLL 1b0b 97 :KARGISAGQLEAAFKVL Number of specific fragments extracted= 4 number of extra gaps= 2 total=1064 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_335779168.pdb -s /var/tmp/to_scwrl_335779168.seq -o /var/tmp/from_scwrl_335779168.pdb > /var/tmp/scwrl_335779168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_335779168.pdb Number of alignments=109 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t04-local-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t04-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 76 :IKSIGVDKFKKVYRLLE 1b0b 98 :ARGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 2 total=1068 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_289658844.pdb -s /var/tmp/to_scwrl_289658844.seq -o /var/tmp/from_scwrl_289658844.pdb > /var/tmp/scwrl_289658844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_289658844.pdb Number of alignments=110 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-global-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t06-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 2 :SNNMRKLFSMIADSKDKK 1b0b 26 :PEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRL 1b0b 97 :KARGISAGQLEAAFKV T0287 98 :LLHAIAE 1b0b 113 :LAGFMKS T0287 164 :FYANLKTIEQYNDYVRDLLMK 1b0b 120 :YGGDEGAWTAVAGALMGMIRP T0287 189 :K 1b0b 141 :D Number of specific fragments extracted= 7 number of extra gaps= 2 total=1075 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1793077717.pdb -s /var/tmp/to_scwrl_1793077717.seq -o /var/tmp/from_scwrl_1793077717.pdb > /var/tmp/scwrl_1793077717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793077717.pdb Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-global-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t06-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 2 :SNNMRKLFSMIADSKDKK 1b0b 26 :PEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 96 :MELLHA 1b0b 114 :AGFMKS T0287 164 :FYANLKTIEQYNDYVRDLLMK 1b0b 120 :YGGDEGAWTAVAGALMGMIRP T0287 189 :K 1b0b 141 :D Number of specific fragments extracted= 7 number of extra gaps= 2 total=1082 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_601417645.pdb -s /var/tmp/to_scwrl_601417645.seq -o /var/tmp/from_scwrl_601417645.pdb > /var/tmp/scwrl_601417645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_601417645.pdb Number of alignments=112 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-local-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t06-local-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLL 1b0b 97 :KARGISAGQLEAAFKVL Number of specific fragments extracted= 4 number of extra gaps= 2 total=1086 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_266213701.pdb -s /var/tmp/to_scwrl_266213701.seq -o /var/tmp/from_scwrl_266213701.pdb > /var/tmp/scwrl_266213701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_266213701.pdb Number of alignments=113 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t06-local-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t06-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 6 :RKLFSMIADSKDKK 1b0b 30 :MALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 2 total=1090 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1794443074.pdb -s /var/tmp/to_scwrl_1794443074.seq -o /var/tmp/from_scwrl_1794443074.pdb > /var/tmp/scwrl_1794443074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794443074.pdb Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-global-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t2k-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)I129 because last residue in template chain is (1b0b)M142 T0287 1 :MSNNMRKLFSMIADSKDKK 1b0b 25 :GPEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLLESETMELLH 1b0b 97 :KARGISAGQLEAAFKVLAGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1b0b 123 :DEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 5 number of extra gaps= 2 total=1095 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_881821662.pdb -s /var/tmp/to_scwrl_881821662.seq -o /var/tmp/from_scwrl_881821662.pdb > /var/tmp/scwrl_881821662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_881821662.pdb Number of alignments=115 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-global-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t2k-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)I129 because last residue in template chain is (1b0b)M142 T0287 1 :MSNNMRKLFSMIADSKDKK 1b0b 25 :GPEFFMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLLESETMELLH 1b0b 97 :KARGISAGQLEAAFKVLAGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1b0b 123 :DEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 5 number of extra gaps= 2 total=1100 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1085045783.pdb -s /var/tmp/to_scwrl_1085045783.seq -o /var/tmp/from_scwrl_1085045783.pdb > /var/tmp/scwrl_1085045783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1085045783.pdb Number of alignments=116 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-local-adpstyle1.a2m # 1b0b read from 1b0b-T0287-t2k-local-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLL 1b0b 97 :KARGISAGQLEAAFKVL Number of specific fragments extracted= 4 number of extra gaps= 2 total=1104 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1165093763.pdb -s /var/tmp/to_scwrl_1165093763.seq -o /var/tmp/from_scwrl_1165093763.pdb > /var/tmp/scwrl_1165093763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1165093763.pdb Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b0b-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b0b-T0287-t2k-local-adpstyle5.a2m # 1b0b read from 1b0b-T0287-t2k-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADSKDKK 1b0b 29 :FMALFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 75 :VIKSIGVDKFKKVYRLLE 1b0b 97 :KARGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 2 total=1108 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1883294416.pdb -s /var/tmp/to_scwrl_1883294416.seq -o /var/tmp/from_scwrl_1883294416.pdb > /var/tmp/scwrl_1883294416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1883294416.pdb Number of alignments=118 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fal-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2fal-T0287-fssp-global-adpstyle5.a2m # 1b0b read from 2fal-T0287-fssp-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)M133 because last residue in template chain is (1b0b)M142 T0287 2 :SNNMRKLF 1b0b 3 :SAAQKDNV T0287 10 :SMIADSK 1b0b 34 :DAHDDVF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKII 1b0b 56 :KNTPEMAAQA T0287 42 :DQIKTMHDFFKQ 1b0b 67 :SFKGLVSNWVDN T0287 55 :HTNKGALDKVLRNYMKDYRAV 1b0b 79 :LDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMEL 1b0b 100 :GISAGQLEAAFKVLAGFMKSY T0287 112 :KFDRSILGIFLPFFSKPIMFK 1b0b 121 :GGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 8 number of extra gaps= 2 total=1116 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1420342336.pdb -s /var/tmp/to_scwrl_1420342336.seq -o /var/tmp/from_scwrl_1420342336.pdb > /var/tmp/scwrl_1420342336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420342336.pdb Number of alignments=119 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fal-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2fal-T0287-fssp-local-adpstyle5.a2m # 1b0b read from 2fal-T0287-fssp-local-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 25 :SLQEN 1b0b 49 :GAAKG T0287 32 :LNTDEKKKII 1b0b 56 :KNTPEMAAQA T0287 42 :DQIKTMHDFFKQ 1b0b 67 :SFKGLVSNWVDN T0287 55 :HTNKGALDKVLRNYMKDYRAV 1b0b 79 :LDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMEL 1b0b 100 :GISAGQLEAAFKVLAGFMKSY Number of specific fragments extracted= 5 number of extra gaps= 1 total=1121 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_606372854.pdb -s /var/tmp/to_scwrl_606372854.seq -o /var/tmp/from_scwrl_606372854.pdb > /var/tmp/scwrl_606372854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_606372854.pdb Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-simplesw-adpstyle1.a2m # 1b0b read from T0287-1b0b-simplesw-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1123 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_573505643.pdb -s /var/tmp/to_scwrl_573505643.seq -o /var/tmp/from_scwrl_573505643.pdb > /var/tmp/scwrl_573505643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573505643.pdb Number of alignments=121 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-simplesw-adpstyle5.a2m # 1b0b read from T0287-1b0b-simplesw-adpstyle5.a2m # found chain 1b0b in training set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 69 :KGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1b0b 111 :KVLAGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1125 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1161532249.pdb -s /var/tmp/to_scwrl_1161532249.seq -o /var/tmp/from_scwrl_1161532249.pdb > /var/tmp/scwrl_1161532249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1161532249.pdb Number of alignments=122 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-adpstyle1.a2m # 1b0b read from T0287-1b0b-t04-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFDLEK 1b0b 114 :AGFMKSYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1131 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_489569748.pdb -s /var/tmp/to_scwrl_489569748.seq -o /var/tmp/from_scwrl_489569748.pdb > /var/tmp/scwrl_489569748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_489569748.pdb Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARG T0287 79 :IGVDKFKKVYRLLES 1b0b 101 :ISAGQLEAAFKVLAG T0287 141 :QIELYGT 1b0b 116 :FMKSYGG T0287 171 :IEQYNDYVRDLLMKFD 1b0b 123 :DEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 2 total=1139 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1724764025.pdb -s /var/tmp/to_scwrl_1724764025.seq -o /var/tmp/from_scwrl_1724764025.pdb > /var/tmp/scwrl_1724764025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724764025.pdb Number of alignments=124 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKKEK 1b0b 28 :FFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1b0b 115 :GFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 7 number of extra gaps= 1 total=1146 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_123540508.pdb -s /var/tmp/to_scwrl_123540508.seq -o /var/tmp/from_scwrl_123540508.pdb > /var/tmp/scwrl_123540508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_123540508.pdb Number of alignments=125 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRKLFSMI 1b0b 8 :DNVKSSWAKA T0287 13 :A 1b0b 19 :A T0287 16 :KDKKEKLIESLQE 1b0b 22 :GTAGPEFFMALFD T0287 29 :N 1b0b 53 :G T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 110 :FSK 1b0b 117 :MKS T0287 164 :FYANLKTIEQYNDYVRDLLM 1b0b 120 :YGGDEGAWTAVAGALMGMIR T0287 197 :QNA 1b0b 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 2 total=1155 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_410684669.pdb -s /var/tmp/to_scwrl_410684669.seq -o /var/tmp/from_scwrl_410684669.pdb > /var/tmp/scwrl_410684669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410684669.pdb Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-adpstyle1.a2m # 1b0b read from T0287-1b0b-t04-local-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1157 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1795520585.pdb -s /var/tmp/to_scwrl_1795520585.seq -o /var/tmp/from_scwrl_1795520585.pdb > /var/tmp/scwrl_1795520585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795520585.pdb Number of alignments=127 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-local-adpstyle5.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDY 1b0b 111 :KVLAGFMKSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1159 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1244349904.pdb -s /var/tmp/to_scwrl_1244349904.seq -o /var/tmp/from_scwrl_1244349904.pdb > /var/tmp/scwrl_1244349904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244349904.pdb Number of alignments=128 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 6 :RKLFSMIADSKDKKEK 1b0b 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 1 total=1163 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1959970267.pdb -s /var/tmp/to_scwrl_1959970267.seq -o /var/tmp/from_scwrl_1959970267.pdb > /var/tmp/scwrl_1959970267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1959970267.pdb Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADS 1b0b 25 :GPEFFMALFDA T0287 19 :KEKLIESL 1b0b 36 :HDDVFAKF T0287 28 :EN 1b0b 52 :KG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 95 :TMELLHAIAE 1b0b 123 :DEGAWTAVAG Number of specific fragments extracted= 6 number of extra gaps= 2 total=1169 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1101417760.pdb -s /var/tmp/to_scwrl_1101417760.seq -o /var/tmp/from_scwrl_1101417760.pdb > /var/tmp/scwrl_1101417760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101417760.pdb Number of alignments=130 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-adpstyle1.a2m # 1b0b read from T0287-1b0b-t06-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFDLEK 1b0b 114 :AGFMKSYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1175 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2042520896.pdb -s /var/tmp/to_scwrl_2042520896.seq -o /var/tmp/from_scwrl_2042520896.pdb > /var/tmp/scwrl_2042520896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042520896.pdb Number of alignments=131 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARG T0287 79 :IGVDKFKKVYRLLES 1b0b 101 :ISAGQLEAAFKVLAG T0287 141 :QIELYGT 1b0b 116 :FMKSYGG T0287 171 :IEQYNDYVRDLLMKFD 1b0b 123 :DEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 2 total=1183 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_13473301.pdb -s /var/tmp/to_scwrl_13473301.seq -o /var/tmp/from_scwrl_13473301.pdb > /var/tmp/scwrl_13473301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13473301.pdb Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKKEK 1b0b 28 :FFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1b0b 115 :GFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 7 number of extra gaps= 1 total=1190 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1732462524.pdb -s /var/tmp/to_scwrl_1732462524.seq -o /var/tmp/from_scwrl_1732462524.pdb > /var/tmp/scwrl_1732462524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732462524.pdb Number of alignments=133 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRKLFSMI 1b0b 8 :DNVKSSWAKA T0287 13 :A 1b0b 19 :A T0287 16 :KDKKEKLIESLQE 1b0b 22 :GTAGPEFFMALFD T0287 29 :N 1b0b 53 :G T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 110 :FSK 1b0b 117 :MKS T0287 164 :FYANLKTIEQYNDYVRDLLM 1b0b 120 :YGGDEGAWTAVAGALMGMIR T0287 197 :QNA 1b0b 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 2 total=1199 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1430482948.pdb -s /var/tmp/to_scwrl_1430482948.seq -o /var/tmp/from_scwrl_1430482948.pdb > /var/tmp/scwrl_1430482948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1430482948.pdb Number of alignments=134 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-adpstyle1.a2m # 1b0b read from T0287-1b0b-t06-local-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1201 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_388768443.pdb -s /var/tmp/to_scwrl_388768443.seq -o /var/tmp/from_scwrl_388768443.pdb > /var/tmp/scwrl_388768443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_388768443.pdb Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-local-adpstyle5.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDY 1b0b 111 :KVLAGFMKSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1203 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_122261515.pdb -s /var/tmp/to_scwrl_122261515.seq -o /var/tmp/from_scwrl_122261515.pdb > /var/tmp/scwrl_122261515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_122261515.pdb Number of alignments=136 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 6 :RKLFSMIADSKDKKEK 1b0b 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA Number of specific fragments extracted= 4 number of extra gaps= 1 total=1207 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_713580379.pdb -s /var/tmp/to_scwrl_713580379.seq -o /var/tmp/from_scwrl_713580379.pdb > /var/tmp/scwrl_713580379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_713580379.pdb Number of alignments=137 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADS 1b0b 25 :GPEFFMALFDA T0287 19 :KEKLIESL 1b0b 36 :HDDVFAKF T0287 28 :EN 1b0b 52 :KG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 95 :TMELLHAIAE 1b0b 123 :DEGAWTAVAG Number of specific fragments extracted= 6 number of extra gaps= 2 total=1213 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1857005504.pdb -s /var/tmp/to_scwrl_1857005504.seq -o /var/tmp/from_scwrl_1857005504.pdb > /var/tmp/scwrl_1857005504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857005504.pdb Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-adpstyle1.a2m # 1b0b read from T0287-1b0b-t2k-global-adpstyle1.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)Y190 because last residue in template chain is (1b0b)M142 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLL 1b0b 99 :RGISAGQLEAAFKVL T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFDLEK 1b0b 114 :AGFMKSYGGDEGAWTAVAGALMGMIRPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=1219 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1511053370.pdb -s /var/tmp/to_scwrl_1511053370.seq -o /var/tmp/from_scwrl_1511053370.pdb > /var/tmp/scwrl_1511053370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1511053370.pdb Number of alignments=139 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-global-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKK 1b0b 32 :LFDAHDDVFAKF T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARG T0287 79 :IGVDKFKKVYRLLES 1b0b 101 :ISAGQLEAAFKVLAG T0287 141 :QIELYGT 1b0b 116 :FMKSYGG T0287 171 :IEQYNDYVRDLLMKFD 1b0b 123 :DEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 2 total=1227 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1049359547.pdb -s /var/tmp/to_scwrl_1049359547.seq -o /var/tmp/from_scwrl_1049359547.pdb > /var/tmp/scwrl_1049359547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1049359547.pdb Number of alignments=140 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRK 1b0b 3 :SAAQK T0287 8 :LFSMIADSKDKKEK 1b0b 28 :FFMALFDAHDDVFA T0287 22 :LIESLQEN 1b0b 46 :LFSGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1b0b 99 :RGISAGQLEAAFKVLA T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1b0b 115 :GFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 7 number of extra gaps= 1 total=1234 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2146664348.pdb -s /var/tmp/to_scwrl_2146664348.seq -o /var/tmp/from_scwrl_2146664348.pdb > /var/tmp/scwrl_2146664348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2146664348.pdb Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 3 :NNMRKLFSMI 1b0b 8 :DNVKSSWAKA T0287 13 :A 1b0b 19 :A T0287 16 :KDKKEKLIESLQE 1b0b 22 :GTAGPEFFMALFD T0287 29 :N 1b0b 53 :G T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 110 :FSK 1b0b 117 :MKS T0287 164 :FYANLKTIEQYNDYVRDLLM 1b0b 120 :YGGDEGAWTAVAGALMGMIR T0287 197 :QNA 1b0b 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 2 total=1243 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1156647440.pdb -s /var/tmp/to_scwrl_1156647440.seq -o /var/tmp/from_scwrl_1156647440.pdb > /var/tmp/scwrl_1156647440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156647440.pdb Number of alignments=142 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-adpstyle1.a2m # 1b0b read from T0287-1b0b-t2k-local-adpstyle1.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1b0b 111 :KVLAGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1245 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1650777192.pdb -s /var/tmp/to_scwrl_1650777192.seq -o /var/tmp/from_scwrl_1650777192.pdb > /var/tmp/scwrl_1650777192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650777192.pdb Number of alignments=143 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-local-adpstyle5.a2m # found chain 1b0b in training set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1b0b 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDY 1b0b 111 :KVLAGFMKSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1247 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_265394403.pdb -s /var/tmp/to_scwrl_265394403.seq -o /var/tmp/from_scwrl_265394403.pdb > /var/tmp/scwrl_265394403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265394403.pdb Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 24 :ESLQEN 1b0b 48 :SGAAKG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1b0b 99 :RGISAGQLEAAFKVLAG Number of specific fragments extracted= 3 number of extra gaps= 1 total=1250 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_803606868.pdb -s /var/tmp/to_scwrl_803606868.seq -o /var/tmp/from_scwrl_803606868.pdb > /var/tmp/scwrl_803606868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_803606868.pdb Number of alignments=145 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1b0b read from T0287-1b0b-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1b0b in training set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 5 :MRKLFSMIADS 1b0b 25 :GPEFFMALFDA T0287 19 :KEKLIESL 1b0b 36 :HDDVFAKF T0287 28 :EN 1b0b 52 :KG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1b0b 99 :RGISAGQLEAAFKVLAGF T0287 95 :TMELLHAIAE 1b0b 123 :DEGAWTAVAG Number of specific fragments extracted= 6 number of extra gaps= 2 total=1256 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_385115207.pdb -s /var/tmp/to_scwrl_385115207.seq -o /var/tmp/from_scwrl_385115207.pdb > /var/tmp/scwrl_385115207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_385115207.pdb Number of alignments=146 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1b0b-t04-muscle.a2m.gz # 1b0b read from T0287-1b0b-t04-muscle.a2m.gz # found chain 1b0b in training set Warning: unaligning (T0287)L32 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 33 :NTDEKKKIIDQIKTMHD 1b0b 3 :SAAQKDNVKSSWAKASA T0287 52 :KQMHT 1b0b 22 :GTAGP T0287 63 :KVLRNYMKDYRAVIK 1b0b 27 :EFFMALFDAHDDVFA T0287 83 :KF 1b0b 42 :KF T0287 87 :VYRLLESE 1b0b 46 :LFSGAAKG T0287 97 :ELLHAIAENPNFLFSKFDRSILGI 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNL T0287 126 :SKPIMFKMSIREMDSQIELYGTNLPLLKLF 1b0b 80 :DNAGALEGQCKTFAANHKARGISAGQLEAA T0287 156 :VMTDEEVNFYANLKTIEQYNDYVRDLL 1b0b 112 :VLAGFMKSYGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 9 number of extra gaps= 3 total=1265 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1350440186.pdb -s /var/tmp/to_scwrl_1350440186.seq -o /var/tmp/from_scwrl_1350440186.pdb > /var/tmp/scwrl_1350440186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350440186.pdb Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1b0b-t06-muscle.a2m.gz # 1b0b read from T0287-1b0b-t06-muscle.a2m.gz # found chain 1b0b in training set Warning: unaligning (T0287)L32 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 T0287 33 :NTDEKKKIIDQIKTMHD 1b0b 3 :SAAQKDNVKSSWAKASA T0287 52 :KQMHT 1b0b 22 :GTAGP T0287 63 :KVLRNYMKDYRAVIK 1b0b 27 :EFFMALFDAHDDVFA T0287 83 :KF 1b0b 42 :KF T0287 87 :VYRLLESE 1b0b 46 :LFSGAAKG T0287 97 :ELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1b0b 56 :KNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLAGFMKS T0287 164 :FYANLKTIEQYNDYVRDLL 1b0b 120 :YGGDEGAWTAVAGALMGMI T0287 196 :VQNA 1b0b 139 :RPDM Number of specific fragments extracted= 8 number of extra gaps= 3 total=1273 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1968700631.pdb -s /var/tmp/to_scwrl_1968700631.seq -o /var/tmp/from_scwrl_1968700631.pdb > /var/tmp/scwrl_1968700631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1968700631.pdb Number of alignments=148 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1b0b-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1b0b-t2k-muscle.a2m.gz # 1b0b read from T0287-1b0b-t2k-muscle.a2m.gz # found chain 1b0b in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1b0b)L2 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)W21 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)W21 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)G45 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)G45 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE in next template residue (1b0b)V55 Warning: unaligning (T0287)M96 because of BadResidue code BAD_PEPTIDE at template residue (1b0b)V55 Warning: unaligning (T0287)K194 because last residue in template chain is (1b0b)M142 T0287 3 :NN 1b0b 3 :SA T0287 42 :DQIKTMHDFFKQMHT 1b0b 5 :AQKDNVKSSWAKASA T0287 59 :GALD 1b0b 22 :GTAG T0287 63 :KVLRNYMKDYRAV 1b0b 27 :EFFMALFDAHDDV T0287 81 :VDKF 1b0b 40 :FAKF T0287 87 :VYRLLESE 1b0b 46 :LFSGAAKG T0287 97 :ELLHAIAENPNFLFSKFDR 1b0b 56 :KNTPEMAAQAQSFKGLVSN T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1b0b 75 :WVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKV T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1b0b 113 :LAGFMKSYGGDEGAWTAVAGAL T0287 187 :LEKYMKE 1b0b 135 :MGMIRPD Number of specific fragments extracted= 10 number of extra gaps= 3 total=1283 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_120925976.pdb -s /var/tmp/to_scwrl_120925976.seq -o /var/tmp/from_scwrl_120925976.pdb > /var/tmp/scwrl_120925976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_120925976.pdb Number of alignments=149 # command:# Prefix for input files set to 1c02A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-global-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t04-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALG T0287 68 :YMKDYRAVIKSIG 1c02A 77 :RIAWVCERIQNLG T0287 81 :VDKFKKVYRLLESE 1c02A 96 :FPNKTELVNTLSDK T0287 97 :ELLHAIAENPN 1c02A 110 :SIINGINIDED T0287 110 :FSKFD 1c02A 123 :EIKIQ T0287 156 :VMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1c02A 128 :VDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNT T0287 198 :NA 1c02A 166 :NL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1291 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_623298876.pdb -s /var/tmp/to_scwrl_623298876.seq -o /var/tmp/from_scwrl_623298876.pdb > /var/tmp/scwrl_623298876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623298876.pdb Number of alignments=150 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-global-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t04-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 18 :KKEKLIESLQENELLNTDEK 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 44 :IKTMHDFFKQMHTNKGALDKVLRNYM 1c02A 29 :KGLIIQFIDQAQTTFAQMQRQLDGEK T0287 71 :DYRAVI 1c02A 55 :NLTELD T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESET 1c02A 77 :RIAWVCERIQNLG T0287 104 :ENPNFLFSKFDRSILGIFLP 1c02A 90 :RKMQHFFPNKTELVNTLSDK T0287 126 :SKPIMFKMSIR 1c02A 110 :SIINGINIDED T0287 139 :DSQIE 1c02A 123 :EIKIQ T0287 157 :MTDEEVNFYANLKTIEQYNDYVR 1c02A 131 :KDENSIYLILIAKALNQSRLEFK T0287 182 :LMKFDLEKYMK 1c02A 154 :LARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 11 number of extra gaps= 3 total=1302 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_427589838.pdb -s /var/tmp/to_scwrl_427589838.seq -o /var/tmp/from_scwrl_427589838.pdb > /var/tmp/scwrl_427589838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_427589838.pdb Number of alignments=151 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-local-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t04-local-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 T0287 151 :LLKLFVMTDE 1c02A 14 :LNEIISMDDD T0287 163 :NFYANL 1c02A 26 :DFSKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=1304 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t04-local-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t04-local-adpstyle5.a2m # found chain 1c02A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1304 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-global-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t2k-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S25 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 27 :QENELLNTDEKKKIIDQI 1c02A 4 :IPSEIINWTILNEIISMD T0287 45 :KTMHDFFKQMHTNKGALDKVLR 1c02A 30 :GLIIQFIDQAQTTFAQMQRQLD T0287 68 :YMKDYRAVIK 1c02A 52 :GEKNLTELDN T0287 78 :SIG 1c02A 72 :ALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSI T0287 138 :MDSQIELYG 1c02A 112 :INGINIDED T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLA T0287 184 :KFDLEKYMKE 1c02A 156 :RIELSKYYNT T0287 198 :NA 1c02A 166 :NL Number of specific fragments extracted= 9 number of extra gaps= 2 total=1313 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_694431619.pdb -s /var/tmp/to_scwrl_694431619.seq -o /var/tmp/from_scwrl_694431619.pdb > /var/tmp/scwrl_694431619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694431619.pdb Number of alignments=152 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-global-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t2k-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 1 :MSNNMRKLFSMIAD 1c02A 9 :INWTILNEIISMDD T0287 17 :DKKEKLIESL 1c02A 26 :DFSKGLIIQF T0287 34 :TDEKKKIIDQIKTMHD 1c02A 36 :IDQAQTTFAQMQRQLD T0287 57 :NKGALDKVLR 1c02A 52 :GEKNLTELDN T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSI T0287 146 :G 1c02A 120 :D T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLA T0287 184 :KFDLEKYMKE 1c02A 156 :RIELSKYYNT T0287 198 :NA 1c02A 166 :NL Number of specific fragments extracted= 10 number of extra gaps= 2 total=1323 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1784831126.pdb -s /var/tmp/to_scwrl_1784831126.seq -o /var/tmp/from_scwrl_1784831126.pdb > /var/tmp/scwrl_1784831126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1784831126.pdb Number of alignments=153 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-local-adpstyle1.a2m # 1c02A read from 1c02A-T0287-t2k-local-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S25 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)M47 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 T0287 27 :QENELLNTDEKKKIIDQIKT 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 49 :DFFKQM 1c02A 26 :DFSKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=1325 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_917159586.pdb -s /var/tmp/to_scwrl_917159586.seq -o /var/tmp/from_scwrl_917159586.pdb > /var/tmp/scwrl_917159586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_917159586.pdb Number of alignments=154 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c02A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1c02A-T0287-t2k-local-adpstyle5.a2m # 1c02A read from 1c02A-T0287-t2k-local-adpstyle5.a2m # found chain 1c02A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1325 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-global-adpstyle5.a2m # 1c02A read from 1qspA-T0287-fssp-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 T0287 19 :KEKLIESLQENELLNTDEK 1c02A 5 :PSEIINWTILNEIISMDDD T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIG 1c02A 65 :FLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPF 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIINGINID T0287 125 :F 1c02A 120 :D T0287 127 :KPIMFKMSIREMDSQIELYGTNLP 1c02A 137 :YLILIAKALNQSRLEFKLARIELS Number of specific fragments extracted= 6 number of extra gaps= 3 total=1331 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_271711997.pdb -s /var/tmp/to_scwrl_271711997.seq -o /var/tmp/from_scwrl_271711997.pdb > /var/tmp/scwrl_271711997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_271711997.pdb Number of alignments=155 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-local-adpstyle5.a2m # 1c02A read from 1qspA-T0287-fssp-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 26 :LQENELLNTDEK 1c02A 12 :TILNEIISMDDD T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIG 1c02A 65 :FLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIINGINIDE T0287 126 :SKPIMFKMSIREMDSQIELY 1c02A 136 :IYLILIAKALNQSRLEFKLA Number of specific fragments extracted= 5 number of extra gaps= 2 total=1336 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1908371634.pdb -s /var/tmp/to_scwrl_1908371634.seq -o /var/tmp/from_scwrl_1908371634.pdb > /var/tmp/scwrl_1908371634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908371634.pdb Number of alignments=156 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-simplesw-adpstyle1.a2m # 1c02A read from T0287-1c02A-simplesw-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1337 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1327844254.pdb -s /var/tmp/to_scwrl_1327844254.seq -o /var/tmp/from_scwrl_1327844254.pdb > /var/tmp/scwrl_1327844254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1327844254.pdb Number of alignments=157 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-simplesw-adpstyle5.a2m # 1c02A read from T0287-1c02A-simplesw-adpstyle5.a2m # found chain 1c02A in template set T0287 28 :ENELLNTDEKKKIIDQI 1c02A 99 :KTELVNTLSDKSIINGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=1338 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-adpstyle1.a2m # 1c02A read from T0287-1c02A-t04-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QI 1c02A 123 :EI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1346 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2067232582.pdb -s /var/tmp/to_scwrl_2067232582.seq -o /var/tmp/from_scwrl_2067232582.pdb > /var/tmp/scwrl_2067232582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067232582.pdb Number of alignments=158 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NN 1c02A 4 :IP T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 42 :DQIKTMHDFFKQMHTNKGALDKV 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNL T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREM 1c02A 113 :NGINIDED T0287 141 :QIEL 1c02A 123 :EIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1356 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1005237892.pdb -s /var/tmp/to_scwrl_1005237892.seq -o /var/tmp/from_scwrl_1005237892.pdb > /var/tmp/scwrl_1005237892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005237892.pdb Number of alignments=159 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1366 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1140330874.pdb -s /var/tmp/to_scwrl_1140330874.seq -o /var/tmp/from_scwrl_1140330874.pdb > /var/tmp/scwrl_1140330874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140330874.pdb Number of alignments=160 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYAN 1c02A 132 :DENSIYLIL T0287 171 :IEQYNDYVR 1c02A 141 :IAKALNQSR T0287 180 :DLLMKFDLEKYMK 1c02A 152 :FKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 13 number of extra gaps= 3 total=1379 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1021166697.pdb -s /var/tmp/to_scwrl_1021166697.seq -o /var/tmp/from_scwrl_1021166697.pdb > /var/tmp/scwrl_1021166697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1021166697.pdb Number of alignments=161 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-adpstyle1.a2m # 1c02A read from T0287-1c02A-t04-local-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1380 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_900275141.pdb -s /var/tmp/to_scwrl_900275141.seq -o /var/tmp/from_scwrl_900275141.pdb > /var/tmp/scwrl_900275141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900275141.pdb Number of alignments=162 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 80 :G 1c02A 74 :G T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=1382 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYA 1c02A 131 :KDENSIYL Number of specific fragments extracted= 9 number of extra gaps= 3 total=1391 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1153804176.pdb -s /var/tmp/to_scwrl_1153804176.seq -o /var/tmp/from_scwrl_1153804176.pdb > /var/tmp/scwrl_1153804176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153804176.pdb Number of alignments=163 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 4 :NMRKLFSMIAD 1c02A 13 :ILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYANL 1c02A 132 :DENSIYLILI T0287 169 :KTIEQYN 1c02A 143 :KALNQSR T0287 178 :VRDLLMKFDLEKYM 1c02A 150 :LEFKLARIELSKYY Number of specific fragments extracted= 12 number of extra gaps= 3 total=1403 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_606145574.pdb -s /var/tmp/to_scwrl_606145574.seq -o /var/tmp/from_scwrl_606145574.pdb > /var/tmp/scwrl_606145574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_606145574.pdb Number of alignments=164 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-adpstyle1.a2m # 1c02A read from T0287-1c02A-t06-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QI 1c02A 123 :EI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1411 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_183274443.pdb -s /var/tmp/to_scwrl_183274443.seq -o /var/tmp/from_scwrl_183274443.pdb > /var/tmp/scwrl_183274443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_183274443.pdb Number of alignments=165 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NN 1c02A 4 :IP T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 42 :DQIKTMHDFFKQMHTNKGALDKV 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNL T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREM 1c02A 113 :NGINIDED T0287 141 :QIEL 1c02A 123 :EIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1421 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1542572619.pdb -s /var/tmp/to_scwrl_1542572619.seq -o /var/tmp/from_scwrl_1542572619.pdb > /var/tmp/scwrl_1542572619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1542572619.pdb Number of alignments=166 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1431 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_728407089.pdb -s /var/tmp/to_scwrl_728407089.seq -o /var/tmp/from_scwrl_728407089.pdb > /var/tmp/scwrl_728407089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_728407089.pdb Number of alignments=167 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYAN 1c02A 132 :DENSIYLIL T0287 171 :IEQYNDYVR 1c02A 141 :IAKALNQSR T0287 180 :DLLMKFDLEKYMK 1c02A 152 :FKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 13 number of extra gaps= 3 total=1444 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_896854822.pdb -s /var/tmp/to_scwrl_896854822.seq -o /var/tmp/from_scwrl_896854822.pdb > /var/tmp/scwrl_896854822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_896854822.pdb Number of alignments=168 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-adpstyle1.a2m # 1c02A read from T0287-1c02A-t06-local-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1445 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1252094476.pdb -s /var/tmp/to_scwrl_1252094476.seq -o /var/tmp/from_scwrl_1252094476.pdb > /var/tmp/scwrl_1252094476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1252094476.pdb Number of alignments=169 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 80 :G 1c02A 74 :G T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=1447 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIG 1c02A 58 :ELDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYA 1c02A 131 :KDENSIYL Number of specific fragments extracted= 9 number of extra gaps= 3 total=1456 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_91976812.pdb -s /var/tmp/to_scwrl_91976812.seq -o /var/tmp/from_scwrl_91976812.pdb > /var/tmp/scwrl_91976812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_91976812.pdb Number of alignments=170 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 4 :NMRKLFSMIAD 1c02A 13 :ILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYANL 1c02A 132 :DENSIYLILI T0287 169 :KTIEQYN 1c02A 143 :KALNQSR T0287 178 :VRDLLMKFDLEKYM 1c02A 150 :LEFKLARIELSKYY Number of specific fragments extracted= 12 number of extra gaps= 3 total=1468 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1946214368.pdb -s /var/tmp/to_scwrl_1946214368.seq -o /var/tmp/from_scwrl_1946214368.pdb > /var/tmp/scwrl_1946214368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946214368.pdb Number of alignments=171 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-adpstyle1.a2m # 1c02A read from T0287-1c02A-t2k-global-adpstyle1.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIG 1c02A 71 :AALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QI 1c02A 123 :EI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 3 total=1476 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1251275178.pdb -s /var/tmp/to_scwrl_1251275178.seq -o /var/tmp/from_scwrl_1251275178.pdb > /var/tmp/scwrl_1251275178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1251275178.pdb Number of alignments=172 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-global-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NN 1c02A 4 :IP T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 42 :DQIKTMHDFFKQMHTNKGALDKV 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNL T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREM 1c02A 113 :NGINIDED T0287 141 :QIEL 1c02A 123 :EIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1486 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1248624252.pdb -s /var/tmp/to_scwrl_1248624252.seq -o /var/tmp/from_scwrl_1248624252.pdb > /var/tmp/scwrl_1248624252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1248624252.pdb Number of alignments=173 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 3 total=1496 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1449507913.pdb -s /var/tmp/to_scwrl_1449507913.seq -o /var/tmp/from_scwrl_1449507913.pdb > /var/tmp/scwrl_1449507913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1449507913.pdb Number of alignments=174 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)T3 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 3 :NNMRKLFSMIAD 1c02A 12 :TILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYAN 1c02A 132 :DENSIYLIL T0287 171 :IEQYNDYVR 1c02A 141 :IAKALNQSR T0287 180 :DLLMKFDLEKYMK 1c02A 152 :FKLARIELSKYYN T0287 197 :QNA 1c02A 165 :TNL Number of specific fragments extracted= 13 number of extra gaps= 3 total=1509 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1516669581.pdb -s /var/tmp/to_scwrl_1516669581.seq -o /var/tmp/from_scwrl_1516669581.pdb > /var/tmp/scwrl_1516669581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1516669581.pdb Number of alignments=175 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-adpstyle1.a2m # 1c02A read from T0287-1c02A-t2k-local-adpstyle1.a2m # found chain 1c02A in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1c02A 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1510 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2052231120.pdb -s /var/tmp/to_scwrl_2052231120.seq -o /var/tmp/from_scwrl_2052231120.pdb > /var/tmp/scwrl_2052231120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2052231120.pdb Number of alignments=176 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-local-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 T0287 80 :G 1c02A 74 :G T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 2 number of extra gaps= 1 total=1512 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 5 :MRKLFSMIAD 1c02A 14 :LNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVY 1c02A 77 :RIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1c02A 83 :ERIQNLGRKMQHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREM 1c02A 105 :TLSDKSIINGINIDED T0287 141 :QIELYGTN 1c02A 123 :EIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1c02A 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN Number of specific fragments extracted= 9 number of extra gaps= 3 total=1521 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1834623120.pdb -s /var/tmp/to_scwrl_1834623120.seq -o /var/tmp/from_scwrl_1834623120.pdb > /var/tmp/scwrl_1834623120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1834623120.pdb Number of alignments=177 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1c02A read from T0287-1c02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1c02A in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 4 :NMRKLFSMIAD 1c02A 13 :ILNEIISMDDD T0287 17 :DKKEKLIE 1c02A 26 :DFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1c02A 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRL 1c02A 77 :RIAWVCER T0287 99 :LHAIAENPNFLFSKF 1c02A 85 :IQNLGRKMQHFFPNK T0287 114 :DRSILG 1c02A 108 :DKSIIN T0287 132 :KMSIREM 1c02A 114 :GINIDED T0287 141 :QIELYGTNL 1c02A 123 :EIKIQVDDK T0287 159 :DEEVNFYANL 1c02A 132 :DENSIYLILI T0287 169 :KTIEQYN 1c02A 143 :KALNQSR T0287 178 :VRDLLMKFDLEKYM 1c02A 150 :LEFKLARIELSKYY Number of specific fragments extracted= 12 number of extra gaps= 3 total=1533 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_719626121.pdb -s /var/tmp/to_scwrl_719626121.seq -o /var/tmp/from_scwrl_719626121.pdb > /var/tmp/scwrl_719626121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719626121.pdb Number of alignments=178 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1c02A-t04-muscle.a2m.gz # 1c02A read from T0287-1c02A-t04-muscle.a2m.gz # found chain 1c02A in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 T0287 9 :FSMIADSKDKKEKLIESLQE 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1c02A 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLES 1c02A 77 :RIAWVCERIQN T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYA 1c02A 88 :LGRKMQHFFPNKTELVNTLSDKSIINGINIDED T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFK Number of specific fragments extracted= 6 number of extra gaps= 3 total=1539 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1873448104.pdb -s /var/tmp/to_scwrl_1873448104.seq -o /var/tmp/from_scwrl_1873448104.pdb > /var/tmp/scwrl_1873448104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1873448104.pdb Number of alignments=179 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1c02A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1c02A-t2k-muscle.a2m.gz # 1c02A read from T0287-1c02A-t2k-muscle.a2m.gz # found chain 1c02A in template set Warning: unaligning (T0287)M5 because first residue in template chain is (1c02A)S2 Warning: unaligning (T0287)R6 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)T3 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)S25 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)S25 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)Q76 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)Q76 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1c02A)E122 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1c02A)E122 Warning: unaligning (T0287)Q173 because last residue in template chain is (1c02A)L167 T0287 7 :KLFSMIADSKDKKEKLIESL 1c02A 4 :IPSEIINWTILNEIISMDDD T0287 29 :NELLNT 1c02A 26 :DFSKGL T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDK 1c02A 32 :IIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIG 1c02A 59 :LDNLGHFLKGSSAALG T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFS 1c02A 77 :RIAWVCERIQNLGRKMQHFFPNKTELVNTLSDKSIINGINIDED T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1c02A 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTN Number of specific fragments extracted= 6 number of extra gaps= 3 total=1545 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1955549096.pdb -s /var/tmp/to_scwrl_1955549096.seq -o /var/tmp/from_scwrl_1955549096.pdb > /var/tmp/scwrl_1955549096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1955549096.pdb Number of alignments=180 # command:# Prefix for input files set to 1dc1A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-fssp-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-fssp-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 27 :QENELLNTDEKKKIIDQIKT 1dc1A 81 :KAKKFLTEDDKKESINNLIE T0287 47 :M 1dc1A 102 :F T0287 48 :HDFFKQMHTNKGALDKVLRNYMKDY 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGAL T0287 73 :RAVIKSIG 1dc1A 196 :RTLMYNIT T0287 83 :K 1dc1A 206 :L T0287 102 :IAENPNFLFSKFD 1dc1A 207 :VKKNVDICLFNCE T0287 116 :S 1dc1A 231 :Q T0287 118 :LGIFLPFFSKPIMFKMSIRE 1dc1A 232 :PEKYLLLGELKGGIDPAGAD T0287 138 :MDSQIELYGTNLPLLK 1dc1A 253 :HWKTANTALTRIRNKF T0287 154 :LFVM 1dc1A 277 :TIFI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLM 1dc1A 297 :QSGSLTNSANLTKTEQVGSLCRWIIN Number of specific fragments extracted= 11 number of extra gaps= 1 total=1556 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1342924997.pdb -s /var/tmp/to_scwrl_1342924997.seq -o /var/tmp/from_scwrl_1342924997.pdb > /var/tmp/scwrl_1342924997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1342924997.pdb Number of alignments=181 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-fssp-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-fssp-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 41 :IDQIKTMHDFFKQMHT 1dc1A 14 :VDDLKTTYEEYRAGFI T0287 58 :KGALDKVLRN 1dc1A 30 :AFALEKNKRS T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 1dc1A 42 :YIERARALKVAASVAKTPKDLLYLEDIQDALLYAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1559 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_153554295.pdb -s /var/tmp/to_scwrl_153554295.seq -o /var/tmp/from_scwrl_153554295.pdb > /var/tmp/scwrl_153554295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_153554295.pdb Number of alignments=182 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-global-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t04-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dc1A)K5 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1dc1A 64 :YLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIEN T0287 106 :PNFLFSKFDRSILGI 1dc1A 135 :GALAQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANL 1dc1A 232 :PEKYLLL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1dc1A 266 :NKFSEKGLSPKTIFIGAAIEHSMAEEIWDQL Number of specific fragments extracted= 11 number of extra gaps= 2 total=1570 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_502497069.pdb -s /var/tmp/to_scwrl_502497069.seq -o /var/tmp/from_scwrl_502497069.pdb > /var/tmp/scwrl_502497069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_502497069.pdb Number of alignments=183 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t04-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 7 :FE T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQENELLNT 1dc1A 41 :PYIERARALKVAAS T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1dc1A 55 :VAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKK T0287 75 :VI 1dc1A 94 :SI T0287 77 :KSIGVDKF 1dc1A 107 :GEEFIDEL T0287 87 :VYRLLESETMELLHAIAENPNF 1dc1A 115 :IFRYLLFQGDSLGGTMRNIAGA T0287 109 :LFSKFDRSILGI 1dc1A 138 :AQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 145 :YGTN 1dc1A 200 :YNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANLKTIEQ 1dc1A 232 :PEKYLLLGELKG T0287 174 :YNDYV 1dc1A 257 :ANTAL T0287 179 :R 1dc1A 265 :R T0287 180 :DLLMKFDLEKYMKEKG 1dc1A 277 :TIFIGAAIEHSMAEEI T0287 196 :VQNA 1dc1A 320 :IINI Number of specific fragments extracted= 19 number of extra gaps= 2 total=1589 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_980272477.pdb -s /var/tmp/to_scwrl_980272477.seq -o /var/tmp/from_scwrl_980272477.pdb > /var/tmp/scwrl_980272477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_980272477.pdb Number of alignments=184 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-local-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t04-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1dc1A 17 :LKTTYEEYRAGFIAFALEKNKRSTPYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1590 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1070713882.pdb -s /var/tmp/to_scwrl_1070713882.seq -o /var/tmp/from_scwrl_1070713882.pdb > /var/tmp/scwrl_1070713882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1070713882.pdb Number of alignments=185 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t04-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t04-local-adpstyle5.a2m # found chain 1dc1A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1590 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-global-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t06-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dc1A)K5 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1dc1A 64 :YLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIEN T0287 106 :PNFLFSKFDRSILGI 1dc1A 135 :GALAQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANL 1dc1A 232 :PEKYLLL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1dc1A 266 :NKFSEKGLSPKTIFIGAAIEHSMAEEIWDQL Number of specific fragments extracted= 11 number of extra gaps= 2 total=1601 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_774209066.pdb -s /var/tmp/to_scwrl_774209066.seq -o /var/tmp/from_scwrl_774209066.pdb > /var/tmp/scwrl_774209066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_774209066.pdb Number of alignments=186 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t06-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 7 :FE T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQENELLNT 1dc1A 41 :PYIERARALKVAAS T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1dc1A 55 :VAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKK T0287 75 :VI 1dc1A 94 :SI T0287 77 :KSIGVDKF 1dc1A 107 :GEEFIDEL T0287 87 :VYRLLESETMELLHAIAENPNF 1dc1A 115 :IFRYLLFQGDSLGGTMRNIAGA T0287 109 :LFSKFDRSILGI 1dc1A 138 :AQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 145 :YGTN 1dc1A 200 :YNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANLKTIEQ 1dc1A 232 :PEKYLLLGELKG T0287 174 :YNDYV 1dc1A 257 :ANTAL T0287 179 :R 1dc1A 265 :R T0287 180 :DLLMKFDLEKYMKEKG 1dc1A 277 :TIFIGAAIEHSMAEEI T0287 196 :VQNA 1dc1A 320 :IINI Number of specific fragments extracted= 19 number of extra gaps= 2 total=1620 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_741160464.pdb -s /var/tmp/to_scwrl_741160464.seq -o /var/tmp/from_scwrl_741160464.pdb > /var/tmp/scwrl_741160464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_741160464.pdb Number of alignments=187 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-local-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t06-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1dc1A 17 :LKTTYEEYRAGFIAFALEKNKRSTPYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1621 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_251074489.pdb -s /var/tmp/to_scwrl_251074489.seq -o /var/tmp/from_scwrl_251074489.pdb > /var/tmp/scwrl_251074489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_251074489.pdb Number of alignments=188 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t06-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t06-local-adpstyle5.a2m # found chain 1dc1A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1621 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-global-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t2k-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dc1A)K5 Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 68 :YMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAEN 1dc1A 64 :YLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIEN T0287 106 :PNFLFSKFDRSILGI 1dc1A 135 :GALAQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANL 1dc1A 232 :PEKYLLL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1dc1A 266 :NKFSEKGLSPKTIFIGAAIEHSMAEEIWDQL Number of specific fragments extracted= 11 number of extra gaps= 2 total=1632 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_693958002.pdb -s /var/tmp/to_scwrl_693958002.seq -o /var/tmp/from_scwrl_693958002.pdb > /var/tmp/scwrl_693958002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_693958002.pdb Number of alignments=189 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-global-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t2k-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 7 :FE T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQENELLNT 1dc1A 41 :PYIERARALKVAAS T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1dc1A 55 :VAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKK T0287 75 :VI 1dc1A 94 :SI T0287 77 :KSIGVDKF 1dc1A 107 :GEEFIDEL T0287 87 :VYRLLESETMELLHAIAENPNF 1dc1A 115 :IFRYLLFQGDSLGGTMRNIAGA T0287 109 :LFSKFDRSILGI 1dc1A 138 :AQQKLTRAIISA T0287 121 :FLPF 1dc1A 159 :WLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 145 :YGTN 1dc1A 200 :YNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 160 :E 1dc1A 231 :Q T0287 162 :VNFYANLKTIEQ 1dc1A 232 :PEKYLLLGELKG T0287 174 :YNDYV 1dc1A 257 :ANTAL T0287 179 :R 1dc1A 265 :R T0287 180 :DLLMKFDLEKYMKEKG 1dc1A 277 :TIFIGAAIEHSMAEEI T0287 196 :VQNA 1dc1A 320 :IINI Number of specific fragments extracted= 19 number of extra gaps= 2 total=1651 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1746398355.pdb -s /var/tmp/to_scwrl_1746398355.seq -o /var/tmp/from_scwrl_1746398355.pdb > /var/tmp/scwrl_1746398355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1746398355.pdb Number of alignments=190 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-local-adpstyle1.a2m # 1dc1A read from 1dc1A-T0287-t2k-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1dc1A 17 :LKTTYEEYRAGFIAFALEKNKRSTPYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1652 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1391405364.pdb -s /var/tmp/to_scwrl_1391405364.seq -o /var/tmp/from_scwrl_1391405364.pdb > /var/tmp/scwrl_1391405364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1391405364.pdb Number of alignments=191 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dc1A-T0287-t2k-local-adpstyle5.a2m # 1dc1A read from 1dc1A-T0287-t2k-local-adpstyle5.a2m # found chain 1dc1A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1652 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-simplesw-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-simplesw-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1653 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1715124698.pdb -s /var/tmp/to_scwrl_1715124698.seq -o /var/tmp/from_scwrl_1715124698.pdb > /var/tmp/scwrl_1715124698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1715124698.pdb Number of alignments=192 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-simplesw-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-simplesw-adpstyle5.a2m # found chain 1dc1A in training set T0287 22 :LIESLQENEL 1dc1A 94 :SINNLIENFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1654 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t04-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIEL 1dc1A 70 :DALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDI T0287 147 :TNLPLLKLFV 1dc1A 153 :ANIPYKWLDS T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 1dc1A 165 :KKYTNWMDKPEDDYELETFAKGISWTINGKHRTLMYNIT Number of specific fragments extracted= 4 number of extra gaps= 2 total=1658 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_499189850.pdb -s /var/tmp/to_scwrl_499189850.seq -o /var/tmp/from_scwrl_499189850.pdb > /var/tmp/scwrl_499189850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_499189850.pdb Number of alignments=193 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)V162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 9 :NH T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQ 1dc1A 41 :PYIERAR T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1dc1A 59 :PKDLLYLEDIQDALLYASGISDKAKKFLTEDDK T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETM 1dc1A 92 :KESINNLIENFLEPAGEEFIDELIFRYLLFQGDSL T0287 97 :ELLHAIAEN 1dc1A 132 :NIAGALAQQ T0287 106 :PNFLFSKFDR 1dc1A 143 :TRAIISALDI T0287 116 :SILGIFLPF 1dc1A 154 :NIPYKWLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLKL 1dc1A 206 :LVKK T0287 155 :FVMTDEE 1dc1A 213 :ICLFNCE T0287 172 :E 1dc1A 231 :Q T0287 174 :YNDYVRDLLMKFDLEKYMK 1dc1A 232 :PEKYLLLGELKGGIDPAGA Number of specific fragments extracted= 14 number of extra gaps= 2 total=1672 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_397725894.pdb -s /var/tmp/to_scwrl_397725894.seq -o /var/tmp/from_scwrl_397725894.pdb > /var/tmp/scwrl_397725894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_397725894.pdb Number of alignments=194 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)F155 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKE 1dc1A 22 :EEYRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKI 1dc1A 83 :KKFLTEDDKKES T0287 47 :MHDFFKQMHTNKG 1dc1A 95 :INNLIENFLEPAG T0287 60 :ALDKVLRNYMKDYRA 1dc1A 110 :FIDELIFRYLLFQGD T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1dc1A 125 :SLGGTMRNIAGALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 159 :D 1dc1A 231 :Q T0287 161 :EVNFY 1dc1A 232 :PEKYL T0287 166 :ANLKTIEQYNDYVRDLLMK 1dc1A 245 :IDPAGADEHWKTANTALTR T0287 187 :LEKYMKEKGVQ 1dc1A 264 :IRNKFSEKGLS Number of specific fragments extracted= 14 number of extra gaps= 1 total=1686 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_173786625.pdb -s /var/tmp/to_scwrl_173786625.seq -o /var/tmp/from_scwrl_173786625.pdb > /var/tmp/scwrl_173786625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173786625.pdb Number of alignments=195 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKIIDQI 1dc1A 60 :KDLLYLEDIQDALLYA T0287 45 :KTMHDFFKQMHTN 1dc1A 89 :DDKKESINNLIEN T0287 58 :KGALDKVLRNYMKDYRAVIKS 1dc1A 108 :EEFIDELIFRYLLFQGDSLGG T0287 83 :KFKKVY 1dc1A 129 :TMRNIA T0287 89 :RLLESETMELLHAIAENPNFLF 1dc1A 136 :ALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQN 1dc1A 268 :FSEKGLSP Number of specific fragments extracted= 13 number of extra gaps= 1 total=1699 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_682464293.pdb -s /var/tmp/to_scwrl_682464293.seq -o /var/tmp/from_scwrl_682464293.pdb > /var/tmp/scwrl_682464293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_682464293.pdb Number of alignments=196 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t04-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1700 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1940298513.pdb -s /var/tmp/to_scwrl_1940298513.seq -o /var/tmp/from_scwrl_1940298513.pdb > /var/tmp/scwrl_1940298513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1940298513.pdb Number of alignments=197 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 19 :KEKLIESLQENELL 1dc1A 91 :KKESINNLIENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1701 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0287 14 :DSKDKKEKLIESLQENELLNTDE 1dc1A 86 :LTEDDKKESINNLIENFLEPAGE T0287 39 :KIIDQIKTMHDFFKQ 1dc1A 109 :EFIDELIFRYLLFQG T0287 59 :GALDKVLRNYMK 1dc1A 124 :DSLGGTMRNIAG T0287 75 :VI 1dc1A 136 :AL T0287 91 :LESETMELLHAIAENPNFL 1dc1A 138 :AQQKLTRAIISALDIANIP T0287 119 :GIFLPF 1dc1A 157 :YKWLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 151 :LLKLFVMTDE 1dc1A 183 :FAKGISWTIN Number of specific fragments extracted= 8 number of extra gaps= 1 total=1709 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_902193714.pdb -s /var/tmp/to_scwrl_902193714.seq -o /var/tmp/from_scwrl_902193714.pdb > /var/tmp/scwrl_902193714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902193714.pdb Number of alignments=198 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE T0287 40 :IIDQIKTMHDFFKQ 1dc1A 110 :FIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKVYRL 1dc1A 140 :QKLTRA T0287 95 :TMELLHAI 1dc1A 146 :IISALDIA T0287 103 :A 1dc1A 162 :S T0287 106 :PNFL 1dc1A 165 :KKYT T0287 110 :FSKFDRSILGIFLPFFSKP 1dc1A 177 :DYELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQ 1dc1A 268 :FSEKGLS Number of specific fragments extracted= 13 number of extra gaps= 2 total=1722 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1579319114.pdb -s /var/tmp/to_scwrl_1579319114.seq -o /var/tmp/from_scwrl_1579319114.pdb > /var/tmp/scwrl_1579319114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1579319114.pdb Number of alignments=199 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t06-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIEL 1dc1A 70 :DALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDI T0287 147 :TNLPLLKLFV 1dc1A 153 :ANIPYKWLDS T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 1dc1A 165 :KKYTNWMDKPEDDYELETFAKGISWTINGKHRTLMYNIT Number of specific fragments extracted= 4 number of extra gaps= 2 total=1726 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1044909343.pdb -s /var/tmp/to_scwrl_1044909343.seq -o /var/tmp/from_scwrl_1044909343.pdb > /var/tmp/scwrl_1044909343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1044909343.pdb Number of alignments=200 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)V162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 9 :NH T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQ 1dc1A 41 :PYIERAR T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1dc1A 59 :PKDLLYLEDIQDALLYASGISDKAKKFLTEDDK T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETM 1dc1A 92 :KESINNLIENFLEPAGEEFIDELIFRYLLFQGDSL T0287 97 :ELLHAIAEN 1dc1A 132 :NIAGALAQQ T0287 106 :PNFLFSKFDR 1dc1A 143 :TRAIISALDI T0287 116 :SILGIFLPF 1dc1A 154 :NIPYKWLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLKL 1dc1A 206 :LVKK T0287 155 :FVMTDEE 1dc1A 213 :ICLFNCE T0287 172 :E 1dc1A 231 :Q T0287 174 :YNDYVRDLLMKFDLEKYMK 1dc1A 232 :PEKYLLLGELKGGIDPAGA Number of specific fragments extracted= 14 number of extra gaps= 2 total=1740 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_994170527.pdb -s /var/tmp/to_scwrl_994170527.seq -o /var/tmp/from_scwrl_994170527.pdb > /var/tmp/scwrl_994170527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994170527.pdb Number of alignments=201 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)F155 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKE 1dc1A 22 :EEYRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKI 1dc1A 83 :KKFLTEDDKKES T0287 47 :MHDFFKQMHTNKG 1dc1A 95 :INNLIENFLEPAG T0287 60 :ALDKVLRNYMKDYRA 1dc1A 110 :FIDELIFRYLLFQGD T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1dc1A 125 :SLGGTMRNIAGALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 159 :D 1dc1A 231 :Q T0287 161 :EVNFY 1dc1A 232 :PEKYL T0287 166 :ANLKTIEQYNDYVRDLLMK 1dc1A 245 :IDPAGADEHWKTANTALTR T0287 187 :LEKYMKEKGVQ 1dc1A 264 :IRNKFSEKGLS Number of specific fragments extracted= 14 number of extra gaps= 1 total=1754 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1378049835.pdb -s /var/tmp/to_scwrl_1378049835.seq -o /var/tmp/from_scwrl_1378049835.pdb > /var/tmp/scwrl_1378049835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1378049835.pdb Number of alignments=202 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKIIDQI 1dc1A 60 :KDLLYLEDIQDALLYA T0287 45 :KTMHDFFKQMHTN 1dc1A 89 :DDKKESINNLIEN T0287 58 :KGALDKVLRNYMKDYRAVIKS 1dc1A 108 :EEFIDELIFRYLLFQGDSLGG T0287 83 :KFKKVY 1dc1A 129 :TMRNIA T0287 89 :RLLESETMELLHAIAENPNFLF 1dc1A 136 :ALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQN 1dc1A 268 :FSEKGLSP Number of specific fragments extracted= 13 number of extra gaps= 1 total=1767 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_148700874.pdb -s /var/tmp/to_scwrl_148700874.seq -o /var/tmp/from_scwrl_148700874.pdb > /var/tmp/scwrl_148700874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_148700874.pdb Number of alignments=203 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t06-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1768 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_95311132.pdb -s /var/tmp/to_scwrl_95311132.seq -o /var/tmp/from_scwrl_95311132.pdb > /var/tmp/scwrl_95311132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_95311132.pdb Number of alignments=204 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 19 :KEKLIESLQENELL 1dc1A 91 :KKESINNLIENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1769 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0287 14 :DSKDKKEKLIESLQENELLNTDE 1dc1A 86 :LTEDDKKESINNLIENFLEPAGE T0287 39 :KIIDQIKTMHDFFKQ 1dc1A 109 :EFIDELIFRYLLFQG T0287 59 :GALDKVLRNYMK 1dc1A 124 :DSLGGTMRNIAG T0287 75 :VI 1dc1A 136 :AL T0287 91 :LESETMELLHAIAENPNFL 1dc1A 138 :AQQKLTRAIISALDIANIP T0287 119 :GIFLPF 1dc1A 157 :YKWLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 151 :LLKLFVMTDE 1dc1A 183 :FAKGISWTIN Number of specific fragments extracted= 8 number of extra gaps= 1 total=1777 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_680074103.pdb -s /var/tmp/to_scwrl_680074103.seq -o /var/tmp/from_scwrl_680074103.pdb > /var/tmp/scwrl_680074103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_680074103.pdb Number of alignments=205 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE T0287 40 :IIDQIKTMHDFFKQ 1dc1A 110 :FIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKVYRL 1dc1A 140 :QKLTRA T0287 95 :TMELLHAI 1dc1A 146 :IISALDIA T0287 103 :A 1dc1A 162 :S T0287 106 :PNFL 1dc1A 165 :KKYT T0287 110 :FSKFDRSILGIFLPFFSKP 1dc1A 177 :DYELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQ 1dc1A 268 :FSEKGLS Number of specific fragments extracted= 13 number of extra gaps= 2 total=1790 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1665370455.pdb -s /var/tmp/to_scwrl_1665370455.seq -o /var/tmp/from_scwrl_1665370455.pdb > /var/tmp/scwrl_1665370455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1665370455.pdb Number of alignments=206 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t2k-global-adpstyle1.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1dc1A 7 :FENHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTPYIERARALKVAASVAKTPKDLL T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIEL 1dc1A 70 :DALLYASGISDKAKKFLTEDDKKESINNLIENFLEPAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALDI T0287 147 :TNLPLLKLFV 1dc1A 153 :ANIPYKWLDS T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 1dc1A 165 :KKYTNWMDKPEDDYELETFAKGISWTINGKHRTLMYNIT Number of specific fragments extracted= 4 number of extra gaps= 2 total=1794 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_58606.pdb -s /var/tmp/to_scwrl_58606.seq -o /var/tmp/from_scwrl_58606.pdb > /var/tmp/scwrl_58606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58606.pdb Number of alignments=207 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-global-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)V162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NN 1dc1A 9 :NH T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQ 1dc1A 41 :PYIERAR T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1dc1A 59 :PKDLLYLEDIQDALLYASGISDKAKKFLTEDDK T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETM 1dc1A 92 :KESINNLIENFLEPAGEEFIDELIFRYLLFQGDSL T0287 97 :ELLHAIAEN 1dc1A 132 :NIAGALAQQ T0287 106 :PNFLFSKFDR 1dc1A 143 :TRAIISALDI T0287 116 :SILGIFLPF 1dc1A 154 :NIPYKWLDS T0287 127 :KPIMFKMSIREMDSQIE 1dc1A 165 :KKYTNWMDKPEDDYELE T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLKL 1dc1A 206 :LVKK T0287 155 :FVMTDEE 1dc1A 213 :ICLFNCE T0287 172 :E 1dc1A 231 :Q T0287 174 :YNDYVRDLLMKFDLEKYMK 1dc1A 232 :PEKYLLLGELKGGIDPAGA Number of specific fragments extracted= 14 number of extra gaps= 2 total=1808 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_367213576.pdb -s /var/tmp/to_scwrl_367213576.seq -o /var/tmp/from_scwrl_367213576.pdb > /var/tmp/scwrl_367213576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367213576.pdb Number of alignments=208 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)F155 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKII 1dc1A 60 :KDLLYLEDIQDAL T0287 42 :DQIKTMHDFFKQMHTNKG 1dc1A 90 :DKKESINNLIENFLEPAG T0287 60 :ALDKVLRNYMKDYR 1dc1A 110 :FIDELIFRYLLFQG T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1dc1A 124 :DSLGGTMRNIAGALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 159 :D 1dc1A 231 :Q T0287 161 :EVNF 1dc1A 232 :PEKY T0287 166 :ANLKTIEQYNDYVRDLLMK 1dc1A 245 :IDPAGADEHWKTANTALTR T0287 187 :LEKYMKEKGVQ 1dc1A 264 :IRNKFSEKGLS Number of specific fragments extracted= 14 number of extra gaps= 1 total=1822 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_237512930.pdb -s /var/tmp/to_scwrl_237512930.seq -o /var/tmp/from_scwrl_237512930.pdb > /var/tmp/scwrl_237512930.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_237512930.pdb Number of alignments=209 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 5 :MRKLFSMIADSKDKKE 1dc1A 24 :YRAGFIAFALEKNKRS T0287 21 :KLIESLQE 1dc1A 41 :PYIERARA T0287 29 :NELLNTDEKKKIIDQI 1dc1A 60 :KDLLYLEDIQDALLYA T0287 45 :KTMHDFFKQMHTN 1dc1A 89 :DDKKESINNLIEN T0287 58 :KGALDKVLRNYMKDYRAVIKS 1dc1A 108 :EEFIDELIFRYLLFQGDSLGG T0287 83 :KFKKVY 1dc1A 129 :TMRNIA T0287 89 :RLLESETMELLHAIAENPNFLF 1dc1A 136 :ALAQQKLTRAIISALDIANIPY T0287 111 :SKFDRSILGIFLPFFSKP 1dc1A 178 :YELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQN 1dc1A 268 :FSEKGLSP Number of specific fragments extracted= 13 number of extra gaps= 1 total=1835 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1873506710.pdb -s /var/tmp/to_scwrl_1873506710.seq -o /var/tmp/from_scwrl_1873506710.pdb > /var/tmp/scwrl_1873506710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1873506710.pdb Number of alignments=210 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-adpstyle1.a2m # 1dc1A read from T0287-1dc1A-t2k-local-adpstyle1.a2m # found chain 1dc1A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1836 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_175279026.pdb -s /var/tmp/to_scwrl_175279026.seq -o /var/tmp/from_scwrl_175279026.pdb > /var/tmp/scwrl_175279026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175279026.pdb Number of alignments=211 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-local-adpstyle5.a2m # found chain 1dc1A in training set T0287 19 :KEKLIESLQENELL 1dc1A 91 :KKESINNLIENFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1837 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 T0287 14 :DSKDKKEKLIESLQENELLNTDE 1dc1A 86 :LTEDDKKESINNLIENFLEPAGE T0287 39 :KIIDQIKTMHDFFKQ 1dc1A 109 :EFIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKV 1dc1A 140 :QKL T0287 95 :TMELLHAI 1dc1A 143 :TRAIISAL T0287 104 :ENPN 1dc1A 151 :DIAN T0287 117 :ILGIFLPF 1dc1A 155 :IPYKWLDS T0287 127 :KPIMFKMSIREMDSQIEL 1dc1A 165 :KKYTNWMDKPEDDYELET T0287 151 :LLKLFVMTDE 1dc1A 183 :FAKGISWTIN Number of specific fragments extracted= 9 number of extra gaps= 1 total=1846 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1580437927.pdb -s /var/tmp/to_scwrl_1580437927.seq -o /var/tmp/from_scwrl_1580437927.pdb > /var/tmp/scwrl_1580437927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1580437927.pdb Number of alignments=212 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dc1A read from T0287-1dc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dc1A in training set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)D164 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)D164 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0287 15 :SKDKKEKLIESLQENELLNTDEK 1dc1A 87 :TEDDKKESINNLIENFLEPAGEE T0287 40 :IIDQIKTMHDFFKQ 1dc1A 110 :FIDELIFRYLLFQG T0287 59 :GALDKVLRNYMKDYRA 1dc1A 124 :DSLGGTMRNIAGALAQ T0287 85 :KKVYRL 1dc1A 140 :QKLTRA T0287 95 :TMELLHAI 1dc1A 146 :IISALDIA T0287 103 :A 1dc1A 162 :S T0287 106 :PNFL 1dc1A 165 :KKYT T0287 110 :FSKFDRSILGIFLPFFSKP 1dc1A 177 :DYELETFAKGISWTINGKH T0287 129 :IMFKMS 1dc1A 198 :LMYNIT T0287 137 :EMDSQIE 1dc1A 206 :LVKKNVD T0287 144 :LYGTN 1dc1A 215 :LFNCE T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1dc1A 233 :EKYLLLGELKGGIDPAGADEHWKTANTALTRIRNK T0287 191 :MKEKGVQ 1dc1A 268 :FSEKGLS Number of specific fragments extracted= 13 number of extra gaps= 2 total=1859 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2027061006.pdb -s /var/tmp/to_scwrl_2027061006.seq -o /var/tmp/from_scwrl_2027061006.pdb > /var/tmp/scwrl_2027061006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027061006.pdb Number of alignments=213 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dc1A-t04-muscle.a2m.gz # 1dc1A read from T0287-1dc1A-t04-muscle.a2m.gz # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKEK 1dc1A 22 :EEYRAGFIAFALEKNKRST T0287 22 :LIESLQENELLNTDEKKK 1dc1A 42 :YIERARALKVAASVAKTP T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1dc1A 60 :KDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGALAQ T0287 112 :KFDRSILGIFL 1dc1A 141 :KLTRAIISALD T0287 123 :PFFSKP 1dc1A 169 :NWMDKP T0287 129 :IMFKMSIREMDSQIE 1dc1A 178 :YELETFAKGISWTIN T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 161 :EVNFYANLKTI 1dc1A 231 :QPEKYLLLGEL T0287 172 :EQYNDYVRDLLMKFD 1dc1A 255 :KTANTALTRIRNKFS T0287 187 :LEKYMKE 1dc1A 284 :IEHSMAE T0287 194 :KGVQNA 1dc1A 318 :RWIINI Number of specific fragments extracted= 14 number of extra gaps= 2 total=1873 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_677776095.pdb -s /var/tmp/to_scwrl_677776095.seq -o /var/tmp/from_scwrl_677776095.pdb > /var/tmp/scwrl_677776095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_677776095.pdb Number of alignments=214 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dc1A-t06-muscle.a2m.gz # 1dc1A read from T0287-1dc1A-t06-muscle.a2m.gz # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1dc1A 9 :NHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTP T0287 36 :EKKKII 1dc1A 44 :ERARAL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1dc1A 60 :KDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGALAQ T0287 112 :KFDRSILGIFL 1dc1A 141 :KLTRAIISALD T0287 123 :PFFSKP 1dc1A 169 :NWMDKP T0287 129 :IMFKMSIREMDSQIE 1dc1A 178 :YELETFAKGISWTIN T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 161 :EVNFYANLKTI 1dc1A 231 :QPEKYLLLGEL T0287 172 :EQYNDYVRDLLMKFD 1dc1A 255 :KTANTALTRIRNKFS T0287 187 :LEKYMKE 1dc1A 284 :IEHSMAE T0287 194 :KGVQNA 1dc1A 318 :RWIINI Number of specific fragments extracted= 14 number of extra gaps= 2 total=1887 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_413226757.pdb -s /var/tmp/to_scwrl_413226757.seq -o /var/tmp/from_scwrl_413226757.pdb > /var/tmp/scwrl_413226757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_413226757.pdb Number of alignments=215 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dc1A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dc1A-t2k-muscle.a2m.gz # 1dc1A read from T0287-1dc1A-t2k-muscle.a2m.gz # found chain 1dc1A in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)P6 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)P6 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1dc1A)S205 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1dc1A)S205 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dc1A)Q230 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1dc1A 9 :NHLKSVDDLKTTYEEYRAGFIAFALEKNKRSTP T0287 36 :EKKKII 1dc1A 44 :ERARAL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1dc1A 60 :KDLLYLEDIQDALLYASGISDKAKKFLTEDDKKESINNLIENF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 1dc1A 113 :ELIFRYLLFQGDSLGGTMRNIAGALAQ T0287 112 :KFDRSILGIFL 1dc1A 141 :KLTRAIISALD T0287 123 :PFFSKP 1dc1A 169 :NWMDKP T0287 129 :IMFKMSIREMDSQIE 1dc1A 178 :YELETFAKGISWTIN T0287 144 :LYGTN 1dc1A 199 :MYNIT T0287 151 :LLK 1dc1A 206 :LVK T0287 154 :LFVMT 1dc1A 215 :LFNCE T0287 161 :EVNFYANLKTI 1dc1A 231 :QPEKYLLLGEL T0287 172 :EQYNDYVRDLLMKFD 1dc1A 255 :KTANTALTRIRNKFS T0287 187 :LEKYMKE 1dc1A 284 :IEHSMAE T0287 194 :KGVQNA 1dc1A 318 :RWIINI Number of specific fragments extracted= 14 number of extra gaps= 2 total=1901 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_950291241.pdb -s /var/tmp/to_scwrl_950291241.seq -o /var/tmp/from_scwrl_950291241.pdb > /var/tmp/scwrl_950291241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_950291241.pdb Number of alignments=216 # command:# Prefix for input files set to 1dh3A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a02J-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a02J-T0287-fssp-global-adpstyle5.a2m # 1dh3A read from 1a02J-T0287-fssp-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)L61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)D62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 11 :M 1dh3A 288 :V T0287 14 :DSKDKKEKLIESLQENE 1dh3A 291 :MKNREAARESRRKKKEY T0287 33 :NTDEK 1dh3A 310 :SLENR T0287 40 :IIDQIKTMHDF 1dh3A 317 :VLENQNKTLIE T0287 54 :MHT 1dh3A 331 :ALK T0287 59 :GA 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1907 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a02J-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1a02J-T0287-fssp-local-adpstyle5.a2m # 1dh3A read from 1a02J-T0287-fssp-local-adpstyle5.a2m # found chain 1dh3A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1907 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-global-adpstyle1.a2m # 1dh3A read from 1dh3A-T0287-t2k-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 286 :REV T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1913 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-global-adpstyle5.a2m # 1dh3A read from 1dh3A-T0287-t2k-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 2 :SN 1dh3A 287 :EV T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 7 number of extra gaps= 6 total=1920 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-local-adpstyle1.a2m # 1dh3A read from 1dh3A-T0287-t2k-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1925 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dh3A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dh3A-T0287-t2k-local-adpstyle5.a2m # 1dh3A read from 1dh3A-T0287-t2k-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1930 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-simplesw-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-simplesw-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1935 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-simplesw-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-simplesw-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=1940 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t04-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1946 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1952 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1958 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 15 :SKD 1dh3A 286 :REV T0287 20 :EKLIESLQENE 1dh3A 291 :MKNREAARESR T0287 45 :KTMHDF 1dh3A 302 :RKKKEY T0287 53 :QMHTN 1dh3A 310 :SLENR T0287 60 :AL 1dh3A 317 :VL T0287 92 :ESETMELLH 1dh3A 319 :ENQNKTLIE T0287 191 :MKE 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 9 number of extra gaps= 6 total=1967 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1451985160.pdb -s /var/tmp/to_scwrl_1451985160.seq -o /var/tmp/from_scwrl_1451985160.pdb > /var/tmp/scwrl_1451985160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451985160.pdb Number of alignments=217 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t04-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=1972 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=1977 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 5 total=1981 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 T0287 7 :KLFSMIADSKDKKEKL 1dh3A 292 :KNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 3 total=1985 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t06-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1991 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=1997 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2003 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 15 :SKD 1dh3A 286 :REV T0287 20 :EKLIESLQENE 1dh3A 291 :MKNREAARESR T0287 45 :KTMHDF 1dh3A 302 :RKKKEY T0287 53 :QMHTN 1dh3A 310 :SLENR T0287 60 :AL 1dh3A 317 :VL T0287 92 :ESETMELLH 1dh3A 319 :ENQNKTLIE T0287 191 :MKE 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 9 number of extra gaps= 6 total=2012 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1154387220.pdb -s /var/tmp/to_scwrl_1154387220.seq -o /var/tmp/from_scwrl_1154387220.pdb > /var/tmp/scwrl_1154387220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1154387220.pdb Number of alignments=218 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t06-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=2017 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=2022 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 5 total=2026 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 T0287 7 :KLFSMIADSKDKKEKL 1dh3A 292 :KNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 3 total=2030 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t2k-global-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)Q53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)M54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2036 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-global-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2042 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 285 :KRE T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 6 number of extra gaps= 6 total=2048 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :M 1dh3A 285 :K T0287 15 :SKD 1dh3A 286 :REV T0287 20 :EKLIESLQENE 1dh3A 291 :MKNREAARESR T0287 45 :KTMHDF 1dh3A 302 :RKKKEY T0287 53 :QMHTN 1dh3A 310 :SLENR T0287 60 :AL 1dh3A 317 :VL T0287 92 :ESETMELLH 1dh3A 319 :ENQNKTLIE T0287 191 :MKE 1dh3A 331 :ALK T0287 196 :VQ 1dh3A 336 :YS Number of specific fragments extracted= 9 number of extra gaps= 6 total=2057 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1201365729.pdb -s /var/tmp/to_scwrl_1201365729.seq -o /var/tmp/from_scwrl_1201365729.pdb > /var/tmp/scwrl_1201365729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201365729.pdb Number of alignments=219 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-adpstyle1.a2m # 1dh3A read from T0287-1dh3A-t2k-local-adpstyle1.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 14 :DSKDKKEKL 1dh3A 299 :ESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y Number of specific fragments extracted= 5 number of extra gaps= 4 total=2062 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-local-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 T0287 13 :ADSKDKKEKL 1dh3A 298 :RESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :FK 1dh3A 336 :YS Number of specific fragments extracted= 5 number of extra gaps= 4 total=2067 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 5 total=2071 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dh3A read from T0287-1dh3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dh3A in template set Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 T0287 7 :KLFSMIADSKDKKEKL 1dh3A 292 :KNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK Number of specific fragments extracted= 4 number of extra gaps= 3 total=2075 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dh3A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dh3A-t2k-muscle.a2m.gz # 1dh3A read from T0287-1dh3A-t2k-muscle.a2m.gz # found chain 1dh3A in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L290 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L290 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)K309 Warning: unaligning (T0287)E24 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K309 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)A316 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)A316 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L329 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L329 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)K330 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dh3A)L335 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dh3A)L335 Warning: unaligning (T0287)N198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dh3A)K339 Warning: unaligning (T0287)A199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dh3A)K339 T0287 1 :MSN 1dh3A 286 :REV T0287 6 :RKLFSMIADSKDKKEKL 1dh3A 291 :MKNREAARESRRKKKEY T0287 25 :SLQEN 1dh3A 310 :SLENR T0287 32 :LNTDEKKKIID 1dh3A 317 :VLENQNKTLIE T0287 46 :TMH 1dh3A 331 :ALK T0287 51 :F 1dh3A 336 :Y T0287 197 :Q 1dh3A 337 :S Number of specific fragments extracted= 7 number of extra gaps= 6 total=2082 # command:# Prefix for input files set to 1dk0A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b2vA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b2vA-T0287-fssp-global-adpstyle5.a2m # 1dk0A read from 1b2vA-T0287-fssp-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SK 1dk0A 9 :SS T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDK 1dk0A 45 :FYGGSLSG T0287 88 :YRLLES 1dk0A 53 :SQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDT T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLK 1dk0A 110 :VPDVSFGGLNLSSLQAQGHDGVVHQVVYGLM T0287 170 :TIEQYNDYVRD 1dk0A 143 :DTGALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEKGVQNA 1dk0A 160 :LSVNSTFDQVAAATA Number of specific fragments extracted= 12 number of extra gaps= 6 total=2094 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2145943162.pdb -s /var/tmp/to_scwrl_2145943162.seq -o /var/tmp/from_scwrl_2145943162.pdb > /var/tmp/scwrl_2145943162.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2145943162.pdb Number of alignments=220 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b2vA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b2vA-T0287-fssp-local-adpstyle5.a2m # 1dk0A read from 1b2vA-T0287-fssp-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2096 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-global-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t04-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)F121 because last residue in template chain is (1dk0A)A174 T0287 2 :SNNMRKLFSMIA 1dk0A 24 :ASTFGDVNHTNG T0287 16 :KD 1dk0A 38 :TD T0287 18 :KKEKLIESLQENE 1dk0A 46 :YGGSLSGSQYAIS T0287 33 :NTDEK 1dk0A 61 :ANQVT T0287 40 :IIDQIKTMHDFFKQMHTNKGALDKVL 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLS T0287 66 :R 1dk0A 105 :P T0287 69 :MKDYRAVIKSIGVDKF 1dk0A 108 :IQVPDVSFGGLNLSSL T0287 85 :KKVYRLLESETMEL 1dk0A 134 :QVVYGLMSGDTGAL T0287 99 :LHA 1dk0A 151 :LNG T0287 104 :ENPNF 1dk0A 156 :DDYGL T0287 109 :LFSKFDRSILGI 1dk0A 162 :VNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 5 total=2107 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_753301929.pdb -s /var/tmp/to_scwrl_753301929.seq -o /var/tmp/from_scwrl_753301929.pdb > /var/tmp/scwrl_753301929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753301929.pdb Number of alignments=221 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-global-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t04-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IK 1dk0A 45 :FY T0287 78 :SIG 1dk0A 56 :AIS T0287 83 :K 1dk0A 61 :A T0287 85 :KKVY 1dk0A 62 :NQVT T0287 91 :LESE 1dk0A 68 :VAGG T0287 98 :LLHAIAENP 1dk0A 73 :LTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL T0287 135 :IREMD 1dk0A 101 :GDTSP T0287 142 :IELYGTNLPLLKLFVMTDEE 1dk0A 108 :IQVPDVSFGGLNLSSLQAQG T0287 167 :NLKTIEQYNDY 1dk0A 143 :DTGALETALNG T0287 180 :D 1dk0A 156 :D T0287 182 :LMKFDLEKYMKEKGVQNA 1dk0A 157 :DYGLSVNSTFDQVAAATA Number of specific fragments extracted= 16 number of extra gaps= 8 total=2123 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_445287447.pdb -s /var/tmp/to_scwrl_445287447.seq -o /var/tmp/from_scwrl_445287447.pdb > /var/tmp/scwrl_445287447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_445287447.pdb Number of alignments=222 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-local-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t04-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 54 :MHTNKGALDKVLRN 1dk0A 140 :MSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2125 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t04-local-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t04-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 52 :KQMHTNKGALDKVLRN 1dk0A 138 :GLMSGDTGALETALNG T0287 70 :KDYRAVIK 1dk0A 156 :DDYGLSVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=2127 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-global-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t06-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 4 :NMRK 1dk0A 3 :FSVN T0287 10 :SMIAD 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 74 :AVIKSIG 1dk0A 52 :GSQYAIS T0287 83 :KFKKV 1dk0A 61 :ANQVT T0287 90 :LLESETMELL 1dk0A 68 :VAGGNLTYTL T0287 102 :IAENPNFLFSKFDRSILGIFL 1dk0A 78 :FNEPAHTLYGQLDSLSFGDGL T0287 135 :IREMDSQ 1dk0A 99 :SGGDTSP T0287 144 :LYGTNLPLLKLFVMTDEE 1dk0A 108 :IQVPDVSFGGLNLSSLQA T0287 168 :LKTIEQYNDYVRDLL 1dk0A 126 :QGHDGVVHQVVYGLM T0287 183 :MKFDLEK 1dk0A 147 :LETALNG T0287 192 :KEKGVQ 1dk0A 156 :DDYGLS T0287 198 :NA 1dk0A 173 :TA Number of specific fragments extracted= 14 number of extra gaps= 7 total=2141 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1713584213.pdb -s /var/tmp/to_scwrl_1713584213.seq -o /var/tmp/from_scwrl_1713584213.pdb > /var/tmp/scwrl_1713584213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1713584213.pdb Number of alignments=223 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-global-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t06-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 11 :MIA 1dk0A 4 :SVN T0287 16 :KDKKE 1dk0A 9 :SSFGG T0287 23 :IESLQENELLNTDEKKKIID 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 68 :YM 1dk0A 45 :FY T0287 70 :KDYRAVIKSIG 1dk0A 48 :GSLSGSQYAIS T0287 83 :KFKKV 1dk0A 61 :ANQVT T0287 90 :LLESE 1dk0A 68 :VAGGN T0287 98 :LLHAIAENP 1dk0A 73 :LTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL T0287 135 :IREMDSQ 1dk0A 99 :SGGDTSP T0287 144 :LYGTNLPLLKLFVMTDEE 1dk0A 108 :IQVPDVSFGGLNLSSLQA T0287 171 :IEQYNDYVRDLL 1dk0A 129 :DGVVHQVVYGLM T0287 183 :MKFDLEK 1dk0A 147 :LETALNG T0287 192 :KEKGVQ 1dk0A 156 :DDYGLS T0287 198 :NA 1dk0A 173 :TA Number of specific fragments extracted= 15 number of extra gaps= 7 total=2156 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1252491778.pdb -s /var/tmp/to_scwrl_1252491778.seq -o /var/tmp/from_scwrl_1252491778.pdb > /var/tmp/scwrl_1252491778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1252491778.pdb Number of alignments=224 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-local-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t06-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 183 :MKFDLEK 1dk0A 147 :LETALNG T0287 192 :KEKGV 1dk0A 156 :DDYGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=2158 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t06-local-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t06-local-adpstyle5.a2m # found chain 1dk0A in training set T0287 98 :LLHAIAENP 1dk0A 73 :LTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2160 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_843013341.pdb -s /var/tmp/to_scwrl_843013341.seq -o /var/tmp/from_scwrl_843013341.pdb > /var/tmp/scwrl_843013341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843013341.pdb Number of alignments=225 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-global-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t2k-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)Y88 because last residue in template chain is (1dk0A)A174 T0287 1 :MSNNMRKLFSMIADSKDKK 1dk0A 16 :IHDYLGQWASTFGDVNHTN T0287 20 :E 1dk0A 65 :T T0287 23 :IESLQENELLNTDEKKKIIDQIKTM 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSL T0287 48 :HDFFKQMHTNKGALDKVLRN 1dk0A 134 :QVVYGLMSGDTGALETALNG T0287 70 :KDYRAVIKSIGVDKFKKV 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 5 number of extra gaps= 2 total=2165 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1887370838.pdb -s /var/tmp/to_scwrl_1887370838.seq -o /var/tmp/from_scwrl_1887370838.pdb > /var/tmp/scwrl_1887370838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887370838.pdb Number of alignments=226 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-global-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t2k-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 1 :MSNNMRKLFSMIADSKDKK 1dk0A 16 :IHDYLGQWASTFGDVNHTN T0287 20 :E 1dk0A 65 :T T0287 23 :IESLQENELLNTDEKKKIIDQIKTM 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSL T0287 48 :H 1dk0A 115 :F T0287 49 :DFFKQMHTNKGALDKVLRN 1dk0A 135 :VVYGLMSGDTGALETALNG T0287 70 :KDYRAVIKSI 1dk0A 156 :DDYGLSVNST Number of specific fragments extracted= 6 number of extra gaps= 2 total=2171 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1934956071.pdb -s /var/tmp/to_scwrl_1934956071.seq -o /var/tmp/from_scwrl_1934956071.pdb > /var/tmp/scwrl_1934956071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1934956071.pdb Number of alignments=227 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-local-adpstyle1.a2m # 1dk0A read from 1dk0A-T0287-t2k-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2173 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dk0A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1dk0A-T0287-t2k-local-adpstyle5.a2m # 1dk0A read from 1dk0A-T0287-t2k-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2175 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-simplesw-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-simplesw-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2177 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-simplesw-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-simplesw-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2179 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t04-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :NNMR 1dk0A 3 :FSVN T0287 9 :FSMIA 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVY 1dk0A 45 :FYGGSLSGSQYAI T0287 93 :S 1dk0A 58 :S T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 7 total=2190 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_635828207.pdb -s /var/tmp/to_scwrl_635828207.seq -o /var/tmp/from_scwrl_635828207.pdb > /var/tmp/scwrl_635828207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_635828207.pdb Number of alignments=228 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :N 1dk0A 3 :F T0287 10 :SMI 1dk0A 4 :SVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVD 1dk0A 45 :FYGGSLS T0287 87 :VYRLLES 1dk0A 52 :GSQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 12 number of extra gaps= 7 total=2202 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_642080906.pdb -s /var/tmp/to_scwrl_642080906.seq -o /var/tmp/from_scwrl_642080906.pdb > /var/tmp/scwrl_642080906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642080906.pdb Number of alignments=229 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGAL 1dk0A 16 :IHDYLGQWASTFGDV T0287 77 :KSI 1dk0A 33 :TNG T0287 82 :DKFKK 1dk0A 38 :TDANS T0287 109 :LFS 1dk0A 56 :AIS T0287 114 :DRSIL 1dk0A 61 :ANQVT T0287 119 :GIFLPFFSKP 1dk0A 72 :NLTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 105 :P T0287 147 :TNLPLLKLF 1dk0A 108 :IQVPDVSFG T0287 156 :VMTDEEVNFYANLKTI 1dk0A 120 :LSSLQAQGHDGVVHQV T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMK 1dk0A 166 :FDQVAAAT Number of specific fragments extracted= 15 number of extra gaps= 6 total=2217 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1366791538.pdb -s /var/tmp/to_scwrl_1366791538.seq -o /var/tmp/from_scwrl_1366791538.pdb > /var/tmp/scwrl_1366791538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366791538.pdb Number of alignments=230 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)G195 because last residue in template chain is (1dk0A)A174 T0287 11 :MI 1dk0A 5 :VN T0287 15 :SK 1dk0A 9 :SS T0287 31 :L 1dk0A 11 :F T0287 37 :KK 1dk0A 12 :GG T0287 47 :MHDFFKQMHT 1dk0A 16 :IHDYLGQWAS T0287 75 :VIKSIGVDK 1dk0A 26 :TFGDVNHTN T0287 105 :NPNFL 1dk0A 38 :TDANS T0287 112 :KFDRSILG 1dk0A 45 :FYGGSLSG T0287 120 :IFLPFFSKP 1dk0A 73 :LTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 108 :I T0287 148 :NLPLLKL 1dk0A 109 :QVPDVSF T0287 155 :FVMTDEEVN 1dk0A 120 :LSSLQAQGH T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEK 1dk0A 164 :STFDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 5 total=2233 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1680737550.pdb -s /var/tmp/to_scwrl_1680737550.seq -o /var/tmp/from_scwrl_1680737550.pdb > /var/tmp/scwrl_1680737550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1680737550.pdb Number of alignments=231 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t04-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2235 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2237 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 80 :GVD 1dk0A 159 :GLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=2240 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1636251432.pdb -s /var/tmp/to_scwrl_1636251432.seq -o /var/tmp/from_scwrl_1636251432.pdb > /var/tmp/scwrl_1636251432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1636251432.pdb Number of alignments=232 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E92 because last residue in template chain is (1dk0A)A174 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 78 :SIGVD 1dk0A 159 :GLSVN T0287 83 :KFKKVYRLL 1dk0A 165 :TFDQVAAAT Number of specific fragments extracted= 4 number of extra gaps= 1 total=2244 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_597357728.pdb -s /var/tmp/to_scwrl_597357728.seq -o /var/tmp/from_scwrl_597357728.pdb > /var/tmp/scwrl_597357728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_597357728.pdb Number of alignments=233 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t06-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :NNMR 1dk0A 3 :FSVN T0287 9 :FSMIA 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVY 1dk0A 45 :FYGGSLSGSQYAI T0287 93 :S 1dk0A 58 :S T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 7 total=2255 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1829438424.pdb -s /var/tmp/to_scwrl_1829438424.seq -o /var/tmp/from_scwrl_1829438424.pdb > /var/tmp/scwrl_1829438424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1829438424.pdb Number of alignments=234 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :N 1dk0A 3 :F T0287 10 :SMI 1dk0A 4 :SVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVD 1dk0A 45 :FYGGSLS T0287 87 :VYRLLES 1dk0A 52 :GSQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 12 number of extra gaps= 7 total=2267 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1731562564.pdb -s /var/tmp/to_scwrl_1731562564.seq -o /var/tmp/from_scwrl_1731562564.pdb > /var/tmp/scwrl_1731562564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1731562564.pdb Number of alignments=235 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGAL 1dk0A 16 :IHDYLGQWASTFGDV T0287 77 :KSI 1dk0A 33 :TNG T0287 82 :DKFKK 1dk0A 38 :TDANS T0287 109 :LFS 1dk0A 56 :AIS T0287 114 :DRSIL 1dk0A 61 :ANQVT T0287 119 :GIFLPFFSKP 1dk0A 72 :NLTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 105 :P T0287 147 :TNLPLLKLF 1dk0A 108 :IQVPDVSFG T0287 156 :VMTDEEVNFYANLKTI 1dk0A 120 :LSSLQAQGHDGVVHQV T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMK 1dk0A 166 :FDQVAAAT Number of specific fragments extracted= 15 number of extra gaps= 6 total=2282 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1277431830.pdb -s /var/tmp/to_scwrl_1277431830.seq -o /var/tmp/from_scwrl_1277431830.pdb > /var/tmp/scwrl_1277431830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1277431830.pdb Number of alignments=236 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)G195 because last residue in template chain is (1dk0A)A174 T0287 11 :MI 1dk0A 5 :VN T0287 15 :SK 1dk0A 9 :SS T0287 31 :L 1dk0A 11 :F T0287 37 :KK 1dk0A 12 :GG T0287 47 :MHDFFKQMHT 1dk0A 16 :IHDYLGQWAS T0287 75 :VIKSIGVDK 1dk0A 26 :TFGDVNHTN T0287 105 :NPNFL 1dk0A 38 :TDANS T0287 112 :KFDRSILG 1dk0A 45 :FYGGSLSG T0287 120 :IFLPFFSKP 1dk0A 73 :LTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 108 :I T0287 148 :NLPLLKL 1dk0A 109 :QVPDVSF T0287 155 :FVMTDEEVN 1dk0A 120 :LSSLQAQGH T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEK 1dk0A 164 :STFDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 5 total=2298 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1347325233.pdb -s /var/tmp/to_scwrl_1347325233.seq -o /var/tmp/from_scwrl_1347325233.pdb > /var/tmp/scwrl_1347325233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1347325233.pdb Number of alignments=237 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t06-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2300 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2302 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 80 :GVD 1dk0A 159 :GLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=2305 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1731621170.pdb -s /var/tmp/to_scwrl_1731621170.seq -o /var/tmp/from_scwrl_1731621170.pdb > /var/tmp/scwrl_1731621170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1731621170.pdb Number of alignments=238 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E92 because last residue in template chain is (1dk0A)A174 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 78 :SIGVD 1dk0A 159 :GLSVN T0287 83 :KFKKVYRLL 1dk0A 165 :TFDQVAAAT Number of specific fragments extracted= 4 number of extra gaps= 1 total=2309 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1644645406.pdb -s /var/tmp/to_scwrl_1644645406.seq -o /var/tmp/from_scwrl_1644645406.pdb > /var/tmp/scwrl_1644645406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1644645406.pdb Number of alignments=239 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t2k-global-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :NNMR 1dk0A 3 :FSVN T0287 9 :FSMIA 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVY 1dk0A 45 :FYGGSLSGSQYAI T0287 93 :S 1dk0A 58 :S T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 11 number of extra gaps= 7 total=2320 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1584838163.pdb -s /var/tmp/to_scwrl_1584838163.seq -o /var/tmp/from_scwrl_1584838163.pdb > /var/tmp/scwrl_1584838163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1584838163.pdb Number of alignments=240 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-global-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 3 :N 1dk0A 3 :F T0287 10 :SMI 1dk0A 4 :SVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVD 1dk0A 45 :FYGGSLS T0287 87 :VYRLLES 1dk0A 52 :GSQYAIS T0287 96 :MELLH 1dk0A 61 :ANQVT T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1dk0A 68 :VAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTS T0287 140 :SQIELYGTNLPLLK 1dk0A 111 :PDVSFGGLNLSSLQ T0287 154 :LFVMTDEEVNFYANLKT 1dk0A 137 :YGLMSGDTGALETALNG T0287 175 :NDYVRDLLMKFDLEKYMK 1dk0A 156 :DDYGLSVNSTFDQVAAAT Number of specific fragments extracted= 12 number of extra gaps= 7 total=2332 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1457644234.pdb -s /var/tmp/to_scwrl_1457644234.seq -o /var/tmp/from_scwrl_1457644234.pdb > /var/tmp/scwrl_1457644234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1457644234.pdb Number of alignments=241 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E193 because last residue in template chain is (1dk0A)A174 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDK 1dk0A 9 :SSFG T0287 37 :K 1dk0A 13 :G T0287 40 :IIDQIKTMHDFFKQM 1dk0A 16 :IHDYLGQWASTFGDV T0287 55 :HTNK 1dk0A 32 :HTNG T0287 82 :DKFKK 1dk0A 38 :TDANS T0287 108 :F 1dk0A 45 :F T0287 109 :LFS 1dk0A 56 :AIS T0287 114 :DRSIL 1dk0A 61 :ANQVT T0287 119 :GIFLPFFSKP 1dk0A 72 :NLTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 105 :P T0287 147 :TNLPLLKLF 1dk0A 108 :IQVPDVSFG T0287 156 :VMTDEEVNFYANLKTI 1dk0A 120 :LSSLQAQGHDGVVHQV T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 185 :FDLEKYMK 1dk0A 166 :FDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 7 total=2348 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1819924432.pdb -s /var/tmp/to_scwrl_1819924432.seq -o /var/tmp/from_scwrl_1819924432.pdb > /var/tmp/scwrl_1819924432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819924432.pdb Number of alignments=242 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)G195 because last residue in template chain is (1dk0A)A174 T0287 11 :MI 1dk0A 5 :VN T0287 15 :SK 1dk0A 9 :SS T0287 31 :L 1dk0A 11 :F T0287 37 :KK 1dk0A 12 :GG T0287 47 :MHDFFKQMHT 1dk0A 16 :IHDYLGQWAS T0287 75 :VIKSIGVDK 1dk0A 26 :TFGDVNHTN T0287 105 :NPNFL 1dk0A 38 :TDANS T0287 112 :KFDRSILG 1dk0A 45 :FYGGSLSG T0287 120 :IFLPFFSKP 1dk0A 73 :LTYTLFNEP T0287 129 :IMFKMSIREMDSQ 1dk0A 92 :LSFGDGLSGGDTS T0287 144 :L 1dk0A 108 :I T0287 148 :NLPLLKL 1dk0A 109 :QVPDVSF T0287 155 :FVMTDEEVN 1dk0A 120 :LSSLQAQGH T0287 172 :EQYNDYVRD 1dk0A 145 :GALETALNG T0287 183 :MK 1dk0A 156 :DD T0287 185 :FDLEKYMKEK 1dk0A 164 :STFDQVAAAT Number of specific fragments extracted= 16 number of extra gaps= 5 total=2364 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1017792444.pdb -s /var/tmp/to_scwrl_1017792444.seq -o /var/tmp/from_scwrl_1017792444.pdb > /var/tmp/scwrl_1017792444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017792444.pdb Number of alignments=243 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-adpstyle1.a2m # 1dk0A read from T0287-1dk0A-t2k-local-adpstyle1.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 51 :FKQMHTNKGALDKVLRN 1dk0A 137 :YGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2366 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-local-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDYRAVIKS 1dk0A 156 :DDYGLSVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=2368 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 36 :EKKKIIDQI 1dk0A 127 :GHDGVVHQV T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 80 :G 1dk0A 159 :G Number of specific fragments extracted= 4 number of extra gaps= 1 total=2372 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1337221593.pdb -s /var/tmp/to_scwrl_1337221593.seq -o /var/tmp/from_scwrl_1337221593.pdb > /var/tmp/scwrl_1337221593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337221593.pdb Number of alignments=244 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dk0A read from T0287-1dk0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 Warning: unaligning (T0287)E92 because last residue in template chain is (1dk0A)A174 T0287 50 :FFKQMHTNKGALDKVLRN 1dk0A 136 :VYGLMSGDTGALETALNG T0287 70 :KDY 1dk0A 156 :DDY T0287 78 :SIGVD 1dk0A 159 :GLSVN T0287 83 :KFKKVYRLL 1dk0A 165 :TFDQVAAAT Number of specific fragments extracted= 4 number of extra gaps= 1 total=2376 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_350216880.pdb -s /var/tmp/to_scwrl_350216880.seq -o /var/tmp/from_scwrl_350216880.pdb > /var/tmp/scwrl_350216880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_350216880.pdb Number of alignments=245 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dk0A-t04-muscle.a2m.gz # 1dk0A read from T0287-1dk0A-t04-muscle.a2m.gz # found chain 1dk0A in training set Warning: unaligning (T0287)I23 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 24 :ESLQ 1dk0A 3 :FSVN T0287 30 :ELLNT 1dk0A 9 :SSFGG T0287 47 :MHDFFKQMHTNKGALDKVLR 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 69 :MKDYR 1dk0A 38 :TDANS T0287 76 :IKSIGVDKFKKVYR 1dk0A 45 :FYGGSLSGSQYAIS T0287 92 :ESETM 1dk0A 61 :ANQVT T0287 97 :ELLHAIAENP 1dk0A 72 :NLTYTLFNEP T0287 107 :NFLFSKFDRSILGIFL 1dk0A 83 :HTLYGQLDSLSFGDGL T0287 123 :P 1dk0A 105 :P T0287 126 :SKPIMFKMSIREMDSQIEL 1dk0A 108 :IQVPDVSFGGLNLSSLQAQ T0287 145 :YGTNLPLLKLFVMTDEEVNFYANLKT 1dk0A 128 :HDGVVHQVVYGLMSGDTGALETALNG T0287 175 :NDY 1dk0A 156 :DDY T0287 184 :KFDLEKYMKEKGVQNA 1dk0A 159 :GLSVNSTFDQVAAATA Number of specific fragments extracted= 13 number of extra gaps= 7 total=2389 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1431019200.pdb -s /var/tmp/to_scwrl_1431019200.seq -o /var/tmp/from_scwrl_1431019200.pdb > /var/tmp/scwrl_1431019200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1431019200.pdb Number of alignments=246 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dk0A-t06-muscle.a2m.gz # 1dk0A read from T0287-1dk0A-t06-muscle.a2m.gz # found chain 1dk0A in training set Warning: unaligning (T0287)L8 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)K70 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 22 :LIESLQENELLNTDEKKKII 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 44 :IKTMH 1dk0A 38 :TDANS T0287 51 :F 1dk0A 45 :F T0287 57 :NKGALDKVLRNYM 1dk0A 46 :YGGSLSGSQYAIS T0287 72 :YRAVI 1dk0A 61 :ANQVT T0287 79 :IGVDKFKKVY 1dk0A 68 :VAGGNLTYTL T0287 102 :IAENPNFLFSKFDRSILGIFLP 1dk0A 78 :FNEPAHTLYGQLDSLSFGDGLS T0287 124 :FF 1dk0A 104 :SP T0287 128 :PIMFKMSIREMDSQIELYGTNLPLLKLFV 1dk0A 108 :IQVPDVSFGGLNLSSLQAQGHDGVVHQVV T0287 157 :MTDEEVNFYANLKT 1dk0A 140 :MSGDTGALETALNG T0287 173 :QYND 1dk0A 156 :DDYG T0287 185 :FDLEKYMKEKGVQNA 1dk0A 160 :LSVNSTFDQVAAATA Number of specific fragments extracted= 14 number of extra gaps= 8 total=2403 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_140029187.pdb -s /var/tmp/to_scwrl_140029187.seq -o /var/tmp/from_scwrl_140029187.pdb > /var/tmp/scwrl_140029187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_140029187.pdb Number of alignments=247 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1dk0A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1dk0A-t2k-muscle.a2m.gz # 1dk0A read from T0287-1dk0A-t2k-muscle.a2m.gz # found chain 1dk0A in training set Warning: unaligning (T0287)L8 because first residue in template chain is (1dk0A)A2 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)D8 Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)D8 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S15 Warning: unaligning (T0287)K21 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S15 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)V37 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)V37 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)G44 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)G44 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)T60 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)T60 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)F67 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)F67 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)S107 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)S107 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (1dk0A)L155 T0287 9 :FSMI 1dk0A 3 :FSVN T0287 15 :SKDKK 1dk0A 9 :SSFGG T0287 22 :LIESLQENELLNTDEKKKII 1dk0A 16 :IHDYLGQWASTFGDVNHTNG T0287 44 :IKTMH 1dk0A 38 :TDANS T0287 51 :FKQMHTNKGALD 1dk0A 45 :FYGGSLSGSQYA T0287 65 :LR 1dk0A 57 :IS T0287 69 :MKDYR 1dk0A 61 :ANQVT T0287 76 :IKS 1dk0A 68 :VAG T0287 96 :MELLHAIAENP 1dk0A 71 :GNLTYTLFNEP T0287 107 :NFLFSKFDRSILGIFLPFFSKP 1dk0A 83 :HTLYGQLDSLSFGDGLSGGDTS T0287 132 :K 1dk0A 105 :P T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRD 1dk0A 108 :IQVPDVSFGGLNLSSLQAQGHDGVVHQVVYGLMSGDTGALETALNG T0287 183 :MKFDLEKYMKEKGVQNA 1dk0A 156 :DDYGLSVNSTFDQVAAA Number of specific fragments extracted= 13 number of extra gaps= 8 total=2416 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1802202041.pdb -s /var/tmp/to_scwrl_1802202041.seq -o /var/tmp/from_scwrl_1802202041.pdb > /var/tmp/scwrl_1802202041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802202041.pdb Number of alignments=248 # command:# Prefix for input files set to 1e96B/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-global-adpstyle5.a2m # 1e96B read from 1e96B-T0287-fssp-global-adpstyle5.a2m # found chain 1e96B in template set T0287 43 :QIKTMHDFFKQM 1e96B 21 :DWKGALDAFSAV T0287 56 :TNKGA 1e96B 34 :DPHSR T0287 67 :NYMKDY 1e96B 39 :ICFNIG T0287 95 :TMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQ 1e96B 57 :EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG T0287 142 :IELYGTNLPLLKLFVMTDEEV 1e96B 109 :YKILGLQFKLFACEVLYNIAF T0287 164 :FYANLKTIEQYNDYVRDLL 1e96B 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFDLEKYMKEKGVQN 1e96B 152 :SEPRHSKIDKAMECVW Number of specific fragments extracted= 7 number of extra gaps= 0 total=2423 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_437922774.pdb -s /var/tmp/to_scwrl_437922774.seq -o /var/tmp/from_scwrl_437922774.pdb > /var/tmp/scwrl_437922774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437922774.pdb Number of alignments=249 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-local-adpstyle5.a2m # 1e96B read from 1e96B-T0287-fssp-local-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 114 :DRSILGIFLPFFSKPIMFKMSIR 1e96B 108 :DYKILGLQFKLFACEVLYNIAFM T0287 137 :EMDSQIE 1e96B 132 :AKKEEWK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2425 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1341394916.pdb -s /var/tmp/to_scwrl_1341394916.seq -o /var/tmp/from_scwrl_1341394916.pdb > /var/tmp/scwrl_1341394916.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1341394916.pdb Number of alignments=250 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-global-adpstyle1.a2m # 1e96B read from 1e96B-T0287-t2k-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S140 because last residue in template chain is (1e96B)N186 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESL 1e96B 4 :VEAISLWNEGVLAADKKDWKGALDAF T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 30 :SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 84 :FKKVYRLLESE 1e96B 94 :LKEALIQLRGN T0287 95 :TMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1e96B 141 :EEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2429 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1800661556.pdb -s /var/tmp/to_scwrl_1800661556.seq -o /var/tmp/from_scwrl_1800661556.pdb > /var/tmp/scwrl_1800661556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800661556.pdb Number of alignments=251 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-global-adpstyle5.a2m # 1e96B read from 1e96B-T0287-t2k-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S140 because last residue in template chain is (1e96B)N186 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESL 1e96B 4 :VEAISLWNEGVLAADKKDWKGALDAF T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 1e96B 30 :SAVQDPHSRICFNIGCMYTILKNM T0287 130 :MFKMSIREMD 1e96B 176 :VIPVGKLFRP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2432 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1191224702.pdb -s /var/tmp/to_scwrl_1191224702.seq -o /var/tmp/from_scwrl_1191224702.pdb > /var/tmp/scwrl_1191224702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1191224702.pdb Number of alignments=252 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-local-adpstyle1.a2m # 1e96B read from 1e96B-T0287-t2k-local-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S140 because last residue in template chain is (1e96B)N186 T0287 98 :LLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1e96B 144 :LALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=2433 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1786682364.pdb -s /var/tmp/to_scwrl_1786682364.seq -o /var/tmp/from_scwrl_1786682364.pdb > /var/tmp/scwrl_1786682364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1786682364.pdb Number of alignments=253 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-t2k-local-adpstyle5.a2m # 1e96B read from 1e96B-T0287-t2k-local-adpstyle5.a2m # found chain 1e96B in template set T0287 97 :ELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSI 1e96B 143 :QLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2434 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1366762123.pdb -s /var/tmp/to_scwrl_1366762123.seq -o /var/tmp/from_scwrl_1366762123.pdb > /var/tmp/scwrl_1366762123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366762123.pdb Number of alignments=254 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-simplesw-adpstyle1.a2m # 1e96B read from T0287-1e96B-simplesw-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2435 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_296232835.pdb -s /var/tmp/to_scwrl_296232835.seq -o /var/tmp/from_scwrl_296232835.pdb > /var/tmp/scwrl_296232835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_296232835.pdb Number of alignments=255 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-simplesw-adpstyle5.a2m # 1e96B read from T0287-1e96B-simplesw-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2436 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_482212058.pdb -s /var/tmp/to_scwrl_482212058.seq -o /var/tmp/from_scwrl_482212058.pdb > /var/tmp/scwrl_482212058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482212058.pdb Number of alignments=256 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-adpstyle1.a2m # 1e96B read from T0287-1e96B-t04-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 22 :LIE 1e96B 3 :LVE T0287 25 :SLQENELLNTDEK 1e96B 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1e96B 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 7 number of extra gaps= 1 total=2443 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1106649314.pdb -s /var/tmp/to_scwrl_1106649314.seq -o /var/tmp/from_scwrl_1106649314.pdb > /var/tmp/scwrl_1106649314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1106649314.pdb Number of alignments=257 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 3 :NNM 1e96B 3 :LVE T0287 23 :IESLQENELLNTDEK 1e96B 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1e96B 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=2449 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_83705259.pdb -s /var/tmp/to_scwrl_83705259.seq -o /var/tmp/from_scwrl_83705259.pdb > /var/tmp/scwrl_83705259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_83705259.pdb Number of alignments=258 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NNMR 1e96B 3 :LVEA T0287 7 :KLFS 1e96B 8 :SLWN T0287 11 :MIADSKD 1e96B 15 :LAADKKD T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 22 :WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1e96B 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1e96B 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFD 1e96B 150 :MKSE T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 10 number of extra gaps= 1 total=2459 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1118040265.pdb -s /var/tmp/to_scwrl_1118040265.seq -o /var/tmp/from_scwrl_1118040265.pdb > /var/tmp/scwrl_1118040265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118040265.pdb Number of alignments=259 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NN 1e96B 3 :LV T0287 5 :MRKLFS 1e96B 6 :AISLWN T0287 11 :MIADSKDK 1e96B 15 :LAADKKDW T0287 20 :EKLIESLQEN 1e96B 23 :KGALDAFSAV T0287 34 :TDEKKKII 1e96B 33 :QDPHSRIC T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKD 1e96B 41 :FNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2471 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1748730220.pdb -s /var/tmp/to_scwrl_1748730220.seq -o /var/tmp/from_scwrl_1748730220.pdb > /var/tmp/scwrl_1748730220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748730220.pdb Number of alignments=260 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-adpstyle1.a2m # 1e96B read from T0287-1e96B-t04-local-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2472 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1450496798.pdb -s /var/tmp/to_scwrl_1450496798.seq -o /var/tmp/from_scwrl_1450496798.pdb > /var/tmp/scwrl_1450496798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450496798.pdb Number of alignments=261 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-local-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2473 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_651294169.pdb -s /var/tmp/to_scwrl_651294169.seq -o /var/tmp/from_scwrl_651294169.pdb > /var/tmp/scwrl_651294169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_651294169.pdb Number of alignments=262 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1e96B 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2474 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1237498005.pdb -s /var/tmp/to_scwrl_1237498005.seq -o /var/tmp/from_scwrl_1237498005.pdb > /var/tmp/scwrl_1237498005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1237498005.pdb Number of alignments=263 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 18 :KKEKLIESLQE 1e96B 5 :EAISLWNEGVL T0287 31 :LLNTDEKKKIIDQIKTMHD 1e96B 16 :AADKKDWKGALDAFSAVQD T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1e96B 45 :CMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQN 1e96B 159 :IDKAMECVWKQK Number of specific fragments extracted= 9 number of extra gaps= 1 total=2483 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2047854526.pdb -s /var/tmp/to_scwrl_2047854526.seq -o /var/tmp/from_scwrl_2047854526.pdb > /var/tmp/scwrl_2047854526.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2047854526.pdb Number of alignments=264 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-adpstyle1.a2m # 1e96B read from T0287-1e96B-t06-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 22 :LIE 1e96B 3 :LVE T0287 25 :SLQENELLNTDEK 1e96B 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1e96B 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 7 number of extra gaps= 1 total=2490 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_333248946.pdb -s /var/tmp/to_scwrl_333248946.seq -o /var/tmp/from_scwrl_333248946.pdb > /var/tmp/scwrl_333248946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_333248946.pdb Number of alignments=265 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 3 :NNM 1e96B 3 :LVE T0287 23 :IESLQENELLNTDEK 1e96B 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1e96B 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=2496 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_821576924.pdb -s /var/tmp/to_scwrl_821576924.seq -o /var/tmp/from_scwrl_821576924.pdb > /var/tmp/scwrl_821576924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821576924.pdb Number of alignments=266 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NNMR 1e96B 3 :LVEA T0287 7 :KLFS 1e96B 8 :SLWN T0287 11 :MIADSKD 1e96B 15 :LAADKKD T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 22 :WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1e96B 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1e96B 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFD 1e96B 150 :MKSE T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 10 number of extra gaps= 1 total=2506 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1177802709.pdb -s /var/tmp/to_scwrl_1177802709.seq -o /var/tmp/from_scwrl_1177802709.pdb > /var/tmp/scwrl_1177802709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1177802709.pdb Number of alignments=267 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NN 1e96B 3 :LV T0287 5 :MRKLFS 1e96B 6 :AISLWN T0287 11 :MIADSKDK 1e96B 15 :LAADKKDW T0287 20 :EKLIESLQEN 1e96B 23 :KGALDAFSAV T0287 34 :TDEKKKII 1e96B 33 :QDPHSRIC T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKD 1e96B 41 :FNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2518 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1680574179.pdb -s /var/tmp/to_scwrl_1680574179.seq -o /var/tmp/from_scwrl_1680574179.pdb > /var/tmp/scwrl_1680574179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1680574179.pdb Number of alignments=268 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-adpstyle1.a2m # 1e96B read from T0287-1e96B-t06-local-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2519 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_405714447.pdb -s /var/tmp/to_scwrl_405714447.seq -o /var/tmp/from_scwrl_405714447.pdb > /var/tmp/scwrl_405714447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_405714447.pdb Number of alignments=269 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-local-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2520 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_674964469.pdb -s /var/tmp/to_scwrl_674964469.seq -o /var/tmp/from_scwrl_674964469.pdb > /var/tmp/scwrl_674964469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_674964469.pdb Number of alignments=270 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1e96B 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2521 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1117928695.pdb -s /var/tmp/to_scwrl_1117928695.seq -o /var/tmp/from_scwrl_1117928695.pdb > /var/tmp/scwrl_1117928695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1117928695.pdb Number of alignments=271 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 18 :KKEKLIESLQE 1e96B 5 :EAISLWNEGVL T0287 31 :LLNTDEKKKIIDQIKTMHD 1e96B 16 :AADKKDWKGALDAFSAVQD T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1e96B 45 :CMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQN 1e96B 159 :IDKAMECVWKQK Number of specific fragments extracted= 9 number of extra gaps= 1 total=2530 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1863358681.pdb -s /var/tmp/to_scwrl_1863358681.seq -o /var/tmp/from_scwrl_1863358681.pdb > /var/tmp/scwrl_1863358681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1863358681.pdb Number of alignments=272 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-adpstyle1.a2m # 1e96B read from T0287-1e96B-t2k-global-adpstyle1.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 22 :LIE 1e96B 3 :LVE T0287 25 :SLQENELLNTDEK 1e96B 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1e96B 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 7 number of extra gaps= 1 total=2537 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_347405255.pdb -s /var/tmp/to_scwrl_347405255.seq -o /var/tmp/from_scwrl_347405255.pdb > /var/tmp/scwrl_347405255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347405255.pdb Number of alignments=273 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-global-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 Warning: unaligning (T0287)K194 because last residue in template chain is (1e96B)N186 T0287 3 :NNM 1e96B 3 :LVE T0287 23 :IESLQENELLNTDEK 1e96B 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1e96B 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 114 :DRSILGIFLPFFSKPIMFKMSI 1e96B 108 :DYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1e96B 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=2543 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2135721139.pdb -s /var/tmp/to_scwrl_2135721139.seq -o /var/tmp/from_scwrl_2135721139.pdb > /var/tmp/scwrl_2135721139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2135721139.pdb Number of alignments=274 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NNMR 1e96B 3 :LVEA T0287 7 :KLFS 1e96B 8 :SLWN T0287 11 :MIADSKDKKEKL 1e96B 15 :LAADKKDWKGAL T0287 24 :ESLQ 1e96B 27 :DAFS T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1e96B 31 :AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIKSIGVDKFKKVYRLL 1e96B 75 :FQRGMLYYQTEKYDLAIKDL T0287 99 :LHAIAENPNF 1e96B 95 :KEALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFFSKPIM 1e96B 108 :DYKILGLQFKLFACEVL T0287 162 :VNFYANLKTIEQYNDYVRDLL 1e96B 128 :AFMYAKKEEWKKAEEQLALAT T0287 183 :MKF 1e96B 150 :MKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2555 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1053096628.pdb -s /var/tmp/to_scwrl_1053096628.seq -o /var/tmp/from_scwrl_1053096628.pdb > /var/tmp/scwrl_1053096628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053096628.pdb Number of alignments=275 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1e96B)S2 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 3 :NN 1e96B 3 :LV T0287 5 :MRKLFS 1e96B 6 :AISLWN T0287 11 :MIADSKDK 1e96B 15 :LAADKKDW T0287 20 :EKLIESLQEN 1e96B 23 :KGALDAFSAV T0287 34 :TDEKKKII 1e96B 33 :QDPHSRIC T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKD 1e96B 41 :FNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1e96B 159 :IDKAMECVWKQKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=2567 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_697622135.pdb -s /var/tmp/to_scwrl_697622135.seq -o /var/tmp/from_scwrl_697622135.pdb > /var/tmp/scwrl_697622135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697622135.pdb Number of alignments=276 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-adpstyle1.a2m # 1e96B read from T0287-1e96B-t2k-local-adpstyle1.a2m # found chain 1e96B in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2568 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1419256692.pdb -s /var/tmp/to_scwrl_1419256692.seq -o /var/tmp/from_scwrl_1419256692.pdb > /var/tmp/scwrl_1419256692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419256692.pdb Number of alignments=277 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-local-adpstyle5.a2m # found chain 1e96B in template set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1e96B 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2569 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1193125814.pdb -s /var/tmp/to_scwrl_1193125814.seq -o /var/tmp/from_scwrl_1193125814.pdb > /var/tmp/scwrl_1193125814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193125814.pdb Number of alignments=278 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 13 :ADSKDK 1e96B 17 :ADKKDW T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1e96B 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 84 :FKKVYRLLESETMELL 1e96B 75 :FQRGMLYYQTEKYDLA T0287 100 :HAIAENPNF 1e96B 96 :EALIQLRGN T0287 111 :S 1e96B 105 :Q T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF Number of specific fragments extracted= 6 number of extra gaps= 1 total=2575 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_352340529.pdb -s /var/tmp/to_scwrl_352340529.seq -o /var/tmp/from_scwrl_352340529.pdb > /var/tmp/scwrl_352340529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_352340529.pdb Number of alignments=279 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e96B read from T0287-1e96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e96B in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1e96B)I107 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e96B)I107 T0287 18 :KKEKLIESLQE 1e96B 5 :EAISLWNEGVL T0287 31 :LLNTDEKKKIIDQIKTMHD 1e96B 16 :AADKKDWKGALDAFSAVQD T0287 50 :FFKQMHTNKGALDKVLRNYMKD 1e96B 45 :CMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVI 1e96B 76 :QRGML T0287 78 :SIGVDKFKKVYRLLES 1e96B 81 :YYQTEKYDLAIKDLKE T0287 101 :AIAENPNFL 1e96B 97 :ALIQLRGNQ T0287 114 :DRSILGIFLPFF 1e96B 108 :DYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1e96B 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQN 1e96B 159 :IDKAMECVWKQK Number of specific fragments extracted= 9 number of extra gaps= 1 total=2584 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1857179466.pdb -s /var/tmp/to_scwrl_1857179466.seq -o /var/tmp/from_scwrl_1857179466.pdb > /var/tmp/scwrl_1857179466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857179466.pdb Number of alignments=280 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e96B-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e96B-t2k-muscle.a2m.gz # 1e96B read from T0287-1e96B-t2k-muscle.a2m.gz # found chain 1e96B in template set Warning: unaligning (T0287)D17 because first residue in template chain is (1e96B)S2 T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1e96B 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD T0287 106 :PNFLFSKFDRSILGIFLPFFSKPI 1e96B 68 :KHLAVAYFQRGMLYYQTEKYDLAI T0287 130 :MFKMSIREMDSQ 1e96B 93 :DLKEALIQLRGN T0287 142 :IELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e96B 121 :CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2588 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_387037085.pdb -s /var/tmp/to_scwrl_387037085.seq -o /var/tmp/from_scwrl_387037085.pdb > /var/tmp/scwrl_387037085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387037085.pdb Number of alignments=281 # command:# Prefix for input files set to 1e9gA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-global-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t04-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)E24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)T56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)N57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 Warning: unaligning (T0287)G195 because last residue in template chain is (1e9gA)G284 T0287 3 :NNMRKLFSMIAD 1e9gA 37 :DKENNIFNMVVE T0287 15 :S 1e9gA 50 :P T0287 18 :KKEKL 1e9gA 53 :TNAKL T0287 25 :SLQENELLNTDEKKKIIDQIKTMHDFFKQMH 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFPHHGYI T0287 58 :KGALDKVL 1e9gA 93 :YGAFPQTW T0287 66 :RNYMKDYRAVIKSIGV 1e9gA 127 :TIAYTGQVKQVKALGI T0287 82 :DKFKKVYRLL 1e9gA 147 :DEGETDWKVI T0287 92 :ESETMELLHAIAENPN 1e9gA 161 :NDPLAPKLNDIEDVEK T0287 108 :F 1e9gA 189 :F T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 1e9gA 193 :KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIA T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEK 1e9gA 240 :IDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFIS Number of specific fragments extracted= 11 number of extra gaps= 4 total=2599 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_5518439.pdb -s /var/tmp/to_scwrl_5518439.seq -o /var/tmp/from_scwrl_5518439.pdb > /var/tmp/scwrl_5518439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_5518439.pdb Number of alignments=282 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-global-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t04-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 Warning: unaligning (T0287)G195 because last residue in template chain is (1e9gA)G284 T0287 2 :SNNMRKL 1e9gA 22 :DGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESL 1e9gA 37 :DKENNIFNMV T0287 29 :NELL 1e9gA 47 :VEIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRN 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFP T0287 68 :YM 1e9gA 89 :YI T0287 72 :YRAVIKSIGVDKFKKVY 1e9gA 93 :YGAFPQTWEDPNVSHPE T0287 89 :RLLES 1e9gA 112 :AVGDN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLF 1e9gA 125 :GETIAYTG T0287 111 :SKFDRSILGIFLP 1e9gA 149 :GETDWKVIAIDIN T0287 127 :KPIM 1e9gA 162 :DPLA T0287 131 :FKMSIREMDSQ 1e9gA 167 :KLNDIEDVEKY T0287 142 :I 1e9gA 189 :F T0287 146 :GTN 1e9gA 193 :KIP T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1e9gA 197 :GKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIA T0287 184 :KFDLEKYMKEK 1e9gA 273 :DKSIDKWFFIS Number of specific fragments extracted= 18 number of extra gaps= 8 total=2617 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_900920523.pdb -s /var/tmp/to_scwrl_900920523.seq -o /var/tmp/from_scwrl_900920523.pdb > /var/tmp/scwrl_900920523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900920523.pdb Number of alignments=283 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-local-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t04-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2618 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_26235802.pdb -s /var/tmp/to_scwrl_26235802.seq -o /var/tmp/from_scwrl_26235802.pdb > /var/tmp/scwrl_26235802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_26235802.pdb Number of alignments=284 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t04-local-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t04-local-adpstyle5.a2m # found chain 1e9gA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2618 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-global-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t06-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)E24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)S25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)T56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)N57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLI 1e9gA 37 :DKENNIF T0287 26 :LQENEL 1e9gA 60 :TKEETL T0287 32 :LNTDEKKKIIDQIKTMHDFFKQM 1e9gA 68 :IIQDTKKGKLRFVRNCFPHHGYI T0287 58 :KGALDKVLRN 1e9gA 93 :YGAFPQTWED T0287 68 :YMKDYRAVIKSIGV 1e9gA 129 :AYTGQVKQVKALGI T0287 82 :DKFKKVYRLL 1e9gA 147 :DEGETDWKVI T0287 92 :ESETMELLHAIAENPNF 1e9gA 161 :NDPLAPKLNDIEDVEKY T0287 111 :SKFDRSILGIFLP 1e9gA 193 :KIPDGKPENQFAF T0287 124 :FFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 11 number of extra gaps= 3 total=2629 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1372280562.pdb -s /var/tmp/to_scwrl_1372280562.seq -o /var/tmp/from_scwrl_1372280562.pdb > /var/tmp/scwrl_1372280562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1372280562.pdb Number of alignments=285 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-global-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t06-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)E24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)S25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)T56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)N57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)F84 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLI 1e9gA 37 :DKENNIF T0287 26 :LQENEL 1e9gA 60 :TKEETL T0287 32 :LNTDEKKKIIDQIKTMHDFF 1e9gA 68 :IIQDTKKGKLRFVRNCFPHH T0287 53 :QMH 1e9gA 88 :GYI T0287 58 :KGALDKVLRN 1e9gA 93 :YGAFPQTWED T0287 68 :YMKDYRAVIKSIGVDK 1e9gA 129 :AYTGQVKQVKALGIMA T0287 85 :KKVYR 1e9gA 150 :ETDWK T0287 90 :LLESETMELLHAIAENPNF 1e9gA 159 :DINDPLAPKLNDIEDVEKY T0287 111 :SKFDRSILGIFL 1e9gA 193 :KIPDGKPENQFA T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 208 :EAKNKKYALDIIKETHDSWKQLIAGKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 12 number of extra gaps= 4 total=2641 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1197153357.pdb -s /var/tmp/to_scwrl_1197153357.seq -o /var/tmp/from_scwrl_1197153357.pdb > /var/tmp/scwrl_1197153357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197153357.pdb Number of alignments=286 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-local-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t06-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 164 :FYANLKTIEQYNDY 1e9gA 164 :LAPKLNDIEDVEKY T0287 178 :VRDLLMKF 1e9gA 181 :LLRATNEW Number of specific fragments extracted= 2 number of extra gaps= 0 total=2643 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_508447860.pdb -s /var/tmp/to_scwrl_508447860.seq -o /var/tmp/from_scwrl_508447860.pdb > /var/tmp/scwrl_508447860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508447860.pdb Number of alignments=287 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t06-local-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t06-local-adpstyle5.a2m # found chain 1e9gA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2643 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-global-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t2k-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQENE 1e9gA 37 :DKENNIFNMVVEIP T0287 33 :N 1e9gA 53 :T T0287 36 :EKKK 1e9gA 54 :NAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRN 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFP T0287 68 :YM 1e9gA 89 :YI T0287 72 :YRAVIKSIGV 1e9gA 93 :YGAFPQTWED T0287 82 :DK 1e9gA 115 :DN T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1e9gA 153 :WKVIAIDINDPLAPKLNDIEDVEKYF T0287 111 :SKFDRS 1e9gA 193 :KIPDGK T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 202 :QFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 12 number of extra gaps= 5 total=2655 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_331446230.pdb -s /var/tmp/to_scwrl_331446230.seq -o /var/tmp/from_scwrl_331446230.pdb > /var/tmp/scwrl_331446230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_331446230.pdb Number of alignments=288 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-global-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t2k-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 T0287 1 :MSNNMRKLFSMIA 1e9gA 7 :IGAKNTLEYKVYI T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 28 :ENEL 1e9gA 31 :DIPL T0287 34 :TD 1e9gA 37 :DK T0287 36 :EKKK 1e9gA 54 :NAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFPH T0287 69 :M 1e9gA 90 :I T0287 72 :YRAVIKSIGV 1e9gA 93 :YGAFPQTWED T0287 82 :D 1e9gA 115 :D T0287 83 :KFKKVYRLL 1e9gA 127 :TIAYTGQVK T0287 92 :ESETMELLHAIAENPNFLFSKFDRSI 1e9gA 148 :EGETDWKVIAIDINDPLAPKLNDIED T0287 118 :LGIFLPFF 1e9gA 182 :LRATNEWF T0287 127 :KPIMFKMSIREMDSQIELYG 1e9gA 208 :EAKNKKYALDIIKETHDSWK T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 232 :GKSSDSKGIDLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFFISG Number of specific fragments extracted= 14 number of extra gaps= 6 total=2669 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1280858616.pdb -s /var/tmp/to_scwrl_1280858616.seq -o /var/tmp/from_scwrl_1280858616.pdb > /var/tmp/scwrl_1280858616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280858616.pdb Number of alignments=289 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-local-adpstyle1.a2m # 1e9gA read from 1e9gA-T0287-t2k-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 41 :IDQIKTMHDFFKQMHTNK 1e9gA 216 :LDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2670 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e9gA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e9gA-T0287-t2k-local-adpstyle5.a2m # 1e9gA read from 1e9gA-T0287-t2k-local-adpstyle5.a2m # found chain 1e9gA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2670 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wgjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1wgjA-T0287-fssp-global-adpstyle5.a2m # 1e9gA read from 1wgjA-T0287-fssp-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNM 1e9gA 1 :TYTTR T0287 6 :RKL 1e9gA 26 :VSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQE 1e9gA 37 :DKENNIFNMVVE T0287 31 :LL 1e9gA 49 :IP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFF 1e9gA 60 :TKEETLNPII T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKFKK 1e9gA 93 :YGAFPQTWEDPNVSH T0287 87 :VYRLLES 1e9gA 110 :TKAVGDN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFS 1e9gA 125 :GETIAYTGQ T0287 112 :KFDRSILGIFLPF 1e9gA 150 :ETDWKVIAIDIND T0287 125 :FSKPIMFKMSIREMDSQI 1e9gA 172 :EDVEKYFPGLLRATNEWF T0287 146 :GTNLP 1e9gA 193 :KIPDG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKF 1e9gA 199 :PENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK T0287 186 :DLEKYMKEKGVQNA 1e9gA 269 :DAPIDKSIDKWFFI Number of specific fragments extracted= 18 number of extra gaps= 8 total=2688 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1626488125.pdb -s /var/tmp/to_scwrl_1626488125.seq -o /var/tmp/from_scwrl_1626488125.pdb > /var/tmp/scwrl_1626488125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626488125.pdb Number of alignments=290 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wgjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1wgjA-T0287-fssp-local-adpstyle5.a2m # 1e9gA read from 1wgjA-T0287-fssp-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 22 :LIESLQENELL 1e9gA 194 :IPDGKPENQFA T0287 33 :NTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1e9gA 208 :EAKNKKYALDIIKETHDSWKQLIAGKSSDSK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2690 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2080176451.pdb -s /var/tmp/to_scwrl_2080176451.seq -o /var/tmp/from_scwrl_2080176451.pdb > /var/tmp/scwrl_2080176451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080176451.pdb Number of alignments=291 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-simplesw-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-simplesw-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2691 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_583871768.pdb -s /var/tmp/to_scwrl_583871768.seq -o /var/tmp/from_scwrl_583871768.pdb > /var/tmp/scwrl_583871768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583871768.pdb Number of alignments=292 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-simplesw-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-simplesw-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGAL 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2692 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_130298647.pdb -s /var/tmp/to_scwrl_130298647.seq -o /var/tmp/from_scwrl_130298647.pdb > /var/tmp/scwrl_130298647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_130298647.pdb Number of alignments=293 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t04-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)Q43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L99 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKLFSMIA 1e9gA 39 :ENNIFNMVVEIP T0287 16 :KDKKE 1e9gA 53 :TNAKL T0287 23 :IESLQENELLNTDEKKKI 1e9gA 60 :TKEETLNPIIQDTKKGKL T0287 41 :I 1e9gA 90 :I T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1e9gA 93 :YGAFPQTWEDPNVSHPETKAVGDN T0287 70 :KDYR 1e9gA 119 :IDVL T0287 76 :IKSIGVDKFKKVYRLL 1e9gA 125 :GETIAYTGQVKQVKAL T0287 94 :ETME 1e9gA 141 :GIMA T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQI 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWF T0287 146 :G 1e9gA 193 :K T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 195 :PDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAG T0287 189 :KYMKEKGVQNA 1e9gA 233 :KSSDSKGIDLT Number of specific fragments extracted= 13 number of extra gaps= 7 total=2705 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1170190809.pdb -s /var/tmp/to_scwrl_1170190809.seq -o /var/tmp/from_scwrl_1170190809.pdb > /var/tmp/scwrl_1170190809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1170190809.pdb Number of alignments=294 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKLFSMIADSK 1e9gA 1 :TYTTRQIGAKNTLEYK T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 29 :NELL 1e9gA 31 :DIPL T0287 35 :DEKKKIIDQIKTMH 1e9gA 37 :DKENNIFNMVVEIP T0287 51 :F 1e9gA 53 :T T0287 52 :KQ 1e9gA 56 :KL T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKF 1e9gA 93 :YGAFPQTWEDPNV T0287 95 :TMELLHAIAEN 1e9gA 106 :SHPETKAVGDN T0287 108 :FLFS 1e9gA 119 :IDVL T0287 114 :DRSIL 1e9gA 125 :GETIA T0287 119 :GIFLPFFSKPIMF 1e9gA 132 :GQVKQVKALGIMA T0287 134 :SIREMDSQIELYGTNLPLL 1e9gA 147 :DEGETDWKVIAIDINDPLA T0287 153 :KLFVMTDEEVNFYANLKTIEQYN 1e9gA 167 :KLNDIEDVEKYFPGLLRATNEWF T0287 189 :KYMKEK 1e9gA 193 :KIPDGK Number of specific fragments extracted= 16 number of extra gaps= 9 total=2721 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_484242647.pdb -s /var/tmp/to_scwrl_484242647.seq -o /var/tmp/from_scwrl_484242647.pdb > /var/tmp/scwrl_484242647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484242647.pdb Number of alignments=295 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 10 :SM 1e9gA 33 :PL T0287 14 :DSKD 1e9gA 37 :DKEN T0287 19 :KEK 1e9gA 74 :KGK T0287 106 :PNFLFSKFDR 1e9gA 77 :LRFVRNCFPH T0287 118 :LGIFLPFFSKPIM 1e9gA 93 :YGAFPQTWEDPNV T0287 134 :SIREM 1e9gA 106 :SHPET T0287 143 :ELYGTN 1e9gA 111 :KAVGDN T0287 151 :L 1e9gA 119 :I T0287 152 :LKLFV 1e9gA 140 :LGIMA T0287 159 :DEEV 1e9gA 147 :DEGE T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1e9gA 163 :PLAPKLNDIEDVEKYFPGLLRATN T0287 187 :L 1e9gA 189 :F T0287 191 :MKEKGVQ 1e9gA 193 :KIPDGKP Number of specific fragments extracted= 14 number of extra gaps= 5 total=2735 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_463547594.pdb -s /var/tmp/to_scwrl_463547594.seq -o /var/tmp/from_scwrl_463547594.pdb > /var/tmp/scwrl_463547594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463547594.pdb Number of alignments=296 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 14 :DSKDK 1e9gA 37 :DKENN T0287 56 :TN 1e9gA 53 :TN T0287 58 :KG 1e9gA 74 :KG T0287 79 :IGVDKF 1e9gA 84 :FPHHGY T0287 105 :NPNFLFSKF 1e9gA 102 :DPNVSHPET T0287 114 :DR 1e9gA 115 :DN T0287 118 :LGIF 1e9gA 119 :IDVL T0287 124 :FFSKP 1e9gA 125 :GETIA T0287 130 :MFKMSIREM 1e9gA 134 :VKQVKALGI T0287 142 :IE 1e9gA 143 :MA T0287 146 :GTNLPLLKLFVM 1e9gA 147 :DEGETDWKVIAI T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 159 :DINDPLAPKLNDIEDVEKYFPGLLRA T0287 187 :LEKYM 1e9gA 185 :TNEWF T0287 195 :GVQNA 1e9gA 193 :KIPDG Number of specific fragments extracted= 15 number of extra gaps= 5 total=2750 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1991767733.pdb -s /var/tmp/to_scwrl_1991767733.seq -o /var/tmp/from_scwrl_1991767733.pdb > /var/tmp/scwrl_1991767733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991767733.pdb Number of alignments=297 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t04-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2751 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1662045356.pdb -s /var/tmp/to_scwrl_1662045356.seq -o /var/tmp/from_scwrl_1662045356.pdb > /var/tmp/scwrl_1662045356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1662045356.pdb Number of alignments=298 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALD 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=2752 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2144121773.pdb -s /var/tmp/to_scwrl_2144121773.seq -o /var/tmp/from_scwrl_2144121773.pdb > /var/tmp/scwrl_2144121773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2144121773.pdb Number of alignments=299 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2753 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_249998534.pdb -s /var/tmp/to_scwrl_249998534.seq -o /var/tmp/from_scwrl_249998534.pdb > /var/tmp/scwrl_249998534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_249998534.pdb Number of alignments=300 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2754 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_189526179.pdb -s /var/tmp/to_scwrl_189526179.seq -o /var/tmp/from_scwrl_189526179.pdb > /var/tmp/scwrl_189526179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_189526179.pdb Number of alignments=301 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t06-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)Q43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L99 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKLFSMIA 1e9gA 39 :ENNIFNMVVEIP T0287 16 :KDKKE 1e9gA 53 :TNAKL T0287 23 :IESLQENELLNTDEKKKI 1e9gA 60 :TKEETLNPIIQDTKKGKL T0287 41 :I 1e9gA 90 :I T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1e9gA 93 :YGAFPQTWEDPNVSHPETKAVGDN T0287 70 :KDYR 1e9gA 119 :IDVL T0287 76 :IKSIGVDKFKKVYRLL 1e9gA 125 :GETIAYTGQVKQVKAL T0287 94 :ETME 1e9gA 141 :GIMA T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQI 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWF T0287 146 :G 1e9gA 193 :K T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 195 :PDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAG T0287 189 :KYMKEKGVQNA 1e9gA 233 :KSSDSKGIDLT Number of specific fragments extracted= 13 number of extra gaps= 7 total=2767 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1114566822.pdb -s /var/tmp/to_scwrl_1114566822.seq -o /var/tmp/from_scwrl_1114566822.pdb > /var/tmp/scwrl_1114566822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114566822.pdb Number of alignments=302 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKLFSMIADSK 1e9gA 1 :TYTTRQIGAKNTLEYK T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 29 :NELL 1e9gA 31 :DIPL T0287 35 :DEKKKIIDQIKTMH 1e9gA 37 :DKENNIFNMVVEIP T0287 51 :F 1e9gA 53 :T T0287 52 :KQ 1e9gA 56 :KL T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKF 1e9gA 93 :YGAFPQTWEDPNV T0287 95 :TMELLHAIAEN 1e9gA 106 :SHPETKAVGDN T0287 108 :FLFS 1e9gA 119 :IDVL T0287 114 :DRSIL 1e9gA 125 :GETIA T0287 119 :GIFLPFFSKPIMF 1e9gA 132 :GQVKQVKALGIMA T0287 134 :SIREMDSQIELYGTNLPLL 1e9gA 147 :DEGETDWKVIAIDINDPLA T0287 153 :KLFVMTDEEVNFYANLKTIEQYN 1e9gA 167 :KLNDIEDVEKYFPGLLRATNEWF T0287 189 :KYMKEK 1e9gA 193 :KIPDGK Number of specific fragments extracted= 16 number of extra gaps= 9 total=2783 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2113357215.pdb -s /var/tmp/to_scwrl_2113357215.seq -o /var/tmp/from_scwrl_2113357215.pdb > /var/tmp/scwrl_2113357215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2113357215.pdb Number of alignments=303 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 10 :SM 1e9gA 33 :PL T0287 14 :DSKD 1e9gA 37 :DKEN T0287 19 :KEK 1e9gA 74 :KGK T0287 106 :PNFLFSKFDR 1e9gA 77 :LRFVRNCFPH T0287 118 :LGIFLPFFSKPIM 1e9gA 93 :YGAFPQTWEDPNV T0287 134 :SIREM 1e9gA 106 :SHPET T0287 143 :ELYGTN 1e9gA 111 :KAVGDN T0287 151 :L 1e9gA 119 :I T0287 152 :LKLFV 1e9gA 140 :LGIMA T0287 159 :DEEV 1e9gA 147 :DEGE T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1e9gA 163 :PLAPKLNDIEDVEKYFPGLLRATN T0287 187 :L 1e9gA 189 :F T0287 191 :MKEKGVQ 1e9gA 193 :KIPDGKP Number of specific fragments extracted= 14 number of extra gaps= 5 total=2797 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_536931434.pdb -s /var/tmp/to_scwrl_536931434.seq -o /var/tmp/from_scwrl_536931434.pdb > /var/tmp/scwrl_536931434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536931434.pdb Number of alignments=304 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 14 :DSKDK 1e9gA 37 :DKENN T0287 56 :TN 1e9gA 53 :TN T0287 58 :KG 1e9gA 74 :KG T0287 79 :IGVDKF 1e9gA 84 :FPHHGY T0287 105 :NPNFLFSKF 1e9gA 102 :DPNVSHPET T0287 114 :DR 1e9gA 115 :DN T0287 118 :LGIF 1e9gA 119 :IDVL T0287 124 :FFSKP 1e9gA 125 :GETIA T0287 130 :MFKMSIREM 1e9gA 134 :VKQVKALGI T0287 142 :IE 1e9gA 143 :MA T0287 146 :GTNLPLLKLFVM 1e9gA 147 :DEGETDWKVIAI T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 159 :DINDPLAPKLNDIEDVEKYFPGLLRA T0287 187 :LEKYM 1e9gA 185 :TNEWF T0287 195 :GVQNA 1e9gA 193 :KIPDG Number of specific fragments extracted= 15 number of extra gaps= 5 total=2812 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1102804314.pdb -s /var/tmp/to_scwrl_1102804314.seq -o /var/tmp/from_scwrl_1102804314.pdb > /var/tmp/scwrl_1102804314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102804314.pdb Number of alignments=305 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t06-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2813 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1018970197.pdb -s /var/tmp/to_scwrl_1018970197.seq -o /var/tmp/from_scwrl_1018970197.pdb > /var/tmp/scwrl_1018970197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1018970197.pdb Number of alignments=306 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALD 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=2814 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1234553568.pdb -s /var/tmp/to_scwrl_1234553568.seq -o /var/tmp/from_scwrl_1234553568.pdb > /var/tmp/scwrl_1234553568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1234553568.pdb Number of alignments=307 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2815 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_374577361.pdb -s /var/tmp/to_scwrl_374577361.seq -o /var/tmp/from_scwrl_374577361.pdb > /var/tmp/scwrl_374577361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_374577361.pdb Number of alignments=308 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2816 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_64612364.pdb -s /var/tmp/to_scwrl_64612364.seq -o /var/tmp/from_scwrl_64612364.pdb > /var/tmp/scwrl_64612364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64612364.pdb Number of alignments=309 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t2k-global-adpstyle1.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)L22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)Q43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)V75 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L98 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)L99 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKLFSMIA 1e9gA 39 :ENNIFNMVVEIP T0287 16 :KDKKE 1e9gA 53 :TNAKL T0287 23 :IESLQENELLNTDEKKKI 1e9gA 60 :TKEETLNPIIQDTKKGKL T0287 41 :I 1e9gA 90 :I T0287 44 :IKTMHDFFKQMHTNKGALDKVLRN 1e9gA 93 :YGAFPQTWEDPNVSHPETKAVGDN T0287 70 :KDYR 1e9gA 119 :IDVL T0287 76 :IKSIGVDKFKKVYRLL 1e9gA 125 :GETIAYTGQVKQVKAL T0287 94 :ETME 1e9gA 141 :GIMA T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQI 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWF T0287 146 :G 1e9gA 193 :K T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 195 :PDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAG T0287 189 :KYMKEKGVQNA 1e9gA 233 :KSSDSKGIDLT Number of specific fragments extracted= 13 number of extra gaps= 7 total=2829 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1586894098.pdb -s /var/tmp/to_scwrl_1586894098.seq -o /var/tmp/from_scwrl_1586894098.pdb > /var/tmp/scwrl_1586894098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1586894098.pdb Number of alignments=310 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-global-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)K21 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)K21 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKLFSMIADSK 1e9gA 1 :TYTTRQIGAKNTLEYK T0287 19 :KEKLIES 1e9gA 22 :DGKPVSA T0287 29 :NELL 1e9gA 31 :DIPL T0287 35 :DEKKKIIDQIKTMH 1e9gA 37 :DKENNIFNMVVEIP T0287 51 :F 1e9gA 53 :T T0287 52 :KQ 1e9gA 56 :KL T0287 54 :MHTNKGALDKVL 1e9gA 70 :QDTKKGKLRFVR T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKF 1e9gA 93 :YGAFPQTWEDPNV T0287 95 :TMELLHAIAEN 1e9gA 106 :SHPETKAVGDN T0287 108 :FLFS 1e9gA 119 :IDVL T0287 114 :DRSIL 1e9gA 125 :GETIA T0287 119 :GIFLPFFSKPIMF 1e9gA 132 :GQVKQVKALGIMA T0287 134 :SIREMDSQIELYGTNLPLL 1e9gA 147 :DEGETDWKVIAIDINDPLA T0287 153 :KLFVMTDEEVNFYANLKTIEQYN 1e9gA 167 :KLNDIEDVEKYFPGLLRATNEWF T0287 189 :KYMKEK 1e9gA 193 :KIPDGK Number of specific fragments extracted= 16 number of extra gaps= 9 total=2845 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_84273180.pdb -s /var/tmp/to_scwrl_84273180.seq -o /var/tmp/from_scwrl_84273180.pdb > /var/tmp/scwrl_84273180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_84273180.pdb Number of alignments=311 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 11 :M 1e9gA 34 :L T0287 14 :DSKD 1e9gA 37 :DKEN T0287 56 :TNKG 1e9gA 72 :TKKG T0287 105 :NPNFLFSKFDRS 1e9gA 76 :KLRFVRNCFPHH T0287 118 :LGIFLPFFSKPIMFK 1e9gA 93 :YGAFPQTWEDPNVSH T0287 136 :R 1e9gA 108 :P T0287 141 :QIELYGTN 1e9gA 109 :ETKAVGDN T0287 151 :L 1e9gA 119 :I T0287 152 :LKLFV 1e9gA 140 :LGIMA T0287 159 :DEEV 1e9gA 147 :DEGE T0287 163 :NFYANLKTIEQYNDYVRDLLMKFD 1e9gA 163 :PLAPKLNDIEDVEKYFPGLLRATN T0287 187 :L 1e9gA 189 :F T0287 191 :MKEKGVQ 1e9gA 193 :KIPDGKP Number of specific fragments extracted= 14 number of extra gaps= 5 total=2859 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_451649449.pdb -s /var/tmp/to_scwrl_451649449.seq -o /var/tmp/from_scwrl_451649449.pdb > /var/tmp/scwrl_451649449.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_451649449.pdb Number of alignments=312 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)K192 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 14 :DSKDK 1e9gA 37 :DKENN T0287 56 :TN 1e9gA 53 :TN T0287 58 :KG 1e9gA 74 :KG T0287 79 :IGVDKF 1e9gA 84 :FPHHGY T0287 105 :NPNFLFSKF 1e9gA 102 :DPNVSHPET T0287 114 :DR 1e9gA 115 :DN T0287 118 :LGIF 1e9gA 119 :IDVL T0287 124 :FFSKP 1e9gA 125 :GETIA T0287 130 :MFKMSIREM 1e9gA 134 :VKQVKALGI T0287 142 :IE 1e9gA 143 :MA T0287 146 :GTNLPLLKLFVM 1e9gA 147 :DEGETDWKVIAI T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1e9gA 159 :DINDPLAPKLNDIEDVEKYFPGLLRA T0287 187 :LEKYM 1e9gA 185 :TNEWF T0287 195 :GVQNA 1e9gA 193 :KIPDG Number of specific fragments extracted= 15 number of extra gaps= 5 total=2874 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1592412537.pdb -s /var/tmp/to_scwrl_1592412537.seq -o /var/tmp/from_scwrl_1592412537.pdb > /var/tmp/scwrl_1592412537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1592412537.pdb Number of alignments=313 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-adpstyle1.a2m # 1e9gA read from T0287-1e9gA-t2k-local-adpstyle1.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2875 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_985193703.pdb -s /var/tmp/to_scwrl_985193703.seq -o /var/tmp/from_scwrl_985193703.pdb > /var/tmp/scwrl_985193703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_985193703.pdb Number of alignments=314 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-local-adpstyle5.a2m # found chain 1e9gA in training set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALD 1e9gA 209 :AKNKKYALDIIKETHDSWKQLIAGKSSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=2876 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_477885251.pdb -s /var/tmp/to_scwrl_477885251.seq -o /var/tmp/from_scwrl_477885251.pdb > /var/tmp/scwrl_477885251.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_477885251.pdb Number of alignments=315 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1e9gA in training set T0287 36 :EKKKIIDQIKTMHDFFKQMHTNK 1e9gA 211 :NKKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2877 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_817209453.pdb -s /var/tmp/to_scwrl_817209453.seq -o /var/tmp/from_scwrl_817209453.pdb > /var/tmp/scwrl_817209453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_817209453.pdb Number of alignments=316 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1e9gA read from T0287-1e9gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1e9gA in training set T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1e9gA 212 :KKYALDIIKETHDSWKQLIAGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2878 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_34863413.pdb -s /var/tmp/to_scwrl_34863413.seq -o /var/tmp/from_scwrl_34863413.pdb > /var/tmp/scwrl_34863413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34863413.pdb Number of alignments=317 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e9gA-t04-muscle.a2m.gz # 1e9gA read from T0287-1e9gA-t04-muscle.a2m.gz # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :M 1e9gA 1 :T T0287 2 :SNNMRKL 1e9gA 22 :DGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQ 1e9gA 37 :DKENNIFNMVV T0287 30 :ELL 1e9gA 48 :EIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVL 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNC T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKFKKVYR 1e9gA 93 :YGAFPQTWEDPNVSHPET T0287 90 :LLES 1e9gA 113 :VGDN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFSKFDRSILGIFL 1e9gA 125 :GETIAYTGQVKQVKALGIMA T0287 125 :FSKPIMFKMSIREMDSQIELYGTNLPLLKLF 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKY T0287 156 :VMTDEEVNFY 1e9gA 180 :GLLRATNEWF T0287 169 :KTIEQ 1e9gA 193 :KIPDG T0287 174 :YNDYVRDLLMK 1e9gA 211 :NKKYALDIIKE T0287 186 :DLEKYMKEKGVQNA 1e9gA 222 :THDSWKQLIAGKSS Number of specific fragments extracted= 17 number of extra gaps= 9 total=2895 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_986333112.pdb -s /var/tmp/to_scwrl_986333112.seq -o /var/tmp/from_scwrl_986333112.pdb > /var/tmp/scwrl_986333112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986333112.pdb Number of alignments=318 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e9gA-t06-muscle.a2m.gz # 1e9gA read from T0287-1e9gA-t06-muscle.a2m.gz # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQ 1e9gA 37 :DKENNIFNMVV T0287 30 :ELL 1e9gA 48 :EIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRN 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNCFP T0287 68 :YM 1e9gA 89 :YI T0287 72 :YRAVIKSIGVDKFKKVYRLL 1e9gA 93 :YGAFPQTWEDPNVSHPETKA T0287 92 :ES 1e9gA 115 :DN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFSKFDRSILGIFL 1e9gA 125 :GETIAYTGQVKQVKALGIMA T0287 125 :FSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 1e9gA 147 :DEGETDWKVIAIDINDPLAPKLNDIEDVEKYF T0287 157 :MTDEEVNFY 1e9gA 181 :LLRATNEWF T0287 169 :KTIEQ 1e9gA 193 :KIPDG T0287 174 :YNDYVRDL 1e9gA 209 :AKNKKYAL T0287 182 :LMKFDLEKYMKEKGVQNA 1e9gA 218 :IIKETHDSWKQLIAGKSS Number of specific fragments extracted= 16 number of extra gaps= 9 total=2911 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1148655682.pdb -s /var/tmp/to_scwrl_1148655682.seq -o /var/tmp/from_scwrl_1148655682.pdb > /var/tmp/scwrl_1148655682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1148655682.pdb Number of alignments=319 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1e9gA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1e9gA-t2k-muscle.a2m.gz # 1e9gA read from T0287-1e9gA-t2k-muscle.a2m.gz # found chain 1e9gA in training set Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)H30 Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)H30 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)A36 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)A36 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)W52 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)W52 Warning: unaligning (T0287)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)I59 Warning: unaligning (T0287)I41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)I59 Warning: unaligning (T0287)K70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1e9gA)N92 Warning: unaligning (T0287)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1e9gA)N92 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)P118 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)P118 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I124 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I124 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)L146 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)L146 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1e9gA)I191 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)I191 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (1e9gA)Y192 T0287 1 :MSNNMRKL 1e9gA 21 :KDGKPVSA T0287 11 :MIAD 1e9gA 31 :DIPL T0287 17 :DKKEKLIESLQ 1e9gA 37 :DKENNIFNMVV T0287 30 :ELL 1e9gA 48 :EIP T0287 35 :DEKKK 1e9gA 53 :TNAKL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVL 1e9gA 60 :TKEETLNPIIQDTKKGKLRFVRNC T0287 66 :RNYM 1e9gA 87 :HGYI T0287 72 :YRAVIKSIGVDKFKKVYRLL 1e9gA 93 :YGAFPQTWEDPNVSHPETKA T0287 92 :ES 1e9gA 115 :DN T0287 96 :MELL 1e9gA 119 :IDVL T0287 103 :AENPNFLFSKFDRSILGIFL 1e9gA 125 :GETIAYTGQVKQVKALGIMA T0287 125 :FSKPIMFK 1e9gA 147 :DEGETDWK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1e9gA 156 :IAIDINDPLAPKLNDIEDVEKYF T0287 156 :VMTDEEVNFY 1e9gA 180 :GLLRATNEWF T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1e9gA 193 :KIPDGKPENQFAFSGEAKNKKYALDIIKETH Number of specific fragments extracted= 15 number of extra gaps= 9 total=2926 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1315722030.pdb -s /var/tmp/to_scwrl_1315722030.seq -o /var/tmp/from_scwrl_1315722030.pdb > /var/tmp/scwrl_1315722030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1315722030.pdb Number of alignments=320 # command:# Prefix for input files set to 1f7lA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-fssp-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-fssp-global-adpstyle5.a2m # found chain 1f7lA in training set T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2930 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_465337590.pdb -s /var/tmp/to_scwrl_465337590.seq -o /var/tmp/from_scwrl_465337590.pdb > /var/tmp/scwrl_465337590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_465337590.pdb Number of alignments=321 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-fssp-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-fssp-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2930 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-global-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t04-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 1 :MSNNM 1f7lA 1 :GIYGI T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR T0287 16 :KDKKEKLIESLQENELLNTDEK 1f7lA 22 :QKRFAERILTRSELDQYYELSE T0287 45 :KTMHDFFKQMHTNKGALDKVLR 1f7lA 44 :KRKNEFLAGRFAAKEAFSKAFG T0287 67 :NYMKDYRAVIKSIGVDKFKKVYR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKF 1f7lA 90 :ICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=2936 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1081348486.pdb -s /var/tmp/to_scwrl_1081348486.seq -o /var/tmp/from_scwrl_1081348486.pdb > /var/tmp/scwrl_1081348486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1081348486.pdb Number of alignments=322 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t04-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 10 :SMIADSKDKKEKLIES 1f7lA 13 :KRIASMAGRQKRFAER T0287 31 :LLNTDEKKKII 1f7lA 29 :ILTRSELDQYY T0287 46 :TMHDFFKQMHTNKGALDKVLRNY 1f7lA 45 :RKNEFLAGRFAAKEAFSKAFGTG T0287 69 :MKDYRAVIKSIGVDKFKKVYR 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKF 1f7lA 90 :ICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2941 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1899593798.pdb -s /var/tmp/to_scwrl_1899593798.seq -o /var/tmp/from_scwrl_1899593798.pdb > /var/tmp/scwrl_1899593798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899593798.pdb Number of alignments=323 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-local-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t04-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 74 :AVIKSIGVDKFKKVYRL 1f7lA 59 :AFSKAFGTGIGRQLSFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=2942 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t04-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t04-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2942 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-global-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t06-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1f7lA)G1 Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1f7lA 2 :IYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSE T0287 47 :MHDFFKQMHTNKGALDKVLR 1f7lA 46 :KNEFLAGRFAAKEAFSKAFG T0287 67 :NYMKDYRAVIKSIGVDKFKKVYR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYI T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKF 1f7lA 90 :ICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2946 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_595636238.pdb -s /var/tmp/to_scwrl_595636238.seq -o /var/tmp/from_scwrl_595636238.pdb > /var/tmp/scwrl_595636238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_595636238.pdb Number of alignments=324 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t06-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1f7lA)G1 T0287 5 :MRK 1f7lA 2 :IYG T0287 11 :MIADSKDKKEKLIE 1f7lA 11 :ELKRIASMAGRQKR T0287 27 :QENELLNTDEKKKIIDQIK 1f7lA 25 :FAERILTRSELDQYYELSE T0287 46 :TMHDFFKQMHTNKGALDKVLRNY 1f7lA 45 :RKNEFLAGRFAAKEAFSKAFGTG T0287 69 :MKDYRAVIKSIGVDKFKKVYR 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYI T0287 181 :LLMKFDLE 1f7lA 90 :ICTKLSPA Number of specific fragments extracted= 6 number of extra gaps= 0 total=2952 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_104055650.pdb -s /var/tmp/to_scwrl_104055650.seq -o /var/tmp/from_scwrl_104055650.pdb > /var/tmp/scwrl_104055650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104055650.pdb Number of alignments=325 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-local-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t06-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 76 :IKSIGVD 1f7lA 2 :IYGIGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2953 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t06-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t06-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2953 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-global-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t2k-global-adpstyle1.a2m # found chain 1f7lA in training set T0287 1 :MSNNMRKLFSMIADSKDKKEK 1f7lA 1 :GIYGIGLDITELKRIASMAGR T0287 24 :ESLQENELLNTDEKKKIIDQ 1f7lA 22 :QKRFAERILTRSELDQYYEL T0287 45 :KT 1f7lA 42 :SE T0287 47 :MHDFFKQMHTNKGALDKVLRNYMK 1f7lA 46 :KNEFLAGRFAAKEAFSKAFGTGIG T0287 71 :DYRAVIKSIGVDKFKKVYRLLES 1f7lA 71 :QLSFQDIEIRKDQNGKPYIICTK T0287 181 :LLMKFDLEKYMKEKGVQNA 1f7lA 94 :LSPAAVHVSITHTKEYAAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=2959 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_236352799.pdb -s /var/tmp/to_scwrl_236352799.seq -o /var/tmp/from_scwrl_236352799.pdb > /var/tmp/scwrl_236352799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236352799.pdb Number of alignments=326 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-global-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t2k-global-adpstyle5.a2m # found chain 1f7lA in training set T0287 1 :MSNNMRKLFSMIADSKDKKEK 1f7lA 1 :GIYGIGLDITELKRIASMAGR T0287 24 :ESLQENELLNTDEKKKIIDQ 1f7lA 22 :QKRFAERILTRSELDQYYEL T0287 45 :K 1f7lA 42 :S T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMK 1f7lA 45 :RKNEFLAGRFAAKEAFSKAFGTGIG T0287 72 :YRAVIKSIGVDKFK 1f7lA 70 :RQLSFQDIEIRKDQ T0287 86 :KVYRLLES 1f7lA 86 :KPYIICTK T0287 181 :LLMKFDLEKYMKEKGVQNA 1f7lA 94 :LSPAAVHVSITHTKEYAAA Number of specific fragments extracted= 7 number of extra gaps= 0 total=2966 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1059183832.pdb -s /var/tmp/to_scwrl_1059183832.seq -o /var/tmp/from_scwrl_1059183832.pdb > /var/tmp/scwrl_1059183832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1059183832.pdb Number of alignments=327 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-local-adpstyle1.a2m # 1f7lA read from 1f7lA-T0287-t2k-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 76 :IKSIGVD 1f7lA 2 :IYGIGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2967 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f7lA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1f7lA-T0287-t2k-local-adpstyle5.a2m # 1f7lA read from 1f7lA-T0287-t2k-local-adpstyle5.a2m # found chain 1f7lA in training set T0287 30 :ELLNTDEKKKIIDQ 1f7lA 28 :RILTRSELDQYYEL T0287 45 :KT 1f7lA 42 :SE T0287 47 :MHDFFKQMHTNKGALDKVLRNYMK 1f7lA 46 :KNEFLAGRFAAKEAFSKAFGTGIG T0287 72 :YRAVIKSIGVDKFKK 1f7lA 70 :RQLSFQDIEIRKDQN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2971 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2095823383.pdb -s /var/tmp/to_scwrl_2095823383.seq -o /var/tmp/from_scwrl_2095823383.pdb > /var/tmp/scwrl_2095823383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2095823383.pdb Number of alignments=328 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-simplesw-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-simplesw-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2972 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1898398155.pdb -s /var/tmp/to_scwrl_1898398155.seq -o /var/tmp/from_scwrl_1898398155.pdb > /var/tmp/scwrl_1898398155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1898398155.pdb Number of alignments=329 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-simplesw-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-simplesw-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2972 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t04-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)E137 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 9 :ITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2976 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1055821958.pdb -s /var/tmp/to_scwrl_1055821958.seq -o /var/tmp/from_scwrl_1055821958.pdb > /var/tmp/scwrl_1055821958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1055821958.pdb Number of alignments=330 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)Q173 because last residue in template chain is (1f7lA)R118 T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFL 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSI T0287 159 :DEEVNFYANLKTIE 1f7lA 104 :THTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2981 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_198338270.pdb -s /var/tmp/to_scwrl_198338270.seq -o /var/tmp/from_scwrl_198338270.pdb > /var/tmp/scwrl_198338270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198338270.pdb Number of alignments=331 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :MSN 1f7lA 1 :GIY T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2985 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2087924334.pdb -s /var/tmp/to_scwrl_2087924334.seq -o /var/tmp/from_scwrl_2087924334.pdb > /var/tmp/scwrl_2087924334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087924334.pdb Number of alignments=332 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=2992 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_22905133.pdb -s /var/tmp/to_scwrl_22905133.seq -o /var/tmp/from_scwrl_22905133.pdb > /var/tmp/scwrl_22905133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22905133.pdb Number of alignments=333 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t04-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2993 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_164211839.pdb -s /var/tmp/to_scwrl_164211839.seq -o /var/tmp/from_scwrl_164211839.pdb > /var/tmp/scwrl_164211839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_164211839.pdb Number of alignments=334 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2993 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2996 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_477372121.pdb -s /var/tmp/to_scwrl_477372121.seq -o /var/tmp/from_scwrl_477372121.pdb > /var/tmp/scwrl_477372121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_477372121.pdb Number of alignments=335 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3002 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1125709448.pdb -s /var/tmp/to_scwrl_1125709448.seq -o /var/tmp/from_scwrl_1125709448.pdb > /var/tmp/scwrl_1125709448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1125709448.pdb Number of alignments=336 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t06-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)E137 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 9 :ITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3006 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1183182035.pdb -s /var/tmp/to_scwrl_1183182035.seq -o /var/tmp/from_scwrl_1183182035.pdb > /var/tmp/scwrl_1183182035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1183182035.pdb Number of alignments=337 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)Q173 because last residue in template chain is (1f7lA)R118 T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFL 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSI T0287 159 :DEEVNFYANLKTIE 1f7lA 104 :THTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=3011 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1711925690.pdb -s /var/tmp/to_scwrl_1711925690.seq -o /var/tmp/from_scwrl_1711925690.pdb > /var/tmp/scwrl_1711925690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1711925690.pdb Number of alignments=338 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :MSN 1f7lA 1 :GIY T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3015 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1500286809.pdb -s /var/tmp/to_scwrl_1500286809.seq -o /var/tmp/from_scwrl_1500286809.pdb > /var/tmp/scwrl_1500286809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500286809.pdb Number of alignments=339 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=3022 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1247794399.pdb -s /var/tmp/to_scwrl_1247794399.seq -o /var/tmp/from_scwrl_1247794399.pdb > /var/tmp/scwrl_1247794399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1247794399.pdb Number of alignments=340 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t06-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3023 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1151336141.pdb -s /var/tmp/to_scwrl_1151336141.seq -o /var/tmp/from_scwrl_1151336141.pdb > /var/tmp/scwrl_1151336141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1151336141.pdb Number of alignments=341 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3023 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=3026 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1584559989.pdb -s /var/tmp/to_scwrl_1584559989.seq -o /var/tmp/from_scwrl_1584559989.pdb > /var/tmp/scwrl_1584559989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1584559989.pdb Number of alignments=342 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3032 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1699443849.pdb -s /var/tmp/to_scwrl_1699443849.seq -o /var/tmp/from_scwrl_1699443849.pdb > /var/tmp/scwrl_1699443849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1699443849.pdb Number of alignments=343 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t2k-global-adpstyle1.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)E137 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 9 :ITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIR 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3036 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_596265032.pdb -s /var/tmp/to_scwrl_596265032.seq -o /var/tmp/from_scwrl_596265032.pdb > /var/tmp/scwrl_596265032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_596265032.pdb Number of alignments=344 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-global-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)Q173 because last residue in template chain is (1f7lA)R118 T0287 1 :MS 1f7lA 1 :GI T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 10 :TELKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 48 :HDFFKQMHTNKGALDKVLRN 1f7lA 47 :NEFLAGRFAAKEAFSKAFGT T0287 86 :KVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFL 1f7lA 67 :GIGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSI T0287 159 :DEEVNFYANLKTIE 1f7lA 104 :THTKEYAAAQVVIE Number of specific fragments extracted= 5 number of extra gaps= 0 total=3041 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_422270046.pdb -s /var/tmp/to_scwrl_422270046.seq -o /var/tmp/from_scwrl_422270046.pdb > /var/tmp/scwrl_422270046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422270046.pdb Number of alignments=345 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :MSN 1f7lA 1 :GIY T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3045 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_29845453.pdb -s /var/tmp/to_scwrl_29845453.seq -o /var/tmp/from_scwrl_29845453.pdb > /var/tmp/scwrl_29845453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29845453.pdb Number of alignments=346 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 1 :M 1f7lA 1 :G T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=3052 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1413474484.pdb -s /var/tmp/to_scwrl_1413474484.seq -o /var/tmp/from_scwrl_1413474484.pdb > /var/tmp/scwrl_1413474484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1413474484.pdb Number of alignments=347 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-adpstyle1.a2m # 1f7lA read from T0287-1f7lA-t2k-local-adpstyle1.a2m # found chain 1f7lA in training set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3053 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_457133459.pdb -s /var/tmp/to_scwrl_457133459.seq -o /var/tmp/from_scwrl_457133459.pdb > /var/tmp/scwrl_457133459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457133459.pdb Number of alignments=348 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-local-adpstyle5.a2m # found chain 1f7lA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3053 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKK 1f7lA 12 :LKRIASMAGRQKRFAERILTRSELDQYYELSEKRK T0287 62 :DKVLRNYMKDYRAVIKSIGVDK 1f7lA 47 :NEFLAGRFAAKEAFSKAFGTGI T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1f7lA 69 :GRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHVSITHTKEYAAAQVVIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=3056 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1016178565.pdb -s /var/tmp/to_scwrl_1016178565.seq -o /var/tmp/from_scwrl_1016178565.pdb > /var/tmp/scwrl_1016178565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016178565.pdb Number of alignments=349 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1f7lA read from T0287-1f7lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1f7lA in training set Warning: unaligning (T0287)D159 because last residue in template chain is (1f7lA)R118 T0287 5 :MRKLFSMIADSKDKKEKLI 1f7lA 12 :LKRIASMAGRQKRFAERIL T0287 37 :KKKIIDQIKTM 1f7lA 31 :TRSELDQYYEL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 42 :SEKRKNEFLAGRFAAKEAFSKAFGTG T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYI T0287 134 :SIREMDS 1f7lA 90 :ICTKLSP T0287 141 :QIELYGTNLPLLKLFVMT 1f7lA 100 :HVSITHTKEYAAAQVVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3062 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_414646520.pdb -s /var/tmp/to_scwrl_414646520.seq -o /var/tmp/from_scwrl_414646520.pdb > /var/tmp/scwrl_414646520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414646520.pdb Number of alignments=350 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1f7lA-t04-muscle.a2m.gz # 1f7lA read from T0287-1f7lA-t04-muscle.a2m.gz # found chain 1f7lA in training set T0287 1 :MSNNMR 1f7lA 1 :GIYGIG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKG 1f7lA 7 :LDITELKRIASMAGRQKRFAERILTRSE T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1f7lA 35 :LDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQ T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLK 1f7lA 76 :DIEIRKDQNGKPYIICTKLSPAAVHVSIT T0287 186 :DLEKYMKEKGVQNA 1f7lA 105 :HTKEYAAAQVVIER Number of specific fragments extracted= 5 number of extra gaps= 0 total=3067 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1772855489.pdb -s /var/tmp/to_scwrl_1772855489.seq -o /var/tmp/from_scwrl_1772855489.pdb > /var/tmp/scwrl_1772855489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1772855489.pdb Number of alignments=351 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1f7lA-t06-muscle.a2m.gz # 1f7lA read from T0287-1f7lA-t06-muscle.a2m.gz # found chain 1f7lA in training set T0287 1 :MSNNMR 1f7lA 1 :GIYGIG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKG 1f7lA 7 :LDITELKRIASMAGRQKRFAERILTRSE T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1f7lA 35 :LDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQ T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLK 1f7lA 76 :DIEIRKDQNGKPYIICTKLSPAAVHVSIT T0287 186 :DLEKYMKEKGVQNA 1f7lA 105 :HTKEYAAAQVVIER Number of specific fragments extracted= 5 number of extra gaps= 0 total=3072 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1481516155.pdb -s /var/tmp/to_scwrl_1481516155.seq -o /var/tmp/from_scwrl_1481516155.pdb > /var/tmp/scwrl_1481516155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481516155.pdb Number of alignments=352 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1f7lA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1f7lA-t2k-muscle.a2m.gz # 1f7lA read from T0287-1f7lA-t2k-muscle.a2m.gz # found chain 1f7lA in training set Warning: unaligning (T0287)L8 because first residue in template chain is (1f7lA)G1 Warning: unaligning (T0287)D186 because last residue in template chain is (1f7lA)R118 T0287 9 :FSMIADSKDKKEKLIESLQENE 1f7lA 2 :IYGIGLDITELKRIASMAGRQK T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1f7lA 24 :RFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTG T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGI 1f7lA 68 :IGRQLSFQDIEIRKDQNGKPYIICTKLSPAAVHV T0287 170 :TIEQYNDYVRDLLMKF 1f7lA 102 :SITHTKEYAAAQVVIE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3076 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1495995007.pdb -s /var/tmp/to_scwrl_1495995007.seq -o /var/tmp/from_scwrl_1495995007.pdb > /var/tmp/scwrl_1495995007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495995007.pdb Number of alignments=353 # command:# Prefix for input files set to 1flp/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-global-adpstyle5.a2m # 1flp read from 1flp-T0287-fssp-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M133 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1flp 25 :GPEFFMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKII 1flp 54 :TVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1flp 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1flp 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELL 1flp 100 :GISAGQLEAAFKVLSGFMKSYG T0287 114 :DRSILGIFLPFFSKPIMFK 1flp 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3082 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1524965641.pdb -s /var/tmp/to_scwrl_1524965641.seq -o /var/tmp/from_scwrl_1524965641.pdb > /var/tmp/scwrl_1524965641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1524965641.pdb Number of alignments=354 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-local-adpstyle5.a2m # 1flp read from 1flp-T0287-fssp-local-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M133 because last residue in template chain is (1flp)M142 T0287 21 :KLIESLQ 1flp 45 :GLFSGAA T0287 30 :ELLNTDEKKKII 1flp 54 :TVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1flp 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1flp 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1flp 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 114 :DRSILGIFLPFFSKPIMFK 1flp 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3088 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2077152393.pdb -s /var/tmp/to_scwrl_2077152393.seq -o /var/tmp/from_scwrl_2077152393.pdb > /var/tmp/scwrl_2077152393.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077152393.pdb Number of alignments=355 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-global-adpstyle1.a2m # 1flp read from 1flp-T0287-t2k-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)F121 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1flp 25 :GPEFFMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1flp 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 102 :IAENPNFLFSKFDRSILGI 1flp 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 4 number of extra gaps= 1 total=3092 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1600050657.pdb -s /var/tmp/to_scwrl_1600050657.seq -o /var/tmp/from_scwrl_1600050657.pdb > /var/tmp/scwrl_1600050657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1600050657.pdb Number of alignments=356 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-global-adpstyle5.a2m # 1flp read from 1flp-T0287-t2k-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1flp 25 :GPEFFMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1flp 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSK 1flp 123 :DEGAWTAVAGALMGEIEP Number of specific fragments extracted= 4 number of extra gaps= 1 total=3096 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1761318440.pdb -s /var/tmp/to_scwrl_1761318440.seq -o /var/tmp/from_scwrl_1761318440.pdb > /var/tmp/scwrl_1761318440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1761318440.pdb Number of alignments=357 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-local-adpstyle1.a2m # 1flp read from 1flp-T0287-t2k-local-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADSKDKKEKLIESLQ 1flp 29 :FMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLL 1flp 100 :GISAGQLEAAFKVL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3099 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_988852578.pdb -s /var/tmp/to_scwrl_988852578.seq -o /var/tmp/from_scwrl_988852578.pdb > /var/tmp/scwrl_988852578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_988852578.pdb Number of alignments=358 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-t2k-local-adpstyle5.a2m # 1flp read from 1flp-T0287-t2k-local-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADSKDKKEKLIESLQ 1flp 29 :FMALFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLE 1flp 100 :GISAGQLEAAFKVLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=3102 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1548390393.pdb -s /var/tmp/to_scwrl_1548390393.seq -o /var/tmp/from_scwrl_1548390393.pdb > /var/tmp/scwrl_1548390393.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1548390393.pdb Number of alignments=359 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-simplesw-adpstyle1.a2m # 1flp read from T0287-1flp-simplesw-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3104 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1512232948.pdb -s /var/tmp/to_scwrl_1512232948.seq -o /var/tmp/from_scwrl_1512232948.pdb > /var/tmp/scwrl_1512232948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1512232948.pdb Number of alignments=360 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-simplesw-adpstyle5.a2m # 1flp read from T0287-1flp-simplesw-adpstyle5.a2m # found chain 1flp in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 69 :KGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3106 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2044674535.pdb -s /var/tmp/to_scwrl_2044674535.seq -o /var/tmp/from_scwrl_2044674535.pdb > /var/tmp/scwrl_2044674535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2044674535.pdb Number of alignments=361 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-adpstyle1.a2m # 1flp read from T0287-1flp-t04-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M191 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1flp 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1flp 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1flp 137 :EIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3112 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1746728664.pdb -s /var/tmp/to_scwrl_1746728664.seq -o /var/tmp/from_scwrl_1746728664.pdb > /var/tmp/scwrl_1746728664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1746728664.pdb Number of alignments=362 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-adpstyle5.a2m # 1flp read from T0287-1flp-t04-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1flp 102 :SAGQLEAAFKVLS T0287 112 :KF 1flp 115 :GF T0287 142 :IELYGTNL 1flp 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1flp 125 :GAWTAVAGALMG T0287 186 :DLE 1flp 137 :EIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 1 total=3121 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1452673636.pdb -s /var/tmp/to_scwrl_1452673636.seq -o /var/tmp/from_scwrl_1452673636.pdb > /var/tmp/scwrl_1452673636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452673636.pdb Number of alignments=363 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1flp 28 :FFMALFDAHDDVFA T0287 22 :LIESLQ 1flp 46 :LFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAAN T0287 76 :IKSIGVD 1flp 96 :HKARGIS T0287 83 :KFKKVYRLLES 1flp 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 116 :FMKSYGGDEGAWTAVAGALMGE T0287 195 :GVQNA 1flp 138 :IEPDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3129 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2067579669.pdb -s /var/tmp/to_scwrl_2067579669.seq -o /var/tmp/from_scwrl_2067579669.pdb > /var/tmp/scwrl_2067579669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067579669.pdb Number of alignments=364 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSN 1flp 1 :SLE T0287 4 :NMRKLFSMI 1flp 9 :NVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1flp 19 :AAWGTAGPEFFMALFD T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1flp 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLLM 1flp 121 :GGDEGAWTAVAGALMGEIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3137 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1910940503.pdb -s /var/tmp/to_scwrl_1910940503.seq -o /var/tmp/from_scwrl_1910940503.pdb > /var/tmp/scwrl_1910940503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1910940503.pdb Number of alignments=365 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-adpstyle1.a2m # 1flp read from T0287-1flp-t04-local-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3139 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1930045757.pdb -s /var/tmp/to_scwrl_1930045757.seq -o /var/tmp/from_scwrl_1930045757.pdb > /var/tmp/scwrl_1930045757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1930045757.pdb Number of alignments=366 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-adpstyle5.a2m # 1flp read from T0287-1flp-t04-local-adpstyle5.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3141 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1045805471.pdb -s /var/tmp/to_scwrl_1045805471.seq -o /var/tmp/from_scwrl_1045805471.pdb > /var/tmp/scwrl_1045805471.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1045805471.pdb Number of alignments=367 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 6 :RKLFSMIADSKDKK 1flp 26 :PEFFMALFDAHDDV T0287 20 :EKLIESLQ 1flp 44 :SGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1flp 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 4 number of extra gaps= 1 total=3145 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_946638892.pdb -s /var/tmp/to_scwrl_946638892.seq -o /var/tmp/from_scwrl_946638892.pdb > /var/tmp/scwrl_946638892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946638892.pdb Number of alignments=368 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADS 1flp 25 :GPEFFMALFDA T0287 19 :KEKLIESLQ 1flp 36 :HDDVFAKFS T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1flp 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=3150 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1494487800.pdb -s /var/tmp/to_scwrl_1494487800.seq -o /var/tmp/from_scwrl_1494487800.pdb > /var/tmp/scwrl_1494487800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494487800.pdb Number of alignments=369 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-adpstyle1.a2m # 1flp read from T0287-1flp-t06-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M191 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1flp 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1flp 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1flp 137 :EIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3156 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_398608633.pdb -s /var/tmp/to_scwrl_398608633.seq -o /var/tmp/from_scwrl_398608633.pdb > /var/tmp/scwrl_398608633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_398608633.pdb Number of alignments=370 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-adpstyle5.a2m # 1flp read from T0287-1flp-t06-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1flp 102 :SAGQLEAAFKVLS T0287 112 :KF 1flp 115 :GF T0287 142 :IELYGTNL 1flp 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1flp 125 :GAWTAVAGALMG T0287 186 :DLE 1flp 137 :EIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 1 total=3165 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_46949644.pdb -s /var/tmp/to_scwrl_46949644.seq -o /var/tmp/from_scwrl_46949644.pdb > /var/tmp/scwrl_46949644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46949644.pdb Number of alignments=371 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1flp 28 :FFMALFDAHDDVFA T0287 22 :LIESLQ 1flp 46 :LFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAAN T0287 76 :IKSIGVD 1flp 96 :HKARGIS T0287 83 :KFKKVYRLLES 1flp 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 116 :FMKSYGGDEGAWTAVAGALMGE T0287 195 :GVQNA 1flp 138 :IEPDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3173 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_498340295.pdb -s /var/tmp/to_scwrl_498340295.seq -o /var/tmp/from_scwrl_498340295.pdb > /var/tmp/scwrl_498340295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498340295.pdb Number of alignments=372 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSN 1flp 1 :SLE T0287 4 :NMRKLFSMI 1flp 9 :NVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1flp 19 :AAWGTAGPEFFMALFD T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1flp 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLLM 1flp 121 :GGDEGAWTAVAGALMGEIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3181 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1983168622.pdb -s /var/tmp/to_scwrl_1983168622.seq -o /var/tmp/from_scwrl_1983168622.pdb > /var/tmp/scwrl_1983168622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983168622.pdb Number of alignments=373 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-adpstyle1.a2m # 1flp read from T0287-1flp-t06-local-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3183 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1746393493.pdb -s /var/tmp/to_scwrl_1746393493.seq -o /var/tmp/from_scwrl_1746393493.pdb > /var/tmp/scwrl_1746393493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1746393493.pdb Number of alignments=374 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-adpstyle5.a2m # 1flp read from T0287-1flp-t06-local-adpstyle5.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3185 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1094605326.pdb -s /var/tmp/to_scwrl_1094605326.seq -o /var/tmp/from_scwrl_1094605326.pdb > /var/tmp/scwrl_1094605326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1094605326.pdb Number of alignments=375 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 6 :RKLFSMIADSKDKK 1flp 26 :PEFFMALFDAHDDV T0287 20 :EKLIESLQ 1flp 44 :SGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1flp 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 4 number of extra gaps= 1 total=3189 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_257955021.pdb -s /var/tmp/to_scwrl_257955021.seq -o /var/tmp/from_scwrl_257955021.pdb > /var/tmp/scwrl_257955021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_257955021.pdb Number of alignments=376 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADS 1flp 25 :GPEFFMALFDA T0287 19 :KEKLIESLQ 1flp 36 :HDDVFAKFS T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1flp 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=3194 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1776238947.pdb -s /var/tmp/to_scwrl_1776238947.seq -o /var/tmp/from_scwrl_1776238947.pdb > /var/tmp/scwrl_1776238947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776238947.pdb Number of alignments=377 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-adpstyle1.a2m # 1flp read from T0287-1flp-t2k-global-adpstyle1.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)M191 because last residue in template chain is (1flp)M142 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1flp 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1flp 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1flp 137 :EIEPD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3200 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_360596164.pdb -s /var/tmp/to_scwrl_360596164.seq -o /var/tmp/from_scwrl_360596164.pdb > /var/tmp/scwrl_360596164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_360596164.pdb Number of alignments=378 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-global-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQ 1flp 32 :LFDAHDDVFAKFSGLFSGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1flp 102 :SAGQLEAAFKVLS T0287 112 :KF 1flp 115 :GF T0287 142 :IELYGTNL 1flp 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1flp 125 :GAWTAVAGALMG T0287 186 :DLE 1flp 137 :EIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 9 number of extra gaps= 1 total=3209 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_715088481.pdb -s /var/tmp/to_scwrl_715088481.seq -o /var/tmp/from_scwrl_715088481.pdb > /var/tmp/scwrl_715088481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715088481.pdb Number of alignments=379 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSNNMRK 1flp 1 :SLEAAQK T0287 8 :LFSMIADSKDK 1flp 28 :FFMALFDAHDD T0287 22 :LIESL 1flp 39 :VFAKF T0287 27 :Q 1flp 51 :A T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAAN T0287 76 :IKSIGVD 1flp 96 :HKARGIS T0287 83 :KFKKVYRLLES 1flp 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1flp 138 :I T0287 196 :VQNA 1flp 139 :EPDM Number of specific fragments extracted= 10 number of extra gaps= 1 total=3219 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_644933865.pdb -s /var/tmp/to_scwrl_644933865.seq -o /var/tmp/from_scwrl_644933865.pdb > /var/tmp/scwrl_644933865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_644933865.pdb Number of alignments=380 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 1 :MSN 1flp 1 :SLE T0287 4 :NMRKLFSMI 1flp 9 :NVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1flp 19 :AAWGTAGPEFFMALFD T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1flp 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLLM 1flp 121 :GGDEGAWTAVAGALMGEIE T0287 197 :QNA 1flp 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=3227 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_775242685.pdb -s /var/tmp/to_scwrl_775242685.seq -o /var/tmp/from_scwrl_775242685.pdb > /var/tmp/scwrl_775242685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_775242685.pdb Number of alignments=381 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-adpstyle1.a2m # 1flp read from T0287-1flp-t2k-local-adpstyle1.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1flp 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3229 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_340460323.pdb -s /var/tmp/to_scwrl_340460323.seq -o /var/tmp/from_scwrl_340460323.pdb > /var/tmp/scwrl_340460323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_340460323.pdb Number of alignments=382 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-local-adpstyle5.a2m # found chain 1flp in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1flp 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1flp 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3231 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2126450020.pdb -s /var/tmp/to_scwrl_2126450020.seq -o /var/tmp/from_scwrl_2126450020.pdb > /var/tmp/scwrl_2126450020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2126450020.pdb Number of alignments=383 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 24 :ESLQ 1flp 48 :SGAA T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1flp 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 3 number of extra gaps= 1 total=3234 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_123754045.pdb -s /var/tmp/to_scwrl_123754045.seq -o /var/tmp/from_scwrl_123754045.pdb > /var/tmp/scwrl_123754045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_123754045.pdb Number of alignments=384 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1flp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1flp read from T0287-1flp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1flp in template set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 T0287 5 :MRKLFSMIADS 1flp 25 :GPEFFMALFDA T0287 19 :KEKLIESLQ 1flp 36 :HDDVFAKFS T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1flp 54 :TVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1flp 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1flp 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=3239 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1865425964.pdb -s /var/tmp/to_scwrl_1865425964.seq -o /var/tmp/from_scwrl_1865425964.pdb > /var/tmp/scwrl_1865425964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865425964.pdb Number of alignments=385 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1flp-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1flp-t2k-muscle.a2m.gz # 1flp read from T0287-1flp-t2k-muscle.a2m.gz # found chain 1flp in template set Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE in next template residue (1flp)G53 Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE at template residue (1flp)G53 Warning: unaligning (T0287)K194 because last residue in template chain is (1flp)M142 T0287 1 :MSN 1flp 2 :LEA T0287 42 :DQIKTMHDFFKQMHTNKGALD 1flp 5 :AQKSNVTSSWAKASAAWGTAG T0287 63 :KVLRNYMKDYRAVIK 1flp 27 :EFFMALFDAHDDVFA T0287 83 :KFKKVYRLLE 1flp 42 :KFSGLFSGAA T0287 95 :TMELLHAIAENPNFLFSKFDR 1flp 54 :TVKNTPEMAAQAQSFKGLVSN T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1flp 75 :WVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKV T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1flp 113 :LSGFMKSYGGDEGAWTAVAGAL T0287 187 :LEKYMKE 1flp 135 :MGEIEPD Number of specific fragments extracted= 8 number of extra gaps= 1 total=3247 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2056118766.pdb -s /var/tmp/to_scwrl_2056118766.seq -o /var/tmp/from_scwrl_2056118766.pdb > /var/tmp/scwrl_2056118766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2056118766.pdb Number of alignments=386 # command:# Prefix for input files set to 1fzcA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-fssp-global-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-fssp-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)L181 because last residue in template chain is (1fzcA)D192 T0287 9 :FSMIADSKDKKEKLIESLQE 1fzcA 122 :LKRKVIEKVQHIQLLQKNVR T0287 36 :EKKKIIDQIKTMHDFFKQ 1fzcA 142 :AQLVDMKRLEVDIDIKIR T0287 94 :ETMELL 1fzcA 160 :SCRGSC T0287 107 :NFLF 1fzcA 167 :RALA T0287 163 :NFYANLKTIEQYNDYVRD 1fzcA 174 :DLKDYEDQQKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3252 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1723804702.pdb -s /var/tmp/to_scwrl_1723804702.seq -o /var/tmp/from_scwrl_1723804702.pdb > /var/tmp/scwrl_1723804702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1723804702.pdb Number of alignments=387 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-fssp-local-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-fssp-local-adpstyle5.a2m # found chain 1fzcA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3252 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-global-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t04-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)E94 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 73 :RAVIKSIGVDKFKKVYRLLES 1fzcA 171 :REVDLKDYEDQQKQLEQVIAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3254 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1479260757.pdb -s /var/tmp/to_scwrl_1479260757.seq -o /var/tmp/from_scwrl_1479260757.pdb > /var/tmp/scwrl_1479260757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1479260757.pdb Number of alignments=388 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-global-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t04-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 77 :KSIGVDKFKKVYRLLESETM 1fzcA 171 :REVDLKDYEDQQKQLEQVIA Number of specific fragments extracted= 2 number of extra gaps= 0 total=3256 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_897487697.pdb -s /var/tmp/to_scwrl_897487697.seq -o /var/tmp/from_scwrl_897487697.pdb > /var/tmp/scwrl_897487697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897487697.pdb Number of alignments=389 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-local-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t04-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVD 1fzcA 134 :QLLQKNVRAQLVDMKRLEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3257 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1124711448.pdb -s /var/tmp/to_scwrl_1124711448.seq -o /var/tmp/from_scwrl_1124711448.pdb > /var/tmp/scwrl_1124711448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1124711448.pdb Number of alignments=390 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t04-local-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t04-local-adpstyle5.a2m # found chain 1fzcA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3257 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-global-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t2k-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)D82 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 67 :NYMKDYRAVIKSIGV 1fzcA 177 :DYEDQQKQLEQVIAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3259 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_844010060.pdb -s /var/tmp/to_scwrl_844010060.seq -o /var/tmp/from_scwrl_844010060.pdb > /var/tmp/scwrl_844010060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_844010060.pdb Number of alignments=391 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-global-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t2k-global-adpstyle5.a2m # found chain 1fzcA in template set T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA T0287 77 :KSIGVDKFKKVYRLLES 1fzcA 171 :REVDLKDYEDQQKQLEQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=3261 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_794678586.pdb -s /var/tmp/to_scwrl_794678586.seq -o /var/tmp/from_scwrl_794678586.pdb > /var/tmp/scwrl_794678586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794678586.pdb Number of alignments=392 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-local-adpstyle1.a2m # 1fzcA read from 1fzcA-T0287-t2k-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVD 1fzcA 134 :QLLQKNVRAQLVDMKRLEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3262 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_723956466.pdb -s /var/tmp/to_scwrl_723956466.seq -o /var/tmp/from_scwrl_723956466.pdb > /var/tmp/scwrl_723956466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_723956466.pdb Number of alignments=393 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fzcA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1fzcA-T0287-t2k-local-adpstyle5.a2m # 1fzcA read from 1fzcA-T0287-t2k-local-adpstyle5.a2m # found chain 1fzcA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3262 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-simplesw-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-simplesw-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3263 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_149200049.pdb -s /var/tmp/to_scwrl_149200049.seq -o /var/tmp/from_scwrl_149200049.pdb > /var/tmp/scwrl_149200049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_149200049.pdb Number of alignments=394 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-simplesw-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-simplesw-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3264 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_714774608.pdb -s /var/tmp/to_scwrl_714774608.seq -o /var/tmp/from_scwrl_714774608.pdb > /var/tmp/scwrl_714774608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714774608.pdb Number of alignments=395 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t04-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 166 :ANLKTIEQYNDYVR 1fzcA 170 :AREVDLKDYEDQQK T0287 186 :DLEKYMKE 1fzcA 184 :QLEQVIAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3268 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_487413322.pdb -s /var/tmp/to_scwrl_487413322.seq -o /var/tmp/from_scwrl_487413322.pdb > /var/tmp/scwrl_487413322.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487413322.pdb Number of alignments=396 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR T0287 78 :SIGVD 1fzcA 172 :EVDLK T0287 173 :QYNDY 1fzcA 177 :DYEDQ T0287 184 :KFDLEKYMKE 1fzcA 182 :QKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3273 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2079245806.pdb -s /var/tmp/to_scwrl_2079245806.seq -o /var/tmp/from_scwrl_2079245806.pdb > /var/tmp/scwrl_2079245806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079245806.pdb Number of alignments=397 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 134 :SIREMD 1fzcA 169 :LAREVD T0287 171 :IEQYNDYVRD 1fzcA 175 :LKDYEDQQKQ T0287 187 :LEKYMKE 1fzcA 185 :LEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3278 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1760580078.pdb -s /var/tmp/to_scwrl_1760580078.seq -o /var/tmp/from_scwrl_1760580078.pdb > /var/tmp/scwrl_1760580078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1760580078.pdb Number of alignments=398 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 158 :TDEEV 1fzcA 169 :LAREV T0287 167 :NLKTIEQYNDYV 1fzcA 174 :DLKDYEDQQKQL T0287 188 :EKYMKE 1fzcA 186 :EQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3283 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1434052213.pdb -s /var/tmp/to_scwrl_1434052213.seq -o /var/tmp/from_scwrl_1434052213.pdb > /var/tmp/scwrl_1434052213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1434052213.pdb Number of alignments=399 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t04-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3284 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1426249960.pdb -s /var/tmp/to_scwrl_1426249960.seq -o /var/tmp/from_scwrl_1426249960.pdb > /var/tmp/scwrl_1426249960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1426249960.pdb Number of alignments=400 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-local-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3285 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_11705064.pdb -s /var/tmp/to_scwrl_11705064.seq -o /var/tmp/from_scwrl_11705064.pdb > /var/tmp/scwrl_11705064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_11705064.pdb Number of alignments=401 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 79 :IGVDK 1fzcA 171 :REVDL T0287 89 :RLLESETMELLHAIAE 1fzcA 176 :KDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3288 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1481001858.pdb -s /var/tmp/to_scwrl_1481001858.seq -o /var/tmp/from_scwrl_1481001858.pdb > /var/tmp/scwrl_1481001858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481001858.pdb Number of alignments=402 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKG 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG T0287 63 :KVL 1fzcA 176 :KDY T0287 92 :ESETMELLHAIAE 1fzcA 179 :EDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3291 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1924590255.pdb -s /var/tmp/to_scwrl_1924590255.seq -o /var/tmp/from_scwrl_1924590255.pdb > /var/tmp/scwrl_1924590255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1924590255.pdb Number of alignments=403 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t06-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 166 :ANLKTIEQYNDYVR 1fzcA 170 :AREVDLKDYEDQQK T0287 186 :DLEKYMKE 1fzcA 184 :QLEQVIAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3295 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1994873686.pdb -s /var/tmp/to_scwrl_1994873686.seq -o /var/tmp/from_scwrl_1994873686.pdb > /var/tmp/scwrl_1994873686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994873686.pdb Number of alignments=404 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR T0287 78 :SIGVD 1fzcA 172 :EVDLK T0287 173 :QYNDY 1fzcA 177 :DYEDQ T0287 184 :KFDLEKYMKE 1fzcA 182 :QKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3300 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1079911704.pdb -s /var/tmp/to_scwrl_1079911704.seq -o /var/tmp/from_scwrl_1079911704.pdb > /var/tmp/scwrl_1079911704.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1079911704.pdb Number of alignments=405 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 134 :SIREMD 1fzcA 169 :LAREVD T0287 171 :IEQYNDYVRD 1fzcA 175 :LKDYEDQQKQ T0287 187 :LEKYMKE 1fzcA 185 :LEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3305 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_871711936.pdb -s /var/tmp/to_scwrl_871711936.seq -o /var/tmp/from_scwrl_871711936.pdb > /var/tmp/scwrl_871711936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_871711936.pdb Number of alignments=406 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 158 :TDEEV 1fzcA 169 :LAREV T0287 167 :NLKTIEQYNDYV 1fzcA 174 :DLKDYEDQQKQL T0287 188 :EKYMKE 1fzcA 186 :EQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3310 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_105345061.pdb -s /var/tmp/to_scwrl_105345061.seq -o /var/tmp/from_scwrl_105345061.pdb > /var/tmp/scwrl_105345061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_105345061.pdb Number of alignments=407 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t06-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3311 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_708667005.pdb -s /var/tmp/to_scwrl_708667005.seq -o /var/tmp/from_scwrl_708667005.pdb > /var/tmp/scwrl_708667005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708667005.pdb Number of alignments=408 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-local-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3312 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1232308099.pdb -s /var/tmp/to_scwrl_1232308099.seq -o /var/tmp/from_scwrl_1232308099.pdb > /var/tmp/scwrl_1232308099.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1232308099.pdb Number of alignments=409 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 79 :IGVDK 1fzcA 171 :REVDL T0287 89 :RLLESETMELLHAIAE 1fzcA 176 :KDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3315 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_820433542.pdb -s /var/tmp/to_scwrl_820433542.seq -o /var/tmp/from_scwrl_820433542.pdb > /var/tmp/scwrl_820433542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820433542.pdb Number of alignments=410 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKG 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG T0287 63 :KVL 1fzcA 176 :KDY T0287 92 :ESETMELLHAIAE 1fzcA 179 :EDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3318 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1353600870.pdb -s /var/tmp/to_scwrl_1353600870.seq -o /var/tmp/from_scwrl_1353600870.pdb > /var/tmp/scwrl_1353600870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353600870.pdb Number of alignments=411 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t2k-global-adpstyle1.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 166 :ANLKTIEQYNDYVR 1fzcA 170 :AREVDLKDYEDQQK T0287 186 :DLEKYMKE 1fzcA 184 :QLEQVIAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3322 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2007550784.pdb -s /var/tmp/to_scwrl_2007550784.seq -o /var/tmp/from_scwrl_2007550784.pdb > /var/tmp/scwrl_2007550784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007550784.pdb Number of alignments=412 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-global-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)F9 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 10 :SMI 1fzcA 120 :EVL T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR T0287 78 :SIGVD 1fzcA 172 :EVDLK T0287 173 :QYNDY 1fzcA 177 :DYEDQ T0287 184 :KFDLEKYMKE 1fzcA 182 :QKQLEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3327 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1160893864.pdb -s /var/tmp/to_scwrl_1160893864.seq -o /var/tmp/from_scwrl_1160893864.pdb > /var/tmp/scwrl_1160893864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160893864.pdb Number of alignments=413 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 134 :SIREMD 1fzcA 169 :LAREVD T0287 171 :IEQYNDYVRD 1fzcA 175 :LKDYEDQQKQ T0287 187 :LEKYMKE 1fzcA 185 :LEQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3332 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1332567243.pdb -s /var/tmp/to_scwrl_1332567243.seq -o /var/tmp/from_scwrl_1332567243.pdb > /var/tmp/scwrl_1332567243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332567243.pdb Number of alignments=414 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)K194 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 125 :FSKP 1fzcA 165 :CSRA T0287 158 :TDEEV 1fzcA 169 :LAREV T0287 167 :NLKTIEQYNDYV 1fzcA 174 :DLKDYEDQQKQL T0287 188 :EKYMKE 1fzcA 186 :EQVIAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3337 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2131304829.pdb -s /var/tmp/to_scwrl_2131304829.seq -o /var/tmp/from_scwrl_2131304829.pdb > /var/tmp/scwrl_2131304829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2131304829.pdb Number of alignments=415 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-adpstyle1.a2m # 1fzcA read from T0287-1fzcA-t2k-local-adpstyle1.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3338 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_878836183.pdb -s /var/tmp/to_scwrl_878836183.seq -o /var/tmp/from_scwrl_878836183.pdb > /var/tmp/scwrl_878836183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_878836183.pdb Number of alignments=416 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-local-adpstyle5.a2m # found chain 1fzcA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1fzcA 123 :KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3339 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1241202363.pdb -s /var/tmp/to_scwrl_1241202363.seq -o /var/tmp/from_scwrl_1241202363.pdb > /var/tmp/scwrl_1241202363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1241202363.pdb Number of alignments=417 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 79 :IGVDK 1fzcA 171 :REVDL T0287 89 :RLLESETMELLHAIAE 1fzcA 176 :KDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3342 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1707625884.pdb -s /var/tmp/to_scwrl_1707625884.seq -o /var/tmp/from_scwrl_1707625884.pdb > /var/tmp/scwrl_1707625884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1707625884.pdb Number of alignments=418 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fzcA read from T0287-1fzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fzcA in template set Warning: unaligning (T0287)S15 because first residue in template chain is (1fzcA)I119 Warning: unaligning (T0287)N105 because last residue in template chain is (1fzcA)D192 T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKG 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG T0287 63 :KVL 1fzcA 176 :KDY T0287 92 :ESETMELLHAIAE 1fzcA 179 :EDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3345 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_210613293.pdb -s /var/tmp/to_scwrl_210613293.seq -o /var/tmp/from_scwrl_210613293.pdb > /var/tmp/scwrl_210613293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210613293.pdb Number of alignments=419 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1fzcA-t04-muscle.a2m.gz # 1fzcA read from T0287-1fzcA-t04-muscle.a2m.gz # found chain 1fzcA in template set Warning: unaligning (T0287)N198 because last residue in template chain is (1fzcA)D192 T0287 1 :M 1fzcA 119 :I T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1fzcA 120 :EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL T0287 176 :DYVRDLLMKFDLEKYMKEKGVQ 1fzcA 170 :AREVDLKDYEDQQKQLEQVIAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3348 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2138690060.pdb -s /var/tmp/to_scwrl_2138690060.seq -o /var/tmp/from_scwrl_2138690060.pdb > /var/tmp/scwrl_2138690060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2138690060.pdb Number of alignments=420 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1fzcA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1fzcA-t2k-muscle.a2m.gz # 1fzcA read from T0287-1fzcA-t2k-muscle.a2m.gz # found chain 1fzcA in template set T0287 1 :MSN 1fzcA 119 :IEV T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1fzcA 122 :LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS T0287 134 :SIREMDSQIEL 1fzcA 165 :CSRALAREVDL T0287 172 :EQYNDYVRDL 1fzcA 176 :KDYEDQQKQL T0287 193 :EKGVQNA 1fzcA 186 :EQVIAKD Number of specific fragments extracted= 5 number of extra gaps= 0 total=3353 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_684853687.pdb -s /var/tmp/to_scwrl_684853687.seq -o /var/tmp/from_scwrl_684853687.pdb > /var/tmp/scwrl_684853687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_684853687.pdb Number of alignments=421 # command:# Prefix for input files set to 1g24A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-fssp-global-adpstyle5.a2m # 1g24A read from 1g24A-T0287-fssp-global-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESL 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKY T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNF 1g24A 67 :GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLL T0287 109 :LFSKFD 1g24A 146 :SNGTIN T0287 115 :RSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVR 1g24A 153 :TAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLL T0287 180 :DLLMKFDLEKYMKE 1g24A 227 :DMRLSSDGKQIIIT T0287 194 :KGVQNA 1g24A 245 :GTAINP Number of specific fragments extracted= 6 number of extra gaps= 0 total=3359 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1054623353.pdb -s /var/tmp/to_scwrl_1054623353.seq -o /var/tmp/from_scwrl_1054623353.pdb > /var/tmp/scwrl_1054623353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1054623353.pdb Number of alignments=422 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-fssp-local-adpstyle5.a2m # 1g24A read from 1g24A-T0287-fssp-local-adpstyle5.a2m # found chain 1g24A in template set T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETME 1g24A 70 :KSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPA T0287 98 :LLHAIAENPN 1g24A 162 :FLNKDRLEYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3361 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_785884999.pdb -s /var/tmp/to_scwrl_785884999.seq -o /var/tmp/from_scwrl_785884999.pdb > /var/tmp/scwrl_785884999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_785884999.pdb Number of alignments=423 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t04-global-adpstyle1.a2m # 1g24A read from 1g24A-T0287-t04-global-adpstyle1.a2m # found chain 1g24A in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1g24A)A41 T0287 8 :LFSMIADSKDKKE 1g24A 42 :YSNTYQEFTNIDQ T0287 21 :KLIESLQENEL 1g24A 56 :KAWGNAQYKKY T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKK 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPE T0287 87 :VYRLLESETMEL 1g24A 126 :LFRGDDPAYLGT T0287 99 :LHAIAENPNF 1g24A 139 :FQNTLLNSNG T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMD 1g24A 149 :TINKTAFEKAKAKFLNKDRLEYGYISTS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKT 1g24A 178 :MNVSQFAGRPIITKFKVAKGSKAGYIDPISA T0287 171 :IEQYNDYVRD 1g24A 225 :IDDMRLSSDG T0287 183 :MKFDLEKYMKEKGVQNA 1g24A 235 :KQIIITATMMGTAINPK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3370 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1408810152.pdb -s /var/tmp/to_scwrl_1408810152.seq -o /var/tmp/from_scwrl_1408810152.pdb > /var/tmp/scwrl_1408810152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408810152.pdb Number of alignments=424 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t04-global-adpstyle5.a2m # 1g24A read from 1g24A-T0287-t04-global-adpstyle5.a2m # found chain 1g24A in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1g24A)A41 T0287 8 :LFSMIADSKDKKE 1g24A 42 :YSNTYQEFTNIDQ T0287 21 :KLIESLQENEL 1g24A 56 :KAWGNAQYKKY T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKK 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPE T0287 87 :VYRLLESETMEL 1g24A 126 :LFRGDDPAYLGT T0287 99 :LHAIAENP 1g24A 141 :NTLLNSNG T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMD 1g24A 149 :TINKTAFEKAKAKFLNKDRLEYGYISTS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1g24A 178 :MNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQ T0287 175 :NDYVRDLLM 1g24A 222 :TYHIDDMRL T0287 184 :KFDLEKYMKEKGVQNA 1g24A 236 :QIIITATMMGTAINPK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3379 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1203823401.pdb -s /var/tmp/to_scwrl_1203823401.seq -o /var/tmp/from_scwrl_1203823401.pdb > /var/tmp/scwrl_1203823401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1203823401.pdb Number of alignments=425 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t04-local-adpstyle1.a2m # 1g24A read from 1g24A-T0287-t04-local-adpstyle1.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKK 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPE T0287 87 :VYRLLESETMEL 1g24A 126 :LFRGDDPAYLGT T0287 99 :LHAIAENPNF 1g24A 141 :NTLLNSNGTI T0287 109 :LFSKFDRSILGIFLPFFS 1g24A 154 :AFEKAKAKFLNKDRLEYG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3383 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1500659606.pdb -s /var/tmp/to_scwrl_1500659606.seq -o /var/tmp/from_scwrl_1500659606.pdb > /var/tmp/scwrl_1500659606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500659606.pdb Number of alignments=426 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t04-local-adpstyle5.a2m # 1g24A read from 1g24A-T0287-t04-local-adpstyle5.a2m # found chain 1g24A in template set T0287 33 :NTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFK 1g24A 69 :SKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTP T0287 86 :KVYRLLESETMEL 1g24A 125 :MLFRGDDPAYLGT T0287 99 :LHAIAENPNF 1g24A 141 :NTLLNSNGTI T0287 109 :LFSKFDRSILGI 1g24A 154 :AFEKAKAKFLNK T0287 121 :FLPFFSKPI 1g24A 169 :EYGYISTSL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3388 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1896223475.pdb -s /var/tmp/to_scwrl_1896223475.seq -o /var/tmp/from_scwrl_1896223475.pdb > /var/tmp/scwrl_1896223475.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1896223475.pdb Number of alignments=427 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t2k-global-adpstyle1.a2m # 1g24A read from 1g24A-T0287-t2k-global-adpstyle1.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESL 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKY T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKK 1g24A 67 :GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPE T0287 87 :VYRLLESETMELLHAIA 1g24A 126 :LFRGDDPAYLGTEFQNT T0287 104 :ENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYN 1g24A 163 :LNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDG T0287 183 :MKFDLEKYMKEKGVQNA 1g24A 235 :KQIIITATMMGTAINPK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3393 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1135585561.pdb -s /var/tmp/to_scwrl_1135585561.seq -o /var/tmp/from_scwrl_1135585561.pdb > /var/tmp/scwrl_1135585561.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1135585561.pdb Number of alignments=428 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t2k-global-adpstyle5.a2m # 1g24A read from 1g24A-T0287-t2k-global-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESL 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKY T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g24A 67 :GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNK T0287 82 :DKFKKVYRLLESETMELLHAIA 1g24A 121 :PENIMLFRGDDPAYLGTEFQNT T0287 104 :ENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1g24A 163 :LNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAK T0287 146 :GTNLPLLKLFVMTDEEVNFYAN 1g24A 197 :GSKAGYIDPISAFAGQLEMLLP T0287 168 :LK 1g24A 221 :ST T0287 170 :TIEQY 1g24A 224 :HIDDM T0287 177 :YVRDLLMKFDLEKYMKEKGVQNA 1g24A 229 :RLSSDGKQIIITATMMGTAINPK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3401 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1113756037.pdb -s /var/tmp/to_scwrl_1113756037.seq -o /var/tmp/from_scwrl_1113756037.pdb > /var/tmp/scwrl_1113756037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113756037.pdb Number of alignments=429 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t2k-local-adpstyle1.a2m # 1g24A read from 1g24A-T0287-t2k-local-adpstyle1.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKK 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPE T0287 87 :VYRLLESETMELLHAIA 1g24A 126 :LFRGDDPAYLGTEFQNT T0287 104 :ENPNFLFSKFDRSILGIFLPFFSKPIMFKMSI 1g24A 163 :LNKDRLEYGYISTSLMNVSQFAGRPIITKFKV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3404 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1182792041.pdb -s /var/tmp/to_scwrl_1182792041.seq -o /var/tmp/from_scwrl_1182792041.pdb > /var/tmp/scwrl_1182792041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182792041.pdb Number of alignments=430 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g24A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g24A-T0287-t2k-local-adpstyle5.a2m # 1g24A read from 1g24A-T0287-t2k-local-adpstyle5.a2m # found chain 1g24A in template set T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1g24A 73 :KEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVEL T0287 75 :VIKSIGVDKFKKVYRLLESETMELLHAIA 1g24A 114 :SFNKMKTPENIMLFRGDDPAYLGTEFQNT T0287 104 :ENPNFLFSKFDRSILGIFLPFFSKPIMFKMSI 1g24A 163 :LNKDRLEYGYISTSLMNVSQFAGRPIITKFKV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3407 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_414351875.pdb -s /var/tmp/to_scwrl_414351875.seq -o /var/tmp/from_scwrl_414351875.pdb > /var/tmp/scwrl_414351875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414351875.pdb Number of alignments=431 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-simplesw-adpstyle1.a2m # 1g24A read from T0287-1g24A-simplesw-adpstyle1.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSI 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3408 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1125461101.pdb -s /var/tmp/to_scwrl_1125461101.seq -o /var/tmp/from_scwrl_1125461101.pdb > /var/tmp/scwrl_1125461101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1125461101.pdb Number of alignments=432 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-simplesw-adpstyle5.a2m # 1g24A read from T0287-1g24A-simplesw-adpstyle5.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIML T0287 101 :AIAENPNFLFSKFDRSIL 1g24A 127 :FRGDDPAYLGTEFQNTLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3410 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_516310253.pdb -s /var/tmp/to_scwrl_516310253.seq -o /var/tmp/from_scwrl_516310253.pdb > /var/tmp/scwrl_516310253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_516310253.pdb Number of alignments=433 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-global-adpstyle1.a2m # 1g24A read from T0287-1g24A-t04-global-adpstyle1.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKYG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLE 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFR T0287 103 :AENPNFLFSKFDRSILG 1g24A 129 :GDDPAYLGTEFQNTLLN T0287 120 :IFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKY 1g24A 158 :AKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDM T0287 191 :MKEKGVQNA 1g24A 243 :MMGTAINPK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3415 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_191458483.pdb -s /var/tmp/to_scwrl_191458483.seq -o /var/tmp/from_scwrl_191458483.pdb > /var/tmp/scwrl_191458483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_191458483.pdb Number of alignments=434 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-global-adpstyle5.a2m # 1g24A read from T0287-1g24A-t04-global-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKL 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQ T0287 27 :QENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLE 1g24A 63 :YKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFR T0287 103 :AENPNFLFSKFDRSILGIFL 1g24A 129 :GDDPAYLGTEFQNTLLNSNG T0287 124 :FFSKPIMFKMSIREMDSQIELYG 1g24A 149 :TINKTAFEKAKAKFLNKDRLEYG T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTI 1g24A 185 :GRPIITKFKVAKGSKAGYIDPISAF T0287 172 :EQYNDYVRDLLMKFD 1g24A 219 :RHSTYHIDDMRLSSD T0287 187 :LEKYMKEKGVQNA 1g24A 239 :ITATMMGTAINPK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3422 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_972851142.pdb -s /var/tmp/to_scwrl_972851142.seq -o /var/tmp/from_scwrl_972851142.pdb > /var/tmp/scwrl_972851142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972851142.pdb Number of alignments=435 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g24A read from T0287-1g24A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLF 1g24A 41 :AYSNTYQEF T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNK T0287 82 :DKFK 1g24A 137 :TEFQ T0287 89 :RL 1g24A 142 :TL T0287 91 :LESETMELLHAIAENPNFLFSKFDRSIL 1g24A 150 :INKTAFEKAKAKFLNKDRLEYGYISTSL T0287 123 :PFFSKPIMFKMSIREMD 1g24A 182 :QFAGRPIITKFKVAKGS T0287 140 :SQIELYGTNLPLLKLFVMTDE 1g24A 226 :DDMRLSSDGKQIIITATMMGT T0287 195 :GVQNA 1g24A 247 :AINPK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3430 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1596221958.pdb -s /var/tmp/to_scwrl_1596221958.seq -o /var/tmp/from_scwrl_1596221958.pdb > /var/tmp/scwrl_1596221958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1596221958.pdb Number of alignments=436 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g24A read from T0287-1g24A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLF 1g24A 41 :AYSNTYQEF T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVI T0287 66 :RNYMKDYRAVIKSIGV 1g24A 102 :SNLIKQVELLDKSFNK T0287 82 :DK 1g24A 137 :TE T0287 91 :LESETMELLHAIAENPNFLFSKF 1g24A 150 :INKTAFEKAKAKFLNKDRLEYGY T0287 118 :LGIFL 1g24A 173 :ISTSL T0287 123 :PFFSKPIMFKMSIRE 1g24A 182 :QFAGRPIITKFKVAK T0287 140 :SQIELYGTNLPLLKLFVMTD 1g24A 226 :DDMRLSSDGKQIIITATMMG T0287 195 :GVQNA 1g24A 247 :AINPK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3439 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1063170419.pdb -s /var/tmp/to_scwrl_1063170419.seq -o /var/tmp/from_scwrl_1063170419.pdb > /var/tmp/scwrl_1063170419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1063170419.pdb Number of alignments=437 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-local-adpstyle1.a2m # 1g24A read from T0287-1g24A-t04-local-adpstyle1.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSI 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3440 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1078196202.pdb -s /var/tmp/to_scwrl_1078196202.seq -o /var/tmp/from_scwrl_1078196202.pdb > /var/tmp/scwrl_1078196202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078196202.pdb Number of alignments=438 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-local-adpstyle5.a2m # 1g24A read from T0287-1g24A-t04-local-adpstyle5.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLF T0287 102 :IAENPNFLFSKFDRSIL 1g24A 128 :RGDDPAYLGTEFQNTLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3442 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_157405316.pdb -s /var/tmp/to_scwrl_157405316.seq -o /var/tmp/from_scwrl_157405316.pdb > /var/tmp/scwrl_157405316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_157405316.pdb Number of alignments=439 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g24A read from T0287-1g24A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g24A in template set T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3443 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_147994872.pdb -s /var/tmp/to_scwrl_147994872.seq -o /var/tmp/from_scwrl_147994872.pdb > /var/tmp/scwrl_147994872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_147994872.pdb Number of alignments=440 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g24A read from T0287-1g24A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g24A in template set T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGV T0287 81 :VDKF 1g24A 97 :INGF T0287 92 :ESETMELLHAIAENPNFL 1g24A 101 :PSNLIKQVELLDKSFNKM T0287 124 :FFSKPIMF 1g24A 119 :KTPENIML T0287 132 :KMSIREMDSQIE 1g24A 129 :GDDPAYLGTEFQ T0287 144 :LYGTNLPL 1g24A 143 :LLNSNGTI T0287 167 :NLKTIEQYNDYV 1g24A 151 :NKTAFEKAKAKF Number of specific fragments extracted= 7 number of extra gaps= 0 total=3450 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1898629744.pdb -s /var/tmp/to_scwrl_1898629744.seq -o /var/tmp/from_scwrl_1898629744.pdb > /var/tmp/scwrl_1898629744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1898629744.pdb Number of alignments=441 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-global-adpstyle1.a2m # 1g24A read from T0287-1g24A-t06-global-adpstyle1.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKYG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLE 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFR T0287 103 :AENPNFLFSKFDRSILG 1g24A 129 :GDDPAYLGTEFQNTLLN T0287 120 :IFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKY 1g24A 158 :AKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDM T0287 191 :MKEKGVQNA 1g24A 243 :MMGTAINPK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3455 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1511006186.pdb -s /var/tmp/to_scwrl_1511006186.seq -o /var/tmp/from_scwrl_1511006186.pdb > /var/tmp/scwrl_1511006186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1511006186.pdb Number of alignments=442 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-global-adpstyle5.a2m # 1g24A read from T0287-1g24A-t06-global-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKL 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQ T0287 27 :QENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLE 1g24A 63 :YKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFR T0287 103 :AENPNFLFSKFDRSILGIFL 1g24A 129 :GDDPAYLGTEFQNTLLNSNG T0287 124 :FFSKPIMFKMSIREMDSQIELYG 1g24A 149 :TINKTAFEKAKAKFLNKDRLEYG T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTI 1g24A 185 :GRPIITKFKVAKGSKAGYIDPISAF T0287 172 :EQYNDYVRDLLMKFD 1g24A 219 :RHSTYHIDDMRLSSD T0287 187 :LEKYMKEKGVQNA 1g24A 239 :ITATMMGTAINPK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3462 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_8062009.pdb -s /var/tmp/to_scwrl_8062009.seq -o /var/tmp/from_scwrl_8062009.pdb > /var/tmp/scwrl_8062009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_8062009.pdb Number of alignments=443 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g24A read from T0287-1g24A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLF 1g24A 41 :AYSNTYQEF T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNK T0287 82 :DKFK 1g24A 137 :TEFQ T0287 89 :RL 1g24A 142 :TL T0287 91 :LESETMELLHAIAENPNFLFSKFDRSIL 1g24A 150 :INKTAFEKAKAKFLNKDRLEYGYISTSL T0287 123 :PFFSKPIMFKMSIREMD 1g24A 182 :QFAGRPIITKFKVAKGS T0287 140 :SQIELYGTNLPLLKLFVMTDE 1g24A 226 :DDMRLSSDGKQIIITATMMGT T0287 195 :GVQNA 1g24A 247 :AINPK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3470 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_912039962.pdb -s /var/tmp/to_scwrl_912039962.seq -o /var/tmp/from_scwrl_912039962.pdb > /var/tmp/scwrl_912039962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912039962.pdb Number of alignments=444 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g24A read from T0287-1g24A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLF 1g24A 41 :AYSNTYQEF T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVI T0287 66 :RNYMKDYRAVIKSIGV 1g24A 102 :SNLIKQVELLDKSFNK T0287 82 :DK 1g24A 137 :TE T0287 91 :LESETMELLHAIAENPNFLFSKF 1g24A 150 :INKTAFEKAKAKFLNKDRLEYGY T0287 118 :LGIFL 1g24A 173 :ISTSL T0287 123 :PFFSKPIMFKMSIRE 1g24A 182 :QFAGRPIITKFKVAK T0287 140 :SQIELYGTNLPLLKLFVMTD 1g24A 226 :DDMRLSSDGKQIIITATMMG T0287 195 :GVQNA 1g24A 247 :AINPK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3479 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_696089784.pdb -s /var/tmp/to_scwrl_696089784.seq -o /var/tmp/from_scwrl_696089784.pdb > /var/tmp/scwrl_696089784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696089784.pdb Number of alignments=445 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-local-adpstyle1.a2m # 1g24A read from T0287-1g24A-t06-local-adpstyle1.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSI 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3480 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2139366839.pdb -s /var/tmp/to_scwrl_2139366839.seq -o /var/tmp/from_scwrl_2139366839.pdb > /var/tmp/scwrl_2139366839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2139366839.pdb Number of alignments=446 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-local-adpstyle5.a2m # 1g24A read from T0287-1g24A-t06-local-adpstyle5.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLF T0287 102 :IAENPNFLFSKFDRSIL 1g24A 128 :RGDDPAYLGTEFQNTLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3482 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1790876144.pdb -s /var/tmp/to_scwrl_1790876144.seq -o /var/tmp/from_scwrl_1790876144.pdb > /var/tmp/scwrl_1790876144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790876144.pdb Number of alignments=447 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g24A read from T0287-1g24A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g24A in template set T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3483 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1937292147.pdb -s /var/tmp/to_scwrl_1937292147.seq -o /var/tmp/from_scwrl_1937292147.pdb > /var/tmp/scwrl_1937292147.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1937292147.pdb Number of alignments=448 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g24A read from T0287-1g24A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g24A in template set T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGV T0287 81 :VDKF 1g24A 97 :INGF T0287 92 :ESETMELLHAIAENPNFL 1g24A 101 :PSNLIKQVELLDKSFNKM T0287 124 :FFSKPIMF 1g24A 119 :KTPENIML T0287 132 :KMSIREMDSQIE 1g24A 129 :GDDPAYLGTEFQ T0287 144 :LYGTNLPL 1g24A 143 :LLNSNGTI T0287 167 :NLKTIEQYNDYV 1g24A 151 :NKTAFEKAKAKF Number of specific fragments extracted= 7 number of extra gaps= 0 total=3490 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1699509076.pdb -s /var/tmp/to_scwrl_1699509076.seq -o /var/tmp/from_scwrl_1699509076.pdb > /var/tmp/scwrl_1699509076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1699509076.pdb Number of alignments=449 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-global-adpstyle1.a2m # 1g24A read from T0287-1g24A-t2k-global-adpstyle1.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKYG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLE 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFR T0287 103 :AENPNFLFSKFDRSILG 1g24A 129 :GDDPAYLGTEFQNTLLN T0287 120 :IFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKY 1g24A 158 :AKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDM T0287 191 :MKEKGVQNA 1g24A 243 :MMGTAINPK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3495 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2001489438.pdb -s /var/tmp/to_scwrl_2001489438.seq -o /var/tmp/from_scwrl_2001489438.pdb > /var/tmp/scwrl_2001489438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2001489438.pdb Number of alignments=450 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-global-adpstyle5.a2m # 1g24A read from T0287-1g24A-t2k-global-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKL 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQ T0287 27 :QENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLE 1g24A 63 :YKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFR T0287 103 :AENPNFLFSKFDRSILGIFL 1g24A 129 :GDDPAYLGTEFQNTLLNSNG T0287 124 :FFSKPIMFKMSIREMDSQIELYG 1g24A 149 :TINKTAFEKAKAKFLNKDRLEYG T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTI 1g24A 185 :GRPIITKFKVAKGSKAGYIDPISAF T0287 172 :EQYNDYVRDLLMKFD 1g24A 219 :RHSTYHIDDMRLSSD T0287 187 :LEKYMKEKGVQNA 1g24A 239 :ITATMMGTAINPK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3502 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1928498560.pdb -s /var/tmp/to_scwrl_1928498560.seq -o /var/tmp/from_scwrl_1928498560.pdb > /var/tmp/scwrl_1928498560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928498560.pdb Number of alignments=451 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g24A read from T0287-1g24A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLFS 1g24A 41 :AYSNTYQEFT T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g24A 51 :NIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNK T0287 103 :AENPNFLFSKFDRSILG 1g24A 129 :GDDPAYLGTEFQNTLLN T0287 120 :I 1g24A 172 :Y T0287 123 :PFFSKPIMFKMSIREMD 1g24A 182 :QFAGRPIITKFKVAKGS T0287 140 :SQIELYGTNLPLLKLFVMTDE 1g24A 226 :DDMRLSSDGKQIIITATMMGT T0287 195 :GVQNA 1g24A 247 :AINPK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3509 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_236879116.pdb -s /var/tmp/to_scwrl_236879116.seq -o /var/tmp/from_scwrl_236879116.pdb > /var/tmp/scwrl_236879116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236879116.pdb Number of alignments=452 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g24A read from T0287-1g24A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g24A in template set T0287 1 :MSNNMRKLF 1g24A 41 :AYSNTYQEF T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVI T0287 66 :RNYMKDYRAVIKSIGV 1g24A 102 :SNLIKQVELLDKSFNK T0287 82 :DK 1g24A 137 :TE T0287 91 :LESETMELLHAIAENPNFLFSKF 1g24A 150 :INKTAFEKAKAKFLNKDRLEYGY T0287 118 :LGIFL 1g24A 173 :ISTSL T0287 123 :PFFSKPIMFKMSIRE 1g24A 182 :QFAGRPIITKFKVAK T0287 140 :SQIELYGTNLPLLKLFVMTD 1g24A 226 :DDMRLSSDGKQIIITATMMG T0287 195 :GVQNA 1g24A 247 :AINPK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3518 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_908629144.pdb -s /var/tmp/to_scwrl_908629144.seq -o /var/tmp/from_scwrl_908629144.pdb > /var/tmp/scwrl_908629144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_908629144.pdb Number of alignments=453 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-local-adpstyle1.a2m # 1g24A read from T0287-1g24A-t2k-local-adpstyle1.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSI 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3519 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_566899913.pdb -s /var/tmp/to_scwrl_566899913.seq -o /var/tmp/from_scwrl_566899913.pdb > /var/tmp/scwrl_566899913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_566899913.pdb Number of alignments=454 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-local-adpstyle5.a2m # 1g24A read from T0287-1g24A-t2k-local-adpstyle5.a2m # found chain 1g24A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLF T0287 102 :IAENPNFLFSKFDRSIL 1g24A 128 :RGDDPAYLGTEFQNTLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3521 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1645689269.pdb -s /var/tmp/to_scwrl_1645689269.seq -o /var/tmp/from_scwrl_1645689269.pdb > /var/tmp/scwrl_1645689269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1645689269.pdb Number of alignments=455 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g24A read from T0287-1g24A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g24A in template set T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3522 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2112452546.pdb -s /var/tmp/to_scwrl_2112452546.seq -o /var/tmp/from_scwrl_2112452546.pdb > /var/tmp/scwrl_2112452546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2112452546.pdb Number of alignments=456 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g24A read from T0287-1g24A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g24A in template set T0287 14 :DSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA 1g24A 50 :TNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGV T0287 81 :VDKF 1g24A 97 :INGF T0287 92 :ESETMELLHAIAENPNFL 1g24A 101 :PSNLIKQVELLDKSFNKM T0287 124 :FFSKPIMF 1g24A 119 :KTPENIML T0287 132 :KMSIREMDSQIE 1g24A 129 :GDDPAYLGTEFQ T0287 144 :LYGTNLPL 1g24A 143 :LLNSNGTI T0287 167 :NLKTIEQYNDYV 1g24A 151 :NKTAFEKAKAKF Number of specific fragments extracted= 7 number of extra gaps= 0 total=3529 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2067559519.pdb -s /var/tmp/to_scwrl_2067559519.seq -o /var/tmp/from_scwrl_2067559519.pdb > /var/tmp/scwrl_2067559519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067559519.pdb Number of alignments=457 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1g24A-t04-muscle.a2m.gz # 1g24A read from T0287-1g24A-t04-muscle.a2m.gz # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKYG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLG T0287 101 :AIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1g24A 138 :EFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g24A 178 :MNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQI Number of specific fragments extracted= 4 number of extra gaps= 0 total=3533 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1394429097.pdb -s /var/tmp/to_scwrl_1394429097.seq -o /var/tmp/from_scwrl_1394429097.pdb > /var/tmp/scwrl_1394429097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1394429097.pdb Number of alignments=458 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g24A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1g24A-t2k-muscle.a2m.gz # 1g24A read from T0287-1g24A-t2k-muscle.a2m.gz # found chain 1g24A in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1g24A 41 :AYSNTYQEFTNIDQAKAWGNAQYKKYG T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1g24A 68 :LSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSN T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 1g24A 149 :TINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRP T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g24A 189 :ITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQI Number of specific fragments extracted= 4 number of extra gaps= 0 total=3537 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1100554460.pdb -s /var/tmp/to_scwrl_1100554460.seq -o /var/tmp/from_scwrl_1100554460.pdb > /var/tmp/scwrl_1100554460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100554460.pdb Number of alignments=459 # command:# Prefix for input files set to 1g5aA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t04-global-adpstyle1.a2m # 1g5aA read from 1g5aA-T0287-t04-global-adpstyle1.a2m # found chain 1g5aA in training set T0287 1 :MS 1g5aA 142 :KS T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQ 1g5aA 203 :PLFDNFYYIFPDRRMPDQYDRTLRE T0287 28 :ENELLNTDEKKKIIDQ 1g5aA 234 :PGGFSQLEDGRWVWTT T0287 49 :DFFKQMHTNKG 1g5aA 250 :FNSFQWDLNYS T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFK 1g5aA 261 :NPWVFRAMAGEMLFLANLGVDILR T0287 86 :KVYRLLES 1g5aA 287 :AVAFIWKQ T0287 94 :ETMELLHAIAE 1g5aA 304 :QAHALIRAFNA T0287 105 :NPNFLF 1g5aA 320 :APAVFF T0287 111 :SKFDRSILGIFLPFFSKP 1g5aA 347 :IGYNPLQMALLWNTLATR T0287 130 :MFKMSIREMDSQI 1g5aA 372 :ALTYRHNLPEHTA T0287 143 :ELYGTNL 1g5aA 405 :AYLGISG T0287 150 :PLLKLFVMT 1g5aA 419 :NRFFVNRFD T0287 159 :DE 1g5aA 443 :GD T0287 161 :EVNFYA 1g5aA 446 :RVSGTA T0287 167 :NLKTIEQ 1g5aA 453 :ALVGLAQ T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 534 :IYQDLRHMIAVRQSNPRFDGGRLVTF Number of specific fragments extracted= 16 number of extra gaps= 0 total=3553 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1033831911.pdb -s /var/tmp/to_scwrl_1033831911.seq -o /var/tmp/from_scwrl_1033831911.pdb > /var/tmp/scwrl_1033831911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033831911.pdb Number of alignments=460 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t04-global-adpstyle5.a2m # 1g5aA read from 1g5aA-T0287-t04-global-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSNN 1g5aA 142 :KSDG T0287 5 :MRK 1g5aA 162 :IGD T0287 8 :LFSMIADSKD 1g5aA 208 :FYYIFPDRRM T0287 19 :KEKLIESLQ 1g5aA 218 :PDQYDRTLR T0287 28 :ENELLNTDE 1g5aA 234 :PGGFSQLED T0287 37 :KKKIIDQIKTM 1g5aA 265 :FRAMAGEMLFL T0287 48 :HDFFKQMHTNKGALDKVL 1g5aA 289 :AFIWKQMGTSCENLPQAH T0287 67 :NYMKDYRAVIKSI 1g5aA 307 :ALIRAFNAVMRIA T0287 84 :FKKVYRLLESET 1g5aA 320 :APAVFFKSEAIV T0287 96 :MELLHAIAENP 1g5aA 333 :PDQVVQYIGQD T0287 108 :FLFSKFDRSILGIFLPFFSK 1g5aA 344 :ECQIGYNPLQMALLWNTLAT T0287 128 :PI 1g5aA 365 :EV T0287 130 :MFKMSIREMDSQI 1g5aA 372 :ALTYRHNLPEHTA T0287 143 :ELYGTNL 1g5aA 405 :AYLGISG T0287 150 :PLLKLFVMT 1g5aA 419 :NRFFVNRFD T0287 159 :DE 1g5aA 443 :GD T0287 161 :EVNFYA 1g5aA 446 :RVSGTA T0287 167 :NLKTIEQYNDYVRD 1g5aA 540 :HMIAVRQSNPRFDG T0287 181 :LLMKFDLEKYMKEKGVQ 1g5aA 575 :LLAFGNFSEYPQTVTAH T0287 198 :NA 1g5aA 597 :PF Number of specific fragments extracted= 20 number of extra gaps= 0 total=3573 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_429737492.pdb -s /var/tmp/to_scwrl_429737492.seq -o /var/tmp/from_scwrl_429737492.pdb > /var/tmp/scwrl_429737492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_429737492.pdb Number of alignments=461 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t04-local-adpstyle1.a2m # 1g5aA read from 1g5aA-T0287-t04-local-adpstyle1.a2m # found chain 1g5aA in training set T0287 4 :NM 1g5aA 248 :TT T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1g5aA 250 :FNSFQWDLNYSNPWVFRAMAGE T0287 187 :LEKYM 1g5aA 272 :MLFLA T0287 193 :EKGV 1g5aA 277 :NLGV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3577 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1514906335.pdb -s /var/tmp/to_scwrl_1514906335.seq -o /var/tmp/from_scwrl_1514906335.pdb > /var/tmp/scwrl_1514906335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514906335.pdb Number of alignments=462 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t04-local-adpstyle5.a2m # 1g5aA read from 1g5aA-T0287-t04-local-adpstyle5.a2m # found chain 1g5aA in training set T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1g5aA 250 :FNSFQWDLNYSNPWVFRAMAGE T0287 187 :LEKYM 1g5aA 272 :MLFLA T0287 193 :EKGV 1g5aA 277 :NLGV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3580 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_11809365.pdb -s /var/tmp/to_scwrl_11809365.seq -o /var/tmp/from_scwrl_11809365.pdb > /var/tmp/scwrl_11809365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_11809365.pdb Number of alignments=463 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t06-global-adpstyle1.a2m # 1g5aA read from 1g5aA-T0287-t06-global-adpstyle1.a2m # found chain 1g5aA in training set T0287 1 :MS 1g5aA 142 :KS T0287 3 :NNMRK 1g5aA 203 :PLFDN T0287 8 :LFSMIADSKD 1g5aA 209 :YYIFPDRRMP T0287 30 :ELLNTDE 1g5aA 219 :DQYDRTL T0287 37 :KKKII 1g5aA 233 :HPGGF T0287 42 :DQIKTM 1g5aA 286 :DAVAFI T0287 48 :HDFFKQMH 1g5aA 306 :HALIRAFN T0287 59 :GALDKVLRN 1g5aA 314 :AVMRIAAPA T0287 68 :YMKDYRAVIKSIGV 1g5aA 332 :HPDQVVQYIGQDEC T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFS 1g5aA 352 :LQMALLWNTLATREVNLLHQALTYRHNLPE T0287 113 :FDRSI 1g5aA 382 :HTAWV T0287 118 :LGIFLPFFSKPIMFKMSIREMDSQIELYG 1g5aA 401 :DEDAAYLGISGYDHRQFLNRFFVNRFDGS T0287 147 :TNLPLLKLFVMT 1g5aA 466 :DRIKLLYSIALS T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 519 :ALYAQRNDPSTAAGQIYQDLRHMIAVRQSNPRFDGGRLVTF Number of specific fragments extracted= 14 number of extra gaps= 0 total=3594 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_946047746.pdb -s /var/tmp/to_scwrl_946047746.seq -o /var/tmp/from_scwrl_946047746.pdb > /var/tmp/scwrl_946047746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946047746.pdb Number of alignments=464 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t06-global-adpstyle5.a2m # 1g5aA read from 1g5aA-T0287-t06-global-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MS 1g5aA 142 :KS T0287 3 :NNMRK 1g5aA 203 :PLFDN T0287 8 :LFSMIADSKD 1g5aA 209 :YYIFPDRRMP T0287 25 :SLQENEL 1g5aA 219 :DQYDRTL T0287 32 :LNTDEK 1g5aA 257 :LNYSNP T0287 38 :KKI 1g5aA 266 :RAM T0287 41 :IDQIKTM 1g5aA 285 :MDAVAFI T0287 48 :HDFFKQMH 1g5aA 306 :HALIRAFN T0287 59 :GALDKVLRN 1g5aA 314 :AVMRIAAPA T0287 68 :YMKDYRAVIKSIGVD 1g5aA 332 :HPDQVVQYIGQDECQ T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFS 1g5aA 353 :QMALLWNTLATREVNLLHQALTYRHNLPE T0287 112 :KFDRS 1g5aA 391 :SHDDI T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYG 1g5aA 400 :ADEDAAYLGISGYDHRQFLNRFFVNRFDGS T0287 147 :TNLPLLKLFVMT 1g5aA 466 :DRIKLLYSIALS T0287 159 :DEE 1g5aA 499 :SQD T0287 162 :VNFYANLKTIEQYNDYVRD 1g5aA 535 :YQDLRHMIAVRQSNPRFDG T0287 181 :LLMKFDLEKYMK 1g5aA 575 :LLAFGNFSEYPQ Number of specific fragments extracted= 17 number of extra gaps= 0 total=3611 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1706364818.pdb -s /var/tmp/to_scwrl_1706364818.seq -o /var/tmp/from_scwrl_1706364818.pdb > /var/tmp/scwrl_1706364818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706364818.pdb Number of alignments=465 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t06-local-adpstyle1.a2m # 1g5aA read from 1g5aA-T0287-t06-local-adpstyle1.a2m # found chain 1g5aA in training set T0287 4 :NMRKLFSMI 1g5aA 350 :NPLQMALLW T0287 180 :DLLMKFD 1g5aA 359 :NTLATRE T0287 188 :EKYMKE 1g5aA 366 :VNLLHQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=3614 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_984660507.pdb -s /var/tmp/to_scwrl_984660507.seq -o /var/tmp/from_scwrl_984660507.pdb > /var/tmp/scwrl_984660507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984660507.pdb Number of alignments=466 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t06-local-adpstyle5.a2m # 1g5aA read from 1g5aA-T0287-t06-local-adpstyle5.a2m # found chain 1g5aA in training set T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1g5aA 249 :TFNSFQWDLNYSNPWVFRAMAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=3615 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_394786057.pdb -s /var/tmp/to_scwrl_394786057.seq -o /var/tmp/from_scwrl_394786057.pdb > /var/tmp/scwrl_394786057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_394786057.pdb Number of alignments=467 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t2k-global-adpstyle1.a2m # 1g5aA read from 1g5aA-T0287-t2k-global-adpstyle1.a2m # found chain 1g5aA in training set T0287 1 :MSNNM 1g5aA 188 :TSNEH T0287 6 :RKLFSMIADSKDKKE 1g5aA 227 :EIFPDQHPGGFSQLE T0287 22 :LIESLQENELLNTD 1g5aA 242 :DGRWVWTTFNSFQW T0287 36 :EKKKIIDQIKTMHDFFKQMH 1g5aA 260 :SNPWVFRAMAGEMLFLANLG T0287 65 :LRNYMKDYRAVIKSIG 1g5aA 305 :AHALIRAFNAVMRIAA T0287 85 :KKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSK 1g5aA 321 :PAVFFKSEAIVHPDQVVQYIGQDECQIGYNPLQMALLWNTLAT T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1g5aA 364 :REVNLLHQALTYRHNLPEHTAWV T0287 156 :VMTDEEVNFYANLKTIEQYNDYVR 1g5aA 529 :TAAGQIYQDLRHMIAVRQSNPRFD T0287 188 :EKYMKEKGVQNA 1g5aA 553 :GGRLVTFNTNNK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3624 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_622051591.pdb -s /var/tmp/to_scwrl_622051591.seq -o /var/tmp/from_scwrl_622051591.pdb > /var/tmp/scwrl_622051591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_622051591.pdb Number of alignments=468 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t2k-global-adpstyle5.a2m # 1g5aA read from 1g5aA-T0287-t2k-global-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSNN 1g5aA 69 :WQSY T0287 5 :MRKLFSMIADS 1g5aA 162 :IGDLREVIAAL T0287 16 :KDKKEKLIESL 1g5aA 215 :RRMPDQYDRTL T0287 27 :QENELLNTD 1g5aA 242 :DGRWVWTTF T0287 36 :EKKKIIDQIKTMHDFFKQMH 1g5aA 260 :SNPWVFRAMAGEMLFLANLG T0287 61 :LDKV 1g5aA 288 :VAFI T0287 65 :LRNYMKDYRAVIKSIG 1g5aA 305 :AHALIRAFNAVMRIAA T0287 85 :KKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSK 1g5aA 321 :PAVFFKSEAIVHPDQVVQYIGQDECQIGYNPLQMALLWNTLAT T0287 133 :MSIREMDSQIELYGTNLP 1g5aA 364 :REVNLLHQALTYRHNLPE T0287 151 :LL 1g5aA 469 :KL T0287 153 :KLFV 1g5aA 472 :YSIA T0287 157 :MTD 1g5aA 492 :TLN T0287 160 :EEVNFYANLKTIEQYNDYVRDLLM 1g5aA 520 :LYAQRNDPSTAAGQIYQDLRHMIA T0287 188 :EKYMKEKGVQNA 1g5aA 553 :GGRLVTFNTNNK Number of specific fragments extracted= 14 number of extra gaps= 0 total=3638 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2062856709.pdb -s /var/tmp/to_scwrl_2062856709.seq -o /var/tmp/from_scwrl_2062856709.pdb > /var/tmp/scwrl_2062856709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2062856709.pdb Number of alignments=469 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t2k-local-adpstyle1.a2m # 1g5aA read from 1g5aA-T0287-t2k-local-adpstyle1.a2m # found chain 1g5aA in training set T0287 8 :LFSMIADSK 1g5aA 229 :FPDQHPGGF T0287 152 :LKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1g5aA 238 :SQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAG T0287 186 :DLEKYM 1g5aA 271 :EMLFLA T0287 193 :EKGV 1g5aA 277 :NLGV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3642 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_552191373.pdb -s /var/tmp/to_scwrl_552191373.seq -o /var/tmp/from_scwrl_552191373.pdb > /var/tmp/scwrl_552191373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552191373.pdb Number of alignments=470 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g5aA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1g5aA-T0287-t2k-local-adpstyle5.a2m # 1g5aA read from 1g5aA-T0287-t2k-local-adpstyle5.a2m # found chain 1g5aA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1g5aA 241 :EDGRWVWTTFNSFQWDLNYSNPWVFRAMAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=3643 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_770046463.pdb -s /var/tmp/to_scwrl_770046463.seq -o /var/tmp/from_scwrl_770046463.pdb > /var/tmp/scwrl_770046463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770046463.pdb Number of alignments=471 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-simplesw-adpstyle1.a2m # 1g5aA read from T0287-1g5aA-simplesw-adpstyle1.a2m # found chain 1g5aA in training set T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1g5aA 281 :DILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3644 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1814002806.pdb -s /var/tmp/to_scwrl_1814002806.seq -o /var/tmp/from_scwrl_1814002806.pdb > /var/tmp/scwrl_1814002806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814002806.pdb Number of alignments=472 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-simplesw-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-simplesw-adpstyle5.a2m # found chain 1g5aA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3644 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-global-adpstyle1.a2m # 1g5aA read from T0287-1g5aA-t04-global-adpstyle1.a2m # found chain 1g5aA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1g5aA)S1 T0287 3 :NNMRKLFSMIAD 1g5aA 2 :PNSQYLKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLE T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1g5aA 65 :LAQAWQSYSQRNSSLKDIDIARENNPDWILSNKQVGGVCYVDLFAGDLKGLKDKIPYFQ T0287 143 :ELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 124 :ELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3648 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2063197560.pdb -s /var/tmp/to_scwrl_2063197560.seq -o /var/tmp/from_scwrl_2063197560.pdb > /var/tmp/scwrl_2063197560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2063197560.pdb Number of alignments=473 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-global-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t04-global-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSNNMR 1g5aA 1 :SPNSQY T0287 8 :LFSMIAD 1g5aA 7 :LKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLE T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 1g5aA 65 :LAQAWQSYSQRNSSLKDIDIARENNPDWILSNKQVGGVCYVDLFAGDLKGLKD T0287 137 :EMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQN 1g5aA 118 :KIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISA Number of specific fragments extracted= 5 number of extra gaps= 0 total=3653 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_778108472.pdb -s /var/tmp/to_scwrl_778108472.seq -o /var/tmp/from_scwrl_778108472.pdb > /var/tmp/scwrl_778108472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_778108472.pdb Number of alignments=474 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSN 1g5aA 1 :SPN T0287 5 :MRKLFSMIADSK 1g5aA 4 :SQYLKTRILDIY T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g5aA 16 :TPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLEM T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSK 1g5aA 66 :AQAWQSYSQRNSSLKDIDIARENNPDWILSN T0287 118 :LG 1g5aA 125 :LG T0287 121 :FLPFFSKP 1g5aA 132 :LMPLFKCP T0287 146 :GTN 1g5aA 146 :GYA T0287 156 :VMTD 1g5aA 149 :VSSY T0287 162 :VNFYANLKTIEQYNDYVRDLLMK 1g5aA 153 :RDVNPALGTIGDLREVIAALHEA T0287 195 :GV 1g5aA 176 :GI Number of specific fragments extracted= 10 number of extra gaps= 0 total=3663 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_578559122.pdb -s /var/tmp/to_scwrl_578559122.seq -o /var/tmp/from_scwrl_578559122.pdb > /var/tmp/scwrl_578559122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578559122.pdb Number of alignments=475 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSN 1g5aA 1 :SPN T0287 5 :MRKLFSMIAD 1g5aA 4 :SQYLKTRILD T0287 15 :SKDKK 1g5aA 16 :TPEQR T0287 24 :ESLQENELLNT 1g5aA 21 :AGIEKSEDWRQ T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 32 :FSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 120 :IFLPFFSKP 1g5aA 131 :HLMPLFKCP T0287 140 :SQIELYGTNL 1g5aA 147 :YAVSSYRDVN T0287 166 :ANLKTIEQYNDYVRDLL 1g5aA 157 :PALGTIGDLREVIAALH T0287 193 :EKGV 1g5aA 174 :EAGI Number of specific fragments extracted= 10 number of extra gaps= 0 total=3673 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_611803697.pdb -s /var/tmp/to_scwrl_611803697.seq -o /var/tmp/from_scwrl_611803697.pdb > /var/tmp/scwrl_611803697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_611803697.pdb Number of alignments=476 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-local-adpstyle1.a2m # 1g5aA read from T0287-1g5aA-t04-local-adpstyle1.a2m # found chain 1g5aA in training set T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1g5aA 281 :DILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3674 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_769991664.pdb -s /var/tmp/to_scwrl_769991664.seq -o /var/tmp/from_scwrl_769991664.pdb > /var/tmp/scwrl_769991664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769991664.pdb Number of alignments=477 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-local-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t04-local-adpstyle5.a2m # found chain 1g5aA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3674 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g5aA in training set T0287 4 :NMRKLFSMIAD 1g5aA 3 :NSQYLKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLEM T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSK 1g5aA 66 :AQAWQSYSQRNSSLKDIDIARENNPDWILSN T0287 115 :RSILGI 1g5aA 97 :KQVGGV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3678 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_221951619.pdb -s /var/tmp/to_scwrl_221951619.seq -o /var/tmp/from_scwrl_221951619.pdb > /var/tmp/scwrl_221951619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_221951619.pdb Number of alignments=478 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g5aA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1g5aA)S1 T0287 3 :NNMRKLFSMIAD 1g5aA 2 :PNSQYLKTRILD T0287 15 :SKDKK 1g5aA 16 :TPEQR T0287 24 :ESLQENELLNT 1g5aA 21 :AGIEKSEDWRQ T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 32 :FSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 115 :RSILGIFL 1g5aA 97 :KQVGGVCY T0287 162 :VN 1g5aA 105 :VD T0287 164 :FYANLKTIEQYNDYVRDL 1g5aA 108 :FAGDLKGLKDKIPYFQEL Number of specific fragments extracted= 8 number of extra gaps= 0 total=3686 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_401612197.pdb -s /var/tmp/to_scwrl_401612197.seq -o /var/tmp/from_scwrl_401612197.pdb > /var/tmp/scwrl_401612197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_401612197.pdb Number of alignments=479 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-global-adpstyle1.a2m # 1g5aA read from T0287-1g5aA-t06-global-adpstyle1.a2m # found chain 1g5aA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1g5aA)S1 T0287 3 :NNMRKLFSMIAD 1g5aA 2 :PNSQYLKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLE T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1g5aA 65 :LAQAWQSYSQRNSSLKDIDIARENNPDWILSNKQVGGVCYVDLFAGDLKGLKDKIPYFQ T0287 143 :ELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 124 :ELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3690 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_322017094.pdb -s /var/tmp/to_scwrl_322017094.seq -o /var/tmp/from_scwrl_322017094.pdb > /var/tmp/scwrl_322017094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322017094.pdb Number of alignments=480 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-global-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t06-global-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSNNMR 1g5aA 1 :SPNSQY T0287 8 :LFSMIAD 1g5aA 7 :LKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLE T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 1g5aA 65 :LAQAWQSYSQRNSSLKDIDIARENNPDWILSNKQVGGVCYVDLFAGDLKGLKD T0287 137 :EMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQN 1g5aA 118 :KIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISA Number of specific fragments extracted= 5 number of extra gaps= 0 total=3695 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_75957410.pdb -s /var/tmp/to_scwrl_75957410.seq -o /var/tmp/from_scwrl_75957410.pdb > /var/tmp/scwrl_75957410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75957410.pdb Number of alignments=481 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSN 1g5aA 1 :SPN T0287 5 :MRKLFSMIADSK 1g5aA 4 :SQYLKTRILDIY T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g5aA 16 :TPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLEM T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSK 1g5aA 66 :AQAWQSYSQRNSSLKDIDIARENNPDWILSN T0287 118 :LG 1g5aA 125 :LG T0287 121 :FLPFFSKP 1g5aA 132 :LMPLFKCP T0287 146 :GTN 1g5aA 146 :GYA T0287 156 :VMTD 1g5aA 149 :VSSY T0287 162 :VNFYANLKTIEQYNDYVRDLLMK 1g5aA 153 :RDVNPALGTIGDLREVIAALHEA T0287 195 :GV 1g5aA 176 :GI Number of specific fragments extracted= 10 number of extra gaps= 0 total=3705 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_182627110.pdb -s /var/tmp/to_scwrl_182627110.seq -o /var/tmp/from_scwrl_182627110.pdb > /var/tmp/scwrl_182627110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_182627110.pdb Number of alignments=482 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSN 1g5aA 1 :SPN T0287 5 :MRKLFSMIAD 1g5aA 4 :SQYLKTRILD T0287 15 :SKDKK 1g5aA 16 :TPEQR T0287 24 :ESLQENELLNT 1g5aA 21 :AGIEKSEDWRQ T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 32 :FSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 120 :IFLPFFSKP 1g5aA 131 :HLMPLFKCP T0287 140 :SQIELYGTNL 1g5aA 147 :YAVSSYRDVN T0287 166 :ANLKTIEQYNDYVRDLL 1g5aA 157 :PALGTIGDLREVIAALH T0287 193 :EKGV 1g5aA 174 :EAGI Number of specific fragments extracted= 10 number of extra gaps= 0 total=3715 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_558896210.pdb -s /var/tmp/to_scwrl_558896210.seq -o /var/tmp/from_scwrl_558896210.pdb > /var/tmp/scwrl_558896210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_558896210.pdb Number of alignments=483 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-local-adpstyle1.a2m # 1g5aA read from T0287-1g5aA-t06-local-adpstyle1.a2m # found chain 1g5aA in training set T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1g5aA 281 :DILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3716 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_984586555.pdb -s /var/tmp/to_scwrl_984586555.seq -o /var/tmp/from_scwrl_984586555.pdb > /var/tmp/scwrl_984586555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984586555.pdb Number of alignments=484 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-local-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t06-local-adpstyle5.a2m # found chain 1g5aA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3716 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g5aA in training set T0287 4 :NMRKLFSMIAD 1g5aA 3 :NSQYLKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLEM T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSK 1g5aA 66 :AQAWQSYSQRNSSLKDIDIARENNPDWILSN T0287 115 :RSILGI 1g5aA 97 :KQVGGV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3720 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_749527023.pdb -s /var/tmp/to_scwrl_749527023.seq -o /var/tmp/from_scwrl_749527023.pdb > /var/tmp/scwrl_749527023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749527023.pdb Number of alignments=485 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g5aA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1g5aA)S1 T0287 3 :NNMRKLFSMIAD 1g5aA 2 :PNSQYLKTRILD T0287 15 :SKDKK 1g5aA 16 :TPEQR T0287 24 :ESLQENELLNT 1g5aA 21 :AGIEKSEDWRQ T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 32 :FSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 115 :RSILGIFL 1g5aA 97 :KQVGGVCY T0287 162 :VN 1g5aA 105 :VD T0287 164 :FYANLKTIEQYNDYVRDL 1g5aA 108 :FAGDLKGLKDKIPYFQEL Number of specific fragments extracted= 8 number of extra gaps= 0 total=3728 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_57101832.pdb -s /var/tmp/to_scwrl_57101832.seq -o /var/tmp/from_scwrl_57101832.pdb > /var/tmp/scwrl_57101832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_57101832.pdb Number of alignments=486 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-global-adpstyle1.a2m # 1g5aA read from T0287-1g5aA-t2k-global-adpstyle1.a2m # found chain 1g5aA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1g5aA)S1 T0287 3 :NNMRKLFSMIAD 1g5aA 2 :PNSQYLKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLE T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1g5aA 65 :LAQAWQSYSQRNSSLKDIDIARENNPDWILSNKQVGGVCYVDLFAGDLKGLKDKIPYFQ T0287 143 :ELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 124 :ELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3732 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_949555454.pdb -s /var/tmp/to_scwrl_949555454.seq -o /var/tmp/from_scwrl_949555454.pdb > /var/tmp/scwrl_949555454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_949555454.pdb Number of alignments=487 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-global-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t2k-global-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSNNMR 1g5aA 1 :SPNSQY T0287 8 :LFSMIAD 1g5aA 7 :LKTRILD T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1g5aA 14 :IYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLE T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 1g5aA 65 :LAQAWQSYSQRNSSLKDIDIARENNPDWILSNKQVGGVCYVDLFAGDLKGLKD T0287 137 :EMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQN 1g5aA 118 :KIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISA Number of specific fragments extracted= 5 number of extra gaps= 0 total=3737 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_669602896.pdb -s /var/tmp/to_scwrl_669602896.seq -o /var/tmp/from_scwrl_669602896.pdb > /var/tmp/scwrl_669602896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669602896.pdb Number of alignments=488 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSN 1g5aA 1 :SPN T0287 5 :MRKLFSMIADSKDKKEK 1g5aA 4 :SQYLKTRILDIYTPEQR T0287 22 :LIESLQENELL 1g5aA 22 :GIEKSEDWRQF T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 33 :SRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 118 :LG 1g5aA 125 :LG T0287 121 :FLPFFSKP 1g5aA 132 :LMPLFKCP T0287 138 :MDS 1g5aA 143 :SDG T0287 146 :G 1g5aA 146 :G T0287 154 :LFVMTDEEV 1g5aA 147 :YAVSSYRDV T0287 165 :YANLKTIEQYNDYVRDLLMK 1g5aA 156 :NPALGTIGDLREVIAALHEA Number of specific fragments extracted= 11 number of extra gaps= 0 total=3748 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1451530929.pdb -s /var/tmp/to_scwrl_1451530929.seq -o /var/tmp/from_scwrl_1451530929.pdb > /var/tmp/scwrl_1451530929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451530929.pdb Number of alignments=489 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g5aA in training set T0287 1 :MSN 1g5aA 1 :SPN T0287 5 :MRKLFSMIAD 1g5aA 4 :SQYLKTRILD T0287 15 :SKDKK 1g5aA 16 :TPEQR T0287 24 :ESLQENELLNT 1g5aA 21 :AGIEKSEDWRQ T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 32 :FSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 120 :IFLPFFSKP 1g5aA 131 :HLMPLFKCP T0287 140 :SQIELYGTNL 1g5aA 147 :YAVSSYRDVN T0287 166 :ANLKTIEQYNDYVRDLL 1g5aA 157 :PALGTIGDLREVIAALH T0287 193 :EKGV 1g5aA 174 :EAGI Number of specific fragments extracted= 10 number of extra gaps= 0 total=3758 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2050109914.pdb -s /var/tmp/to_scwrl_2050109914.seq -o /var/tmp/from_scwrl_2050109914.pdb > /var/tmp/scwrl_2050109914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050109914.pdb Number of alignments=490 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-local-adpstyle1.a2m # 1g5aA read from T0287-1g5aA-t2k-local-adpstyle1.a2m # found chain 1g5aA in training set T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1g5aA 281 :DILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3759 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1703434806.pdb -s /var/tmp/to_scwrl_1703434806.seq -o /var/tmp/from_scwrl_1703434806.pdb > /var/tmp/scwrl_1703434806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703434806.pdb Number of alignments=491 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-local-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t2k-local-adpstyle5.a2m # found chain 1g5aA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3759 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1g5aA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1g5aA)S1 T0287 3 :NNMRKLFSMIADSKDKKEKL 1g5aA 2 :PNSQYLKTRILDIYTPEQRA T0287 23 :IESLQENEL 1g5aA 23 :IEKSEDWRQ T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 32 :FSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 115 :RSILGI 1g5aA 97 :KQVGGV Number of specific fragments extracted= 5 number of extra gaps= 0 total=3764 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1881268422.pdb -s /var/tmp/to_scwrl_1881268422.seq -o /var/tmp/from_scwrl_1881268422.pdb > /var/tmp/scwrl_1881268422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1881268422.pdb Number of alignments=492 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g5aA read from T0287-1g5aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g5aA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1g5aA)S1 T0287 3 :NNMRKLFSMIAD 1g5aA 2 :PNSQYLKTRILD T0287 15 :SKDKK 1g5aA 16 :TPEQR T0287 24 :ESLQENELLNT 1g5aA 21 :AGIEKSEDWRQ T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 1g5aA 32 :FSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAW T0287 86 :KVYRLLESETMELLHAIAENPNFLFSK 1g5aA 70 :QSYSQRNSSLKDIDIARENNPDWILSN T0287 115 :RSILGIFL 1g5aA 97 :KQVGGVCY T0287 162 :VN 1g5aA 105 :VD T0287 164 :FYANLKTIEQYNDYVRDL 1g5aA 108 :FAGDLKGLKDKIPYFQEL Number of specific fragments extracted= 8 number of extra gaps= 0 total=3772 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1417532602.pdb -s /var/tmp/to_scwrl_1417532602.seq -o /var/tmp/from_scwrl_1417532602.pdb > /var/tmp/scwrl_1417532602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1417532602.pdb Number of alignments=493 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1g5aA-t04-muscle.a2m.gz # 1g5aA read from T0287-1g5aA-t04-muscle.a2m.gz # found chain 1g5aA in training set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1g5aA 158 :ALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEH T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1g5aA 260 :SNPWVFRAMAGEMLFLANLGVDILRMDAVAFI T0287 68 :YMKDYRAVIKSIGVDKF 1g5aA 308 :LIRAFNAVMRIAAPAVF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1g5aA 355 :ALLWNTLATREVNLLHQALTYRHNLPEHTAWVNY T0287 119 :GI 1g5aA 443 :GD T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 534 :IYQDLRHMIAVRQSNPRFDGGRLVTFNTNNKHIIGYIRNNALLAFGNFSEYPQTVTAHTLQAMPFKAHDLIGGKTVSLN Number of specific fragments extracted= 6 number of extra gaps= 0 total=3778 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1715244171.pdb -s /var/tmp/to_scwrl_1715244171.seq -o /var/tmp/from_scwrl_1715244171.pdb > /var/tmp/scwrl_1715244171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1715244171.pdb Number of alignments=494 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1g5aA-t06-muscle.a2m.gz # 1g5aA read from T0287-1g5aA-t06-muscle.a2m.gz # found chain 1g5aA in training set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1g5aA 158 :ALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEH T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVL 1g5aA 260 :SNPWVFRAMAGEMLFLANLGVDILRMDAVA T0287 66 :RNYMKDYRAVIKSIGVDKF 1g5aA 306 :HALIRAFNAVMRIAAPAVF T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 1g5aA 355 :ALLWNTLATREVNLLHQALTYRHNLPE T0287 112 :KFDRSILGIFLPFFSKPIMF 1g5aA 466 :DRIKLLYSIALSTGGLPLIY T0287 132 :KMSIREMDSQIELYGTNLPLLK 1g5aA 531 :AGQIYQDLRHMIAVRQSNPRFD T0287 154 :LFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 567 :IGYIRNNALLAFGNFSEYPQTVTAHTLQAMPFKAHDLIGGKTVSLN Number of specific fragments extracted= 7 number of extra gaps= 0 total=3785 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_679832521.pdb -s /var/tmp/to_scwrl_679832521.seq -o /var/tmp/from_scwrl_679832521.pdb > /var/tmp/scwrl_679832521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_679832521.pdb Number of alignments=495 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1g5aA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1g5aA-t2k-muscle.a2m.gz # 1g5aA read from T0287-1g5aA-t2k-muscle.a2m.gz # found chain 1g5aA in training set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1g5aA 158 :ALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEH T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKV 1g5aA 260 :SNPWVFRAMAGEMLFLANLGVDILRMDAV T0287 65 :LRNYMKDYRAVIKSIGVDKF 1g5aA 305 :AHALIRAFNAVMRIAAPAVF T0287 85 :KKVYRLLESETMELLHAI 1g5aA 334 :DQVVQYIGQDECQIGYNP T0287 103 :AENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYG 1g5aA 359 :NTLATREVNLLHQALTYRHNLPEHTAWVNYVRSHDDIGWTFADE T0287 147 :TNLPLLKLFVMTDEEVNFYA 1g5aA 468 :IKLLYSIALSTGGLPLIYLG T0287 167 :NLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1g5aA 527 :PSTAAGQIYQDLRHMIAVRQSNPRFDGGRLVTF Number of specific fragments extracted= 7 number of extra gaps= 0 total=3792 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_976413774.pdb -s /var/tmp/to_scwrl_976413774.seq -o /var/tmp/from_scwrl_976413774.pdb > /var/tmp/scwrl_976413774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976413774.pdb Number of alignments=496 # command:# Prefix for input files set to 1hh8A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-global-adpstyle5.a2m # 1hh8A read from 1e96B-T0287-fssp-global-adpstyle5.a2m # found chain 1hh8A in training set T0287 43 :QIKTMHDFFKQM 1hh8A 21 :DWKGALDAFSAV T0287 56 :TNKGA 1hh8A 34 :DPHSR T0287 67 :NYMKDY 1hh8A 39 :ICFNIG T0287 95 :TMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQ 1hh8A 57 :EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG T0287 142 :IELYGTNLPLLKLFVMTDEEV 1hh8A 109 :YKILGLQFKLFACEVLYNIAF T0287 164 :FYANLKTIEQYNDYVRDLL 1hh8A 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKFDLEKYMKEKGVQN 1hh8A 152 :SEPRHSKIDKAMECVW Number of specific fragments extracted= 7 number of extra gaps= 0 total=3799 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_552421032.pdb -s /var/tmp/to_scwrl_552421032.seq -o /var/tmp/from_scwrl_552421032.pdb > /var/tmp/scwrl_552421032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552421032.pdb Number of alignments=497 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1e96B-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1e96B-T0287-fssp-local-adpstyle5.a2m # 1hh8A read from 1e96B-T0287-fssp-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 113 :FDRSILGIFLPFFSKPIMFKMSIR 1hh8A 107 :IDYKILGLQFKLFACEVLYNIAFM T0287 137 :EMDSQIE 1hh8A 132 :AKKEEWK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3801 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1074618577.pdb -s /var/tmp/to_scwrl_1074618577.seq -o /var/tmp/from_scwrl_1074618577.pdb > /var/tmp/scwrl_1074618577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074618577.pdb Number of alignments=498 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-global-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t04-global-adpstyle1.a2m # found chain 1hh8A in training set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLN 1hh8A 66 :RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL T0287 170 :TIEQ 1hh8A 99 :IQLR T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 119 :FACEVLYNIAFMYAKKEEWKKAEEQL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3804 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1598465364.pdb -s /var/tmp/to_scwrl_1598465364.seq -o /var/tmp/from_scwrl_1598465364.pdb > /var/tmp/scwrl_1598465364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1598465364.pdb Number of alignments=499 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-global-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t04-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)Q197 because last residue in template chain is (1hh8A)L193 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELL 1hh8A 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAV T0287 46 :T 1hh8A 33 :Q T0287 48 :HD 1hh8A 34 :DP T0287 51 :FKQMHTNKGALDKVLRNY 1hh8A 36 :HSRICFNIGCMYTILKNM T0287 143 :ELYGTNLPLLKLFVMTDEEVNFY 1hh8A 99 :IQLRGNQLIDYKILGLQFKLFAC T0287 166 :ANLK 1hh8A 125 :YNIA T0287 170 :TIE 1hh8A 147 :ATS T0287 173 :QYNDYV 1hh8A 170 :KLYEPV T0287 180 :DLLMKFDLEKYMKEKGV 1hh8A 176 :VIPVGRLFRPNERQVAQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=3813 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_467794094.pdb -s /var/tmp/to_scwrl_467794094.seq -o /var/tmp/from_scwrl_467794094.pdb > /var/tmp/scwrl_467794094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467794094.pdb Number of alignments=500 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-local-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t04-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 20 :EKLI 1hh8A 95 :KEAL T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 1hh8A 99 :IQLRGNQLIDYKILGLQFKLFA Number of specific fragments extracted= 2 number of extra gaps= 0 total=3815 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1626809950.pdb -s /var/tmp/to_scwrl_1626809950.seq -o /var/tmp/from_scwrl_1626809950.pdb > /var/tmp/scwrl_1626809950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626809950.pdb Number of alignments=501 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t04-local-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t04-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 143 :ELYGTNLPLLKLFVMTDEEVN 1hh8A 99 :IQLRGNQLIDYKILGLQFKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3816 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_221028180.pdb -s /var/tmp/to_scwrl_221028180.seq -o /var/tmp/from_scwrl_221028180.pdb > /var/tmp/scwrl_221028180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_221028180.pdb Number of alignments=502 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-global-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t06-global-adpstyle1.a2m # found chain 1hh8A in training set T0287 1 :MSNNMRKLFSMIADSKDKKEK 1hh8A 66 :RDKHLAVAYFQRGMLYYQTEK T0287 131 :FKMSIREMDSQIELYGTNLPL 1hh8A 87 :YDLAIKDLKEALIQLRGNQLI T0287 152 :LKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1hh8A 118 :LFACEVLYNIAFMYAKKEEWKKAEEQLALATSM T0287 185 :FDLEKYMKEKGVQNA 1hh8A 161 :KAMECVWKQKLYEPV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3820 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_134313254.pdb -s /var/tmp/to_scwrl_134313254.seq -o /var/tmp/from_scwrl_134313254.pdb > /var/tmp/scwrl_134313254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_134313254.pdb Number of alignments=503 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-global-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t06-global-adpstyle5.a2m # found chain 1hh8A in training set T0287 12 :IADSKDKKEKLI 1hh8A 43 :IGCMYTILKNMT T0287 24 :ESLQENELLNTDE 1hh8A 58 :KAFTRSINRDKHL T0287 52 :KQMHTNKGALDKVLRN 1hh8A 71 :AVAYFQRGMLYYQTEK T0287 105 :NPNFLFS 1hh8A 153 :EPRHSKI T0287 196 :VQNA 1hh8A 190 :VAQL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3825 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1542523863.pdb -s /var/tmp/to_scwrl_1542523863.seq -o /var/tmp/from_scwrl_1542523863.pdb > /var/tmp/scwrl_1542523863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1542523863.pdb Number of alignments=504 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-local-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t06-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 3 :NNMRKLF 1hh8A 110 :KILGLQF T0287 167 :NLKTIEQYNDYVRDLLMKFDLEK 1hh8A 117 :KLFACEVLYNIAFMYAKKEEWKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3827 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_999136653.pdb -s /var/tmp/to_scwrl_999136653.seq -o /var/tmp/from_scwrl_999136653.pdb > /var/tmp/scwrl_999136653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999136653.pdb Number of alignments=505 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t06-local-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t06-local-adpstyle5.a2m # found chain 1hh8A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3827 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-global-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t2k-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)L181 because last residue in template chain is (1hh8A)L193 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1hh8A 4 :VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSR T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1hh8A 39 :ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT T0287 100 :HAIAENPNFLFS 1hh8A 96 :EALIQLRGNQLI T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRD 1hh8A 124 :LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=3831 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_712872376.pdb -s /var/tmp/to_scwrl_712872376.seq -o /var/tmp/from_scwrl_712872376.pdb > /var/tmp/scwrl_712872376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_712872376.pdb Number of alignments=506 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-global-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t2k-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)D180 because last residue in template chain is (1hh8A)L193 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTD 1hh8A 4 :VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSR T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFK 1hh8A 39 :ICFNIGCMYTILKNMTEAEKAFTRSINRDKHL T0287 86 :KVYRLL 1hh8A 72 :VAYFQR T0287 93 :SET 1hh8A 78 :GML T0287 96 :MELLHAIAENPNFLFS 1hh8A 92 :KDLKEALIQLRGNQLI T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 1hh8A 124 :LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK T0287 157 :MTDEEVNFYANLKTIEQYNDYVR 1hh8A 170 :KLYEPVVIPVGRLFRPNERQVAQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=3838 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_6843913.pdb -s /var/tmp/to_scwrl_6843913.seq -o /var/tmp/from_scwrl_6843913.pdb > /var/tmp/scwrl_6843913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6843913.pdb Number of alignments=507 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-local-adpstyle1.a2m # 1hh8A read from 1hh8A-T0287-t2k-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 98 :LLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMD 1hh8A 144 :LALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=3839 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1769128316.pdb -s /var/tmp/to_scwrl_1769128316.seq -o /var/tmp/from_scwrl_1769128316.pdb > /var/tmp/scwrl_1769128316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1769128316.pdb Number of alignments=508 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hh8A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hh8A-T0287-t2k-local-adpstyle5.a2m # 1hh8A read from 1hh8A-T0287-t2k-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 98 :LLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 1hh8A 144 :LALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3840 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_934823995.pdb -s /var/tmp/to_scwrl_934823995.seq -o /var/tmp/from_scwrl_934823995.pdb > /var/tmp/scwrl_934823995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_934823995.pdb Number of alignments=509 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-simplesw-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-simplesw-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3841 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_408456110.pdb -s /var/tmp/to_scwrl_408456110.seq -o /var/tmp/from_scwrl_408456110.pdb > /var/tmp/scwrl_408456110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408456110.pdb Number of alignments=510 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-simplesw-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-simplesw-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=3842 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2091145410.pdb -s /var/tmp/to_scwrl_2091145410.seq -o /var/tmp/from_scwrl_2091145410.pdb > /var/tmp/scwrl_2091145410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2091145410.pdb Number of alignments=511 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t04-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 22 :LIE 1hh8A 3 :LVE T0287 25 :SLQENELLNTDEK 1hh8A 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1hh8A 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1hh8A 105 :QLIDYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3848 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1010781406.pdb -s /var/tmp/to_scwrl_1010781406.seq -o /var/tmp/from_scwrl_1010781406.pdb > /var/tmp/scwrl_1010781406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1010781406.pdb Number of alignments=512 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 Warning: unaligning (T0287)F185 because last residue in template chain is (1hh8A)L193 T0287 3 :NNM 1hh8A 3 :LVE T0287 23 :IESLQENELLNTDEK 1hh8A 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1hh8A 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 112 :KFDRSILGIFLPFFSKPIMFKMSI 1hh8A 106 :LIDYKILGLQFKLFACEVLYNIAF T0287 136 :REMDSQIELYG 1hh8A 138 :KKAEEQLALAT T0287 148 :NLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1hh8A 149 :SMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL T0287 182 :LMK 1hh8A 190 :VAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3856 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_591083221.pdb -s /var/tmp/to_scwrl_591083221.seq -o /var/tmp/from_scwrl_591083221.pdb > /var/tmp/scwrl_591083221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_591083221.pdb Number of alignments=513 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDKKEK 1hh8A 15 :LAADKKDWKGA T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1hh8A 26 :LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1hh8A 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :SKFDRSILGIFLPFF 1hh8A 105 :QLIDYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1hh8A 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKF 1hh8A 150 :MKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 9 number of extra gaps= 0 total=3865 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_502557974.pdb -s /var/tmp/to_scwrl_502557974.seq -o /var/tmp/from_scwrl_502557974.pdb > /var/tmp/scwrl_502557974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_502557974.pdb Number of alignments=514 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDK 1hh8A 15 :LAADKKDW T0287 20 :EKLIESLQEN 1hh8A 23 :KGALDAFSAV T0287 34 :TDEKK 1hh8A 33 :QDPHS T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 38 :RICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 13 number of extra gaps= 0 total=3878 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1995367960.pdb -s /var/tmp/to_scwrl_1995367960.seq -o /var/tmp/from_scwrl_1995367960.pdb > /var/tmp/scwrl_1995367960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1995367960.pdb Number of alignments=515 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t04-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3879 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1340610243.pdb -s /var/tmp/to_scwrl_1340610243.seq -o /var/tmp/from_scwrl_1340610243.pdb > /var/tmp/scwrl_1340610243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1340610243.pdb Number of alignments=516 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3880 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_559659806.pdb -s /var/tmp/to_scwrl_559659806.seq -o /var/tmp/from_scwrl_559659806.pdb > /var/tmp/scwrl_559659806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559659806.pdb Number of alignments=517 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1hh8A 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA T0287 47 :MHD 1hh8A 163 :MEC Number of specific fragments extracted= 2 number of extra gaps= 0 total=3882 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_797439767.pdb -s /var/tmp/to_scwrl_797439767.seq -o /var/tmp/from_scwrl_797439767.pdb > /var/tmp/scwrl_797439767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797439767.pdb Number of alignments=518 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set T0287 24 :ESLQEN 1hh8A 8 :SLWNEG T0287 30 :ELLNTDEKKKIIDQIKT 1hh8A 15 :LAADKKDWKGALDAFSA T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 42 :NIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKE 1hh8A 159 :IDKAMEC Number of specific fragments extracted= 10 number of extra gaps= 0 total=3892 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2010213139.pdb -s /var/tmp/to_scwrl_2010213139.seq -o /var/tmp/from_scwrl_2010213139.pdb > /var/tmp/scwrl_2010213139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2010213139.pdb Number of alignments=519 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t06-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 22 :LIE 1hh8A 3 :LVE T0287 25 :SLQENELLNTDEK 1hh8A 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1hh8A 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1hh8A 105 :QLIDYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3898 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2011190736.pdb -s /var/tmp/to_scwrl_2011190736.seq -o /var/tmp/from_scwrl_2011190736.pdb > /var/tmp/scwrl_2011190736.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011190736.pdb Number of alignments=520 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 Warning: unaligning (T0287)F185 because last residue in template chain is (1hh8A)L193 T0287 3 :NNM 1hh8A 3 :LVE T0287 23 :IESLQENELLNTDEK 1hh8A 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1hh8A 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 112 :KFDRSILGIFLPFFSKPIMFKMSI 1hh8A 106 :LIDYKILGLQFKLFACEVLYNIAF T0287 136 :REMDSQIELYG 1hh8A 138 :KKAEEQLALAT T0287 148 :NLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1hh8A 149 :SMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL T0287 182 :LMK 1hh8A 190 :VAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3906 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_700066034.pdb -s /var/tmp/to_scwrl_700066034.seq -o /var/tmp/from_scwrl_700066034.pdb > /var/tmp/scwrl_700066034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700066034.pdb Number of alignments=521 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDKKEK 1hh8A 15 :LAADKKDWKGA T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDK 1hh8A 26 :LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK T0287 85 :KKVYRLLESETMELLHAIAEN 1hh8A 84 :TEKYDLAIKDLKEALIQLRGN T0287 111 :SKFDRSILGIFLPFF 1hh8A 105 :QLIDYKILGLQFKLF T0287 164 :FYANLKTIEQYNDYVRDLL 1hh8A 130 :MYAKKEEWKKAEEQLALAT T0287 183 :MKF 1hh8A 150 :MKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 9 number of extra gaps= 0 total=3915 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1566164298.pdb -s /var/tmp/to_scwrl_1566164298.seq -o /var/tmp/from_scwrl_1566164298.pdb > /var/tmp/scwrl_1566164298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566164298.pdb Number of alignments=522 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDK 1hh8A 15 :LAADKKDW T0287 20 :EKLIESLQEN 1hh8A 23 :KGALDAFSAV T0287 34 :TDEKK 1hh8A 33 :QDPHS T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 38 :RICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 13 number of extra gaps= 0 total=3928 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1744975511.pdb -s /var/tmp/to_scwrl_1744975511.seq -o /var/tmp/from_scwrl_1744975511.pdb > /var/tmp/scwrl_1744975511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744975511.pdb Number of alignments=523 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t06-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3929 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2117598636.pdb -s /var/tmp/to_scwrl_2117598636.seq -o /var/tmp/from_scwrl_2117598636.pdb > /var/tmp/scwrl_2117598636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117598636.pdb Number of alignments=524 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3930 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1133924823.pdb -s /var/tmp/to_scwrl_1133924823.seq -o /var/tmp/from_scwrl_1133924823.pdb > /var/tmp/scwrl_1133924823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1133924823.pdb Number of alignments=525 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQI 1hh8A 133 :KKEEWKKAEEQLALATSMKSEPRHSKIDKA T0287 47 :MHD 1hh8A 163 :MEC Number of specific fragments extracted= 2 number of extra gaps= 0 total=3932 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_277324385.pdb -s /var/tmp/to_scwrl_277324385.seq -o /var/tmp/from_scwrl_277324385.pdb > /var/tmp/scwrl_277324385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277324385.pdb Number of alignments=526 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set T0287 24 :ESLQEN 1hh8A 8 :SLWNEG T0287 30 :ELLNTDEKKKIIDQIKT 1hh8A 15 :LAADKKDWKGALDAFSA T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 42 :NIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKE 1hh8A 159 :IDKAMEC Number of specific fragments extracted= 10 number of extra gaps= 0 total=3942 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_946528763.pdb -s /var/tmp/to_scwrl_946528763.seq -o /var/tmp/from_scwrl_946528763.pdb > /var/tmp/scwrl_946528763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946528763.pdb Number of alignments=527 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t2k-global-adpstyle1.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 22 :LIE 1hh8A 3 :LVE T0287 25 :SLQENELLNTDEK 1hh8A 8 :SLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV T0287 88 :YRLLESETMELLHAIAENPNFLF 1hh8A 77 :RGMLYYQTEKYDLAIKDLKEALI T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1hh8A 105 :QLIDYKILGLQFKLFACEVLYNIAF T0287 138 :MDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 130 :MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3948 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1686345855.pdb -s /var/tmp/to_scwrl_1686345855.seq -o /var/tmp/from_scwrl_1686345855.pdb > /var/tmp/scwrl_1686345855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686345855.pdb Number of alignments=528 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-global-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 Warning: unaligning (T0287)F185 because last residue in template chain is (1hh8A)L193 T0287 3 :NNM 1hh8A 3 :LVE T0287 23 :IESLQENELLNTDEK 1hh8A 6 :AISLWNEGVLAADKK T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA T0287 89 :RLLESETMELLHAIAENPNFLFS 1hh8A 78 :GMLYYQTEKYDLAIKDLKEALIQ T0287 112 :KFDRSILGIFLPFFSKPIMFKMSI 1hh8A 106 :LIDYKILGLQFKLFACEVLYNIAF T0287 136 :REMDSQIELYG 1hh8A 138 :KKAEEQLALAT T0287 148 :NLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1hh8A 149 :SMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL T0287 182 :LMK 1hh8A 190 :VAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3956 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1351942962.pdb -s /var/tmp/to_scwrl_1351942962.seq -o /var/tmp/from_scwrl_1351942962.pdb > /var/tmp/scwrl_1351942962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351942962.pdb Number of alignments=529 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NNMR 1hh8A 3 :LVEA T0287 7 :KLFS 1hh8A 8 :SLWN T0287 11 :MIADSKDKKEKL 1hh8A 15 :LAADKKDWKGAL T0287 24 :ESLQE 1hh8A 27 :DAFSA T0287 33 :NTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1hh8A 32 :VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIKSIGVDKFKKVYRLL 1hh8A 75 :FQRGMLYYQTEKYDLAIKDL T0287 99 :LHAIAENPNF 1hh8A 95 :KEALIQLRGN T0287 111 :SKFDRSILGIFLPFF 1hh8A 105 :QLIDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLL 1hh8A 128 :AFMYAKKEEWKKAEEQLALAT T0287 183 :MK 1hh8A 150 :MK T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 11 number of extra gaps= 0 total=3967 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_397510481.pdb -s /var/tmp/to_scwrl_397510481.seq -o /var/tmp/from_scwrl_397510481.pdb > /var/tmp/scwrl_397510481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_397510481.pdb Number of alignments=530 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1hh8A)S2 T0287 3 :NN 1hh8A 3 :LV T0287 5 :MRKLFS 1hh8A 6 :AISLWN T0287 11 :MIADSKDK 1hh8A 15 :LAADKKDW T0287 20 :EKLIESLQEN 1hh8A 23 :KGALDAFSAV T0287 34 :TDEKK 1hh8A 33 :QDPHS T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 38 :RICFNIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKEKGVQNA 1hh8A 159 :IDKAMECVWKQKL Number of specific fragments extracted= 13 number of extra gaps= 0 total=3980 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_6656302.pdb -s /var/tmp/to_scwrl_6656302.seq -o /var/tmp/from_scwrl_6656302.pdb > /var/tmp/scwrl_6656302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6656302.pdb Number of alignments=531 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-adpstyle1.a2m # 1hh8A read from T0287-1hh8A-t2k-local-adpstyle1.a2m # found chain 1hh8A in training set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1hh8A 23 :KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3981 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_831269266.pdb -s /var/tmp/to_scwrl_831269266.seq -o /var/tmp/from_scwrl_831269266.pdb > /var/tmp/scwrl_831269266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831269266.pdb Number of alignments=532 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-local-adpstyle5.a2m # found chain 1hh8A in training set T0287 35 :DEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1hh8A 20 :KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3982 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_618538661.pdb -s /var/tmp/to_scwrl_618538661.seq -o /var/tmp/from_scwrl_618538661.pdb > /var/tmp/scwrl_618538661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_618538661.pdb Number of alignments=533 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hh8A in training set T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3983 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hh8A read from T0287-1hh8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hh8A in training set T0287 24 :ESLQEN 1hh8A 8 :SLWNEG T0287 30 :ELLNTDEKKKIIDQIKT 1hh8A 15 :LAADKKDWKGALDAFSA T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKD 1hh8A 42 :NIGCMYTILKNMTEAEKAFTRSINR T0287 72 :YRAVIK 1hh8A 76 :QRGMLY T0287 79 :IGVDKFKKVYRLLES 1hh8A 82 :YQTEKYDLAIKDLKE T0287 98 :L 1hh8A 97 :A T0287 102 :IAENPNFLF 1hh8A 98 :LIQLRGNQL T0287 113 :FDRSILGIFLPFF 1hh8A 107 :IDYKILGLQFKLF T0287 162 :VNFYANLKTIEQYNDYVRDLLMKFD 1hh8A 128 :AFMYAKKEEWKKAEEQLALATSMKS T0287 187 :LEKYMKE 1hh8A 159 :IDKAMEC Number of specific fragments extracted= 10 number of extra gaps= 0 total=3993 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_140969556.pdb -s /var/tmp/to_scwrl_140969556.seq -o /var/tmp/from_scwrl_140969556.pdb > /var/tmp/scwrl_140969556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_140969556.pdb Number of alignments=534 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hh8A-t04-muscle.a2m.gz # 1hh8A read from T0287-1hh8A-t04-muscle.a2m.gz # found chain 1hh8A in training set Warning: unaligning (T0287)D17 because first residue in template chain is (1hh8A)S2 T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1hh8A 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR T0287 118 :LGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 1hh8A 117 :KLFACEVLYNIAFMYAKKEEWKKAEEQLALATS T0287 156 :VMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 150 :MKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3996 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_226309483.pdb -s /var/tmp/to_scwrl_226309483.seq -o /var/tmp/from_scwrl_226309483.pdb > /var/tmp/scwrl_226309483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_226309483.pdb Number of alignments=535 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hh8A-t06-muscle.a2m.gz # 1hh8A read from T0287-1hh8A-t06-muscle.a2m.gz # found chain 1hh8A in training set T0287 1 :MSNNMRKLFSM 1hh8A 2 :SLVEAISLWNE T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRS 1hh8A 13 :GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 102 :RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIP Number of specific fragments extracted= 3 number of extra gaps= 0 total=3999 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1617675313.pdb -s /var/tmp/to_scwrl_1617675313.seq -o /var/tmp/from_scwrl_1617675313.pdb > /var/tmp/scwrl_1617675313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617675313.pdb Number of alignments=536 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hh8A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hh8A-t2k-muscle.a2m.gz # 1hh8A read from T0287-1hh8A-t2k-muscle.a2m.gz # found chain 1hh8A in training set Warning: unaligning (T0287)D17 because first residue in template chain is (1hh8A)S2 T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1hh8A 3 :LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD T0287 106 :PNFLFSKFDRSILGIFLPFFSKPI 1hh8A 68 :KHLAVAYFQRGMLYYQTEKYDLAI T0287 130 :MFKMSIREMDSQIEL 1hh8A 93 :DLKEALIQLRGNQLI T0287 145 :YGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hh8A 124 :LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIP Number of specific fragments extracted= 4 number of extra gaps= 0 total=4003 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_853841932.pdb -s /var/tmp/to_scwrl_853841932.seq -o /var/tmp/from_scwrl_853841932.pdb > /var/tmp/scwrl_853841932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_853841932.pdb Number of alignments=537 # command:# Prefix for input files set to 1hzgA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-fssp-global-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-fssp-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MSN 1hzgA 720 :SIE T0287 4 :NMRKLFSMI 1hzgA 728 :NFQKLSRGN T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIID 1hzgA 760 :AANADEQQPLFFYIKKDRFDNHGYDQYFYD T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 859 :TSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV T0287 173 :QYNDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 983 :DGNVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=4010 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_233153396.pdb -s /var/tmp/to_scwrl_233153396.seq -o /var/tmp/from_scwrl_233153396.pdb > /var/tmp/scwrl_233153396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_233153396.pdb Number of alignments=538 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-fssp-local-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-fssp-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 870 :VARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVR T0287 174 :YNDYVRDLLMKFD 1hzgA 984 :GNVVVRSLSESYS Number of specific fragments extracted= 4 number of extra gaps= 0 total=4014 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1239319983.pdb -s /var/tmp/to_scwrl_1239319983.seq -o /var/tmp/from_scwrl_1239319983.pdb > /var/tmp/scwrl_1239319983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239319983.pdb Number of alignments=539 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-global-adpstyle1.a2m # 1hzgA read from 1hzgA-T0287-t2k-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIID 1hzgA 760 :AANADEQQPLFFYIKKDRFDNHGYDQYFYDNTVGPNGIPTLN T0287 43 :QIKTMHDFFKQMHTNKGALDK 1hzgA 806 :EIPSDSSSLGSTYWKKYNLTN T0287 64 :VLRNYMKDYRAVIKS 1hzgA 846 :ALEEVQEGKPVIITS T0287 79 :IGVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 895 :TGVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSI 1hzgA 932 :FEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRVDGNVVVRSLSESYSLNADASEISVL Number of specific fragments extracted= 7 number of extra gaps= 0 total=4021 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1788665927.pdb -s /var/tmp/to_scwrl_1788665927.seq -o /var/tmp/from_scwrl_1788665927.pdb > /var/tmp/scwrl_1788665927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1788665927.pdb Number of alignments=540 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-global-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-t2k-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFS 1hzgA 725 :SKSNFQKLSR T0287 11 :MIA 1hzgA 745 :SIS T0287 14 :DSKDKKEK 1hzgA 759 :EAANADEQ T0287 22 :LIESLQENELLNTDEKK 1hzgA 769 :LFFYIKKDRFDNHGYDQ T0287 39 :KIIDQIKTMHDFF 1hzgA 795 :NGIPTLNTYTGEI T0287 52 :KQMHTNKGALDK 1hzgA 815 :GSTYWKKYNLTN T0287 64 :VLRNYMKDYRAV 1hzgA 846 :ALEEVQEGKPVI T0287 76 :IKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 892 :TSTTGVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSI 1hzgA 932 :FEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRVDGNVVVRSLSESYSL T0287 190 :YMKEKGVQN 1hzgA 1000 :DASEISVLK Number of specific fragments extracted= 12 number of extra gaps= 0 total=4033 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_641609507.pdb -s /var/tmp/to_scwrl_641609507.seq -o /var/tmp/from_scwrl_641609507.pdb > /var/tmp/scwrl_641609507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_641609507.pdb Number of alignments=541 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-local-adpstyle1.a2m # 1hzgA read from 1hzgA-T0287-t2k-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 896 :GVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSIL 1hzgA 932 :FEDSLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=4036 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1182981746.pdb -s /var/tmp/to_scwrl_1182981746.seq -o /var/tmp/from_scwrl_1182981746.pdb > /var/tmp/scwrl_1182981746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182981746.pdb Number of alignments=542 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hzgA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1hzgA-T0287-t2k-local-adpstyle5.a2m # 1hzgA read from 1hzgA-T0287-t2k-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 79 :IGVDKFKKVYRLLESETMELLHAIAENPNFL 1hzgA 895 :TGVKKAVEVLELLTKEPIPRVEGIMSNDFLV T0287 110 :FSK 1hzgA 928 :LSE T0287 113 :FDRSILG 1hzgA 932 :FEDSLIT T0287 124 :FFSKPIMFKMSIR 1hzgA 939 :YSSSEKKPDSQIT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4040 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_651963686.pdb -s /var/tmp/to_scwrl_651963686.seq -o /var/tmp/from_scwrl_651963686.pdb > /var/tmp/scwrl_651963686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_651963686.pdb Number of alignments=543 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-simplesw-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-simplesw-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=4043 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1232692727.pdb -s /var/tmp/to_scwrl_1232692727.seq -o /var/tmp/from_scwrl_1232692727.pdb > /var/tmp/scwrl_1232692727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1232692727.pdb Number of alignments=544 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-simplesw-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-simplesw-adpstyle5.a2m # found chain 1hzgA in template set T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 868 :TIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKT 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4046 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1685539720.pdb -s /var/tmp/to_scwrl_1685539720.seq -o /var/tmp/from_scwrl_1685539720.pdb > /var/tmp/scwrl_1685539720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1685539720.pdb Number of alignments=545 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t04-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMI 1hzgA 747 :SSTRQRAIYPYF T0287 13 :ADSKDKKEKLIESLQENELLN 1hzgA 760 :AANADEQQPLFFYIKKDRFDN T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 850 :VQEGKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 985 :NVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4052 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_499847999.pdb -s /var/tmp/to_scwrl_499847999.seq -o /var/tmp/from_scwrl_499847999.pdb > /var/tmp/scwrl_499847999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_499847999.pdb Number of alignments=546 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 2 :SNNMRKL 1hzgA 726 :KSNFQKL T0287 9 :FS 1hzgA 755 :YP T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 1hzgA 758 :FEAANADEQQPLFFYIKKDRFDNHGYDQYFYDN T0287 44 :IKTMHDF 1hzgA 797 :IPTLNTY T0287 51 :FKQM 1hzgA 819 :WKKY T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQN 1hzgA 985 :NVVVRSLSESYSLNADASEISVLK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4061 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_425819324.pdb -s /var/tmp/to_scwrl_425819324.seq -o /var/tmp/from_scwrl_425819324.pdb > /var/tmp/scwrl_425819324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_425819324.pdb Number of alignments=547 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MS 1hzgA 720 :SI T0287 24 :ES 1hzgA 722 :ES T0287 56 :TNKGALDKVLRNYM 1hzgA 724 :TSKSNFQKLSRGNI T0287 82 :DKFK 1hzgA 738 :DVLK T0287 105 :NPNFLFSKFDRSILGIFLP 1hzgA 742 :GRGSISSTRQRAIYPYFEA T0287 126 :SKPIMFKMSIREMDSQ 1hzgA 766 :QQPLFFYIKKDRFDNH T0287 145 :Y 1hzgA 788 :Y T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 794 :PNGIPTLNTYTGEIPSDSSSLGSTYWKKYN T0287 187 :L 1hzgA 824 :L Number of specific fragments extracted= 9 number of extra gaps= 0 total=4070 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_97715880.pdb -s /var/tmp/to_scwrl_97715880.seq -o /var/tmp/from_scwrl_97715880.pdb > /var/tmp/scwrl_97715880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_97715880.pdb Number of alignments=548 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :M 1hzgA 720 :S T0287 15 :SKDKKEKLIESLQENEL 1hzgA 721 :IESTSKSNFQKLSRGNI T0287 81 :VDKFKK 1hzgA 775 :KDRFDN T0287 105 :NPNFLFSKFDRSILGIFLPFF 1hzgA 784 :DQYFYDNTVGPNGIPTLNTYT T0287 131 :FKMSIREMDSQ 1hzgA 843 :IKIALEEVQEG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 877 :IYKVHTGTTKSLAGFTSTTGVKKAV T0287 177 :YVRDLLMKFD 1hzgA 902 :EVLELLTKEP T0287 187 :LEKYMKEK 1hzgA 924 :LVDYLSEN Number of specific fragments extracted= 8 number of extra gaps= 0 total=4078 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1297287765.pdb -s /var/tmp/to_scwrl_1297287765.seq -o /var/tmp/from_scwrl_1297287765.pdb > /var/tmp/scwrl_1297287765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1297287765.pdb Number of alignments=549 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t04-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=4081 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_288548817.pdb -s /var/tmp/to_scwrl_288548817.seq -o /var/tmp/from_scwrl_288548817.pdb > /var/tmp/scwrl_288548817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_288548817.pdb Number of alignments=550 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 853 :GKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4084 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2108906616.pdb -s /var/tmp/to_scwrl_2108906616.seq -o /var/tmp/from_scwrl_2108906616.pdb > /var/tmp/scwrl_2108906616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108906616.pdb Number of alignments=551 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4084 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 92 :ESETMELLHAIAE 1hzgA 722 :ESTSKSNFQKLSR T0287 105 :NPNFLFSKF 1hzgA 736 :NIDVLKGRG T0287 114 :DRSILGIFLPF 1hzgA 748 :STRQRAIYPYF T0287 125 :FSKPIMFKMSIREMDSQ 1hzgA 765 :EQQPLFFYIKKDRFDNH T0287 143 :ELYGTNLPLLKLFV 1hzgA 791 :TVGPNGIPTLNTYT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4089 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1997353799.pdb -s /var/tmp/to_scwrl_1997353799.seq -o /var/tmp/from_scwrl_1997353799.pdb > /var/tmp/scwrl_1997353799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1997353799.pdb Number of alignments=552 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t06-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMI 1hzgA 747 :SSTRQRAIYPYF T0287 13 :ADSKDKKEKLIESLQENELLN 1hzgA 760 :AANADEQQPLFFYIKKDRFDN T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 850 :VQEGKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 985 :NVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4095 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1854713115.pdb -s /var/tmp/to_scwrl_1854713115.seq -o /var/tmp/from_scwrl_1854713115.pdb > /var/tmp/scwrl_1854713115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1854713115.pdb Number of alignments=553 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 2 :SNNMRKL 1hzgA 726 :KSNFQKL T0287 9 :FS 1hzgA 755 :YP T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 1hzgA 758 :FEAANADEQQPLFFYIKKDRFDNHGYDQYFYDN T0287 44 :IKTMHDF 1hzgA 797 :IPTLNTY T0287 51 :FKQM 1hzgA 819 :WKKY T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQN 1hzgA 985 :NVVVRSLSESYSLNADASEISVLK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4104 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1706398480.pdb -s /var/tmp/to_scwrl_1706398480.seq -o /var/tmp/from_scwrl_1706398480.pdb > /var/tmp/scwrl_1706398480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706398480.pdb Number of alignments=554 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MS 1hzgA 720 :SI T0287 24 :ES 1hzgA 722 :ES T0287 56 :TNKGALDKVLRNYM 1hzgA 724 :TSKSNFQKLSRGNI T0287 82 :DKFK 1hzgA 738 :DVLK T0287 105 :NPNFLFSKFDRSILGIFLP 1hzgA 742 :GRGSISSTRQRAIYPYFEA T0287 126 :SKPIMFKMSIREMDSQ 1hzgA 766 :QQPLFFYIKKDRFDNH T0287 145 :Y 1hzgA 788 :Y T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 794 :PNGIPTLNTYTGEIPSDSSSLGSTYWKKYN T0287 187 :L 1hzgA 824 :L Number of specific fragments extracted= 9 number of extra gaps= 0 total=4113 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1967468788.pdb -s /var/tmp/to_scwrl_1967468788.seq -o /var/tmp/from_scwrl_1967468788.pdb > /var/tmp/scwrl_1967468788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1967468788.pdb Number of alignments=555 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :M 1hzgA 720 :S T0287 15 :SKDKKEKLIESLQENEL 1hzgA 721 :IESTSKSNFQKLSRGNI T0287 81 :VDKFKK 1hzgA 775 :KDRFDN T0287 105 :NPNFLFSKFDRSILGIFLPFF 1hzgA 784 :DQYFYDNTVGPNGIPTLNTYT T0287 131 :FKMSIREMDSQ 1hzgA 843 :IKIALEEVQEG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 877 :IYKVHTGTTKSLAGFTSTTGVKKAV T0287 177 :YVRDLLMKFD 1hzgA 902 :EVLELLTKEP T0287 187 :LEKYMKEK 1hzgA 924 :LVDYLSEN Number of specific fragments extracted= 8 number of extra gaps= 0 total=4121 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_841154292.pdb -s /var/tmp/to_scwrl_841154292.seq -o /var/tmp/from_scwrl_841154292.pdb > /var/tmp/scwrl_841154292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_841154292.pdb Number of alignments=556 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t06-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=4124 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1983722865.pdb -s /var/tmp/to_scwrl_1983722865.seq -o /var/tmp/from_scwrl_1983722865.pdb > /var/tmp/scwrl_1983722865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983722865.pdb Number of alignments=557 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 853 :GKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4127 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_766513904.pdb -s /var/tmp/to_scwrl_766513904.seq -o /var/tmp/from_scwrl_766513904.pdb > /var/tmp/scwrl_766513904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_766513904.pdb Number of alignments=558 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4127 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 92 :ESETMELLHAIAE 1hzgA 722 :ESTSKSNFQKLSR T0287 105 :NPNFLFSKF 1hzgA 736 :NIDVLKGRG T0287 114 :DRSILGIFLPF 1hzgA 748 :STRQRAIYPYF T0287 125 :FSKPIMFKMSIREMDSQ 1hzgA 765 :EQQPLFFYIKKDRFDNH T0287 143 :ELYGTNLPLLKLFV 1hzgA 791 :TVGPNGIPTLNTYT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4132 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_380016500.pdb -s /var/tmp/to_scwrl_380016500.seq -o /var/tmp/from_scwrl_380016500.pdb > /var/tmp/scwrl_380016500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_380016500.pdb Number of alignments=559 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t2k-global-adpstyle1.a2m # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMI 1hzgA 747 :SSTRQRAIYPYF T0287 13 :ADSKDKKEKLIESLQENELLN 1hzgA 760 :AANADEQQPLFFYIKKDRFDN T0287 34 :TDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 850 :VQEGKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQNA 1hzgA 985 :NVVVRSLSESYSLNADASEISVLKV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4138 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1188182180.pdb -s /var/tmp/to_scwrl_1188182180.seq -o /var/tmp/from_scwrl_1188182180.pdb > /var/tmp/scwrl_1188182180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188182180.pdb Number of alignments=560 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-global-adpstyle5.a2m # found chain 1hzgA in template set T0287 2 :SNNMRKL 1hzgA 726 :KSNFQKL T0287 9 :FS 1hzgA 755 :YP T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 1hzgA 758 :FEAANADEQQPLFFYIKKDRFDNHGYDQYFYDN T0287 44 :IKTMHDF 1hzgA 797 :IPTLNTY T0287 51 :FKQM 1hzgA 819 :WKKY T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQY 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLVRV T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQN 1hzgA 985 :NVVVRSLSESYSLNADASEISVLK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4147 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1164024384.pdb -s /var/tmp/to_scwrl_1164024384.seq -o /var/tmp/from_scwrl_1164024384.pdb > /var/tmp/scwrl_1164024384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164024384.pdb Number of alignments=561 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :MSNNMR 1hzgA 720 :SIESTS T0287 58 :KGALDKVLRNY 1hzgA 726 :KSNFQKLSRGN T0287 81 :VDKFK 1hzgA 737 :IDVLK T0287 105 :NPNFLFSKFDRSILGIFLPF 1hzgA 742 :GRGSISSTRQRAIYPYFEAA T0287 126 :SKPIMFKMSIREMDSQ 1hzgA 766 :QQPLFFYIKKDRFDNH T0287 142 :IELYGTNLPLLKLFVMTDEEVNFYANL 1hzgA 788 :YDNTVGPNGIPTLNTYTGEIPSDSSSL T0287 169 :KTIEQYN 1hzgA 817 :TYWKKYN T0287 187 :L 1hzgA 824 :L Number of specific fragments extracted= 8 number of extra gaps= 0 total=4155 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_386672803.pdb -s /var/tmp/to_scwrl_386672803.seq -o /var/tmp/from_scwrl_386672803.pdb > /var/tmp/scwrl_386672803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_386672803.pdb Number of alignments=562 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 1 :M 1hzgA 720 :S T0287 15 :SKDKKEKLIESLQENEL 1hzgA 721 :IESTSKSNFQKLSRGNI T0287 81 :VDKFKK 1hzgA 775 :KDRFDN T0287 105 :NPNFLFSKFDRSILGIFLPFF 1hzgA 784 :DQYFYDNTVGPNGIPTLNTYT T0287 131 :FKMSIREMDSQ 1hzgA 843 :IKIALEEVQEG T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYN 1hzgA 877 :IYKVHTGTTKSLAGFTSTTGVKKAV T0287 177 :YVRDLLMKFD 1hzgA 902 :EVLELLTKEP T0287 187 :LEKYMKEK 1hzgA 924 :LVDYLSEN Number of specific fragments extracted= 8 number of extra gaps= 0 total=4163 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2019451446.pdb -s /var/tmp/to_scwrl_2019451446.seq -o /var/tmp/from_scwrl_2019451446.pdb > /var/tmp/scwrl_2019451446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2019451446.pdb Number of alignments=563 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-adpstyle1.a2m # 1hzgA read from T0287-1hzgA-t2k-local-adpstyle1.a2m # found chain 1hzgA in template set T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 874 :EGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 107 :NFLFSKFDRSI 1hzgA 926 :DYLSENFEDSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNF 1hzgA 937 :ITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=4166 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1782563046.pdb -s /var/tmp/to_scwrl_1782563046.seq -o /var/tmp/from_scwrl_1782563046.pdb > /var/tmp/scwrl_1782563046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782563046.pdb Number of alignments=564 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-local-adpstyle5.a2m # found chain 1hzgA in template set T0287 37 :KKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1hzgA 853 :GKPVIITSGNLSGSTTIVARKEGYIYKVHTGTTKSLAGFTSTTGVKKAVEVLELLTKEPIPRVEGIMSND T0287 108 :FLFSKFDR 1hzgA 923 :FLVDYLSE T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1hzgA 931 :NFEDSLITYSSSEKKPDSQITIIRDNVSVFPYFLDNIPEHGFGTSATVLV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4169 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_527642359.pdb -s /var/tmp/to_scwrl_527642359.seq -o /var/tmp/from_scwrl_527642359.pdb > /var/tmp/scwrl_527642359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_527642359.pdb Number of alignments=565 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1hzgA in template set T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFV 1hzgA 938 :TYSSSEKKPDSQITIIRDNVSVFPYFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4170 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_98277282.pdb -s /var/tmp/to_scwrl_98277282.seq -o /var/tmp/from_scwrl_98277282.pdb > /var/tmp/scwrl_98277282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_98277282.pdb Number of alignments=566 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hzgA read from T0287-1hzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hzgA in template set T0287 92 :ESETMELLHAIAE 1hzgA 722 :ESTSKSNFQKLSR T0287 105 :NPNFLFSKF 1hzgA 736 :NIDVLKGRG T0287 114 :DRSILGIFLPF 1hzgA 748 :STRQRAIYPYF T0287 125 :FSKPIMFKMSIREMDSQ 1hzgA 765 :EQQPLFFYIKKDRFDNH T0287 143 :ELYGTNLPLLKLFV 1hzgA 791 :TVGPNGIPTLNTYT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4175 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1252754712.pdb -s /var/tmp/to_scwrl_1252754712.seq -o /var/tmp/from_scwrl_1252754712.pdb > /var/tmp/scwrl_1252754712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1252754712.pdb Number of alignments=567 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1hzgA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1hzgA-t2k-muscle.a2m.gz # 1hzgA read from T0287-1hzgA-t2k-muscle.a2m.gz # found chain 1hzgA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQEN 1hzgA 725 :SKSNFQKLSRGNIDVLKGRGSISSTRQRA T0287 30 :ELLNTDEKKKI 1hzgA 759 :EAANADEQQPL T0287 43 :QIKTMHDFFKQMHTNKGALDKV 1hzgA 770 :FFYIKKDRFDNHGYDQYFYDNT T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMEL 1hzgA 800 :LNTYTGEIPSDSSSLGSTYWKKYNLTNETSIIRV T0287 99 :LHAIAENPNFLFS 1hzgA 847 :LEEVQEGKPVIIT T0287 114 :DRSILGIFLPFFSKPIMFKMSIREMDSQIELY 1hzgA 860 :SGNLSGSTTIVARKEGYIYKVHTGTTKSLAGF T0287 146 :GTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1hzgA 896 :GVKKAVEVLELLTKEPIPRVEGIMSNDFLVDYLSENFED T0287 186 :DLEKYMKEKGVQNA 1hzgA 935 :SLITYSSSEKKPDS Number of specific fragments extracted= 8 number of extra gaps= 0 total=4183 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1381484291.pdb -s /var/tmp/to_scwrl_1381484291.seq -o /var/tmp/from_scwrl_1381484291.pdb > /var/tmp/scwrl_1381484291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1381484291.pdb Number of alignments=568 # command:# Prefix for input files set to 1josA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-global-adpstyle1.a2m # 1josA read from 1josA-T0287-t04-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)F121 because last residue in template chain is (1josA)M106 T0287 16 :KDKKEKLIESLQENELLN 1josA 8 :SDRVAQEIQKEIAVILQR T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 26 :EVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLF 1josA 88 :LRIVPEIRF T0287 112 :KFDRSILGI 1josA 97 :IYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=4187 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_331430679.pdb -s /var/tmp/to_scwrl_331430679.seq -o /var/tmp/from_scwrl_331430679.pdb > /var/tmp/scwrl_331430679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_331430679.pdb Number of alignments=569 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-global-adpstyle5.a2m # 1josA read from 1josA-T0287-t04-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)F121 because last residue in template chain is (1josA)M106 T0287 19 :K 1josA 8 :S T0287 20 :EKLIESLQE 1josA 17 :KEIAVILQR T0287 30 :ELLNTDEKKKIIDQIKTMHDF 1josA 26 :EVKDPRIGMVTVSDVEVSSDL T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1josA 47 :SYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIV T0287 112 :KFDRSILGI 1josA 97 :IYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4192 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_344591049.pdb -s /var/tmp/to_scwrl_344591049.seq -o /var/tmp/from_scwrl_344591049.pdb > /var/tmp/scwrl_344591049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_344591049.pdb Number of alignments=570 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-local-adpstyle1.a2m # 1josA read from 1josA-T0287-t04-local-adpstyle1.a2m # found chain 1josA in training set T0287 7 :KLFSMIADSKDKK 1josA 50 :KIFVTFLFDHDEM T0287 20 :EKLIESLQENE 1josA 65 :EQGMKGLEKAS Number of specific fragments extracted= 2 number of extra gaps= 0 total=4194 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1022666572.pdb -s /var/tmp/to_scwrl_1022666572.seq -o /var/tmp/from_scwrl_1022666572.pdb > /var/tmp/scwrl_1022666572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1022666572.pdb Number of alignments=571 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t04-local-adpstyle5.a2m # 1josA read from 1josA-T0287-t04-local-adpstyle5.a2m # found chain 1josA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4194 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-global-adpstyle1.a2m # 1josA read from 1josA-T0287-t06-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)F121 because last residue in template chain is (1josA)M106 T0287 16 :KDKKEKLIESLQENELLN 1josA 8 :SDRVAQEIQKEIAVILQR T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 26 :EVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLFS 1josA 88 :LRIVPEIRFI T0287 113 :FDRSILGI 1josA 98 :YDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=4198 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_973040186.pdb -s /var/tmp/to_scwrl_973040186.seq -o /var/tmp/from_scwrl_973040186.pdb > /var/tmp/scwrl_973040186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973040186.pdb Number of alignments=572 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-global-adpstyle5.a2m # 1josA read from 1josA-T0287-t06-global-adpstyle5.a2m # found chain 1josA in training set T0287 19 :KEKLIESLQE 1josA 8 :SDRVAQEIQK T0287 60 :ALDKVLRNYMKDYRA 1josA 18 :EIAVILQREVKDPRI T0287 77 :KSIGVDKFK 1josA 33 :GMVTVSDVE T0287 114 :DRSILGIFLPFFSKP 1josA 45 :DLSYAKIFVTFLFDH T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLK 1josA 60 :DEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIR Number of specific fragments extracted= 5 number of extra gaps= 0 total=4203 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1527572796.pdb -s /var/tmp/to_scwrl_1527572796.seq -o /var/tmp/from_scwrl_1527572796.pdb > /var/tmp/scwrl_1527572796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527572796.pdb Number of alignments=573 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-local-adpstyle1.a2m # 1josA read from 1josA-T0287-t06-local-adpstyle1.a2m # found chain 1josA in training set T0287 148 :NLPLLKLFVMT 1josA 45 :DLSYAKIFVTF T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1josA 59 :HDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=4205 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1674630257.pdb -s /var/tmp/to_scwrl_1674630257.seq -o /var/tmp/from_scwrl_1674630257.pdb > /var/tmp/scwrl_1674630257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1674630257.pdb Number of alignments=574 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t06-local-adpstyle5.a2m # 1josA read from 1josA-T0287-t06-local-adpstyle5.a2m # found chain 1josA in training set T0287 152 :LKLFVMT 1josA 49 :AKIFVTF T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMK 1josA 59 :HDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=4207 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_58249266.pdb -s /var/tmp/to_scwrl_58249266.seq -o /var/tmp/from_scwrl_58249266.pdb > /var/tmp/scwrl_58249266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58249266.pdb Number of alignments=575 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-global-adpstyle1.a2m # 1josA read from 1josA-T0287-t2k-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)I120 because last residue in template chain is (1josA)M106 T0287 1 :MSNNMRKLFSMIADSK 1josA 11 :VAQEIQKEIAVILQRE T0287 40 :IIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 27 :VKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLFSKFDRSILG 1josA 88 :LRIVPEIRFIYDQSLVEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=4210 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1065628870.pdb -s /var/tmp/to_scwrl_1065628870.seq -o /var/tmp/from_scwrl_1065628870.pdb > /var/tmp/scwrl_1065628870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1065628870.pdb Number of alignments=576 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-global-adpstyle5.a2m # 1josA read from 1josA-T0287-t2k-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)I120 because last residue in template chain is (1josA)M106 T0287 2 :SN 1josA 8 :SD T0287 4 :NMRKLFSMIA 1josA 14 :EIQKEIAVIL T0287 15 :SK 1josA 25 :RE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1josA 33 :GMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMR T0287 102 :IAENPNFLFSKFDRSILG 1josA 88 :LRIVPEIRFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4215 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_26994609.pdb -s /var/tmp/to_scwrl_26994609.seq -o /var/tmp/from_scwrl_26994609.pdb > /var/tmp/scwrl_26994609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_26994609.pdb Number of alignments=577 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-local-adpstyle1.a2m # 1josA read from 1josA-T0287-t2k-local-adpstyle1.a2m # found chain 1josA in training set T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4216 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_484068590.pdb -s /var/tmp/to_scwrl_484068590.seq -o /var/tmp/from_scwrl_484068590.pdb > /var/tmp/scwrl_484068590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484068590.pdb Number of alignments=578 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1josA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1josA-T0287-t2k-local-adpstyle5.a2m # 1josA read from 1josA-T0287-t2k-local-adpstyle5.a2m # found chain 1josA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4216 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-simplesw-adpstyle1.a2m # 1josA read from T0287-1josA-simplesw-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4217 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1163344749.pdb -s /var/tmp/to_scwrl_1163344749.seq -o /var/tmp/from_scwrl_1163344749.pdb > /var/tmp/scwrl_1163344749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1163344749.pdb Number of alignments=579 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-simplesw-adpstyle5.a2m # 1josA read from T0287-1josA-simplesw-adpstyle5.a2m # found chain 1josA in training set T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 51 :IFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4218 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1324282374.pdb -s /var/tmp/to_scwrl_1324282374.seq -o /var/tmp/from_scwrl_1324282374.pdb > /var/tmp/scwrl_1324282374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324282374.pdb Number of alignments=580 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-adpstyle1.a2m # 1josA read from T0287-1josA-t04-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIADSKDKKEKLIE 1josA 8 :SDRVAQEIQKEIAVILQ T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 25 :REVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=4222 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_772617407.pdb -s /var/tmp/to_scwrl_772617407.seq -o /var/tmp/from_scwrl_772617407.pdb > /var/tmp/scwrl_772617407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772617407.pdb Number of alignments=581 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-adpstyle5.a2m # 1josA read from T0287-1josA-t04-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIA 1josA 8 :SDRVAQ T0287 15 :S 1josA 14 :E T0287 19 :KEKLIESLQENELLNTDEKKKIIDQ 1josA 15 :IQKEIAVILQREVKDPRIGMVTVSD T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 40 :VEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4228 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1124767718.pdb -s /var/tmp/to_scwrl_1124767718.seq -o /var/tmp/from_scwrl_1124767718.pdb > /var/tmp/scwrl_1124767718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1124767718.pdb Number of alignments=582 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNY 1josA 8 :SDRVAQEI T0287 92 :ESETMELLHAIAENPNFL 1josA 16 :QKEIAVILQREVKDPRIG T0287 127 :KPIM 1josA 34 :MVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEKGV 1josA 85 :AMRLRIV Number of specific fragments extracted= 7 number of extra gaps= 0 total=4235 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1174152526.pdb -s /var/tmp/to_scwrl_1174152526.seq -o /var/tmp/from_scwrl_1174152526.pdb > /var/tmp/scwrl_1174152526.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1174152526.pdb Number of alignments=583 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYRA 1josA 8 :SDRVAQEIQKEIAV T0287 98 :LLHAIAENPNF 1josA 22 :ILQREVKDPRI T0287 126 :SKPIM 1josA 33 :GMVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEK 1josA 85 :AMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=4242 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_479846876.pdb -s /var/tmp/to_scwrl_479846876.seq -o /var/tmp/from_scwrl_479846876.pdb > /var/tmp/scwrl_479846876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_479846876.pdb Number of alignments=584 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-adpstyle1.a2m # 1josA read from T0287-1josA-t04-local-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4243 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_683682552.pdb -s /var/tmp/to_scwrl_683682552.seq -o /var/tmp/from_scwrl_683682552.pdb > /var/tmp/scwrl_683682552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_683682552.pdb Number of alignments=585 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-adpstyle5.a2m # 1josA read from T0287-1josA-t04-local-adpstyle5.a2m # found chain 1josA in training set T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 50 :KIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4244 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_994137668.pdb -s /var/tmp/to_scwrl_994137668.seq -o /var/tmp/from_scwrl_994137668.pdb > /var/tmp/scwrl_994137668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994137668.pdb Number of alignments=586 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFLF 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIGM T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4249 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1321001167.pdb -s /var/tmp/to_scwrl_1321001167.seq -o /var/tmp/from_scwrl_1321001167.pdb > /var/tmp/scwrl_1321001167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1321001167.pdb Number of alignments=587 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=4255 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_519921770.pdb -s /var/tmp/to_scwrl_519921770.seq -o /var/tmp/from_scwrl_519921770.pdb > /var/tmp/scwrl_519921770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519921770.pdb Number of alignments=588 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-adpstyle1.a2m # 1josA read from T0287-1josA-t06-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIADSKDKKEKLIE 1josA 8 :SDRVAQEIQKEIAVILQ T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 25 :REVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=4259 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1760651571.pdb -s /var/tmp/to_scwrl_1760651571.seq -o /var/tmp/from_scwrl_1760651571.pdb > /var/tmp/scwrl_1760651571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1760651571.pdb Number of alignments=589 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-adpstyle5.a2m # 1josA read from T0287-1josA-t06-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIA 1josA 8 :SDRVAQ T0287 15 :S 1josA 14 :E T0287 19 :KEKLIESLQENELLNTDEKKKIIDQ 1josA 15 :IQKEIAVILQREVKDPRIGMVTVSD T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 40 :VEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4265 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1701017668.pdb -s /var/tmp/to_scwrl_1701017668.seq -o /var/tmp/from_scwrl_1701017668.pdb > /var/tmp/scwrl_1701017668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1701017668.pdb Number of alignments=590 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNY 1josA 8 :SDRVAQEI T0287 92 :ESETMELLHAIAENPNFL 1josA 16 :QKEIAVILQREVKDPRIG T0287 127 :KPIM 1josA 34 :MVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEKGV 1josA 85 :AMRLRIV Number of specific fragments extracted= 7 number of extra gaps= 0 total=4272 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1708103950.pdb -s /var/tmp/to_scwrl_1708103950.seq -o /var/tmp/from_scwrl_1708103950.pdb > /var/tmp/scwrl_1708103950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1708103950.pdb Number of alignments=591 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYRA 1josA 8 :SDRVAQEIQKEIAV T0287 98 :LLHAIAENPNF 1josA 22 :ILQREVKDPRI T0287 126 :SKPIM 1josA 33 :GMVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEK 1josA 85 :AMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=4279 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_777192310.pdb -s /var/tmp/to_scwrl_777192310.seq -o /var/tmp/from_scwrl_777192310.pdb > /var/tmp/scwrl_777192310.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_777192310.pdb Number of alignments=592 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-adpstyle1.a2m # 1josA read from T0287-1josA-t06-local-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4280 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2087690471.pdb -s /var/tmp/to_scwrl_2087690471.seq -o /var/tmp/from_scwrl_2087690471.pdb > /var/tmp/scwrl_2087690471.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087690471.pdb Number of alignments=593 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-adpstyle5.a2m # 1josA read from T0287-1josA-t06-local-adpstyle5.a2m # found chain 1josA in training set T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 50 :KIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4281 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1580071750.pdb -s /var/tmp/to_scwrl_1580071750.seq -o /var/tmp/from_scwrl_1580071750.pdb > /var/tmp/scwrl_1580071750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1580071750.pdb Number of alignments=594 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFLF 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIGM T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4286 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_412271709.pdb -s /var/tmp/to_scwrl_412271709.seq -o /var/tmp/from_scwrl_412271709.pdb > /var/tmp/scwrl_412271709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_412271709.pdb Number of alignments=595 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=4292 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_467849183.pdb -s /var/tmp/to_scwrl_467849183.seq -o /var/tmp/from_scwrl_467849183.pdb > /var/tmp/scwrl_467849183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467849183.pdb Number of alignments=596 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-adpstyle1.a2m # 1josA read from T0287-1josA-t2k-global-adpstyle1.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIADSKDKKEKLIE 1josA 8 :SDRVAQEIQKEIAVILQ T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 25 :REVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=4296 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1678349032.pdb -s /var/tmp/to_scwrl_1678349032.seq -o /var/tmp/from_scwrl_1678349032.pdb > /var/tmp/scwrl_1678349032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1678349032.pdb Number of alignments=597 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-global-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)T147 because last residue in template chain is (1josA)M106 T0287 8 :LFSMIA 1josA 8 :SDRVAQ T0287 15 :S 1josA 14 :E T0287 19 :KEKLIESLQENELLNTDEKKKIIDQ 1josA 15 :IQKEIAVILQREVKDPRIGMVTVSD T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKV 1josA 40 :VEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKP 1josA 75 :SPYIRSLLGKAMRLRIVP T0287 134 :SIREMDSQIELYG 1josA 93 :EIRFIYDQSLVEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4302 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1665026421.pdb -s /var/tmp/to_scwrl_1665026421.seq -o /var/tmp/from_scwrl_1665026421.pdb > /var/tmp/scwrl_1665026421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1665026421.pdb Number of alignments=598 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYR 1josA 8 :SDRVAQEIQKEIA T0287 97 :ELLHAIAENPNFL 1josA 21 :VILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEKGV 1josA 85 :AMRLRIV Number of specific fragments extracted= 8 number of extra gaps= 0 total=4310 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1849333474.pdb -s /var/tmp/to_scwrl_1849333474.seq -o /var/tmp/from_scwrl_1849333474.pdb > /var/tmp/scwrl_1849333474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1849333474.pdb Number of alignments=599 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set Warning: unaligning (T0287)N3 because first residue in template chain is (1josA)R7 T0287 61 :LDKVLRNYMKDYRA 1josA 8 :SDRVAQEIQKEIAV T0287 98 :LLHAIAENPNF 1josA 22 :ILQREVKDPRI T0287 126 :SKPIM 1josA 33 :GMVTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK T0287 190 :YMKEK 1josA 85 :AMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=4317 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2009779711.pdb -s /var/tmp/to_scwrl_2009779711.seq -o /var/tmp/from_scwrl_2009779711.pdb > /var/tmp/scwrl_2009779711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2009779711.pdb Number of alignments=600 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-adpstyle1.a2m # 1josA read from T0287-1josA-t2k-local-adpstyle1.a2m # found chain 1josA in training set T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 55 :FLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4318 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2009617471.pdb -s /var/tmp/to_scwrl_2009617471.seq -o /var/tmp/from_scwrl_2009617471.pdb > /var/tmp/scwrl_2009617471.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2009617471.pdb Number of alignments=601 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-local-adpstyle5.a2m # found chain 1josA in training set T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 50 :KIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4319 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_724516399.pdb -s /var/tmp/to_scwrl_724516399.seq -o /var/tmp/from_scwrl_724516399.pdb > /var/tmp/scwrl_724516399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724516399.pdb Number of alignments=602 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFLF 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIGM T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4324 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_835336250.pdb -s /var/tmp/to_scwrl_835336250.seq -o /var/tmp/from_scwrl_835336250.pdb > /var/tmp/scwrl_835336250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_835336250.pdb Number of alignments=603 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1josA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1josA read from T0287-1josA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1josA in training set T0287 84 :FKKVYRLLESETMELLHAIAENPNFL 1josA 8 :SDRVAQEIQKEIAVILQREVKDPRIG T0287 127 :K 1josA 34 :M T0287 133 :MSI 1josA 35 :VTV T0287 140 :SQIEL 1josA 38 :SDVEV T0287 146 :GTNLPLLKLFVM 1josA 43 :SSDLSYAKIFVT T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMK 1josA 58 :DHDEMAIEQGMKGLEKASPYIRSLLGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=4330 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1389706620.pdb -s /var/tmp/to_scwrl_1389706620.seq -o /var/tmp/from_scwrl_1389706620.pdb > /var/tmp/scwrl_1389706620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1389706620.pdb Number of alignments=604 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1josA-t04-muscle.a2m.gz # 1josA read from T0287-1josA-t04-muscle.a2m.gz # found chain 1josA in training set Warning: unaligning (T0287)K18 because first residue in template chain is (1josA)R7 T0287 19 :KEKLIESLQE 1josA 8 :SDRVAQEIQK T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKK 1josA 18 :EIAVILQREVKDPRIGMVTVSDVEVSS T0287 114 :DRSILGIFLPFFSKP 1josA 45 :DLSYAKIFVTFLFDH T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 1josA 60 :DEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEI T0287 189 :KYMKEKGVQNA 1josA 95 :RFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4335 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_251663009.pdb -s /var/tmp/to_scwrl_251663009.seq -o /var/tmp/from_scwrl_251663009.pdb > /var/tmp/scwrl_251663009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_251663009.pdb Number of alignments=605 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1josA-t06-muscle.a2m.gz # 1josA read from T0287-1josA-t06-muscle.a2m.gz # found chain 1josA in training set Warning: unaligning (T0287)K18 because first residue in template chain is (1josA)R7 Warning: unaligning (T0287)G195 because last residue in template chain is (1josA)M106 T0287 19 :KEKLIESLQE 1josA 8 :SDRVAQEIQK T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKK 1josA 18 :EIAVILQREVKDPRIGMVTVSDVEVSS T0287 114 :DRSILGIFLPFFSKP 1josA 45 :DLSYAKIFVTFLFDH T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 1josA 60 :DEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEI T0287 184 :KFDLEKYMKEK 1josA 95 :RFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4340 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_893585516.pdb -s /var/tmp/to_scwrl_893585516.seq -o /var/tmp/from_scwrl_893585516.pdb > /var/tmp/scwrl_893585516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_893585516.pdb Number of alignments=606 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1josA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1josA-t2k-muscle.a2m.gz # 1josA read from T0287-1josA-t2k-muscle.a2m.gz # found chain 1josA in training set T0287 1 :MSNNMRKLF 1josA 7 :RSDRVAQEI T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDF 1josA 16 :QKEIAVILQREVKDPRIGMVTVSDVEVSSDL T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESE 1josA 47 :SYAKIFVTFLFDHDEMAIEQGMKGLEKA T0287 111 :SKFDRSILGIFLPFFSKPIM 1josA 75 :SPYIRSLLGKAMRLRIVPEI T0287 189 :KYMKEKGVQNA 1josA 95 :RFIYDQSLVEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4345 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_307851843.pdb -s /var/tmp/to_scwrl_307851843.seq -o /var/tmp/from_scwrl_307851843.pdb > /var/tmp/scwrl_307851843.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_307851843.pdb Number of alignments=607 # command:# Prefix for input files set to 1knqA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-global-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t04-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)E193 because last residue in template chain is (1knqA)K173 T0287 1 :MSNN 1knqA 3 :TTNH T0287 5 :M 1knqA 9 :H T0287 6 :RKLFSMIADSKDKKEKLIESLQENELLNTDEKKKI 1knqA 30 :HQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 1knqA 97 :LLREGNPNLSFIYLKGDFDVIE T0287 165 :YANLKTIEQYNDYVRDLLMKF 1knqA 128 :FFKTQMLVTQFETLQEPGADE T0287 186 :DLEKYMK 1knqA 166 :STIEVIK Number of specific fragments extracted= 7 number of extra gaps= 0 total=4352 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_278657618.pdb -s /var/tmp/to_scwrl_278657618.seq -o /var/tmp/from_scwrl_278657618.pdb > /var/tmp/scwrl_278657618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_278657618.pdb Number of alignments=608 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-global-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t04-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)E193 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMI 1knqA 3 :TTNHDHHIYVLM T0287 20 :EKLIESLQ 1knqA 26 :SEVAHQLH T0287 29 :NELLNTDE 1knqA 34 :AAFLDGDF T0287 37 :KK 1knqA 62 :RK T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 1knqA 97 :LLREGNPNLSFIYLKGDFDVIE T0287 165 :YANLKTIEQYNDYVRDLLMKFD 1knqA 128 :FFKTQMLVTQFETLQEPGADET T0287 187 :LEKYMK 1knqA 167 :TIEVIK Number of specific fragments extracted= 8 number of extra gaps= 0 total=4360 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1377654106.pdb -s /var/tmp/to_scwrl_1377654106.seq -o /var/tmp/from_scwrl_1377654106.pdb > /var/tmp/scwrl_1377654106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377654106.pdb Number of alignments=609 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-local-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t04-local-adpstyle1.a2m # found chain 1knqA in template set T0287 49 :DFFKQMHTNKGALDKVLRNYMKDY 1knqA 41 :FLHPRRNIEKMASGEPLNDDDRKP T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEV 1knqA 97 :LLREGNPNLSFIYLKGDFDV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4363 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1471196593.pdb -s /var/tmp/to_scwrl_1471196593.seq -o /var/tmp/from_scwrl_1471196593.pdb > /var/tmp/scwrl_1471196593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1471196593.pdb Number of alignments=610 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t04-local-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t04-local-adpstyle5.a2m # found chain 1knqA in template set T0287 90 :LLESETMELLHAIAENPNFLFSKFDRSILGIF 1knqA 65 :WLQALNDAAFAMQRTNKVSLIVCSALKKHYRD T0287 143 :ELYGTNLPLLKLFVMTDEEVNFYA 1knqA 97 :LLREGNPNLSFIYLKGDFDVIESR T0287 167 :NL 1knqA 130 :KT Number of specific fragments extracted= 3 number of extra gaps= 0 total=4366 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1602939992.pdb -s /var/tmp/to_scwrl_1602939992.seq -o /var/tmp/from_scwrl_1602939992.pdb > /var/tmp/scwrl_1602939992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602939992.pdb Number of alignments=611 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-global-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t2k-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1knqA 30 :HQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP T0287 107 :NFLFSKFDRSILGIFLPFFSKPIMFK 1knqA 104 :NLSFIYLKGDFDVIESRLKARKGHFF T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1knqA 130 :KTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4369 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2787866.pdb -s /var/tmp/to_scwrl_2787866.seq -o /var/tmp/from_scwrl_2787866.pdb > /var/tmp/scwrl_2787866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2787866.pdb Number of alignments=612 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-global-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t2k-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 1 :MSNN 1knqA 5 :NHDH T0287 5 :MRKLFSMIADSKDKKEK 1knqA 29 :AHQLHAAFLDGDFLHPR T0287 22 :LIESLQENELLNTDEKKKII 1knqA 47 :NIEKMASGEPLNDDDRKPWL T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1knqA 71 :DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP T0287 107 :NFLFSKFDRSILGIFLPFFSKPIMFK 1knqA 104 :NLSFIYLKGDFDVIESRLKARKGHFF T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1knqA 130 :KTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 6 number of extra gaps= 0 total=4375 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_448480665.pdb -s /var/tmp/to_scwrl_448480665.seq -o /var/tmp/from_scwrl_448480665.pdb > /var/tmp/scwrl_448480665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_448480665.pdb Number of alignments=613 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-local-adpstyle1.a2m # 1knqA read from 1knqA-T0287-t2k-local-adpstyle1.a2m # found chain 1knqA in template set T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1knqA 26 :SEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4376 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_629608872.pdb -s /var/tmp/to_scwrl_629608872.seq -o /var/tmp/from_scwrl_629608872.pdb > /var/tmp/scwrl_629608872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_629608872.pdb Number of alignments=614 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1knqA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1knqA-T0287-t2k-local-adpstyle5.a2m # 1knqA read from 1knqA-T0287-t2k-local-adpstyle5.a2m # found chain 1knqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4376 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-simplesw-adpstyle1.a2m # 1knqA read from T0287-1knqA-simplesw-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4377 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_482634742.pdb -s /var/tmp/to_scwrl_482634742.seq -o /var/tmp/from_scwrl_482634742.pdb > /var/tmp/scwrl_482634742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482634742.pdb Number of alignments=615 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-simplesw-adpstyle5.a2m # 1knqA read from T0287-1knqA-simplesw-adpstyle5.a2m # found chain 1knqA in template set T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTM 1knqA 46 :RNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLE 1knqA 85 :IVCSALKKHYRDLL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4380 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1132163217.pdb -s /var/tmp/to_scwrl_1132163217.seq -o /var/tmp/from_scwrl_1132163217.pdb > /var/tmp/scwrl_1132163217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1132163217.pdb Number of alignments=616 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-adpstyle1.a2m # 1knqA read from T0287-1knqA-t04-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1knqA)K173 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1knqA 4 :TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 86 :VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1knqA 131 :TQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4383 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1623746539.pdb -s /var/tmp/to_scwrl_1623746539.seq -o /var/tmp/from_scwrl_1623746539.pdb > /var/tmp/scwrl_1623746539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623746539.pdb Number of alignments=617 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKDKK 1knqA 10 :IYVLMGVSGSGK T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR T0287 101 :AIAENPNFLFSKFDRSILGIFLPFF 1knqA 100 :EGNPNLSFIYLKGDFDVIESRLKAR T0287 127 :KPIMFK 1knqA 125 :KGHFFK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1knqA 133 :MLVTQFETLQEPGADETDVLVVD T0287 171 :IEQYNDYV 1knqA 156 :IDQPLEGV T0287 183 :MKFDLEKY 1knqA 164 :VASTIEVI T0287 196 :V 1knqA 172 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=4394 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1803635910.pdb -s /var/tmp/to_scwrl_1803635910.seq -o /var/tmp/from_scwrl_1803635910.pdb > /var/tmp/scwrl_1803635910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1803635910.pdb Number of alignments=618 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 68 :YMKDYRAVIKSIGVD 1knqA 90 :LKKHYRDLLREGNPN T0287 83 :KFKKVYRL 1knqA 113 :DFDVIESR T0287 102 :IAENPNFLFSKF 1knqA 121 :LKARKGHFFKTQ T0287 117 :ILGIFL 1knqA 133 :MLVTQF T0287 140 :SQIELYGTNLPLL 1knqA 139 :ETLQEPGADETDV T0287 154 :LFVMTDEE 1knqA 152 :LVVDIDQP T0287 171 :IEQYNDYVRDLLM 1knqA 160 :LEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4405 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1652084987.pdb -s /var/tmp/to_scwrl_1652084987.seq -o /var/tmp/from_scwrl_1652084987.pdb > /var/tmp/scwrl_1652084987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1652084987.pdb Number of alignments=619 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIK 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDK 1knqA 113 :DFDV T0287 98 :LLHAIAENPNFLFSK 1knqA 117 :IESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4416 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1236914464.pdb -s /var/tmp/to_scwrl_1236914464.seq -o /var/tmp/from_scwrl_1236914464.pdb > /var/tmp/scwrl_1236914464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1236914464.pdb Number of alignments=620 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-adpstyle1.a2m # 1knqA read from T0287-1knqA-t04-local-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4417 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1357169931.pdb -s /var/tmp/to_scwrl_1357169931.seq -o /var/tmp/from_scwrl_1357169931.pdb > /var/tmp/scwrl_1357169931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1357169931.pdb Number of alignments=621 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-local-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4420 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1212705291.pdb -s /var/tmp/to_scwrl_1212705291.seq -o /var/tmp/from_scwrl_1212705291.pdb > /var/tmp/scwrl_1212705291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1212705291.pdb Number of alignments=622 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 59 :GALDKVLRNY 1knqA 92 :KHYRDLLREG T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETME 1knqA 114 :FDVIESRLKARKGHFFKTQMLVTQFETLQ T0287 103 :AENPNFLFSKFDRSILG 1knqA 146 :ADETDVLVVDIDQPLEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4425 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2014106774.pdb -s /var/tmp/to_scwrl_2014106774.seq -o /var/tmp/from_scwrl_2014106774.pdb > /var/tmp/scwrl_2014106774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2014106774.pdb Number of alignments=623 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDKF 1knqA 113 :DFDVI T0287 99 :LHAIAENPNFLFSK 1knqA 118 :ESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4434 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1297376755.pdb -s /var/tmp/to_scwrl_1297376755.seq -o /var/tmp/from_scwrl_1297376755.pdb > /var/tmp/scwrl_1297376755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1297376755.pdb Number of alignments=624 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-adpstyle1.a2m # 1knqA read from T0287-1knqA-t06-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1knqA)K173 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1knqA 4 :TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 86 :VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1knqA 131 :TQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4437 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_645293395.pdb -s /var/tmp/to_scwrl_645293395.seq -o /var/tmp/from_scwrl_645293395.pdb > /var/tmp/scwrl_645293395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_645293395.pdb Number of alignments=625 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKDKK 1knqA 10 :IYVLMGVSGSGK T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR T0287 101 :AIAENPNFLFSKFDRSILGIFLPFF 1knqA 100 :EGNPNLSFIYLKGDFDVIESRLKAR T0287 127 :KPIMFK 1knqA 125 :KGHFFK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1knqA 133 :MLVTQFETLQEPGADETDVLVVD T0287 171 :IEQYNDYV 1knqA 156 :IDQPLEGV T0287 183 :MKFDLEKY 1knqA 164 :VASTIEVI T0287 196 :V 1knqA 172 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=4448 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_278894836.pdb -s /var/tmp/to_scwrl_278894836.seq -o /var/tmp/from_scwrl_278894836.pdb > /var/tmp/scwrl_278894836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_278894836.pdb Number of alignments=626 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 68 :YMKDYRAVIKSIGVD 1knqA 90 :LKKHYRDLLREGNPN T0287 83 :KFKKVYRL 1knqA 113 :DFDVIESR T0287 102 :IAENPNFLFSKF 1knqA 121 :LKARKGHFFKTQ T0287 117 :ILGIFL 1knqA 133 :MLVTQF T0287 140 :SQIELYGTNLPLL 1knqA 139 :ETLQEPGADETDV T0287 154 :LFVMTDEE 1knqA 152 :LVVDIDQP T0287 171 :IEQYNDYVRDLLM 1knqA 160 :LEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4459 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1765225938.pdb -s /var/tmp/to_scwrl_1765225938.seq -o /var/tmp/from_scwrl_1765225938.pdb > /var/tmp/scwrl_1765225938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765225938.pdb Number of alignments=627 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIK 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDK 1knqA 113 :DFDV T0287 98 :LLHAIAENPNFLFSK 1knqA 117 :IESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4470 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_176158780.pdb -s /var/tmp/to_scwrl_176158780.seq -o /var/tmp/from_scwrl_176158780.pdb > /var/tmp/scwrl_176158780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176158780.pdb Number of alignments=628 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-adpstyle1.a2m # 1knqA read from T0287-1knqA-t06-local-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4471 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1943921257.pdb -s /var/tmp/to_scwrl_1943921257.seq -o /var/tmp/from_scwrl_1943921257.pdb > /var/tmp/scwrl_1943921257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943921257.pdb Number of alignments=629 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-local-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4474 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1467075766.pdb -s /var/tmp/to_scwrl_1467075766.seq -o /var/tmp/from_scwrl_1467075766.pdb > /var/tmp/scwrl_1467075766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1467075766.pdb Number of alignments=630 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 59 :GALDKVLRNY 1knqA 92 :KHYRDLLREG T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETME 1knqA 114 :FDVIESRLKARKGHFFKTQMLVTQFETLQ T0287 103 :AENPNFLFSKFDRSILG 1knqA 146 :ADETDVLVVDIDQPLEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4479 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_38454845.pdb -s /var/tmp/to_scwrl_38454845.seq -o /var/tmp/from_scwrl_38454845.pdb > /var/tmp/scwrl_38454845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_38454845.pdb Number of alignments=631 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDKF 1knqA 113 :DFDVI T0287 99 :LHAIAENPNFLFSK 1knqA 118 :ESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4488 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1806055081.pdb -s /var/tmp/to_scwrl_1806055081.seq -o /var/tmp/from_scwrl_1806055081.pdb > /var/tmp/scwrl_1806055081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1806055081.pdb Number of alignments=632 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-adpstyle1.a2m # 1knqA read from T0287-1knqA-t2k-global-adpstyle1.a2m # found chain 1knqA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1knqA)K173 T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1knqA 4 :TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 86 :VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1knqA 131 :TQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4491 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_44108518.pdb -s /var/tmp/to_scwrl_44108518.seq -o /var/tmp/from_scwrl_44108518.pdb > /var/tmp/scwrl_44108518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44108518.pdb Number of alignments=633 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-global-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKDKK 1knqA 10 :IYVLMGVSGSGK T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR T0287 101 :AIAENPNFLFSKFDRSILGIFLPFF 1knqA 100 :EGNPNLSFIYLKGDFDVIESRLKAR T0287 127 :KPIMFK 1knqA 125 :KGHFFK T0287 133 :MSIREMDSQIELYGTNLPLLKLF 1knqA 133 :MLVTQFETLQEPGADETDVLVVD T0287 171 :IEQYNDYV 1knqA 156 :IDQPLEGV T0287 183 :MKFDLEKY 1knqA 164 :VASTIEVI T0287 196 :V 1knqA 172 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=4502 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_873791095.pdb -s /var/tmp/to_scwrl_873791095.seq -o /var/tmp/from_scwrl_873791095.pdb > /var/tmp/scwrl_873791095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_873791095.pdb Number of alignments=634 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)Q197 because last residue in template chain is (1knqA)K173 T0287 4 :NMRK 1knqA 4 :TNHD T0287 8 :LFSMIADSKD 1knqA 24 :VASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 68 :YMKDYRAVIKSIGVD 1knqA 90 :LKKHYRDLLREGNPN T0287 88 :Y 1knqA 109 :Y T0287 91 :LESETMELLHAIAENPNFLFSK 1knqA 110 :LKGDFDVIESRLKARKGHFFKT T0287 116 :SILGIF 1knqA 132 :QMLVTQ T0287 139 :DSQIELYGTNLPLL 1knqA 138 :FETLQEPGADETDV T0287 154 :LFVMTDEEV 1knqA 152 :LVVDIDQPL T0287 172 :EQYNDYVRDLLM 1knqA 161 :EGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4513 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1048278055.pdb -s /var/tmp/to_scwrl_1048278055.seq -o /var/tmp/from_scwrl_1048278055.pdb > /var/tmp/scwrl_1048278055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048278055.pdb Number of alignments=635 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)N3 because first residue in template chain is (1knqA)T3 Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 4 :N 1knqA 4 :T T0287 5 :MRKLFSMIADSKD 1knqA 21 :KSAVASEVAHQLH T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIK 1knqA 43 :HPRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDK 1knqA 113 :DFDV T0287 98 :LLHAIAENPNFLFSK 1knqA 117 :IESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=4524 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_295771528.pdb -s /var/tmp/to_scwrl_295771528.seq -o /var/tmp/from_scwrl_295771528.pdb > /var/tmp/scwrl_295771528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295771528.pdb Number of alignments=636 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-adpstyle1.a2m # 1knqA read from T0287-1knqA-t2k-local-adpstyle1.a2m # found chain 1knqA in template set T0287 23 :IESLQENELLNTDEKKKIIDQI 1knqA 48 :IEKMASGEPLNDDDRKPWLQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4525 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1767376611.pdb -s /var/tmp/to_scwrl_1767376611.seq -o /var/tmp/from_scwrl_1767376611.pdb > /var/tmp/scwrl_1767376611.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1767376611.pdb Number of alignments=637 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-local-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNKGAL 1knqA 73 :AFAMQRTNKVSL T0287 79 :IGVDKFKKVYRLLES 1knqA 85 :IVCSALKKHYRDLLR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4528 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1356129898.pdb -s /var/tmp/to_scwrl_1356129898.seq -o /var/tmp/from_scwrl_1356129898.pdb > /var/tmp/scwrl_1356129898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1356129898.pdb Number of alignments=638 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1knqA in template set T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 1knqA 45 :RRNIEKMASGEPLNDDDRKPWLQALNDA T0287 50 :FFKQMHTNK 1knqA 73 :AFAMQRTNK T0287 69 :MKDYRAVIKSI 1knqA 91 :KKHYRDLLREG T0287 105 :N 1knqA 102 :N Number of specific fragments extracted= 4 number of extra gaps= 0 total=4532 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_574429146.pdb -s /var/tmp/to_scwrl_574429146.seq -o /var/tmp/from_scwrl_574429146.pdb > /var/tmp/scwrl_574429146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574429146.pdb Number of alignments=639 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1knqA read from T0287-1knqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPWLQALN T0287 49 :DFFKQMHT 1knqA 71 :DAAFAMQR T0287 57 :NK 1knqA 80 :NK T0287 68 :YMKDYRAVIKSI 1knqA 90 :LKKHYRDLLREG T0287 80 :GVDKF 1knqA 113 :DFDVI T0287 99 :LHAIAENPNFLFSK 1knqA 118 :ESRLKARKGHFFKT T0287 116 :SIL 1knqA 132 :QML T0287 136 :REMDSQIELYGTNLPLLKLFVMTD 1knqA 135 :VTQFETLQEPGADETDVLVVDIDQ T0287 170 :TIEQYNDYVRDLLM 1knqA 159 :PLEGVVASTIEVIK Number of specific fragments extracted= 9 number of extra gaps= 0 total=4541 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_997547071.pdb -s /var/tmp/to_scwrl_997547071.seq -o /var/tmp/from_scwrl_997547071.pdb > /var/tmp/scwrl_997547071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_997547071.pdb Number of alignments=640 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1knqA-t04-muscle.a2m.gz # 1knqA read from T0287-1knqA-t04-muscle.a2m.gz # found chain 1knqA in template set Warning: unaligning (T0287)L187 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQE 1knqA 3 :TTNHDHHIYVLMGVSGSGKSAVASEVAH T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVI 1knqA 31 :QLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQA T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFD 1knqA 69 :LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4544 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_679842845.pdb -s /var/tmp/to_scwrl_679842845.seq -o /var/tmp/from_scwrl_679842845.pdb > /var/tmp/scwrl_679842845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_679842845.pdb Number of alignments=641 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1knqA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1knqA-t2k-muscle.a2m.gz # 1knqA read from T0287-1knqA-t2k-muscle.a2m.gz # found chain 1knqA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (1knqA)K173 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDE 1knqA 6 :HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF T0287 37 :KKKIIDQIKTMHDFFKQMHTNK 1knqA 44 :PRRNIEKMASGEPLNDDDRKPW T0287 59 :GALDKVLRNYMKDYRAVIKSIGVDK 1knqA 67 :QALNDAAFAMQRTNKVSLIVCSALK T0287 93 :SETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 1knqA 92 :KHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF T0287 141 :QIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLM 1knqA 130 :KTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4549 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_29885492.pdb -s /var/tmp/to_scwrl_29885492.seq -o /var/tmp/from_scwrl_29885492.pdb > /var/tmp/scwrl_29885492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29885492.pdb Number of alignments=642 # command:# Prefix for input files set to 1kobA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-global-adpstyle1.a2m # 1kobA read from 1kobA-T0287-t2k-global-adpstyle1.a2m # found chain 1kobA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTN 1kobA 74 :ATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL T0287 58 :KGALDKVLRNYM 1kobA 132 :GGELFDRIAAED T0287 70 :KD 1kobA 184 :TK T0287 72 :YRAVIKSIGVDKFKKVY 1kobA 188 :SSVKIIDFGLATKLNPD T0287 89 :RLLESETMELLHAIAENPNFLF 1kobA 249 :PFAGEDDLETLQNVKRCDWEFD T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1kobA 275 :SSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEYQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=4555 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1000334937.pdb -s /var/tmp/to_scwrl_1000334937.seq -o /var/tmp/from_scwrl_1000334937.pdb > /var/tmp/scwrl_1000334937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000334937.pdb Number of alignments=643 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-global-adpstyle5.a2m # 1kobA read from 1kobA-T0287-t2k-global-adpstyle5.a2m # found chain 1kobA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLN 1kobA 28 :KFYEDIWKKYVPQPVEVKQGSVYDYYDILEELG T0287 34 :TDEKKKIIDQIKT 1kobA 89 :PLDKYTVKNEISI T0287 47 :MHDFFKQM 1kobA 113 :LHDAFEDK T0287 55 :HT 1kobA 128 :EF T0287 57 :NKGALDKVLRNYM 1kobA 131 :SGGELFDRIAAED T0287 70 :KD 1kobA 184 :TK T0287 72 :YRAVIKSIGVDKFKKVY 1kobA 188 :SSVKIIDFGLATKLNPD T0287 91 :LESETMELLHAIAENPNFLF 1kobA 251 :AGEDDLETLQNVKRCDWEFD T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1kobA 275 :SSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEYQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=4564 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1128323509.pdb -s /var/tmp/to_scwrl_1128323509.seq -o /var/tmp/from_scwrl_1128323509.pdb > /var/tmp/scwrl_1128323509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128323509.pdb Number of alignments=644 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-local-adpstyle1.a2m # 1kobA read from 1kobA-T0287-t2k-local-adpstyle1.a2m # found chain 1kobA in template set T0287 75 :VIKSIGVDKFKKVYR 1kobA 55 :ILEELGSGAFGVVHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=4565 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kobA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1kobA-T0287-t2k-local-adpstyle5.a2m # 1kobA read from 1kobA-T0287-t2k-local-adpstyle5.a2m # found chain 1kobA in template set T0287 75 :VIKSIGVDKFKKVYRLLE 1kobA 55 :ILEELGSGAFGVVHRCVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4566 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tkiA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tkiA-T0287-fssp-global-adpstyle5.a2m # 1kobA read from 1tkiA-T0287-fssp-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1kobA)P177 T0287 13 :ADSKDKKEKL 1kobA 50 :YDYYDILEEL T0287 23 :IESLQEN 1kobA 81 :AKFINTP T0287 34 :TDEKKKIIDQIKTM 1kobA 89 :PLDKYTVKNEISIM T0287 48 :HDFFKQM 1kobA 114 :HDAFEDK T0287 60 :ALDKVLRNYMK 1kobA 121 :YEMVLILEFLS T0287 71 :DYRAVIKS 1kobA 134 :ELFDRIAA T0287 79 :IG 1kobA 146 :MS T0287 81 :VDKFKKVYRLLES 1kobA 152 :INYMRQACEGLKH T0287 94 :ETMELLHAIA 1kobA 166 :HEHSIVHLDI T0287 106 :PNFLFSKFDRSILGIFL 1kobA 178 :ENIMCETKKASSVKIID T0287 123 :PFFSKPIMFKMS 1kobA 199 :TKLNPDEIVKVT T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVNFYAN 1kobA 240 :GYVLLSGLSPFAGEDDLETLQNVKRCDWEFDED T0287 168 :L 1kobA 274 :F T0287 169 :K 1kobA 276 :S T0287 172 :EQYNDYVRDLLMKFD 1kobA 279 :PEAKDFIKNLLQKEP T0287 187 :LEKYMK 1kobA 307 :WLKGDH T0287 193 :EKGVQNA 1kobA 366 :DSYFDRK Number of specific fragments extracted= 17 number of extra gaps= 1 total=4583 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_659494364.pdb -s /var/tmp/to_scwrl_659494364.seq -o /var/tmp/from_scwrl_659494364.pdb > /var/tmp/scwrl_659494364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_659494364.pdb Number of alignments=645 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tkiA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tkiA-T0287-fssp-local-adpstyle5.a2m # 1kobA read from 1tkiA-T0287-fssp-local-adpstyle5.a2m # found chain 1kobA in template set T0287 73 :RAVIKSIGVD 1kobA 78 :VFVAKFINTP T0287 83 :KFKKVYRLLESETMELLH 1kobA 89 :PLDKYTVKNEISIMNQLH T0287 102 :IAENPNFLFSKFDRSILGIFLPFFS 1kobA 107 :HPKLINLHDAFEDKYEMVLILEFLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4586 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1482969679.pdb -s /var/tmp/to_scwrl_1482969679.seq -o /var/tmp/from_scwrl_1482969679.pdb > /var/tmp/scwrl_1482969679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482969679.pdb Number of alignments=646 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-simplesw-adpstyle1.a2m # 1kobA read from T0287-1kobA-simplesw-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4587 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_113003080.pdb -s /var/tmp/to_scwrl_113003080.seq -o /var/tmp/from_scwrl_113003080.pdb > /var/tmp/scwrl_113003080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_113003080.pdb Number of alignments=647 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-simplesw-adpstyle5.a2m # 1kobA read from T0287-1kobA-simplesw-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4589 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_135757257.pdb -s /var/tmp/to_scwrl_135757257.seq -o /var/tmp/from_scwrl_135757257.pdb > /var/tmp/scwrl_135757257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_135757257.pdb Number of alignments=648 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-adpstyle1.a2m # 1kobA read from T0287-1kobA-t04-global-adpstyle1.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNKG 1kobA 24 :NDYDKFYEDIWKKYVPQPV T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFD 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYT T0287 115 :RSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1kobA 96 :KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGL T0287 189 :KYMKEKGVQNA 1kobA 163 :KHMHEHSIVHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4593 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1139121942.pdb -s /var/tmp/to_scwrl_1139121942.seq -o /var/tmp/from_scwrl_1139121942.pdb > /var/tmp/scwrl_1139121942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139121942.pdb Number of alignments=649 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY T0287 114 :DRSILGIFLPFFSKPIMF 1kobA 119 :DKYEMVLILEFLSGGELF T0287 153 :KLFVMTDEEVNFYANL 1kobA 142 :EDYKMSEAEVINYMRQ T0287 170 :TIEQYNDYVRDLLMKFDL 1kobA 158 :ACEGLKHMHEHSIVHLDI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4598 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1765088068.pdb -s /var/tmp/to_scwrl_1765088068.seq -o /var/tmp/from_scwrl_1765088068.pdb > /var/tmp/scwrl_1765088068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765088068.pdb Number of alignments=650 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)L26 because first residue in template chain is (1kobA)I23 T0287 27 :QENELLNTDEKKKIIDQ 1kobA 24 :NDYDKFYEDIWKKYVPQ T0287 46 :TMHDF 1kobA 48 :SVYDY T0287 56 :T 1kobA 86 :T T0287 58 :KGALDK 1kobA 87 :PYPLDK T0287 64 :VLRNYMK 1kobA 94 :TVKNEIS T0287 75 :VIKSIGVDKFK 1kobA 135 :LFDRIAAEDYK T0287 86 :KVYRLLE 1kobA 150 :EVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 130 :MFKMS 1kobA 198 :ATKLN T0287 139 :DSQIELYGTNLPLL 1kobA 203 :PDEIVKVTTATAEF T0287 156 :VMTDEEVNFYANLKTI 1kobA 250 :FAGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 279 :PEAKDFIKNLLQK T0287 187 :LEKYMKEKGVQNA 1kobA 327 :IRQKIKEKYADWP Number of specific fragments extracted= 14 number of extra gaps= 0 total=4612 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1372671721.pdb -s /var/tmp/to_scwrl_1372671721.seq -o /var/tmp/from_scwrl_1372671721.pdb > /var/tmp/scwrl_1372671721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1372671721.pdb Number of alignments=651 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set T0287 3 :NNMRKLFSMIAD 1kobA 24 :NDYDKFYEDIWK T0287 25 :S 1kobA 36 :K T0287 26 :LQENELL 1kobA 39 :PQPVEVK T0287 33 :NTDE 1kobA 85 :NTPY T0287 38 :KKIIDQIKTMHDFFKQMHTNK 1kobA 89 :PLDKYTVKNEISIMNQLHHPK T0287 75 :VIKSIGVDKF 1kobA 135 :LFDRIAAEDY T0287 85 :KKVYRLLE 1kobA 149 :AEVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 157 :MTDEEVNFYANLKTI 1kobA 251 :AGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 275 :SSVSPEAKDFIKN T0287 185 :FDLEKYMKEKGVQNA 1kobA 297 :LTVHDALEHPWLKGD Number of specific fragments extracted= 14 number of extra gaps= 0 total=4626 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_348808227.pdb -s /var/tmp/to_scwrl_348808227.seq -o /var/tmp/from_scwrl_348808227.pdb > /var/tmp/scwrl_348808227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_348808227.pdb Number of alignments=652 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-adpstyle1.a2m # 1kobA read from T0287-1kobA-t04-local-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4627 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_830309713.pdb -s /var/tmp/to_scwrl_830309713.seq -o /var/tmp/from_scwrl_830309713.pdb > /var/tmp/scwrl_830309713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_830309713.pdb Number of alignments=653 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-local-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4629 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1239294848.pdb -s /var/tmp/to_scwrl_1239294848.seq -o /var/tmp/from_scwrl_1239294848.pdb > /var/tmp/scwrl_1239294848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239294848.pdb Number of alignments=654 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set T0287 114 :DRSILGIFLPFFSKPIMFKM 1kobA 27 :DKFYEDIWKKYVPQPVEVKQ T0287 134 :SIREMDSQIELYG 1kobA 48 :SVYDYYDILEELG T0287 147 :TNLPLLKLFVMTDEEVNFYANLK 1kobA 75 :TGRVFVAKFINTPYPLDKYTVKN Number of specific fragments extracted= 3 number of extra gaps= 0 total=4632 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1646184982.pdb -s /var/tmp/to_scwrl_1646184982.seq -o /var/tmp/from_scwrl_1646184982.pdb > /var/tmp/scwrl_1646184982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1646184982.pdb Number of alignments=655 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4632 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-adpstyle1.a2m # 1kobA read from T0287-1kobA-t06-global-adpstyle1.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNKG 1kobA 24 :NDYDKFYEDIWKKYVPQPV T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFD 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYT T0287 115 :RSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1kobA 96 :KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGL T0287 189 :KYMKEKGVQNA 1kobA 163 :KHMHEHSIVHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4636 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1475603107.pdb -s /var/tmp/to_scwrl_1475603107.seq -o /var/tmp/from_scwrl_1475603107.pdb > /var/tmp/scwrl_1475603107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475603107.pdb Number of alignments=656 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY T0287 114 :DRSILGIFLPFFSKPIMF 1kobA 119 :DKYEMVLILEFLSGGELF T0287 153 :KLFVMTDEEVNFYANL 1kobA 142 :EDYKMSEAEVINYMRQ T0287 170 :TIEQYNDYVRDLLMKFDL 1kobA 158 :ACEGLKHMHEHSIVHLDI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4641 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1518189684.pdb -s /var/tmp/to_scwrl_1518189684.seq -o /var/tmp/from_scwrl_1518189684.pdb > /var/tmp/scwrl_1518189684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518189684.pdb Number of alignments=657 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)L26 because first residue in template chain is (1kobA)I23 T0287 27 :QENELLNTDEKKKIIDQ 1kobA 24 :NDYDKFYEDIWKKYVPQ T0287 46 :TMHDF 1kobA 48 :SVYDY T0287 56 :T 1kobA 86 :T T0287 58 :KGALDK 1kobA 87 :PYPLDK T0287 64 :VLRNYMK 1kobA 94 :TVKNEIS T0287 75 :VIKSIGVDKFK 1kobA 135 :LFDRIAAEDYK T0287 86 :KVYRLLE 1kobA 150 :EVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 130 :MFKMS 1kobA 198 :ATKLN T0287 139 :DSQIELYGTNLPLL 1kobA 203 :PDEIVKVTTATAEF T0287 156 :VMTDEEVNFYANLKTI 1kobA 250 :FAGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 279 :PEAKDFIKNLLQK T0287 187 :LEKYMKEKGVQNA 1kobA 327 :IRQKIKEKYADWP Number of specific fragments extracted= 14 number of extra gaps= 0 total=4655 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1263927273.pdb -s /var/tmp/to_scwrl_1263927273.seq -o /var/tmp/from_scwrl_1263927273.pdb > /var/tmp/scwrl_1263927273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1263927273.pdb Number of alignments=658 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set T0287 3 :NNMRKLFSMIAD 1kobA 24 :NDYDKFYEDIWK T0287 25 :S 1kobA 36 :K T0287 26 :LQENELL 1kobA 39 :PQPVEVK T0287 33 :NTDE 1kobA 85 :NTPY T0287 38 :KKIIDQIKTMHDFFKQMHTNK 1kobA 89 :PLDKYTVKNEISIMNQLHHPK T0287 75 :VIKSIGVDKF 1kobA 135 :LFDRIAAEDY T0287 85 :KKVYRLLE 1kobA 149 :AEVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 157 :MTDEEVNFYANLKTI 1kobA 251 :AGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 275 :SSVSPEAKDFIKN T0287 185 :FDLEKYMKEKGVQNA 1kobA 297 :LTVHDALEHPWLKGD Number of specific fragments extracted= 14 number of extra gaps= 0 total=4669 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1651761887.pdb -s /var/tmp/to_scwrl_1651761887.seq -o /var/tmp/from_scwrl_1651761887.pdb > /var/tmp/scwrl_1651761887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1651761887.pdb Number of alignments=659 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-adpstyle1.a2m # 1kobA read from T0287-1kobA-t06-local-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4670 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1314627294.pdb -s /var/tmp/to_scwrl_1314627294.seq -o /var/tmp/from_scwrl_1314627294.pdb > /var/tmp/scwrl_1314627294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1314627294.pdb Number of alignments=660 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-local-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4672 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_583519393.pdb -s /var/tmp/to_scwrl_583519393.seq -o /var/tmp/from_scwrl_583519393.pdb > /var/tmp/scwrl_583519393.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583519393.pdb Number of alignments=661 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set T0287 114 :DRSILGIFLPFFSKPIMFKM 1kobA 27 :DKFYEDIWKKYVPQPVEVKQ T0287 134 :SIREMDSQIELYG 1kobA 48 :SVYDYYDILEELG T0287 147 :TNLPLLKLFVMTDEEVNFYANLK 1kobA 75 :TGRVFVAKFINTPYPLDKYTVKN Number of specific fragments extracted= 3 number of extra gaps= 0 total=4675 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1690216732.pdb -s /var/tmp/to_scwrl_1690216732.seq -o /var/tmp/from_scwrl_1690216732.pdb > /var/tmp/scwrl_1690216732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690216732.pdb Number of alignments=662 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4675 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-adpstyle1.a2m # 1kobA read from T0287-1kobA-t2k-global-adpstyle1.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNKG 1kobA 24 :NDYDKFYEDIWKKYVPQPV T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFD 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYT T0287 115 :RSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1kobA 96 :KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGL T0287 189 :KYMKEKGVQNA 1kobA 163 :KHMHEHSIVHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4679 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_973198730.pdb -s /var/tmp/to_scwrl_973198730.seq -o /var/tmp/from_scwrl_973198730.pdb > /var/tmp/scwrl_973198730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973198730.pdb Number of alignments=663 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-global-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY T0287 114 :DRSILGIFLPFFSKPIMF 1kobA 119 :DKYEMVLILEFLSGGELF T0287 153 :KLFVMTDEEVNFYANL 1kobA 142 :EDYKMSEAEVINYMRQ T0287 170 :TIEQYNDYVRDLLMKFDL 1kobA 158 :ACEGLKHMHEHSIVHLDI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4684 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_627627912.pdb -s /var/tmp/to_scwrl_627627912.seq -o /var/tmp/from_scwrl_627627912.pdb > /var/tmp/scwrl_627627912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_627627912.pdb Number of alignments=664 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)L26 because first residue in template chain is (1kobA)I23 T0287 27 :QENELLNTDEKKKIIDQ 1kobA 24 :NDYDKFYEDIWKKYVPQ T0287 56 :T 1kobA 86 :T T0287 58 :KGALDK 1kobA 87 :PYPLDK T0287 64 :VLRNYMKDY 1kobA 94 :TVKNEISIM T0287 75 :VIKSIGVDKFK 1kobA 135 :LFDRIAAEDYK T0287 86 :KVYRLLESET 1kobA 150 :EVINYMRQAC T0287 97 :ELLHAIAENP 1kobA 160 :EGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 156 :VMTDEEVNFYANLKTI 1kobA 250 :FAGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 279 :PEAKDFIKNLLQK T0287 185 :FDLEKYMKEKGV 1kobA 297 :LTVHDALEHPWL Number of specific fragments extracted= 13 number of extra gaps= 0 total=4697 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_416524181.pdb -s /var/tmp/to_scwrl_416524181.seq -o /var/tmp/from_scwrl_416524181.pdb > /var/tmp/scwrl_416524181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416524181.pdb Number of alignments=665 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set T0287 3 :NNMRKLFSMIAD 1kobA 24 :NDYDKFYEDIWK T0287 25 :S 1kobA 36 :K T0287 26 :LQENELL 1kobA 39 :PQPVEVK T0287 33 :NTDE 1kobA 85 :NTPY T0287 38 :KKIIDQIKTMHDFFKQMHTNK 1kobA 89 :PLDKYTVKNEISIMNQLHHPK T0287 75 :VIKSIGVDKF 1kobA 135 :LFDRIAAEDY T0287 85 :KKVYRLLE 1kobA 149 :AEVINYMR T0287 94 :ETMELLHAIAENP 1kobA 157 :QACEGLKHMHEHS T0287 107 :NFLFSKFDRSILGIFLPFF 1kobA 179 :NIMCETKKASSVKIIDFGL T0287 126 :SKPIMFKMSIREM 1kobA 204 :DEIVKVTTATAEF T0287 147 :TNLPL 1kobA 223 :DREPV T0287 157 :MTDEEVNFYANLKTI 1kobA 251 :AGEDDLETLQNVKRC T0287 172 :EQYNDYVRDLLMK 1kobA 275 :SSVSPEAKDFIKN T0287 185 :FDLEKYMKEKGVQNA 1kobA 297 :LTVHDALEHPWLKGD Number of specific fragments extracted= 14 number of extra gaps= 0 total=4711 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2021476784.pdb -s /var/tmp/to_scwrl_2021476784.seq -o /var/tmp/from_scwrl_2021476784.pdb > /var/tmp/scwrl_2021476784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021476784.pdb Number of alignments=666 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-adpstyle1.a2m # 1kobA read from T0287-1kobA-t2k-local-adpstyle1.a2m # found chain 1kobA in template set T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 43 :EVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=4712 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_923399440.pdb -s /var/tmp/to_scwrl_923399440.seq -o /var/tmp/from_scwrl_923399440.pdb > /var/tmp/scwrl_923399440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923399440.pdb Number of alignments=667 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-local-adpstyle5.a2m # found chain 1kobA in template set Warning: unaligning (T0287)I40 because first residue in template chain is (1kobA)I23 T0287 41 :IDQIKTMHDFFKQMHTNK 1kobA 24 :NDYDKFYEDIWKKYVPQP T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1kobA 42 :VEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4714 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_36417145.pdb -s /var/tmp/to_scwrl_36417145.seq -o /var/tmp/from_scwrl_36417145.pdb > /var/tmp/scwrl_36417145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_36417145.pdb Number of alignments=668 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1kobA in template set T0287 114 :DRSILGIFLPFFSKPIMFKM 1kobA 27 :DKFYEDIWKKYVPQPVEVKQ T0287 134 :SIREMDSQIELYG 1kobA 48 :SVYDYYDILEELG T0287 147 :TNLPLLKLFVMTDEEVNFYANLKTIE 1kobA 75 :TGRVFVAKFINTPYPLDKYTVKNEIS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4717 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1230123035.pdb -s /var/tmp/to_scwrl_1230123035.seq -o /var/tmp/from_scwrl_1230123035.pdb > /var/tmp/scwrl_1230123035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1230123035.pdb Number of alignments=669 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kobA read from T0287-1kobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1kobA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4717 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1kobA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1kobA-t2k-muscle.a2m.gz # 1kobA read from T0287-1kobA-t2k-muscle.a2m.gz # found chain 1kobA in template set Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE in next template residue (1kobA)P177 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE at template residue (1kobA)P177 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKK 1kobA 71 :VEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMR T0287 87 :VYRLLESETMELLHAIA 1kobA 159 :CEGLKHMHEHSIVHLDI T0287 106 :PNFLFSKF 1kobA 178 :ENIMCETK T0287 114 :DRSILGIF 1kobA 188 :SSVKIIDF T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTI 1kobA 213 :TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNV T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 1kobA 275 :SSVSPEAKDFIKNLLQKEPRKRLTVHDA Number of specific fragments extracted= 6 number of extra gaps= 1 total=4723 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1497828585.pdb -s /var/tmp/to_scwrl_1497828585.seq -o /var/tmp/from_scwrl_1497828585.pdb > /var/tmp/scwrl_1497828585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1497828585.pdb Number of alignments=670 # command:# Prefix for input files set to 1moh/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-global-adpstyle5.a2m # 1moh read from 1flp-T0287-fssp-global-adpstyle5.a2m # found chain 1moh in template set Warning: unaligning (T0287)M133 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKII 1moh 25 :GPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1moh 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1moh 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELL 1moh 100 :GISAGQLEAAFKVLSGFMKSYG T0287 114 :DRSILGIFLPFFSKPIMFK 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4728 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1033964216.pdb -s /var/tmp/to_scwrl_1033964216.seq -o /var/tmp/from_scwrl_1033964216.pdb > /var/tmp/scwrl_1033964216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033964216.pdb Number of alignments=671 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1flp-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1flp-T0287-fssp-local-adpstyle5.a2m # 1moh read from 1flp-T0287-fssp-local-adpstyle5.a2m # found chain 1moh in template set Warning: unaligning (T0287)M133 because last residue in template chain is (1moh)M142 T0287 21 :KLIESLQENELLNTDEKKKII 1moh 45 :GLFSGAAKGTVKNTPEMAAQA T0287 42 :DQIKTMHDFFKQM 1moh 67 :SFKGLVSNWVDNL T0287 56 :TNKGALDKVLRNYMKDYRAV 1moh 80 :DNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1moh 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 114 :DRSILGIFLPFFSKPIMFK 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4733 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1909965880.pdb -s /var/tmp/to_scwrl_1909965880.seq -o /var/tmp/from_scwrl_1909965880.pdb > /var/tmp/scwrl_1909965880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909965880.pdb Number of alignments=672 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-global-adpstyle1.a2m # 1moh read from 1moh-T0287-t2k-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)I129 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 25 :GPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1moh 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 3 number of extra gaps= 0 total=4736 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1527714077.pdb -s /var/tmp/to_scwrl_1527714077.seq -o /var/tmp/from_scwrl_1527714077.pdb > /var/tmp/scwrl_1527714077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527714077.pdb Number of alignments=673 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-global-adpstyle5.a2m # 1moh read from 1moh-T0287-t2k-global-adpstyle5.a2m # found chain 1moh in template set Warning: unaligning (T0287)I129 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 25 :GPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLESETMELLH 1moh 100 :GISAGQLEAAFKVLSGFMKSYGG T0287 110 :FSKFDRSILGIFLPFFSKP 1moh 123 :DEGAWTAVAGALMGEIEPD Number of specific fragments extracted= 3 number of extra gaps= 0 total=4739 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2034299152.pdb -s /var/tmp/to_scwrl_2034299152.seq -o /var/tmp/from_scwrl_2034299152.pdb > /var/tmp/scwrl_2034299152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2034299152.pdb Number of alignments=674 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-local-adpstyle1.a2m # 1moh read from 1moh-T0287-t2k-local-adpstyle1.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 29 :FMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLL 1moh 100 :GISAGQLEAAFKVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4741 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_890805744.pdb -s /var/tmp/to_scwrl_890805744.seq -o /var/tmp/from_scwrl_890805744.pdb > /var/tmp/scwrl_890805744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_890805744.pdb Number of alignments=675 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1moh-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1moh-T0287-t2k-local-adpstyle5.a2m # 1moh read from 1moh-T0287-t2k-local-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAV 1moh 29 :FMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKAR T0287 78 :SIGVDKFKKVYRLLE 1moh 100 :GISAGQLEAAFKVLS Number of specific fragments extracted= 2 number of extra gaps= 0 total=4743 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_39724795.pdb -s /var/tmp/to_scwrl_39724795.seq -o /var/tmp/from_scwrl_39724795.pdb > /var/tmp/scwrl_39724795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_39724795.pdb Number of alignments=676 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-simplesw-adpstyle1.a2m # 1moh read from T0287-1moh-simplesw-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4745 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1369785184.pdb -s /var/tmp/to_scwrl_1369785184.seq -o /var/tmp/from_scwrl_1369785184.pdb > /var/tmp/scwrl_1369785184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1369785184.pdb Number of alignments=677 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-simplesw-adpstyle5.a2m # 1moh read from T0287-1moh-simplesw-adpstyle5.a2m # found chain 1moh in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 69 :KGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4747 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1003808824.pdb -s /var/tmp/to_scwrl_1003808824.seq -o /var/tmp/from_scwrl_1003808824.pdb > /var/tmp/scwrl_1003808824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1003808824.pdb Number of alignments=678 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-adpstyle1.a2m # 1moh read from T0287-1moh-t04-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)M191 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1moh 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1moh 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1moh 137 :EIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4752 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_175482052.pdb -s /var/tmp/to_scwrl_175482052.seq -o /var/tmp/from_scwrl_175482052.pdb > /var/tmp/scwrl_175482052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175482052.pdb Number of alignments=679 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-adpstyle5.a2m # 1moh read from T0287-1moh-t04-global-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1moh 102 :SAGQLEAAFKVLS T0287 112 :KF 1moh 115 :GF T0287 142 :IELYGTNL 1moh 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1moh 125 :GAWTAVAGALMG T0287 186 :DLE 1moh 137 :EIE T0287 197 :QNA 1moh 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4760 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_361423480.pdb -s /var/tmp/to_scwrl_361423480.seq -o /var/tmp/from_scwrl_361423480.pdb > /var/tmp/scwrl_361423480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_361423480.pdb Number of alignments=680 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1moh 28 :FFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1moh 138 :I T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 7 number of extra gaps= 0 total=4767 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_621413245.pdb -s /var/tmp/to_scwrl_621413245.seq -o /var/tmp/from_scwrl_621413245.pdb > /var/tmp/scwrl_621413245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_621413245.pdb Number of alignments=681 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 1 :M 1moh 1 :S T0287 3 :NNMRKLFSMI 1moh 8 :SNVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1moh 19 :AAWGTAGPEFFMALFD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1moh 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLL 1moh 121 :GGDEGAWTAVAGALMGEI T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4775 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1548153773.pdb -s /var/tmp/to_scwrl_1548153773.seq -o /var/tmp/from_scwrl_1548153773.pdb > /var/tmp/scwrl_1548153773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1548153773.pdb Number of alignments=682 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-adpstyle1.a2m # 1moh read from T0287-1moh-t04-local-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4777 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_710231707.pdb -s /var/tmp/to_scwrl_710231707.seq -o /var/tmp/from_scwrl_710231707.pdb > /var/tmp/scwrl_710231707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_710231707.pdb Number of alignments=683 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-adpstyle5.a2m # 1moh read from T0287-1moh-t04-local-adpstyle5.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4779 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1451722957.pdb -s /var/tmp/to_scwrl_1451722957.seq -o /var/tmp/from_scwrl_1451722957.pdb > /var/tmp/scwrl_1451722957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451722957.pdb Number of alignments=684 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 6 :RKLFSMIADSKDKKEK 1moh 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=4782 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_639964975.pdb -s /var/tmp/to_scwrl_639964975.seq -o /var/tmp/from_scwrl_639964975.pdb > /var/tmp/scwrl_639964975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_639964975.pdb Number of alignments=685 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSK 1moh 25 :GPEFFMALFDAH T0287 20 :EKLIESLQE 1moh 37 :DDVFAKFSG T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1moh 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4787 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_208933042.pdb -s /var/tmp/to_scwrl_208933042.seq -o /var/tmp/from_scwrl_208933042.pdb > /var/tmp/scwrl_208933042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_208933042.pdb Number of alignments=686 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-adpstyle1.a2m # 1moh read from T0287-1moh-t06-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)M191 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1moh 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1moh 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1moh 137 :EIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4792 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_779842418.pdb -s /var/tmp/to_scwrl_779842418.seq -o /var/tmp/from_scwrl_779842418.pdb > /var/tmp/scwrl_779842418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779842418.pdb Number of alignments=687 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-adpstyle5.a2m # 1moh read from T0287-1moh-t06-global-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1moh 102 :SAGQLEAAFKVLS T0287 112 :KF 1moh 115 :GF T0287 142 :IELYGTNL 1moh 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1moh 125 :GAWTAVAGALMG T0287 186 :DLE 1moh 137 :EIE T0287 197 :QNA 1moh 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4800 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_10671012.pdb -s /var/tmp/to_scwrl_10671012.seq -o /var/tmp/from_scwrl_10671012.pdb > /var/tmp/scwrl_10671012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_10671012.pdb Number of alignments=688 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEK 1moh 28 :FFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1moh 138 :I T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 7 number of extra gaps= 0 total=4807 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1472860316.pdb -s /var/tmp/to_scwrl_1472860316.seq -o /var/tmp/from_scwrl_1472860316.pdb > /var/tmp/scwrl_1472860316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472860316.pdb Number of alignments=689 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 1 :M 1moh 1 :S T0287 3 :NNMRKLFSMI 1moh 8 :SNVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1moh 19 :AAWGTAGPEFFMALFD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1moh 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLL 1moh 121 :GGDEGAWTAVAGALMGEI T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4815 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_284120659.pdb -s /var/tmp/to_scwrl_284120659.seq -o /var/tmp/from_scwrl_284120659.pdb > /var/tmp/scwrl_284120659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_284120659.pdb Number of alignments=690 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-adpstyle1.a2m # 1moh read from T0287-1moh-t06-local-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4817 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1325298306.pdb -s /var/tmp/to_scwrl_1325298306.seq -o /var/tmp/from_scwrl_1325298306.pdb > /var/tmp/scwrl_1325298306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1325298306.pdb Number of alignments=691 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-adpstyle5.a2m # 1moh read from T0287-1moh-t06-local-adpstyle5.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4819 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2056379709.pdb -s /var/tmp/to_scwrl_2056379709.seq -o /var/tmp/from_scwrl_2056379709.pdb > /var/tmp/scwrl_2056379709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2056379709.pdb Number of alignments=692 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 6 :RKLFSMIADSKDKKEK 1moh 26 :PEFFMALFDAHDDVFA T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 46 :LFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=4822 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1974337391.pdb -s /var/tmp/to_scwrl_1974337391.seq -o /var/tmp/from_scwrl_1974337391.pdb > /var/tmp/scwrl_1974337391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974337391.pdb Number of alignments=693 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSK 1moh 25 :GPEFFMALFDAH T0287 20 :EKLIESLQE 1moh 37 :DDVFAKFSG T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1moh 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4827 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_151013389.pdb -s /var/tmp/to_scwrl_151013389.seq -o /var/tmp/from_scwrl_151013389.pdb > /var/tmp/scwrl_151013389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151013389.pdb Number of alignments=694 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-adpstyle1.a2m # 1moh read from T0287-1moh-t2k-global-adpstyle1.a2m # found chain 1moh in template set Warning: unaligning (T0287)M191 because last residue in template chain is (1moh)M142 T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLE 1moh 99 :RGISAGQLEAAFKVLS T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1moh 115 :GFMKSYGGDEGAWTAVAGALMG T0287 186 :DLEKY 1moh 137 :EIEPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4832 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_536523974.pdb -s /var/tmp/to_scwrl_536523974.seq -o /var/tmp/from_scwrl_536523974.pdb > /var/tmp/scwrl_536523974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536523974.pdb Number of alignments=695 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-global-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1moh 32 :LFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGI T0287 80 :GVDKFKKVYRLLE 1moh 102 :SAGQLEAAFKVLS T0287 112 :KF 1moh 115 :GF T0287 142 :IELYGTNL 1moh 117 :MKSYGGDE T0287 173 :QYNDYVRDLLMK 1moh 125 :GAWTAVAGALMG T0287 186 :DLE 1moh 137 :EIE T0287 197 :QNA 1moh 140 :PDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4840 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_243377925.pdb -s /var/tmp/to_scwrl_243377925.seq -o /var/tmp/from_scwrl_243377925.pdb > /var/tmp/scwrl_243377925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_243377925.pdb Number of alignments=696 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 1 :MSNNMRK 1moh 1 :SLEAAQK T0287 8 :LFSMIADSKDKK 1moh 28 :FFMALFDAHDDV T0287 23 :IESL 1moh 40 :FAKF T0287 27 :QENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDY 1moh 51 :AKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANH T0287 77 :KSIGVD 1moh 97 :KARGIS T0287 83 :KFKKVYRLLES 1moh 105 :QLEAAFKVLSG T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 116 :FMKSYGGDEGAWTAVAGALMGE T0287 187 :L 1moh 138 :I T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 9 number of extra gaps= 0 total=4849 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_25006527.pdb -s /var/tmp/to_scwrl_25006527.seq -o /var/tmp/from_scwrl_25006527.pdb > /var/tmp/scwrl_25006527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25006527.pdb Number of alignments=697 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 1 :M 1moh 1 :S T0287 3 :NNMRKLFSMI 1moh 8 :SNVTSSWAKA T0287 13 :ADSKDKKEKLIESLQE 1moh 19 :AAWGTAGPEFFMALFD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 110 :FSKF 1moh 117 :MKSY T0287 165 :YANLKTIEQYNDYVRDLL 1moh 121 :GGDEGAWTAVAGALMGEI T0287 196 :VQNA 1moh 139 :EPDM Number of specific fragments extracted= 8 number of extra gaps= 0 total=4857 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1459923413.pdb -s /var/tmp/to_scwrl_1459923413.seq -o /var/tmp/from_scwrl_1459923413.pdb > /var/tmp/scwrl_1459923413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1459923413.pdb Number of alignments=698 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-adpstyle1.a2m # 1moh read from T0287-1moh-t2k-local-adpstyle1.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYRA 1moh 111 :KVLSGFMKSYGG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4859 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_279795070.pdb -s /var/tmp/to_scwrl_279795070.seq -o /var/tmp/from_scwrl_279795070.pdb > /var/tmp/scwrl_279795070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_279795070.pdb Number of alignments=699 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-local-adpstyle5.a2m # found chain 1moh in template set T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1moh 68 :FKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLE T0287 63 :KVLRNYMKDYR 1moh 111 :KVLSGFMKSYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4861 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1255129562.pdb -s /var/tmp/to_scwrl_1255129562.seq -o /var/tmp/from_scwrl_1255129562.pdb > /var/tmp/scwrl_1255129562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1255129562.pdb Number of alignments=700 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1moh in template set T0287 27 :QENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 51 :AKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLES 1moh 99 :RGISAGQLEAAFKVLSG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4863 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_810268353.pdb -s /var/tmp/to_scwrl_810268353.seq -o /var/tmp/from_scwrl_810268353.pdb > /var/tmp/scwrl_810268353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_810268353.pdb Number of alignments=701 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1moh-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1moh read from T0287-1moh-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1moh in template set T0287 5 :MRKLFSMIADSK 1moh 25 :GPEFFMALFDAH T0287 20 :EKLIESLQE 1moh 37 :DDVFAKFSG T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1moh 53 :GTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKA T0287 77 :KSIGVDKFKKVYRLLESE 1moh 99 :RGISAGQLEAAFKVLSGF T0287 95 :TMELLHAIAE 1moh 123 :DEGAWTAVAG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4868 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1313759285.pdb -s /var/tmp/to_scwrl_1313759285.seq -o /var/tmp/from_scwrl_1313759285.pdb > /var/tmp/scwrl_1313759285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1313759285.pdb Number of alignments=702 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1moh-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1moh-t2k-muscle.a2m.gz # 1moh read from T0287-1moh-t2k-muscle.a2m.gz # found chain 1moh in template set Warning: unaligning (T0287)K194 because last residue in template chain is (1moh)M142 T0287 1 :MSN 1moh 2 :LEA T0287 42 :DQIKTMHDFFKQMHTNKGALD 1moh 5 :AQKSNVTSSWAKASAAWGTAG T0287 63 :KVLRNYMKDYRAVIK 1moh 27 :EFFMALFDAHDDVFA T0287 83 :KFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1moh 42 :KFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSN T0287 121 :FLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMT 1moh 75 :WVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKV T0287 164 :FYANLKTIEQYNDYVRDLLMKF 1moh 113 :LSGFMKSYGGDEGAWTAVAGAL T0287 187 :LEKYMKE 1moh 135 :MGEIEPD Number of specific fragments extracted= 7 number of extra gaps= 0 total=4875 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1017611797.pdb -s /var/tmp/to_scwrl_1017611797.seq -o /var/tmp/from_scwrl_1017611797.pdb > /var/tmp/scwrl_1017611797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017611797.pdb Number of alignments=703 # command:# Prefix for input files set to 1qdbA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-fssp-global-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-fssp-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 16 :KDKKEK 1qdbA 62 :SWKKTK T0287 24 :ESLQENELLN 1qdbA 68 :EYDSFTDMLA T0287 34 :TDEKKKIIDQIKTMHDFF 1qdbA 134 :SPDVPRLIEEDGELEYFT T0287 52 :KQMHTNKGALDKV 1qdbA 168 :ANCHDDKTAELKV T0287 66 :RNYM 1qdbA 182 :VPHL T0287 70 :KDYRAVIKSIGVDKFKKVYRL 1qdbA 219 :FKKTEWKDAKGADKTAMVVTL T0287 91 :LESETMELLHAIAENPNFLFS 1qdbA 309 :QEGSVKYSDHQVKENPLDSMD T0287 112 :KFDRSILGIFLPFFSKPIMFKMSIREM 1qdbA 350 :KYERKEFLNKVAFDNIGKAHLETGKAI T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKT 1qdbA 380 :ASDEELKEVRKLIRHGQFKADMAIAAHGNYFH T0287 171 :IEQYN 1qdbA 438 :LAKHG T0287 176 :DYVR 1qdbA 445 :DYIA T0287 180 :DLLMKFDLEKYMKEK 1qdbA 458 :QKLAKVDIAALAAEK T0287 195 :GVQN 1qdbA 510 :SWNK Number of specific fragments extracted= 13 number of extra gaps= 0 total=4888 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_190498783.pdb -s /var/tmp/to_scwrl_190498783.seq -o /var/tmp/from_scwrl_190498783.pdb > /var/tmp/scwrl_190498783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190498783.pdb Number of alignments=704 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-fssp-local-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-fssp-local-adpstyle5.a2m # found chain 1qdbA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4888 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-global-adpstyle1.a2m # 1qdbA read from 1qdbA-T0287-t2k-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKD 1qdbA 52 :WAKYYPRQFDSWKKTKE T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qdbA 69 :YDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHY T0287 62 :DKVLRNYMKDYRAVI 1qdbA 147 :LEYFTGKWAKYGSQI T0287 77 :KS 1qdbA 243 :NG T0287 79 :IGVDKFKKVYR 1qdbA 251 :AGVEGMIKYYD T0287 92 :ESETMELLHAIAENPNFL 1qdbA 262 :EINFSDWTHNISKTPMLK T0287 110 :FSKFDRSILGIF 1qdbA 285 :FEFWKSGIHGQK T0287 122 :LPFFS 1qdbA 323 :NPLDS T0287 127 :KPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1qdbA 344 :RGIVHQKYERKEFLNKVAFDNIGKAHLETGKAIE T0287 164 :FYANLKTIEQYNDYVRDLLMKFD 1qdbA 378 :AGASDEELKEVRKLIRHGQFKAD T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 11 number of extra gaps= 0 total=4899 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1200574791.pdb -s /var/tmp/to_scwrl_1200574791.seq -o /var/tmp/from_scwrl_1200574791.pdb > /var/tmp/scwrl_1200574791.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200574791.pdb Number of alignments=705 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-global-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-t2k-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKD 1qdbA 52 :WAKYYPRQFDSWKKTKE T0287 28 :ENELLNTDEKKKIID 1qdbA 69 :YDSFTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYM 1qdbA 101 :HYYALQDNVNSLRTGAPVDAKTGPLPT T0287 70 :KDYRAVIKSIGVDKF 1qdbA 135 :PDVPRLIEEDGELEY T0287 85 :KKVYR 1qdbA 257 :IKYYD T0287 92 :ESETMELLHAIAENPNFLFS 1qdbA 262 :EINFSDWTHNISKTPMLKAQ T0287 112 :KFDRSILGIF 1qdbA 284 :GFEFWKSGIH T0287 122 :LPFFS 1qdbA 323 :NPLDS T0287 127 :KPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 1qdbA 344 :RGIVHQKYERKEFLNKVAFDNIGKAHLETGKAIE T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 378 :AGASDEELKEVRKLIRHGQFK T0287 185 :FDLEKYMKEK 1qdbA 463 :VDIAALAAEK T0287 195 :GVQ 1qdbA 491 :GRA T0287 198 :NA 1qdbA 513 :KK Number of specific fragments extracted= 13 number of extra gaps= 0 total=4912 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1908417540.pdb -s /var/tmp/to_scwrl_1908417540.seq -o /var/tmp/from_scwrl_1908417540.pdb > /var/tmp/scwrl_1908417540.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908417540.pdb Number of alignments=706 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-local-adpstyle1.a2m # 1qdbA read from 1qdbA-T0287-t2k-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 182 :LMKFDLEKYMKEK 1qdbA 460 :LAKVDIAALAAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4913 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdbA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qdbA-T0287-t2k-local-adpstyle5.a2m # 1qdbA read from 1qdbA-T0287-t2k-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 83 :KFKKVYRLL 1qdbA 412 :APEETLRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4914 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-simplesw-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-simplesw-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4915 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_230223578.pdb -s /var/tmp/to_scwrl_230223578.seq -o /var/tmp/from_scwrl_230223578.pdb > /var/tmp/scwrl_230223578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_230223578.pdb Number of alignments=707 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-simplesw-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-simplesw-adpstyle5.a2m # found chain 1qdbA in template set T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1qdbA 353 :RKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=4916 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_422876329.pdb -s /var/tmp/to_scwrl_422876329.seq -o /var/tmp/from_scwrl_422876329.pdb > /var/tmp/scwrl_422876329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422876329.pdb Number of alignments=708 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t04-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1qdbA 42 :GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAK T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1qdbA 157 :YGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEE T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 202 :HQDKRTLVCAQCHVEYYFKKTEWKDA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4919 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_764742717.pdb -s /var/tmp/to_scwrl_764742717.seq -o /var/tmp/from_scwrl_764742717.pdb > /var/tmp/scwrl_764742717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764742717.pdb Number of alignments=709 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 2 :SNNMRKLFSMIADSKDKKE 1qdbA 49 :SEEWAKYYPRQFDSWKKTK T0287 22 :LIES 1qdbA 68 :EYDS T0287 28 :ENELLNTDEKKK 1qdbA 72 :FTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1qdbA 84 :IAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTG T0287 83 :KFKKVYRLLESET 1qdbA 133 :KSPDVPRLIEEDG T0287 97 :EL 1qdbA 146 :EL T0287 104 :ENPNFLFSKFDRSILGI 1qdbA 148 :EYFTGKWAKYGSQIVNV T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 165 :IGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTL T0287 183 :MKFDLEKYMKEKGVQNA 1qdbA 211 :AQCHVEYYFKKTEWKDA Number of specific fragments extracted= 9 number of extra gaps= 0 total=4928 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_405705630.pdb -s /var/tmp/to_scwrl_405705630.seq -o /var/tmp/from_scwrl_405705630.pdb > /var/tmp/scwrl_405705630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_405705630.pdb Number of alignments=710 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFS 1qdbA 42 :GIAGKEKSEE T0287 15 :SKDKKEKLIESLQENELLNT 1qdbA 52 :WAKYYPRQFDSWKKTKEYDS T0287 35 :DEKK 1qdbA 119 :DAKT T0287 39 :KIIDQIKTMHDF 1qdbA 139 :RLIEEDGELEYF T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFKKVY 1qdbA 181 :RVPHLNRGLQAAGLKTFEEST T0287 93 :SETMELLHAIAENPNFLFSK 1qdbA 202 :HQDKRTLVCAQCHVEYYFKK T0287 113 :FDRSILGIFLPF 1qdbA 230 :ADKTAMVVTLPW T0287 125 :FSKPIMFK 1qdbA 272 :ISKTPMLK T0287 133 :MSIREMDSQIELYGT 1qdbA 305 :MPYTQEGSVKYSDHQ T0287 148 :NLP 1qdbA 322 :ENP T0287 168 :LKTIEQY 1qdbA 325 :LDSMDQS T0287 175 :NDYVRDLL 1qdbA 340 :ESKLRGIV T0287 183 :MKFDLEKYMK 1qdbA 349 :QKYERKEFLN Number of specific fragments extracted= 14 number of extra gaps= 0 total=4942 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_784299810.pdb -s /var/tmp/to_scwrl_784299810.seq -o /var/tmp/from_scwrl_784299810.pdb > /var/tmp/scwrl_784299810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784299810.pdb Number of alignments=711 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :M 1qdbA 42 :G T0287 2 :SNNMRKLFSMIADSKD 1qdbA 53 :AKYYPRQFDSWKKTKE T0287 42 :DQIKTMHDF 1qdbA 139 :RLIEEDGEL T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFK 1qdbA 181 :RVPHLNRGLQAAGLKTFE T0287 86 :KVYRLL 1qdbA 203 :QDKRTL T0287 96 :MELLHAIAENPNFLFSKFD 1qdbA 253 :VEGMIKYYDEINFSDWTHN T0287 115 :RSILGIFLPFFSK 1qdbA 298 :VSCADCHMPYTQE T0287 128 :PIMFK 1qdbA 312 :SVKYS T0287 134 :SIREMDSQIEL 1qdbA 317 :DHQVKENPLDS T0287 146 :GT 1qdbA 336 :HR T0287 157 :MTDEEVN 1qdbA 380 :ASDEELK T0287 168 :LKTIEQYNDYVRDLLMK 1qdbA 417 :LRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 14 number of extra gaps= 0 total=4956 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1386155962.pdb -s /var/tmp/to_scwrl_1386155962.seq -o /var/tmp/from_scwrl_1386155962.pdb > /var/tmp/scwrl_1386155962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1386155962.pdb Number of alignments=712 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t04-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4957 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1953859403.pdb -s /var/tmp/to_scwrl_1953859403.seq -o /var/tmp/from_scwrl_1953859403.pdb > /var/tmp/scwrl_1953859403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1953859403.pdb Number of alignments=713 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 351 :YERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4958 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1494531516.pdb -s /var/tmp/to_scwrl_1494531516.seq -o /var/tmp/from_scwrl_1494531516.pdb > /var/tmp/scwrl_1494531516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494531516.pdb Number of alignments=714 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHDFF 1qdbA 336 :HRESESKLRGIVHQKYERKEFL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=4960 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_690395273.pdb -s /var/tmp/to_scwrl_690395273.seq -o /var/tmp/from_scwrl_690395273.pdb > /var/tmp/scwrl_690395273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690395273.pdb Number of alignments=715 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMH 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFLN T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 359 :KVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 413 :PEETLRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4964 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_446340731.pdb -s /var/tmp/to_scwrl_446340731.seq -o /var/tmp/from_scwrl_446340731.pdb > /var/tmp/scwrl_446340731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_446340731.pdb Number of alignments=716 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t06-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1qdbA 42 :GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAK T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1qdbA 157 :YGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEE T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 202 :HQDKRTLVCAQCHVEYYFKKTEWKDA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4967 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1703464559.pdb -s /var/tmp/to_scwrl_1703464559.seq -o /var/tmp/from_scwrl_1703464559.pdb > /var/tmp/scwrl_1703464559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703464559.pdb Number of alignments=717 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 2 :SNNMRKLFSMIADSKDKKE 1qdbA 49 :SEEWAKYYPRQFDSWKKTK T0287 22 :LIES 1qdbA 68 :EYDS T0287 28 :ENELLNTDEKKK 1qdbA 72 :FTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1qdbA 84 :IAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTG T0287 83 :KFKKVYRLLESET 1qdbA 133 :KSPDVPRLIEEDG T0287 97 :EL 1qdbA 146 :EL T0287 104 :ENPNFLFSKFDRSILGI 1qdbA 148 :EYFTGKWAKYGSQIVNV T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 165 :IGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTL T0287 183 :MKFDLEKYMKEKGVQNA 1qdbA 211 :AQCHVEYYFKKTEWKDA Number of specific fragments extracted= 9 number of extra gaps= 0 total=4976 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1470237691.pdb -s /var/tmp/to_scwrl_1470237691.seq -o /var/tmp/from_scwrl_1470237691.pdb > /var/tmp/scwrl_1470237691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1470237691.pdb Number of alignments=718 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFS 1qdbA 42 :GIAGKEKSEE T0287 15 :SKDKKEKLIESLQENELLNT 1qdbA 52 :WAKYYPRQFDSWKKTKEYDS T0287 35 :DEKK 1qdbA 119 :DAKT T0287 39 :KIIDQIKTMHDF 1qdbA 139 :RLIEEDGELEYF T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFKKVY 1qdbA 181 :RVPHLNRGLQAAGLKTFEEST T0287 93 :SETMELLHAIAENPNFLFSK 1qdbA 202 :HQDKRTLVCAQCHVEYYFKK T0287 113 :FDRSILGIFLPF 1qdbA 230 :ADKTAMVVTLPW T0287 125 :FSKPIMFK 1qdbA 272 :ISKTPMLK T0287 133 :MSIREMDSQIELYGT 1qdbA 305 :MPYTQEGSVKYSDHQ T0287 148 :NLP 1qdbA 322 :ENP T0287 168 :LKTIEQY 1qdbA 325 :LDSMDQS T0287 175 :NDYVRDLL 1qdbA 340 :ESKLRGIV T0287 183 :MKFDLEKYMK 1qdbA 349 :QKYERKEFLN Number of specific fragments extracted= 14 number of extra gaps= 0 total=4990 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_457011743.pdb -s /var/tmp/to_scwrl_457011743.seq -o /var/tmp/from_scwrl_457011743.pdb > /var/tmp/scwrl_457011743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457011743.pdb Number of alignments=719 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :M 1qdbA 42 :G T0287 2 :SNNMRKLFSMIADSKD 1qdbA 53 :AKYYPRQFDSWKKTKE T0287 42 :DQIKTMHDF 1qdbA 139 :RLIEEDGEL T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFK 1qdbA 181 :RVPHLNRGLQAAGLKTFE T0287 86 :KVYRLL 1qdbA 203 :QDKRTL T0287 96 :MELLHAIAENPNFLFSKFD 1qdbA 253 :VEGMIKYYDEINFSDWTHN T0287 115 :RSILGIFLPFFSK 1qdbA 298 :VSCADCHMPYTQE T0287 128 :PIMFK 1qdbA 312 :SVKYS T0287 134 :SIREMDSQIEL 1qdbA 317 :DHQVKENPLDS T0287 146 :GT 1qdbA 336 :HR T0287 157 :MTDEEVN 1qdbA 380 :ASDEELK T0287 168 :LKTIEQYNDYVRDLLMK 1qdbA 417 :LRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 14 number of extra gaps= 0 total=5004 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1028841229.pdb -s /var/tmp/to_scwrl_1028841229.seq -o /var/tmp/from_scwrl_1028841229.pdb > /var/tmp/scwrl_1028841229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1028841229.pdb Number of alignments=720 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t06-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5005 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1754358350.pdb -s /var/tmp/to_scwrl_1754358350.seq -o /var/tmp/from_scwrl_1754358350.pdb > /var/tmp/scwrl_1754358350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754358350.pdb Number of alignments=721 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 351 :YERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5006 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1782310050.pdb -s /var/tmp/to_scwrl_1782310050.seq -o /var/tmp/from_scwrl_1782310050.pdb > /var/tmp/scwrl_1782310050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782310050.pdb Number of alignments=722 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHDFF 1qdbA 336 :HRESESKLRGIVHQKYERKEFL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=5008 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_937737291.pdb -s /var/tmp/to_scwrl_937737291.seq -o /var/tmp/from_scwrl_937737291.pdb > /var/tmp/scwrl_937737291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_937737291.pdb Number of alignments=723 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMH 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFLN T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 359 :KVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 413 :PEETLRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=5012 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1581212094.pdb -s /var/tmp/to_scwrl_1581212094.seq -o /var/tmp/from_scwrl_1581212094.pdb > /var/tmp/scwrl_1581212094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581212094.pdb Number of alignments=724 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t2k-global-adpstyle1.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDR 1qdbA 42 :GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAK T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQ 1qdbA 157 :YGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEE T0287 174 :YNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 202 :HQDKRTLVCAQCHVEYYFKKTEWKDA Number of specific fragments extracted= 3 number of extra gaps= 0 total=5015 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1933323439.pdb -s /var/tmp/to_scwrl_1933323439.seq -o /var/tmp/from_scwrl_1933323439.pdb > /var/tmp/scwrl_1933323439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1933323439.pdb Number of alignments=725 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-global-adpstyle5.a2m # found chain 1qdbA in template set T0287 2 :SNNMRKLFSMIADSKDKKE 1qdbA 49 :SEEWAKYYPRQFDSWKKTK T0287 22 :LIES 1qdbA 68 :EYDS T0287 28 :ENELLNTDEKKK 1qdbA 72 :FTDMLAKDPALV T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 1qdbA 84 :IAWSGYAFSKDYNSPRGHYYALQDNVNSLRTGAPVDAKTG T0287 83 :KFKKVYRLLESET 1qdbA 133 :KSPDVPRLIEEDG T0287 97 :EL 1qdbA 146 :EL T0287 104 :ENPNFLFSKFDRSILGI 1qdbA 148 :EYFTGKWAKYGSQIVNV T0287 139 :DSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 165 :IGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTL T0287 183 :MKFDLEKYMKEKGVQNA 1qdbA 211 :AQCHVEYYFKKTEWKDA Number of specific fragments extracted= 9 number of extra gaps= 0 total=5024 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1474261265.pdb -s /var/tmp/to_scwrl_1474261265.seq -o /var/tmp/from_scwrl_1474261265.pdb > /var/tmp/scwrl_1474261265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474261265.pdb Number of alignments=726 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :MSNNMRKL 1qdbA 42 :GIAGKEKS T0287 13 :ADSKDKKEKLIESLQENELLNT 1qdbA 50 :EEWAKYYPRQFDSWKKTKEYDS T0287 35 :DEKK 1qdbA 119 :DAKT T0287 39 :KIIDQIKTMHDF 1qdbA 139 :RLIEEDGELEYF T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFKKV 1qdbA 181 :RVPHLNRGLQAAGLKTFEES T0287 92 :ESETMELLHAIAENPNFLFSK 1qdbA 201 :THQDKRTLVCAQCHVEYYFKK T0287 113 :FDRSILGIFLPF 1qdbA 230 :ADKTAMVVTLPW T0287 125 :FSKPIMFK 1qdbA 272 :ISKTPMLK T0287 133 :MSIREMDSQIELYGT 1qdbA 305 :MPYTQEGSVKYSDHQ T0287 148 :NLPL 1qdbA 322 :ENPL T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLL 1qdbA 336 :HRESESKLRGIVHQKYERKEFLNKVA Number of specific fragments extracted= 12 number of extra gaps= 0 total=5036 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1824590020.pdb -s /var/tmp/to_scwrl_1824590020.seq -o /var/tmp/from_scwrl_1824590020.pdb > /var/tmp/scwrl_1824590020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1824590020.pdb Number of alignments=727 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 1 :M 1qdbA 42 :G T0287 2 :SNNMRKLFSMIADSKD 1qdbA 53 :AKYYPRQFDSWKKTKE T0287 42 :DQIKTMHDF 1qdbA 139 :RLIEEDGEL T0287 51 :FKQMHTNKGA 1qdbA 167 :CANCHDDKTA T0287 68 :YMKDYRAVIKSIGVDKFK 1qdbA 181 :RVPHLNRGLQAAGLKTFE T0287 86 :KVYRLL 1qdbA 203 :QDKRTL T0287 96 :MELLHAIAENPNFLFSKFD 1qdbA 253 :VEGMIKYYDEINFSDWTHN T0287 115 :RSILGIFLPFFSK 1qdbA 298 :VSCADCHMPYTQE T0287 128 :PIMFK 1qdbA 312 :SVKYS T0287 134 :SIREMDSQIEL 1qdbA 317 :DHQVKENPLDS T0287 146 :GT 1qdbA 336 :HR T0287 157 :MTDEEVN 1qdbA 380 :ASDEELK T0287 168 :LKTIEQYNDYVRDLLMK 1qdbA 417 :LRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 14 number of extra gaps= 0 total=5050 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1958329966.pdb -s /var/tmp/to_scwrl_1958329966.seq -o /var/tmp/from_scwrl_1958329966.pdb > /var/tmp/scwrl_1958329966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1958329966.pdb Number of alignments=728 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-adpstyle1.a2m # 1qdbA read from T0287-1qdbA-t2k-local-adpstyle1.a2m # found chain 1qdbA in template set T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFL 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5051 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_786701032.pdb -s /var/tmp/to_scwrl_786701032.seq -o /var/tmp/from_scwrl_786701032.pdb > /var/tmp/scwrl_786701032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786701032.pdb Number of alignments=729 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-local-adpstyle5.a2m # found chain 1qdbA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 351 :YERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5052 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2104385090.pdb -s /var/tmp/to_scwrl_2104385090.seq -o /var/tmp/from_scwrl_2104385090.pdb > /var/tmp/scwrl_2104385090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2104385090.pdb Number of alignments=730 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qdbA in template set T0287 28 :ENELLNTDEKKKIIDQIKTMHDFF 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFL T0287 57 :NKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETME 1qdbA 358 :NKVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5054 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1065975883.pdb -s /var/tmp/to_scwrl_1065975883.seq -o /var/tmp/from_scwrl_1065975883.pdb > /var/tmp/scwrl_1065975883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1065975883.pdb Number of alignments=731 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qdbA read from T0287-1qdbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qdbA in template set T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMH 1qdbA 334 :NCHRESESKLRGIVHQKYERKEFLN T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFS 1qdbA 359 :KVAFDNIGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHA T0287 164 :FYANLKTIEQYNDYVRDLLMK 1qdbA 413 :PEETLRLLAAGSDDAQKARLL T0287 187 :LEKYMKEKGVQNA 1qdbA 434 :LVKILAKHGVMDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=5058 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1596969384.pdb -s /var/tmp/to_scwrl_1596969384.seq -o /var/tmp/from_scwrl_1596969384.pdb > /var/tmp/scwrl_1596969384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1596969384.pdb Number of alignments=732 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qdbA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1qdbA-t2k-muscle.a2m.gz # 1qdbA read from T0287-1qdbA-t2k-muscle.a2m.gz # found chain 1qdbA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 1qdbA 52 :WAKYYPRQFDSWKKTKEYD T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1qdbA 106 :QDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWAKYGSQIVNVIGCANCHDDKTA T0287 91 :LESETMELLHAIAENPNFLFSKFDRS 1qdbA 178 :LKVRVPHLNRGLQAAGLKTFEESTHQ T0287 117 :ILGIFLPF 1qdbA 234 :AMVVTLPW T0287 125 :FSKPIMFKMSIREMDSQI 1qdbA 288 :WKSGIHGQKGVSCADCHM T0287 143 :ELYGTNLP 1qdbA 314 :KYSDHQVK T0287 151 :LLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1qdbA 365 :IGKAHLETGKAIEAGASDEELKEVRKLIRHGQFKADMAIAAHGNYFHAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=5065 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1270660729.pdb -s /var/tmp/to_scwrl_1270660729.seq -o /var/tmp/from_scwrl_1270660729.pdb > /var/tmp/scwrl_1270660729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1270660729.pdb Number of alignments=733 # command:# Prefix for input files set to 1qspA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-global-adpstyle5.a2m # 1qspA read from 1qspA-T0287-fssp-global-adpstyle5.a2m # found chain 1qspA in template set T0287 19 :KEKLIESLQENELLNTDEKKK 1qspA 5 :PSEIINWTILNEIISMDDDDS T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1qspA 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPF 1qspA 65 :FLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINID T0287 125 :FS 1qspA 120 :DD T0287 127 :KPIMFKMSIREMDSQIELYGTNLP 1qspA 137 :YLILIAKALNQSRLEFKLARIELS Number of specific fragments extracted= 5 number of extra gaps= 0 total=5070 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2083587679.pdb -s /var/tmp/to_scwrl_2083587679.seq -o /var/tmp/from_scwrl_2083587679.pdb > /var/tmp/scwrl_2083587679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083587679.pdb Number of alignments=734 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-fssp-local-adpstyle5.a2m # 1qspA read from 1qspA-T0287-fssp-local-adpstyle5.a2m # found chain 1qspA in template set T0287 26 :LQENELLNTDEKKK 1qspA 12 :TILNEIISMDDDDS T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1qspA 26 :DFSKGLIIQFIDQAQTTFAQMQRQLDGEKN T0287 71 :DYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1qspA 65 :FLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDE T0287 126 :SKPIMFKMSIREMDSQIELY 1qspA 136 :IYLILIAKALNQSRLEFKLA Number of specific fragments extracted= 4 number of extra gaps= 0 total=5074 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1787468168.pdb -s /var/tmp/to_scwrl_1787468168.seq -o /var/tmp/from_scwrl_1787468168.pdb > /var/tmp/scwrl_1787468168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787468168.pdb Number of alignments=735 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-global-adpstyle1.a2m # 1qspA read from 1qspA-T0287-t2k-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 8 :LFSMIAD 1qspA 4 :IPSEIIN T0287 20 :EKLIESLQENELLNTDEKKKIIDQ 1qspA 11 :WTILNEIISMDDDDSDFSKGLIIQ T0287 50 :FFKQMHTNKGALDKVLR 1qspA 35 :FIDQAQTTFAQMQRQLD T0287 68 :YMKDYRAVIK 1qspA 52 :GEKNLTELDN T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1qspA 72 :ALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSI T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 1qspA 112 :INGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKY Number of specific fragments extracted= 7 number of extra gaps= 0 total=5081 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_323751874.pdb -s /var/tmp/to_scwrl_323751874.seq -o /var/tmp/from_scwrl_323751874.pdb > /var/tmp/scwrl_323751874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323751874.pdb Number of alignments=736 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-global-adpstyle5.a2m # 1qspA read from 1qspA-T0287-t2k-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MS 1qspA 3 :TI T0287 9 :FSMIAD 1qspA 5 :PSEIIN T0287 20 :EKLIESLQENELLNTDEKKKIIDQ 1qspA 11 :WTILNEIISMDDDDSDFSKGLIIQ T0287 50 :FFKQMHTNKGALDKVLR 1qspA 35 :FIDQAQTTFAQMQRQLD T0287 68 :YMKDYRAVI 1qspA 52 :GEKNLTELD T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSI 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSI T0287 146 :GTN 1qspA 114 :GIN T0287 149 :LPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDL 1qspA 123 :EIKIQVDDKDENSIYLILIAKALNQSRLEFKLA T0287 184 :KFDLEKYMKE 1qspA 156 :RIELSKYYNT T0287 198 :NA 1qspA 166 :NL Number of specific fragments extracted= 10 number of extra gaps= 0 total=5091 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1844521572.pdb -s /var/tmp/to_scwrl_1844521572.seq -o /var/tmp/from_scwrl_1844521572.pdb > /var/tmp/scwrl_1844521572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844521572.pdb Number of alignments=737 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-local-adpstyle1.a2m # 1qspA read from 1qspA-T0287-t2k-local-adpstyle1.a2m # found chain 1qspA in template set T0287 47 :MHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQ T0287 81 :VDKFKKVYRLL 1qspA 53 :EKNLTELDNLG Number of specific fragments extracted= 2 number of extra gaps= 0 total=5093 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2017691746.pdb -s /var/tmp/to_scwrl_2017691746.seq -o /var/tmp/from_scwrl_2017691746.pdb > /var/tmp/scwrl_2017691746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2017691746.pdb Number of alignments=738 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qspA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1qspA-T0287-t2k-local-adpstyle5.a2m # 1qspA read from 1qspA-T0287-t2k-local-adpstyle5.a2m # found chain 1qspA in template set T0287 50 :FFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1qspA 17 :IISMDDDDSDFSKGLIIQFIDQAQTTFAQMQ T0287 81 :VDKFKKV 1qspA 53 :EKNLTEL Number of specific fragments extracted= 2 number of extra gaps= 0 total=5095 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_746628203.pdb -s /var/tmp/to_scwrl_746628203.seq -o /var/tmp/from_scwrl_746628203.pdb > /var/tmp/scwrl_746628203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_746628203.pdb Number of alignments=739 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-simplesw-adpstyle1.a2m # 1qspA read from T0287-1qspA-simplesw-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=5096 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_461780642.pdb -s /var/tmp/to_scwrl_461780642.seq -o /var/tmp/from_scwrl_461780642.pdb > /var/tmp/scwrl_461780642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_461780642.pdb Number of alignments=740 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-simplesw-adpstyle5.a2m # 1qspA read from T0287-1qspA-simplesw-adpstyle5.a2m # found chain 1qspA in template set T0287 28 :ENELLNTDEKKKIIDQI 1qspA 99 :KTELVNTLSDKSIINGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5097 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-adpstyle1.a2m # 1qspA read from T0287-1qspA-t04-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREMDSQI 1qspA 114 :GINIDEDDEEI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5103 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_275913730.pdb -s /var/tmp/to_scwrl_275913730.seq -o /var/tmp/from_scwrl_275913730.pdb > /var/tmp/scwrl_275913730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_275913730.pdb Number of alignments=741 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREMDSQIEL 1qspA 113 :NGINIDEDDEEIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5109 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1530928012.pdb -s /var/tmp/to_scwrl_1530928012.seq -o /var/tmp/from_scwrl_1530928012.pdb > /var/tmp/scwrl_1530928012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1530928012.pdb Number of alignments=742 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 0 total=5117 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1847936604.pdb -s /var/tmp/to_scwrl_1847936604.seq -o /var/tmp/from_scwrl_1847936604.pdb > /var/tmp/scwrl_1847936604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1847936604.pdb Number of alignments=743 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 2 :SNNMRKLFSMIADSKDKKEKLIE 1qspA 11 :WTILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYMK 1qspA 154 :LARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 0 total=5127 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_82289486.pdb -s /var/tmp/to_scwrl_82289486.seq -o /var/tmp/from_scwrl_82289486.pdb > /var/tmp/scwrl_82289486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_82289486.pdb Number of alignments=744 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-adpstyle1.a2m # 1qspA read from T0287-1qspA-t04-local-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=5128 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_877975883.pdb -s /var/tmp/to_scwrl_877975883.seq -o /var/tmp/from_scwrl_877975883.pdb > /var/tmp/scwrl_877975883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877975883.pdb Number of alignments=745 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-local-adpstyle5.a2m # found chain 1qspA in template set T0287 93 :SETMELLHAIAENPNFLFSKFDRSIL 1qspA 87 :NLGRKMEHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=5129 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_390848231.pdb -s /var/tmp/to_scwrl_390848231.seq -o /var/tmp/from_scwrl_390848231.pdb > /var/tmp/scwrl_390848231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390848231.pdb Number of alignments=746 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFY 1qspA 131 :KDENSIY Number of specific fragments extracted= 6 number of extra gaps= 0 total=5135 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_528630218.pdb -s /var/tmp/to_scwrl_528630218.seq -o /var/tmp/from_scwrl_528630218.pdb > /var/tmp/scwrl_528630218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_528630218.pdb Number of alignments=747 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 3 :NNMRKLFSMIADSKDKKEKLIE 1qspA 12 :TILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYM 1qspA 154 :LARIELSKYY Number of specific fragments extracted= 8 number of extra gaps= 0 total=5143 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_433956795.pdb -s /var/tmp/to_scwrl_433956795.seq -o /var/tmp/from_scwrl_433956795.pdb > /var/tmp/scwrl_433956795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_433956795.pdb Number of alignments=748 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-adpstyle1.a2m # 1qspA read from T0287-1qspA-t06-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREMDSQI 1qspA 114 :GINIDEDDEEI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5149 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1861085922.pdb -s /var/tmp/to_scwrl_1861085922.seq -o /var/tmp/from_scwrl_1861085922.pdb > /var/tmp/scwrl_1861085922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861085922.pdb Number of alignments=749 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREMDSQIEL 1qspA 113 :NGINIDEDDEEIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5155 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_985641961.pdb -s /var/tmp/to_scwrl_985641961.seq -o /var/tmp/from_scwrl_985641961.pdb > /var/tmp/scwrl_985641961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_985641961.pdb Number of alignments=750 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 0 total=5163 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1462798023.pdb -s /var/tmp/to_scwrl_1462798023.seq -o /var/tmp/from_scwrl_1462798023.pdb > /var/tmp/scwrl_1462798023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1462798023.pdb Number of alignments=751 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 2 :SNNMRKLFSMIADSKDKKEKLIE 1qspA 11 :WTILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYMK 1qspA 154 :LARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 0 total=5173 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1467960625.pdb -s /var/tmp/to_scwrl_1467960625.seq -o /var/tmp/from_scwrl_1467960625.pdb > /var/tmp/scwrl_1467960625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1467960625.pdb Number of alignments=752 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-adpstyle1.a2m # 1qspA read from T0287-1qspA-t06-local-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=5174 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_620468364.pdb -s /var/tmp/to_scwrl_620468364.seq -o /var/tmp/from_scwrl_620468364.pdb > /var/tmp/scwrl_620468364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620468364.pdb Number of alignments=753 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-local-adpstyle5.a2m # found chain 1qspA in template set T0287 93 :SETMELLHAIAENPNFLFSKFDRSIL 1qspA 87 :NLGRKMEHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=5175 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_253051667.pdb -s /var/tmp/to_scwrl_253051667.seq -o /var/tmp/from_scwrl_253051667.pdb > /var/tmp/scwrl_253051667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_253051667.pdb Number of alignments=754 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALD 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLT T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVY 1qspA 58 :ELDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFY 1qspA 131 :KDENSIY Number of specific fragments extracted= 6 number of extra gaps= 0 total=5181 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_901689073.pdb -s /var/tmp/to_scwrl_901689073.seq -o /var/tmp/from_scwrl_901689073.pdb > /var/tmp/scwrl_901689073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901689073.pdb Number of alignments=755 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 3 :NNMRKLFSMIADSKDKKEKLIE 1qspA 12 :TILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYM 1qspA 154 :LARIELSKYY Number of specific fragments extracted= 8 number of extra gaps= 0 total=5189 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_406308157.pdb -s /var/tmp/to_scwrl_406308157.seq -o /var/tmp/from_scwrl_406308157.pdb > /var/tmp/scwrl_406308157.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_406308157.pdb Number of alignments=756 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-adpstyle1.a2m # 1qspA read from T0287-1qspA-t2k-global-adpstyle1.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSS T0287 77 :KSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 1qspA 71 :AALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIIN T0287 132 :KMSIREMDSQI 1qspA 114 :GINIDEDDEEI T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 125 :KIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5195 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1727312932.pdb -s /var/tmp/to_scwrl_1727312932.seq -o /var/tmp/from_scwrl_1727312932.pdb > /var/tmp/scwrl_1727312932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1727312932.pdb Number of alignments=757 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-global-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1qspA 14 :LNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSIL 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSII T0287 131 :FKMSIREMDSQIEL 1qspA 113 :NGINIDEDDEEIKI T0287 155 :FVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 127 :QVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5201 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_578795446.pdb -s /var/tmp/to_scwrl_578795446.seq -o /var/tmp/from_scwrl_578795446.pdb > /var/tmp/scwrl_578795446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578795446.pdb Number of alignments=758 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :MSNN 1qspA 3 :TIPS T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVY 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 8 number of extra gaps= 0 total=5209 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_217154476.pdb -s /var/tmp/to_scwrl_217154476.seq -o /var/tmp/from_scwrl_217154476.pdb > /var/tmp/scwrl_217154476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_217154476.pdb Number of alignments=759 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 1 :M 1qspA 3 :T T0287 2 :SNNMRKLFSMIADSKDKKEKLIE 1qspA 11 :WTILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYMK 1qspA 154 :LARIELSKYYN T0287 197 :QNA 1qspA 165 :TNL Number of specific fragments extracted= 10 number of extra gaps= 0 total=5219 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_366530318.pdb -s /var/tmp/to_scwrl_366530318.seq -o /var/tmp/from_scwrl_366530318.pdb > /var/tmp/scwrl_366530318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_366530318.pdb Number of alignments=760 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-adpstyle1.a2m # 1qspA read from T0287-1qspA-t2k-local-adpstyle1.a2m # found chain 1qspA in template set T0287 30 :ELLNTDEKKKIIDQIKTMHD 1qspA 101 :ELVNTLSDKSIINGINIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=5220 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_535696890.pdb -s /var/tmp/to_scwrl_535696890.seq -o /var/tmp/from_scwrl_535696890.pdb > /var/tmp/scwrl_535696890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535696890.pdb Number of alignments=761 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-local-adpstyle5.a2m # found chain 1qspA in template set T0287 93 :SETMELLHAIAENPNFLFSKFDRSIL 1qspA 87 :NLGRKMEHFFPNKTELVNTLSDKSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=5221 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1283130358.pdb -s /var/tmp/to_scwrl_1283130358.seq -o /var/tmp/from_scwrl_1283130358.pdb > /var/tmp/scwrl_1283130358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1283130358.pdb Number of alignments=762 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1qspA in template set T0287 5 :MRKLFSMIADSKDKKEKLIE 1qspA 14 :LNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVY 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVC T0287 97 :ELLHAIAENPNFLFSKFDRSIL 1qspA 83 :ERIQNLGRKMEHFFPNKTELVN T0287 123 :PFFSKPIMFKMSIREMDSQIELYGTN 1qspA 105 :TLSDKSIINGINIDEDDEEIKIQVDD T0287 159 :DEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMK 1qspA 131 :KDENSIYLILIAKALNQSRLEFKLARIELSKYYN Number of specific fragments extracted= 6 number of extra gaps= 0 total=5227 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1963499702.pdb -s /var/tmp/to_scwrl_1963499702.seq -o /var/tmp/from_scwrl_1963499702.pdb > /var/tmp/scwrl_1963499702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1963499702.pdb Number of alignments=763 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qspA read from T0287-1qspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qspA in template set T0287 3 :NNMRKLFSMIADSKDKKEKLIE 1qspA 12 :TILNEIISMDDDDSDFSKGLII T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDK 1qspA 34 :QFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQ T0287 101 :AIAENPNFLFSK 1qspA 87 :NLGRKMEHFFPN T0287 114 :DRSILG 1qspA 108 :DKSIIN T0287 132 :KMSIREMDSQIELYG 1qspA 114 :GINIDEDDEEIKIQV T0287 159 :DEEVNFYANLKTIEQYNDYVRDL 1qspA 129 :DDKDENSIYLILIAKALNQSRLE T0287 182 :LMKFDLEKYM 1qspA 154 :LARIELSKYY Number of specific fragments extracted= 8 number of extra gaps= 0 total=5235 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1806357619.pdb -s /var/tmp/to_scwrl_1806357619.seq -o /var/tmp/from_scwrl_1806357619.pdb > /var/tmp/scwrl_1806357619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1806357619.pdb Number of alignments=764 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1qspA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1qspA-t2k-muscle.a2m.gz # 1qspA read from T0287-1qspA-t2k-muscle.a2m.gz # found chain 1qspA in template set Warning: unaligning (T0287)Q173 because last residue in template chain is (1qspA)L167 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHT 1qspA 3 :TIPSEIINWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTE T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 1qspA 59 :LDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYYNTN Number of specific fragments extracted= 2 number of extra gaps= 0 total=5237 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1219234390.pdb -s /var/tmp/to_scwrl_1219234390.seq -o /var/tmp/from_scwrl_1219234390.pdb > /var/tmp/scwrl_1219234390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219234390.pdb Number of alignments=765 # command:# Prefix for input files set to 1sz9A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t04-global-adpstyle1.a2m # 1sz9A read from 1sz9A-T0287-t04-global-adpstyle1.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKII 1sz9A 5 :TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFV T0287 45 :KTMHDFFKQM 1sz9A 46 :DAIESRIEKC T0287 57 :NKG 1sz9A 58 :KQK T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESE 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNT T0287 95 :TMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFK 1sz9A 105 :LINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKASAAA Number of specific fragments extracted= 5 number of extra gaps= 2 total=5242 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1603484223.pdb -s /var/tmp/to_scwrl_1603484223.seq -o /var/tmp/from_scwrl_1603484223.pdb > /var/tmp/scwrl_1603484223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603484223.pdb Number of alignments=766 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t04-global-adpstyle5.a2m # 1sz9A read from 1sz9A-T0287-t04-global-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1sz9A 5 :TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAI T0287 48 :HDFFKQM 1sz9A 49 :ESRIEKC T0287 57 :NK 1sz9A 58 :KQ T0287 60 :ALDKVLR 1sz9A 66 :ALDSICK T0287 112 :KFDRSILGIFLPFFSK 1sz9A 73 :NVGSPYTIYFSRNLFN T0287 130 :MFKMSIREMDSQI 1sz9A 89 :LYKRTYLLVDNTT T0287 148 :NLPLLKLFVMTDEEVNFYA 1sz9A 102 :RTKLINMFKLWLNPNDTGL T0287 167 :NLKTIEQYNDYVR 1sz9A 124 :EGSALEKIEQFLI Number of specific fragments extracted= 8 number of extra gaps= 1 total=5250 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2130109493.pdb -s /var/tmp/to_scwrl_2130109493.seq -o /var/tmp/from_scwrl_2130109493.pdb > /var/tmp/scwrl_2130109493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130109493.pdb Number of alignments=767 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t04-local-adpstyle1.a2m # 1sz9A read from 1sz9A-T0287-t04-local-adpstyle1.a2m # found chain 1sz9A in template set T0287 61 :LDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 1sz9A 67 :LDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=5251 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_916272316.pdb -s /var/tmp/to_scwrl_916272316.seq -o /var/tmp/from_scwrl_916272316.pdb > /var/tmp/scwrl_916272316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_916272316.pdb Number of alignments=768 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t04-local-adpstyle5.a2m # 1sz9A read from 1sz9A-T0287-t04-local-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 47 :MHDFFKQM 1sz9A 48 :IESRIEKC T0287 57 :NK 1sz9A 58 :KQ T0287 59 :GALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1sz9A 65 :YALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKL Number of specific fragments extracted= 3 number of extra gaps= 1 total=5254 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1473692323.pdb -s /var/tmp/to_scwrl_1473692323.seq -o /var/tmp/from_scwrl_1473692323.pdb > /var/tmp/scwrl_1473692323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473692323.pdb Number of alignments=769 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t2k-global-adpstyle1.a2m # 1sz9A read from 1sz9A-T0287-t2k-global-adpstyle1.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 1sz9A 5 :TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKC T0287 54 :MHTNKG 1sz9A 58 :KQKLYA T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENP 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLW T0287 107 :NFLFSKFDRSILGIFLPFFSKPI 1sz9A 120 :LPLFEGSALEKIEQFLIKASAAA Number of specific fragments extracted= 4 number of extra gaps= 2 total=5258 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_729254049.pdb -s /var/tmp/to_scwrl_729254049.seq -o /var/tmp/from_scwrl_729254049.pdb > /var/tmp/scwrl_729254049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729254049.pdb Number of alignments=770 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t2k-global-adpstyle5.a2m # 1sz9A read from 1sz9A-T0287-t2k-global-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1sz9A 5 :TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAI T0287 48 :HDFFKQM 1sz9A 49 :ESRIEKC T0287 57 :NK 1sz9A 58 :KQ T0287 60 :ALDKVLRNYMKDYR 1sz9A 66 :ALDSICKNVGSPYT Number of specific fragments extracted= 4 number of extra gaps= 1 total=5262 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1378052958.pdb -s /var/tmp/to_scwrl_1378052958.seq -o /var/tmp/from_scwrl_1378052958.pdb > /var/tmp/scwrl_1378052958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1378052958.pdb Number of alignments=771 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t2k-local-adpstyle1.a2m # 1sz9A read from 1sz9A-T0287-t2k-local-adpstyle1.a2m # found chain 1sz9A in template set T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESET 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5263 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1749606053.pdb -s /var/tmp/to_scwrl_1749606053.seq -o /var/tmp/from_scwrl_1749606053.pdb > /var/tmp/scwrl_1749606053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749606053.pdb Number of alignments=772 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sz9A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1sz9A-T0287-t2k-local-adpstyle5.a2m # 1sz9A read from 1sz9A-T0287-t2k-local-adpstyle5.a2m # found chain 1sz9A in template set T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5264 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_112698415.pdb -s /var/tmp/to_scwrl_112698415.seq -o /var/tmp/from_scwrl_112698415.pdb > /var/tmp/scwrl_112698415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_112698415.pdb Number of alignments=773 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-simplesw-adpstyle1.a2m # 1sz9A read from T0287-1sz9A-simplesw-adpstyle1.a2m # found chain 1sz9A in template set T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESET 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5265 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1078505915.pdb -s /var/tmp/to_scwrl_1078505915.seq -o /var/tmp/from_scwrl_1078505915.pdb > /var/tmp/scwrl_1078505915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078505915.pdb Number of alignments=774 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-simplesw-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-simplesw-adpstyle5.a2m # found chain 1sz9A in template set T0287 59 :GALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1sz9A 65 :YALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5266 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1831895539.pdb -s /var/tmp/to_scwrl_1831895539.seq -o /var/tmp/from_scwrl_1831895539.pdb > /var/tmp/scwrl_1831895539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831895539.pdb Number of alignments=775 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-global-adpstyle1.a2m # 1sz9A read from T0287-1sz9A-t04-global-adpstyle1.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIE T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHA 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLIN T0287 130 :MFKMSIREMDSQIELYGTN 1sz9A 108 :MFKLWLNPNDTGLPLFEGS T0287 167 :NLKTIEQY 1sz9A 127 :ALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 6 number of extra gaps= 2 total=5272 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_990674298.pdb -s /var/tmp/to_scwrl_990674298.seq -o /var/tmp/from_scwrl_990674298.pdb > /var/tmp/scwrl_990674298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_990674298.pdb Number of alignments=776 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-global-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t04-global-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIE T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLI T0287 129 :IMFKMSIREMDSQIELYGT 1sz9A 107 :NMFKLWLNPNDTGLPLFEG T0287 166 :ANLKTIEQY 1sz9A 126 :SALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 6 number of extra gaps= 2 total=5278 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1469354146.pdb -s /var/tmp/to_scwrl_1469354146.seq -o /var/tmp/from_scwrl_1469354146.pdb > /var/tmp/scwrl_1469354146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1469354146.pdb Number of alignments=777 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLLK 1sz9A 117 :DTGLPLFE T0287 165 :YANLKTIEQY 1sz9A 125 :GSALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 7 number of extra gaps= 2 total=5285 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_213042110.pdb -s /var/tmp/to_scwrl_213042110.seq -o /var/tmp/from_scwrl_213042110.pdb > /var/tmp/scwrl_213042110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_213042110.pdb Number of alignments=778 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLL 1sz9A 117 :DTGLPLF T0287 167 :NLKTIEQYNDYVR 1sz9A 124 :EGSALEKIEQFLI T0287 192 :KEKGVQ 1sz9A 137 :KASAAA Number of specific fragments extracted= 7 number of extra gaps= 2 total=5292 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1424631092.pdb -s /var/tmp/to_scwrl_1424631092.seq -o /var/tmp/from_scwrl_1424631092.pdb > /var/tmp/scwrl_1424631092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424631092.pdb Number of alignments=779 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-local-adpstyle1.a2m # 1sz9A read from T0287-1sz9A-t04-local-adpstyle1.a2m # found chain 1sz9A in template set T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESET 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5293 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1182956421.pdb -s /var/tmp/to_scwrl_1182956421.seq -o /var/tmp/from_scwrl_1182956421.pdb > /var/tmp/scwrl_1182956421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182956421.pdb Number of alignments=780 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-local-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t04-local-adpstyle5.a2m # found chain 1sz9A in template set T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1sz9A 60 :KLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5294 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1198684071.pdb -s /var/tmp/to_scwrl_1198684071.seq -o /var/tmp/from_scwrl_1198684071.pdb > /var/tmp/scwrl_1198684071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1198684071.pdb Number of alignments=781 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPNF 1sz9A 114 :NPND T0287 147 :TNLPLL 1sz9A 118 :TGLPLF Number of specific fragments extracted= 4 number of extra gaps= 1 total=5298 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_739945469.pdb -s /var/tmp/to_scwrl_739945469.seq -o /var/tmp/from_scwrl_739945469.pdb > /var/tmp/scwrl_739945469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_739945469.pdb Number of alignments=782 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLL 1sz9A 117 :DTGLPLF T0287 167 :NLKTIEQYNDYVRD 1sz9A 124 :EGSALEKIEQFLIK Number of specific fragments extracted= 5 number of extra gaps= 1 total=5303 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_503433400.pdb -s /var/tmp/to_scwrl_503433400.seq -o /var/tmp/from_scwrl_503433400.pdb > /var/tmp/scwrl_503433400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_503433400.pdb Number of alignments=783 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-global-adpstyle1.a2m # 1sz9A read from T0287-1sz9A-t06-global-adpstyle1.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIE T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHA 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLIN T0287 130 :MFKMSIREMDSQIELYGTN 1sz9A 108 :MFKLWLNPNDTGLPLFEGS T0287 167 :NLKTIEQY 1sz9A 127 :ALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 6 number of extra gaps= 2 total=5309 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1819152435.pdb -s /var/tmp/to_scwrl_1819152435.seq -o /var/tmp/from_scwrl_1819152435.pdb > /var/tmp/scwrl_1819152435.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819152435.pdb Number of alignments=784 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-global-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t06-global-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIE T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLI T0287 129 :IMFKMSIREMDSQIELYGT 1sz9A 107 :NMFKLWLNPNDTGLPLFEG T0287 166 :ANLKTIEQY 1sz9A 126 :SALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 6 number of extra gaps= 2 total=5315 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_992997136.pdb -s /var/tmp/to_scwrl_992997136.seq -o /var/tmp/from_scwrl_992997136.pdb > /var/tmp/scwrl_992997136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_992997136.pdb Number of alignments=785 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLLK 1sz9A 117 :DTGLPLFE T0287 165 :YANLKTIEQY 1sz9A 125 :GSALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 7 number of extra gaps= 2 total=5322 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1405122473.pdb -s /var/tmp/to_scwrl_1405122473.seq -o /var/tmp/from_scwrl_1405122473.pdb > /var/tmp/scwrl_1405122473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1405122473.pdb Number of alignments=786 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLL 1sz9A 117 :DTGLPLF T0287 167 :NLKTIEQYNDYVR 1sz9A 124 :EGSALEKIEQFLI T0287 192 :KEKGVQ 1sz9A 137 :KASAAA Number of specific fragments extracted= 7 number of extra gaps= 2 total=5329 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_77976945.pdb -s /var/tmp/to_scwrl_77976945.seq -o /var/tmp/from_scwrl_77976945.pdb > /var/tmp/scwrl_77976945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_77976945.pdb Number of alignments=787 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-local-adpstyle1.a2m # 1sz9A read from T0287-1sz9A-t06-local-adpstyle1.a2m # found chain 1sz9A in template set T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESET 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5330 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_572826422.pdb -s /var/tmp/to_scwrl_572826422.seq -o /var/tmp/from_scwrl_572826422.pdb > /var/tmp/scwrl_572826422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_572826422.pdb Number of alignments=788 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-local-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t06-local-adpstyle5.a2m # found chain 1sz9A in template set T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1sz9A 60 :KLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5331 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1983917919.pdb -s /var/tmp/to_scwrl_1983917919.seq -o /var/tmp/from_scwrl_1983917919.pdb > /var/tmp/scwrl_1983917919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983917919.pdb Number of alignments=789 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPNF 1sz9A 114 :NPND T0287 147 :TNLPLL 1sz9A 118 :TGLPLF Number of specific fragments extracted= 4 number of extra gaps= 1 total=5335 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_295131422.pdb -s /var/tmp/to_scwrl_295131422.seq -o /var/tmp/from_scwrl_295131422.pdb > /var/tmp/scwrl_295131422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295131422.pdb Number of alignments=790 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLL 1sz9A 117 :DTGLPLF T0287 167 :NLKTIEQYNDYVRD 1sz9A 124 :EGSALEKIEQFLIK Number of specific fragments extracted= 5 number of extra gaps= 1 total=5340 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_939356740.pdb -s /var/tmp/to_scwrl_939356740.seq -o /var/tmp/from_scwrl_939356740.pdb > /var/tmp/scwrl_939356740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939356740.pdb Number of alignments=791 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-global-adpstyle1.a2m # 1sz9A read from T0287-1sz9A-t2k-global-adpstyle1.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIE T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHA 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLIN T0287 130 :MFKMSIREMDSQIELYGTN 1sz9A 108 :MFKLWLNPNDTGLPLFEGS T0287 167 :NLKTIEQY 1sz9A 127 :ALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 6 number of extra gaps= 2 total=5346 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_372131162.pdb -s /var/tmp/to_scwrl_372131162.seq -o /var/tmp/from_scwrl_372131162.pdb > /var/tmp/scwrl_372131162.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_372131162.pdb Number of alignments=792 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-global-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t2k-global-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHD 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIE T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLH 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLI T0287 129 :IMFKMSIREMDSQIELYGT 1sz9A 107 :NMFKLWLNPNDTGLPLFEG T0287 166 :ANLKTIEQY 1sz9A 126 :SALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 6 number of extra gaps= 2 total=5352 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1578261780.pdb -s /var/tmp/to_scwrl_1578261780.seq -o /var/tmp/from_scwrl_1578261780.pdb > /var/tmp/scwrl_1578261780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1578261780.pdb Number of alignments=793 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NNM 1sz9A 3 :HDT T0287 6 :RKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 10 :KDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLLK 1sz9A 117 :DTGLPLFE T0287 165 :YANLKTIEQY 1sz9A 125 :GSALEKIEQF T0287 190 :YMKEKGVQ 1sz9A 135 :LIKASAAA Number of specific fragments extracted= 7 number of extra gaps= 2 total=5359 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_755372795.pdb -s /var/tmp/to_scwrl_755372795.seq -o /var/tmp/from_scwrl_755372795.pdb > /var/tmp/scwrl_755372795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755372795.pdb Number of alignments=794 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)S2 because first residue in template chain is (1sz9A)D2 Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 3 :NN 1sz9A 3 :HD T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLL 1sz9A 117 :DTGLPLF T0287 167 :NLKTIEQYNDYVR 1sz9A 124 :EGSALEKIEQFLI T0287 192 :KEKGVQ 1sz9A 137 :KASAAA Number of specific fragments extracted= 7 number of extra gaps= 2 total=5366 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_31005134.pdb -s /var/tmp/to_scwrl_31005134.seq -o /var/tmp/from_scwrl_31005134.pdb > /var/tmp/scwrl_31005134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31005134.pdb Number of alignments=795 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-local-adpstyle1.a2m # 1sz9A read from T0287-1sz9A-t2k-local-adpstyle1.a2m # found chain 1sz9A in template set T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESET 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5367 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_650012525.pdb -s /var/tmp/to_scwrl_650012525.seq -o /var/tmp/from_scwrl_650012525.pdb > /var/tmp/scwrl_650012525.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_650012525.pdb Number of alignments=796 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-local-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t2k-local-adpstyle5.a2m # found chain 1sz9A in template set T0287 54 :MHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELL 1sz9A 60 :KLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5368 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_211373372.pdb -s /var/tmp/to_scwrl_211373372.seq -o /var/tmp/from_scwrl_211373372.pdb > /var/tmp/scwrl_211373372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211373372.pdb Number of alignments=797 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPNF 1sz9A 114 :NPND T0287 147 :TNLPLL 1sz9A 118 :TGLPLF Number of specific fragments extracted= 4 number of extra gaps= 1 total=5372 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_13630980.pdb -s /var/tmp/to_scwrl_13630980.seq -o /var/tmp/from_scwrl_13630980.pdb > /var/tmp/scwrl_13630980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13630980.pdb Number of alignments=798 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1sz9A read from T0287-1sz9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1sz9A in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 T0287 5 :MRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDF 1sz9A 9 :VKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 58 :KQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 105 :NPN 1sz9A 114 :NPN T0287 146 :GTNLPLL 1sz9A 117 :DTGLPLF T0287 167 :NLKTIEQYNDYVRD 1sz9A 124 :EGSALEKIEQFLIK Number of specific fragments extracted= 5 number of extra gaps= 1 total=5377 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1566284840.pdb -s /var/tmp/to_scwrl_1566284840.seq -o /var/tmp/from_scwrl_1566284840.pdb > /var/tmp/scwrl_1566284840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566284840.pdb Number of alignments=799 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1sz9A-t04-muscle.a2m.gz # 1sz9A read from T0287-1sz9A-t04-muscle.a2m.gz # found chain 1sz9A in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)A199 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIID 1sz9A 5 :TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVD T0287 46 :TMHDFFKQM 1sz9A 47 :AIESRIEKC T0287 57 :NKG 1sz9A 58 :KQK T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 109 :LFSKFDRSILGIFLPFFSKPIM 1sz9A 111 :LWLNPNDTGLPLFEGSALEKIE T0287 188 :EKYMKEKGVQ 1sz9A 133 :QFLIKASAAA Number of specific fragments extracted= 6 number of extra gaps= 2 total=5383 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1685065695.pdb -s /var/tmp/to_scwrl_1685065695.seq -o /var/tmp/from_scwrl_1685065695.pdb > /var/tmp/scwrl_1685065695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1685065695.pdb Number of alignments=800 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1sz9A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1sz9A-t2k-muscle.a2m.gz # 1sz9A read from T0287-1sz9A-t2k-muscle.a2m.gz # found chain 1sz9A in template set Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)P57 Warning: unaligning (T0287)Q53 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)P57 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1sz9A)E144 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1sz9A)E144 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 1sz9A 5 :TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKC T0287 54 :MHTNKG 1sz9A 58 :KQKLYA T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1sz9A 66 :ALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFK T0287 109 :LFSKFDRSILGIFLP 1sz9A 111 :LWLNPNDTGLPLFEG T0287 147 :TNLPLLKLFVMTDEEVN 1sz9A 126 :SALEKIEQFLIKASAAA Number of specific fragments extracted= 5 number of extra gaps= 2 total=5388 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_742885030.pdb -s /var/tmp/to_scwrl_742885030.seq -o /var/tmp/from_scwrl_742885030.pdb > /var/tmp/scwrl_742885030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_742885030.pdb Number of alignments=801 # command:# Prefix for input files set to 1tmxA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-global-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t04-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 6 :RKLFSMIADSKDKKEKLIESLQEN 1tmxA 4 :PVSAEQQAREQDLVERVLRSFDAT T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 1tmxA 28 :ADPRLKQVMQALTRHLHAFLREVRLTEAEW T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLF 1tmxA 58 :ETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAMNNEAHGD T0287 111 :SKFDRSILGIFLPFFSKPIMFKMSI 1tmxA 116 :SPRIESGGDIAGGAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 141 :QIELYGT 1tmxA 198 :PIPHDGP T0287 148 :NLPLLK 1tmxA 218 :RASHLH T0287 156 :VMTDEEVNFY 1tmxA 226 :VTAPGRRTLV T0287 168 :L 1tmxA 238 :I T0287 169 :KTIEQYND 1tmxA 246 :LDRDSVFG T0287 179 :RDLLMK 1tmxA 256 :DSLVKS T0287 187 :LE 1tmxA 264 :RQ T0287 191 :MK 1tmxA 268 :GA T0287 195 :GVQNA 1tmxA 272 :PGGRE Number of specific fragments extracted= 14 number of extra gaps= 7 total=5402 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_796854152.pdb -s /var/tmp/to_scwrl_796854152.seq -o /var/tmp/from_scwrl_796854152.pdb > /var/tmp/scwrl_796854152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796854152.pdb Number of alignments=802 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-global-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t04-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)N4 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)E193 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 6 :RKLFSMIADSKDKKEKLIESLQEN 1tmxA 4 :PVSAEQQAREQDLVERVLRSFDAT T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 1tmxA 28 :ADPRLKQVMQALTRHLHAFLREVRLTEAEWETG T0287 65 :LRNYMKDYRAVIKSIGVDKF 1tmxA 71 :TNERRQEFILLSDVLGASMQ T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRSI 1tmxA 91 :TIAMNNEAHGDATEATVFGPFFVEGSPRIES T0287 118 :LGIFLPFFSKPIMFKMSI 1tmxA 123 :GDIAGGAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :Y 1tmxA 197 :Y T0287 146 :GT 1tmxA 203 :GP T0287 148 :NLPLLK 1tmxA 218 :RASHLH T0287 156 :VMTDEEVNFY 1tmxA 226 :VTAPGRRTLV T0287 167 :NLKTIEQYND 1tmxA 244 :ELLDRDSVFG T0287 179 :RDLLMK 1tmxA 256 :DSLVKS T0287 187 :LE 1tmxA 264 :RQ T0287 191 :MK 1tmxA 268 :GA T0287 195 :GVQNA 1tmxA 289 :VLAPA Number of specific fragments extracted= 16 number of extra gaps= 7 total=5418 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1287188101.pdb -s /var/tmp/to_scwrl_1287188101.seq -o /var/tmp/from_scwrl_1287188101.pdb > /var/tmp/scwrl_1287188101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287188101.pdb Number of alignments=803 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-local-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t04-local-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 127 :KPIMFKMSI 1tmxA 132 :EPCWVEGTV T0287 138 :MD 1tmxA 143 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=5420 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t04-local-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t04-local-adpstyle5.a2m # found chain 1tmxA in training set T0287 85 :KKVYRLLESETMELLHAI 1tmxA 76 :QEFILLSDVLGASMQTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5421 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-global-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t06-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLN 1tmxA 13 :EQDLVERVLRSFDATADPRLKQVMQALTRHLHA T0287 40 :IIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKF 1tmxA 46 :FLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQ T0287 87 :VYRLLESETMELLHAIAENPNFLFSKFDRS 1tmxA 91 :TIAMNNEAHGDATEATVFGPFFVEGSPRIE T0287 117 :IL 1tmxA 175 :AR T0287 121 :F 1tmxA 179 :L T0287 122 :LPFFSK 1tmxA 218 :RASHLH T0287 130 :MFKMSIREMD 1tmxA 226 :VTAPGRRTLV T0287 142 :IELYGT 1tmxA 238 :IFVEGD T0287 150 :PLLKLFVMTD 1tmxA 244 :ELLDRDSVFG T0287 162 :VNFYAN 1tmxA 256 :DSLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 13 number of extra gaps= 7 total=5434 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_855583445.pdb -s /var/tmp/to_scwrl_855583445.seq -o /var/tmp/from_scwrl_855583445.pdb > /var/tmp/scwrl_855583445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_855583445.pdb Number of alignments=804 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-global-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t06-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIE 1tmxA 13 :EQDLVERVLRSFDATADPRLKQVM T0287 25 :SLQENEL 1tmxA 38 :ALTRHLH T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 1tmxA 52 :LTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLG T0287 67 :NYM 1tmxA 88 :SMQ T0287 70 :KD 1tmxA 98 :AH T0287 72 :YRAVIKSIGVDKFKKVY 1tmxA 114 :EGSPRIESGGDIAGGAA T0287 89 :RLLESETMELLHA 1tmxA 146 :NPVPDARIEVWEA T0287 102 :IAENPNFL 1tmxA 167 :QYDDDRTA T0287 117 :IL 1tmxA 175 :AR T0287 119 :GIFLPFFSKPI 1tmxA 185 :GGYAFWAITPT T0287 130 :MFKMSIREMD 1tmxA 226 :VTAPGRRTLV T0287 142 :IELYGT 1tmxA 238 :IFVEGD T0287 150 :PLLKLFVMTD 1tmxA 244 :ELLDRDSVFG T0287 163 :NFYAN 1tmxA 257 :SLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 17 number of extra gaps= 5 total=5451 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1875360068.pdb -s /var/tmp/to_scwrl_1875360068.seq -o /var/tmp/from_scwrl_1875360068.pdb > /var/tmp/scwrl_1875360068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1875360068.pdb Number of alignments=805 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-local-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t06-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSI 1tmxA 42 :HLHAFLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAMNNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5452 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_971599994.pdb -s /var/tmp/to_scwrl_971599994.seq -o /var/tmp/from_scwrl_971599994.pdb > /var/tmp/scwrl_971599994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_971599994.pdb Number of alignments=806 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t06-local-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t06-local-adpstyle5.a2m # found chain 1tmxA in training set T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFS 1tmxA 44 :HAFLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=5453 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1846257742.pdb -s /var/tmp/to_scwrl_1846257742.seq -o /var/tmp/from_scwrl_1846257742.pdb > /var/tmp/scwrl_1846257742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1846257742.pdb Number of alignments=807 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-global-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t2k-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLI 1tmxA 13 :EQDLVERVLRSFDATADPRLKQV T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1tmxA 44 :HAFLREVRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAM T0287 75 :VIKSIGVDKFKKVYRLLESETMELLHAI 1tmxA 113 :VEGSPRIESGGDIAGGAAGEPCWVEGTV T0287 105 :NPNFLFSKFDRSI 1tmxA 159 :DDDGFYDVQYDDD T0287 119 :GIFLPFFSKP 1tmxA 185 :GGYAFWAITP T0287 130 :MFKMSIREMD 1tmxA 226 :VTAPGRRTLV T0287 142 :IELYGT 1tmxA 238 :IFVEGD T0287 150 :PLLKLFVMTD 1tmxA 244 :ELLDRDSVFG T0287 162 :VNFYAN 1tmxA 256 :DSLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 12 number of extra gaps= 6 total=5465 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1197230567.pdb -s /var/tmp/to_scwrl_1197230567.seq -o /var/tmp/from_scwrl_1197230567.pdb > /var/tmp/scwrl_1197230567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197230567.pdb Number of alignments=808 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-global-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t2k-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K189 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQEN 1tmxA 13 :EQDLVERVLRSFDATADPRLKQVMQALTR T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRA 1tmxA 50 :VRLTEAEWETGIGFLTDAGHVTNERRQEFILLSDVLGASMQTIAM T0287 75 :VIKSIGVDKFKKVYRLLESE 1tmxA 113 :VEGSPRIESGGDIAGGAAGE T0287 95 :TMELLHA 1tmxA 152 :RIEVWEA T0287 105 :NPNFLFSKFDRS 1tmxA 159 :DDDGFYDVQYDD T0287 117 :ILGIFLPFFSKPIMFKMSI 1tmxA 183 :PDGGYAFWAITPTPYPIPH T0287 136 :REMDSQIELYGTNLPLLK 1tmxA 206 :GRMLAATGRSPMRASHLH T0287 156 :VMTDEEVNFY 1tmxA 226 :VTAPGRRTLV T0287 168 :LKTIEQYND 1tmxA 245 :LLDRDSVFG T0287 179 :RDLLMK 1tmxA 256 :DSLVKS T0287 187 :LE 1tmxA 264 :RQ T0287 191 :MK 1tmxA 272 :PG T0287 193 :EKGV 1tmxA 278 :DGPW T0287 197 :QNA 1tmxA 291 :APA Number of specific fragments extracted= 14 number of extra gaps= 5 total=5479 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1184642104.pdb -s /var/tmp/to_scwrl_1184642104.seq -o /var/tmp/from_scwrl_1184642104.pdb > /var/tmp/scwrl_1184642104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184642104.pdb Number of alignments=809 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-local-adpstyle1.a2m # 1tmxA read from 1tmxA-T0287-t2k-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 61 :LDKVLRNYMKDYRAVIKSIGV 1tmxA 32 :LKQVMQALTRHLHAFLREVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5480 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1123405187.pdb -s /var/tmp/to_scwrl_1123405187.seq -o /var/tmp/from_scwrl_1123405187.pdb > /var/tmp/scwrl_1123405187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1123405187.pdb Number of alignments=810 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tmxA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1tmxA-T0287-t2k-local-adpstyle5.a2m # 1tmxA read from 1tmxA-T0287-t2k-local-adpstyle5.a2m # found chain 1tmxA in training set T0287 84 :FKKVYRLLESETMELLHAIAENP 1tmxA 75 :RQEFILLSDVLGASMQTIAMNNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5481 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_232703343.pdb -s /var/tmp/to_scwrl_232703343.seq -o /var/tmp/from_scwrl_232703343.pdb > /var/tmp/scwrl_232703343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_232703343.pdb Number of alignments=811 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-simplesw-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-simplesw-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5482 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-simplesw-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-simplesw-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5482 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t04-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPI 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRI T0287 137 :EMDSQIELYGTNLPLLKLFVM 1tmxA 120 :ESGGDIAGGAAGEPCWVEGTV T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRTAAR T0287 196 :VQNA 1tmxA 179 :LLSG Number of specific fragments extracted= 8 number of extra gaps= 2 total=5490 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_235842529.pdb -s /var/tmp/to_scwrl_235842529.seq -o /var/tmp/from_scwrl_235842529.pdb > /var/tmp/scwrl_235842529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_235842529.pdb Number of alignments=812 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 T0287 4 :NM 1tmxA 4 :PV T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 6 :SAEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAVI 1tmxA 62 :GFLTDAGHVT T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1tmxA 72 :NERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAG T0287 138 :MDSQ 1tmxA 137 :EGTV T0287 144 :LYGTNLPLLKLFVMTDEEVNFY 1tmxA 143 :TDGNPVPDARIEVWEADDDGFY T0287 180 :DLLMKFDLEKY 1tmxA 165 :DVQYDDDRTAA T0287 193 :E 1tmxA 176 :R Number of specific fragments extracted= 9 number of extra gaps= 2 total=5499 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1863350656.pdb -s /var/tmp/to_scwrl_1863350656.seq -o /var/tmp/from_scwrl_1863350656.pdb > /var/tmp/scwrl_1863350656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1863350656.pdb Number of alignments=813 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEG T0287 126 :SKPIMFKMSI 1tmxA 131 :GEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 184 :KFDLEKYMKEKGVQN 1tmxA 202 :DGPVGRMLAATGRSP Number of specific fragments extracted= 11 number of extra gaps= 2 total=5510 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_736136743.pdb -s /var/tmp/to_scwrl_736136743.seq -o /var/tmp/from_scwrl_736136743.pdb > /var/tmp/scwrl_736136743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736136743.pdb Number of alignments=814 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 185 :FDLEKYMKEKGVQN 1tmxA 203 :GPVGRMLAATGRSP Number of specific fragments extracted= 12 number of extra gaps= 2 total=5522 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2054994964.pdb -s /var/tmp/to_scwrl_2054994964.seq -o /var/tmp/from_scwrl_2054994964.pdb > /var/tmp/scwrl_2054994964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2054994964.pdb Number of alignments=815 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t04-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5523 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-local-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5523 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDAT T0287 117 :ILGIFLPFFSKP 1tmxA 104 :EATVFGPFFVEG T0287 135 :IREMDSQIELYG 1tmxA 116 :SPRIESGGDIAG T0287 147 :TNLPLLKLFVM 1tmxA 130 :AGEPCWVEGTV T0287 160 :EEVN 1tmxA 143 :TDGN Number of specific fragments extracted= 8 number of extra gaps= 1 total=5531 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_708864145.pdb -s /var/tmp/to_scwrl_708864145.seq -o /var/tmp/from_scwrl_708864145.pdb > /var/tmp/scwrl_708864145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708864145.pdb Number of alignments=816 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEE 1tmxA 145 :GNPVPDARIEVWEADD Number of specific fragments extracted= 8 number of extra gaps= 1 total=5539 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2141259216.pdb -s /var/tmp/to_scwrl_2141259216.seq -o /var/tmp/from_scwrl_2141259216.pdb > /var/tmp/scwrl_2141259216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2141259216.pdb Number of alignments=817 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t06-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPI 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRI T0287 137 :EMDSQIELYGTNLPLLKLFVM 1tmxA 120 :ESGGDIAGGAAGEPCWVEGTV T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRTAAR T0287 196 :VQNA 1tmxA 179 :LLSG Number of specific fragments extracted= 8 number of extra gaps= 2 total=5547 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2132971910.pdb -s /var/tmp/to_scwrl_2132971910.seq -o /var/tmp/from_scwrl_2132971910.pdb > /var/tmp/scwrl_2132971910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2132971910.pdb Number of alignments=818 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 T0287 4 :NM 1tmxA 4 :PV T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 6 :SAEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAVI 1tmxA 62 :GFLTDAGHVT T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1tmxA 72 :NERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAG T0287 138 :MDSQ 1tmxA 137 :EGTV T0287 144 :LYGTNLPLLKLFVMTDEEVNFY 1tmxA 143 :TDGNPVPDARIEVWEADDDGFY T0287 180 :DLLMKFDLEKY 1tmxA 165 :DVQYDDDRTAA T0287 193 :E 1tmxA 176 :R Number of specific fragments extracted= 9 number of extra gaps= 2 total=5556 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1281690566.pdb -s /var/tmp/to_scwrl_1281690566.seq -o /var/tmp/from_scwrl_1281690566.pdb > /var/tmp/scwrl_1281690566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281690566.pdb Number of alignments=819 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEG T0287 126 :SKPIMFKMSI 1tmxA 131 :GEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 184 :KFDLEKYMKEKGVQN 1tmxA 202 :DGPVGRMLAATGRSP Number of specific fragments extracted= 11 number of extra gaps= 2 total=5567 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1977693489.pdb -s /var/tmp/to_scwrl_1977693489.seq -o /var/tmp/from_scwrl_1977693489.pdb > /var/tmp/scwrl_1977693489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977693489.pdb Number of alignments=820 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 185 :FDLEKYMKEKGVQN 1tmxA 203 :GPVGRMLAATGRSP Number of specific fragments extracted= 12 number of extra gaps= 2 total=5579 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_280619685.pdb -s /var/tmp/to_scwrl_280619685.seq -o /var/tmp/from_scwrl_280619685.pdb > /var/tmp/scwrl_280619685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280619685.pdb Number of alignments=821 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t06-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5580 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-local-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5580 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDAT T0287 117 :ILGIFLPFFSKP 1tmxA 104 :EATVFGPFFVEG T0287 135 :IREMDSQIELYG 1tmxA 116 :SPRIESGGDIAG T0287 147 :TNLPLLKLFVM 1tmxA 130 :AGEPCWVEGTV T0287 160 :EEVN 1tmxA 143 :TDGN Number of specific fragments extracted= 8 number of extra gaps= 1 total=5588 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_73563659.pdb -s /var/tmp/to_scwrl_73563659.seq -o /var/tmp/from_scwrl_73563659.pdb > /var/tmp/scwrl_73563659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_73563659.pdb Number of alignments=822 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEE 1tmxA 145 :GNPVPDARIEVWEADD Number of specific fragments extracted= 8 number of extra gaps= 1 total=5596 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_202341004.pdb -s /var/tmp/to_scwrl_202341004.seq -o /var/tmp/from_scwrl_202341004.pdb > /var/tmp/scwrl_202341004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202341004.pdb Number of alignments=823 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t2k-global-adpstyle1.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQIKT 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQALT T0287 47 :MHDFFKQMHTNKGALDKVL 1tmxA 43 :LHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPI 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRI T0287 137 :EMDSQIELYGTNLPLLKLFVM 1tmxA 120 :ESGGDIAGGAAGEPCWVEGTV T0287 160 :EEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKE 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRTAAR T0287 196 :VQNA 1tmxA 179 :LLSG Number of specific fragments extracted= 8 number of extra gaps= 2 total=5604 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1858881465.pdb -s /var/tmp/to_scwrl_1858881465.seq -o /var/tmp/from_scwrl_1858881465.pdb > /var/tmp/scwrl_1858881465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1858881465.pdb Number of alignments=824 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-global-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)K194 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 T0287 4 :NM 1tmxA 4 :PV T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 6 :SAEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAVI 1tmxA 62 :GFLTDAGHVT T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIRE 1tmxA 72 :NERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAG T0287 138 :MDSQ 1tmxA 137 :EGTV T0287 144 :LYGTNLPLLKLFVMTDEEVNFY 1tmxA 143 :TDGNPVPDARIEVWEADDDGFY T0287 180 :DLLMKFDLEKY 1tmxA 165 :DVQYDDDRTAA T0287 193 :E 1tmxA 176 :R Number of specific fragments extracted= 9 number of extra gaps= 2 total=5613 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_828936455.pdb -s /var/tmp/to_scwrl_828936455.seq -o /var/tmp/from_scwrl_828936455.pdb > /var/tmp/scwrl_828936455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_828936455.pdb Number of alignments=825 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFF 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEG T0287 126 :SKPIMFKMSI 1tmxA 131 :GEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEEVNFYANL 1tmxA 145 :GNPVPDARIEVWEADDDGFYDVQ T0287 174 :YND 1tmxA 168 :YDD T0287 184 :KFDLEKYMKEKGVQ 1tmxA 202 :DGPVGRMLAATGRS Number of specific fragments extracted= 10 number of extra gaps= 1 total=5623 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_233346139.pdb -s /var/tmp/to_scwrl_233346139.seq -o /var/tmp/from_scwrl_233346139.pdb > /var/tmp/scwrl_233346139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_233346139.pdb Number of alignments=826 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)S2 because first residue in template chain is (1tmxA)S2 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T3 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 T0287 4 :NMR 1tmxA 4 :PVS T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MDSQ 1tmxA 143 :TDGN T0287 142 :IEL 1tmxA 153 :IEV T0287 145 :YGTNLPLLK 1tmxA 168 :YDDDRTAAR T0287 156 :VMTDEEVNFY 1tmxA 179 :LLSGPDGGYA T0287 185 :FDLEKYMKEKGVQN 1tmxA 203 :GPVGRMLAATGRSP Number of specific fragments extracted= 12 number of extra gaps= 2 total=5635 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_361410343.pdb -s /var/tmp/to_scwrl_361410343.seq -o /var/tmp/from_scwrl_361410343.pdb > /var/tmp/scwrl_361410343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_361410343.pdb Number of alignments=827 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-adpstyle1.a2m # 1tmxA read from T0287-1tmxA-t2k-local-adpstyle1.a2m # found chain 1tmxA in training set T0287 120 :IFLPFF 1tmxA 107 :VFGPFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5636 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-local-adpstyle5.a2m # found chain 1tmxA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5636 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQI 1tmxA 7 :AEQQAREQDLVERVLRSFDATADPRLKQVMQA T0287 45 :KTMHDFFKQMHTNKGALDKVL 1tmxA 41 :RHLHAFLREVRLTEAEWETGI T0287 67 :NYMKDYRAV 1tmxA 62 :GFLTDAGHV T0287 81 :VDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRS 1tmxA 71 :TNERRQEFILLSDVLGASMQTIAMNNEAHGDATEAT T0287 120 :IFLPFFSKP 1tmxA 107 :VFGPFFVEG T0287 135 :IREMDSQIELYG 1tmxA 116 :SPRIESGGDIAG T0287 147 :TNLPLLKLFVM 1tmxA 130 :AGEPCWVEGTV T0287 160 :EEVN 1tmxA 143 :TDGN Number of specific fragments extracted= 8 number of extra gaps= 1 total=5644 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1040309827.pdb -s /var/tmp/to_scwrl_1040309827.seq -o /var/tmp/from_scwrl_1040309827.pdb > /var/tmp/scwrl_1040309827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1040309827.pdb Number of alignments=828 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tmxA read from T0287-1tmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tmxA in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 T0287 13 :ADSKDKKEKLIESLQE 1tmxA 7 :AEQQAREQDLVERVLR T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1tmxA 25 :DATADPRLKQVMQALTRHLHAFLREVRLTEAEWET T0287 65 :LRNYMKDYRAV 1tmxA 60 :GIGFLTDAGHV T0287 80 :GVDKFKKVYRLLESETMELLHAIAENPN 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHG T0287 108 :FLFSKFDRSILGIFL 1tmxA 111 :FFVEGSPRIESGGDI T0287 123 :PFFSKPIMFKMSI 1tmxA 128 :GAAGEPCWVEGTV T0287 138 :MD 1tmxA 143 :TD T0287 146 :GTNLPLLKLFVMTDEE 1tmxA 145 :GNPVPDARIEVWEADD Number of specific fragments extracted= 8 number of extra gaps= 1 total=5652 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_246977119.pdb -s /var/tmp/to_scwrl_246977119.seq -o /var/tmp/from_scwrl_246977119.pdb > /var/tmp/scwrl_246977119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246977119.pdb Number of alignments=829 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1tmxA-t04-muscle.a2m.gz # 1tmxA read from T0287-1tmxA-t04-muscle.a2m.gz # found chain 1tmxA in training set Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)T170 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)I171 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)K184 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMK 1tmxA 70 :VTNERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAGGAAGEPCWVEGT T0287 75 :V 1tmxA 140 :V T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNF 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRT T0287 109 :LF 1tmxA 175 :AR T0287 113 :FDRSILGIFLPFFSKPIMFKM 1tmxA 179 :LLSGPDGGYAFWAITPTPYPI T0287 134 :SIREMD 1tmxA 218 :RASHLH T0287 142 :IELYGTNLPL 1tmxA 226 :VTAPGRRTLV T0287 154 :LFVMTDEEVNFYANLK 1tmxA 238 :IFVEGDELLDRDSVFG T0287 172 :EQY 1tmxA 256 :DSL T0287 175 :N 1tmxA 261 :S T0287 178 :VR 1tmxA 264 :RQ T0287 182 :LM 1tmxA 268 :GA T0287 186 :DLEK 1tmxA 272 :PGGR T0287 190 :YMKEKGVQNA 1tmxA 284 :VRFDIVLAPA Number of specific fragments extracted= 14 number of extra gaps= 8 total=5666 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1927695184.pdb -s /var/tmp/to_scwrl_1927695184.seq -o /var/tmp/from_scwrl_1927695184.pdb > /var/tmp/scwrl_1927695184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1927695184.pdb Number of alignments=830 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t06-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1tmxA-t06-muscle.a2m.gz # 1tmxA read from T0287-1tmxA-t06-muscle.a2m.gz # found chain 1tmxA in training set Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)K70 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)A267 Warning: unaligning (T0287)D176 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)T271 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)T271 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNY 1tmxA 73 :ERRQEFILLSDVLGASMQTIAMNNEAHGDATEATVFGPFFVEGSPRIESGGDIAGGAAGEPCWVEGTV T0287 71 :DYRAVIKSIGVDKFKK 1tmxA 143 :TDGNPVPDARIEVWEA T0287 87 :VYRLLESETMELLH 1tmxA 163 :FYDVQYDDDRTAAR T0287 103 :AENPNFLFSKFDRSILGIFL 1tmxA 179 :LLSGPDGGYAFWAITPTPYP T0287 123 :PFFSKPIM 1tmxA 216 :PMRASHLH T0287 133 :MSIREMDSQI 1tmxA 226 :VTAPGRRTLV T0287 144 :LYGTNLPLLKLFVMTD 1tmxA 238 :IFVEGDELLDRDSVFG T0287 162 :VNFYAN 1tmxA 256 :DSLVKS T0287 170 :TI 1tmxA 264 :RQ T0287 174 :YN 1tmxA 268 :GA T0287 178 :VRDLLMKFDLEKYMKEKGVQNA 1tmxA 272 :PGGREIDGPWSRVRFDIVLAPA Number of specific fragments extracted= 11 number of extra gaps= 8 total=5677 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_577891875.pdb -s /var/tmp/to_scwrl_577891875.seq -o /var/tmp/from_scwrl_577891875.pdb > /var/tmp/scwrl_577891875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577891875.pdb Number of alignments=831 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1tmxA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1tmxA-t2k-muscle.a2m.gz # 1tmxA read from T0287-1tmxA-t2k-muscle.a2m.gz # found chain 1tmxA in training set Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)D142 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)D142 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H178 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H178 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)M225 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)M225 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)H237 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)H237 Warning: unaligning (T0287)E172 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)K255 Warning: unaligning (T0287)Q173 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)K255 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)E263 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (1tmxA)E263 Warning: unaligning (T0287)K184 because of BadResidue code BAD_PEPTIDE in next template residue (1tmxA)A267 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 1tmxA 36 :MQALTRHLHAFLREVRLTEAEWETGIG T0287 28 :ENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 1tmxA 95 :NNEAHGDATEATVFGPFFVEGSPRIESGGDIAGGAAGEPCWVEG T0287 74 :AV 1tmxA 139 :TV T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAENPNF 1tmxA 143 :TDGNPVPDARIEVWEADDDGFYDVQYDDDRT T0287 109 :LF 1tmxA 175 :AR T0287 113 :FDRSILGIFLPFFSKPIMFKMS 1tmxA 179 :LLSGPDGGYAFWAITPTPYPIP T0287 135 :IREMDSQ 1tmxA 217 :MRASHLH T0287 144 :LYGTNLPLLK 1tmxA 226 :VTAPGRRTLV T0287 156 :VMTDEEVNFYANLKTI 1tmxA 238 :IFVEGDELLDRDSVFG T0287 174 :YNDYVR 1tmxA 256 :DSLVKS T0287 182 :LM 1tmxA 264 :RQ T0287 185 :FDLEKYMKEKGVQNA 1tmxA 279 :GPWSRVRFDIVLAPA Number of specific fragments extracted= 12 number of extra gaps= 7 total=5689 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_989862149.pdb -s /var/tmp/to_scwrl_989862149.seq -o /var/tmp/from_scwrl_989862149.pdb > /var/tmp/scwrl_989862149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_989862149.pdb Number of alignments=832 # command:# Prefix for input files set to 1ytzT/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-global-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t04-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 8 :LFSMIADSKDKKEKLIESL 1ytzT 160 :YSSYLAKADQKRGKKQTAR T0287 35 :DEKKKIIDQIK 1ytzT 179 :ETKKKVLAERR T0287 53 :QMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLL 1ytzT 190 :KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIK T0287 92 :ESETMELLHAIAENPNF 1ytzT 231 :KYEIVTLRNRIDQAQKH Number of specific fragments extracted= 4 number of extra gaps= 0 total=5693 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_577065689.pdb -s /var/tmp/to_scwrl_577065689.seq -o /var/tmp/from_scwrl_577065689.pdb > /var/tmp/scwrl_577065689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577065689.pdb Number of alignments=833 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-global-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t04-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)K7 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 8 :LFSMIADSKDKKEKLIESL 1ytzT 160 :YSSYLAKADQKRGKKQTAR T0287 35 :DEKKKIIDQIK 1ytzT 179 :ETKKKVLAERR T0287 52 :KQM 1ytzT 190 :KPL T0287 56 :TNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLES 1ytzT 193 :NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRK T0287 94 :ETMELLHAIAENPNF 1ytzT 233 :EIVTLRNRIDQAQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5698 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1865079976.pdb -s /var/tmp/to_scwrl_1865079976.seq -o /var/tmp/from_scwrl_1865079976.pdb > /var/tmp/scwrl_1865079976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865079976.pdb Number of alignments=834 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-local-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t04-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 59 :GALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1ytzT 196 :HLNEDKLRDKAKELWDWLYQLQTEKYDFAEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5699 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1845445593.pdb -s /var/tmp/to_scwrl_1845445593.seq -o /var/tmp/from_scwrl_1845445593.pdb > /var/tmp/scwrl_1845445593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845445593.pdb Number of alignments=835 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t04-local-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t04-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 38 :KKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 200 :DKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5700 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_304942110.pdb -s /var/tmp/to_scwrl_304942110.seq -o /var/tmp/from_scwrl_304942110.pdb > /var/tmp/scwrl_304942110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_304942110.pdb Number of alignments=836 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-global-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t2k-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)L22 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESET 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKY T0287 96 :MELLHAIAENPNF 1ytzT 235 :VTLRNRIDQAQKH Number of specific fragments extracted= 2 number of extra gaps= 0 total=5702 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_689196323.pdb -s /var/tmp/to_scwrl_689196323.seq -o /var/tmp/from_scwrl_689196323.pdb > /var/tmp/scwrl_689196323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_689196323.pdb Number of alignments=837 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-global-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t2k-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)L109 because last residue in template chain is (1ytzT)S248 T0287 8 :LFSMIAD 1ytzT 160 :YSSYLAK T0287 24 :ESLQENELLNTDEKKKII 1ytzT 167 :ADQKRGKKQTARETKKKV T0287 48 :HDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESE 1ytzT 185 :LAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKK T0287 95 :TMELLHAIAENPNF 1ytzT 234 :IVTLRNRIDQAQKH Number of specific fragments extracted= 4 number of extra gaps= 0 total=5706 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1544219688.pdb -s /var/tmp/to_scwrl_1544219688.seq -o /var/tmp/from_scwrl_1544219688.pdb > /var/tmp/scwrl_1544219688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1544219688.pdb Number of alignments=838 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-local-adpstyle1.a2m # 1ytzT read from 1ytzT-T0287-t2k-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 65 :LRNYMKDYRAVIKSIGVDKF 1ytzT 202 :LRDKAKELWDWLYQLQTEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5707 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1502172678.pdb -s /var/tmp/to_scwrl_1502172678.seq -o /var/tmp/from_scwrl_1502172678.pdb > /var/tmp/scwrl_1502172678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1502172678.pdb Number of alignments=839 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytzT-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1ytzT-T0287-t2k-local-adpstyle5.a2m # 1ytzT read from 1ytzT-T0287-t2k-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 51 :FKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRL 1ytzT 188 :RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5708 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1873838427.pdb -s /var/tmp/to_scwrl_1873838427.seq -o /var/tmp/from_scwrl_1873838427.pdb > /var/tmp/scwrl_1873838427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1873838427.pdb Number of alignments=840 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-simplesw-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-simplesw-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5709 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_520141229.pdb -s /var/tmp/to_scwrl_520141229.seq -o /var/tmp/from_scwrl_520141229.pdb > /var/tmp/scwrl_520141229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_520141229.pdb Number of alignments=841 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-simplesw-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-simplesw-adpstyle5.a2m # found chain 1ytzT in template set T0287 30 :ELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 1ytzT 192 :LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5710 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1734876021.pdb -s /var/tmp/to_scwrl_1734876021.seq -o /var/tmp/from_scwrl_1734876021.pdb > /var/tmp/scwrl_1734876021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1734876021.pdb Number of alignments=842 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t04-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)Y88 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKE 1ytzT 160 :YSSYLAKADQKRGKKQ T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 183 :KVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDKFKKV 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5713 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2109680956.pdb -s /var/tmp/to_scwrl_2109680956.seq -o /var/tmp/from_scwrl_2109680956.pdb > /var/tmp/scwrl_2109680956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2109680956.pdb Number of alignments=843 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)V178 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIES 1ytzT 160 :YSSYLAKADQKRGKKQTARET T0287 26 :LQENELLNTD 1ytzT 186 :AERRKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDK 1ytzT 230 :KKYEIVTLRNRIDQ T0287 174 :YNDY 1ytzT 244 :AQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5718 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_236008238.pdb -s /var/tmp/to_scwrl_236008238.seq -o /var/tmp/from_scwrl_236008238.pdb > /var/tmp/scwrl_236008238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236008238.pdb Number of alignments=844 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 29 :NELLNTD 1ytzT 189 :RKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :K 1ytzT 230 :K T0287 92 :ESETMELLHAIAENPNF 1ytzT 231 :KYEIVTLRNRIDQAQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5723 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_323529117.pdb -s /var/tmp/to_scwrl_323529117.seq -o /var/tmp/from_scwrl_323529117.pdb > /var/tmp/scwrl_323529117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323529117.pdb Number of alignments=845 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 30 :EL 1ytzT 184 :VL T0287 32 :LNTDEK 1ytzT 197 :LNEDKL T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 203 :RDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPN 1ytzT 230 :KKYEIVTLRNRIDQAQK T0287 125 :F 1ytzT 247 :H Number of specific fragments extracted= 6 number of extra gaps= 0 total=5729 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2017192274.pdb -s /var/tmp/to_scwrl_2017192274.seq -o /var/tmp/from_scwrl_2017192274.pdb > /var/tmp/scwrl_2017192274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2017192274.pdb Number of alignments=846 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t04-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5730 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_944872384.pdb -s /var/tmp/to_scwrl_944872384.seq -o /var/tmp/from_scwrl_944872384.pdb > /var/tmp/scwrl_944872384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944872384.pdb Number of alignments=847 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 186 :AERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5731 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_317304687.pdb -s /var/tmp/to_scwrl_317304687.seq -o /var/tmp/from_scwrl_317304687.pdb > /var/tmp/scwrl_317304687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_317304687.pdb Number of alignments=848 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENE 1ytzT 161 :SSYLAKADQKRGKKQTARETKKKVLAERR T0287 31 :LLNTD 1ytzT 191 :PLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVD 1ytzT 230 :KKYEIVTLRNRID Number of specific fragments extracted= 4 number of extra gaps= 0 total=5735 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2002680537.pdb -s /var/tmp/to_scwrl_2002680537.seq -o /var/tmp/from_scwrl_2002680537.pdb > /var/tmp/scwrl_2002680537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2002680537.pdb Number of alignments=849 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set T0287 7 :KLFSMIADSKDKKEKLIESLQEN 1ytzT 166 :KADQKRGKKQTARETKKKVLAER T0287 32 :LNTDEKK 1ytzT 197 :LNEDKLR T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1ytzT 204 :DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=5738 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_79079303.pdb -s /var/tmp/to_scwrl_79079303.seq -o /var/tmp/from_scwrl_79079303.pdb > /var/tmp/scwrl_79079303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_79079303.pdb Number of alignments=850 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t06-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)Y88 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKE 1ytzT 160 :YSSYLAKADQKRGKKQ T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 183 :KVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDKFKKV 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5741 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_147514529.pdb -s /var/tmp/to_scwrl_147514529.seq -o /var/tmp/from_scwrl_147514529.pdb > /var/tmp/scwrl_147514529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_147514529.pdb Number of alignments=851 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)V178 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIES 1ytzT 160 :YSSYLAKADQKRGKKQTARET T0287 26 :LQENELLNTD 1ytzT 186 :AERRKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDK 1ytzT 230 :KKYEIVTLRNRIDQ T0287 174 :YNDY 1ytzT 244 :AQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5746 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_135816575.pdb -s /var/tmp/to_scwrl_135816575.seq -o /var/tmp/from_scwrl_135816575.pdb > /var/tmp/scwrl_135816575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_135816575.pdb Number of alignments=852 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 29 :NELLNTD 1ytzT 189 :RKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :K 1ytzT 230 :K T0287 92 :ESETMELLHAIAENPNF 1ytzT 231 :KYEIVTLRNRIDQAQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5751 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_152642963.pdb -s /var/tmp/to_scwrl_152642963.seq -o /var/tmp/from_scwrl_152642963.pdb > /var/tmp/scwrl_152642963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152642963.pdb Number of alignments=853 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 30 :EL 1ytzT 184 :VL T0287 32 :LNTDEK 1ytzT 197 :LNEDKL T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 203 :RDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPN 1ytzT 230 :KKYEIVTLRNRIDQAQK T0287 125 :F 1ytzT 247 :H Number of specific fragments extracted= 6 number of extra gaps= 0 total=5757 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_349855533.pdb -s /var/tmp/to_scwrl_349855533.seq -o /var/tmp/from_scwrl_349855533.pdb > /var/tmp/scwrl_349855533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349855533.pdb Number of alignments=854 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t06-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5758 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1994698040.pdb -s /var/tmp/to_scwrl_1994698040.seq -o /var/tmp/from_scwrl_1994698040.pdb > /var/tmp/scwrl_1994698040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994698040.pdb Number of alignments=855 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 186 :AERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5759 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_981579418.pdb -s /var/tmp/to_scwrl_981579418.seq -o /var/tmp/from_scwrl_981579418.pdb > /var/tmp/scwrl_981579418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_981579418.pdb Number of alignments=856 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENE 1ytzT 161 :SSYLAKADQKRGKKQTARETKKKVLAERR T0287 31 :LLNTD 1ytzT 191 :PLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVD 1ytzT 230 :KKYEIVTLRNRID Number of specific fragments extracted= 4 number of extra gaps= 0 total=5763 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_583201672.pdb -s /var/tmp/to_scwrl_583201672.seq -o /var/tmp/from_scwrl_583201672.pdb > /var/tmp/scwrl_583201672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583201672.pdb Number of alignments=857 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set T0287 7 :KLFSMIADSKDKKEKLIESLQEN 1ytzT 166 :KADQKRGKKQTARETKKKVLAER T0287 32 :LNTDEKK 1ytzT 197 :LNEDKLR T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1ytzT 204 :DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=5766 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_208624737.pdb -s /var/tmp/to_scwrl_208624737.seq -o /var/tmp/from_scwrl_208624737.pdb > /var/tmp/scwrl_208624737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_208624737.pdb Number of alignments=858 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t2k-global-adpstyle1.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)Y88 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKE 1ytzT 160 :YSSYLAKADQKRGKKQ T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 183 :KVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDKFKKV 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5769 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2021889244.pdb -s /var/tmp/to_scwrl_2021889244.seq -o /var/tmp/from_scwrl_2021889244.pdb > /var/tmp/scwrl_2021889244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021889244.pdb Number of alignments=859 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-global-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)V178 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIES 1ytzT 160 :YSSYLAKADQKRGKKQTARET T0287 26 :LQENELLNTD 1ytzT 186 :AERRKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIGVDK 1ytzT 230 :KKYEIVTLRNRIDQ T0287 174 :YNDY 1ytzT 244 :AQKH Number of specific fragments extracted= 5 number of extra gaps= 0 total=5774 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_830178792.pdb -s /var/tmp/to_scwrl_830178792.seq -o /var/tmp/from_scwrl_830178792.pdb > /var/tmp/scwrl_830178792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_830178792.pdb Number of alignments=860 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 29 :NELLNTD 1ytzT 189 :RKPLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPNF 1ytzT 230 :KKYEIVTLRNRIDQAQKH Number of specific fragments extracted= 4 number of extra gaps= 0 total=5778 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2136319921.pdb -s /var/tmp/to_scwrl_2136319921.seq -o /var/tmp/from_scwrl_2136319921.pdb > /var/tmp/scwrl_2136319921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2136319921.pdb Number of alignments=861 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 Warning: unaligning (T0287)S126 because last residue in template chain is (1ytzT)S248 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKK T0287 30 :EL 1ytzT 184 :VL T0287 32 :LNTDEK 1ytzT 197 :LNEDKL T0287 41 :IDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 203 :RDKAKELWDWLYQLQTEKYDFAEQIKR T0287 91 :LESETMELLHAIAENPN 1ytzT 230 :KKYEIVTLRNRIDQAQK T0287 125 :F 1ytzT 247 :H Number of specific fragments extracted= 6 number of extra gaps= 0 total=5784 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_452297472.pdb -s /var/tmp/to_scwrl_452297472.seq -o /var/tmp/from_scwrl_452297472.pdb > /var/tmp/scwrl_452297472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_452297472.pdb Number of alignments=862 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-adpstyle1.a2m # 1ytzT read from T0287-1ytzT-t2k-local-adpstyle1.a2m # found chain 1ytzT in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNK 1ytzT 177 :ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5785 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1820040940.pdb -s /var/tmp/to_scwrl_1820040940.seq -o /var/tmp/from_scwrl_1820040940.pdb > /var/tmp/scwrl_1820040940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820040940.pdb Number of alignments=863 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-local-adpstyle5.a2m # found chain 1ytzT in template set T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1ytzT 186 :AERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5786 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_565901963.pdb -s /var/tmp/to_scwrl_565901963.seq -o /var/tmp/from_scwrl_565901963.pdb > /var/tmp/scwrl_565901963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565901963.pdb Number of alignments=864 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1ytzT in template set T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQENE 1ytzT 160 :YSSYLAKADQKRGKKQTARETKKKVLAERR T0287 31 :LLNTD 1ytzT 191 :PLNID T0287 36 :EKKKIIDQIKTMHDFFKQMHTNKGALDKVLRN 1ytzT 198 :NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKR T0287 70 :KDYRAVIKSIG 1ytzT 230 :KKYEIVTLRNR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5790 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_169893801.pdb -s /var/tmp/to_scwrl_169893801.seq -o /var/tmp/from_scwrl_169893801.pdb > /var/tmp/scwrl_169893801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169893801.pdb Number of alignments=865 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ytzT read from T0287-1ytzT-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ytzT in template set T0287 7 :KLFSMIADSKDKKEKLIESLQEN 1ytzT 166 :KADQKRGKKQTARETKKKVLAER T0287 32 :LNTDEKK 1ytzT 197 :LNEDKLR T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIK 1ytzT 204 :DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=5793 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1518002887.pdb -s /var/tmp/to_scwrl_1518002887.seq -o /var/tmp/from_scwrl_1518002887.pdb > /var/tmp/scwrl_1518002887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518002887.pdb Number of alignments=866 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1ytzT-t04-muscle.a2m.gz # 1ytzT read from T0287-1ytzT-t04-muscle.a2m.gz # found chain 1ytzT in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1ytzT)S159 T0287 5 :MRKLFSMIADSKDKKEK 1ytzT 160 :YSSYLAKADQKRGKKQT T0287 33 :NTDEKKKIIDQIKTMHDF 1ytzT 177 :ARETKKKVLAERRKPLNI T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFK 1ytzT 195 :DHLNEDKLRDKAKELWDWLYQLQTEKYD T0287 109 :LFSKFDRS 1ytzT 223 :FAEQIKRK T0287 132 :KMSIREMDSQIE 1ytzT 231 :KYEIVTLRNRID T0287 186 :DLEKY 1ytzT 243 :QAQKH Number of specific fragments extracted= 6 number of extra gaps= 0 total=5799 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_870844074.pdb -s /var/tmp/to_scwrl_870844074.seq -o /var/tmp/from_scwrl_870844074.pdb > /var/tmp/scwrl_870844074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_870844074.pdb Number of alignments=867 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1ytzT-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1ytzT-t2k-muscle.a2m.gz # 1ytzT read from T0287-1ytzT-t2k-muscle.a2m.gz # found chain 1ytzT in template set T0287 1 :M 1ytzT 160 :Y T0287 11 :MIADSKDKKEK 1ytzT 161 :SSYLAKADQKR T0287 28 :ENELLNTDEKKKIIDQIKTMHDF 1ytzT 172 :GKKQTARETKKKVLAERRKPLNI T0287 58 :KGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESE 1ytzT 195 :DHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKK T0287 169 :KTIEQYNDYVRDL 1ytzT 232 :YEIVTLRNRIDQA T0287 196 :VQNA 1ytzT 245 :QKHS Number of specific fragments extracted= 6 number of extra gaps= 0 total=5805 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_859090124.pdb -s /var/tmp/to_scwrl_859090124.seq -o /var/tmp/from_scwrl_859090124.pdb > /var/tmp/scwrl_859090124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_859090124.pdb Number of alignments=868 # command:# Prefix for input files set to 1yz7A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-global-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t04-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 1 :MSNNMRKLFSMIADSKDKK 1yz7A 99 :RAQKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFF 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAF T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 1yz7A 141 :EDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPT T0287 134 :SIREMDSQIELYGT 1yz7A 208 :KEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 5 number of extra gaps= 0 total=5810 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_914738929.pdb -s /var/tmp/to_scwrl_914738929.seq -o /var/tmp/from_scwrl_914738929.pdb > /var/tmp/scwrl_914738929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_914738929.pdb Number of alignments=869 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-global-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t04-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 3 :NNMRKLFSMIADSKDKK 1yz7A 101 :QKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFF 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAF T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 1yz7A 141 :EDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPT T0287 136 :REM 1yz7A 176 :VTI T0287 139 :DSQIELYGTNLP 1yz7A 211 :DVEVKFTYLGAP T0287 154 :LFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 223 :RYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5816 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_225533105.pdb -s /var/tmp/to_scwrl_225533105.seq -o /var/tmp/from_scwrl_225533105.pdb > /var/tmp/scwrl_225533105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225533105.pdb Number of alignments=870 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-local-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t04-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 39 :KIIDQIKTMHDFFKQMHTN 1yz7A 128 :PLEEEWGEVYAAFEDAAKD T0287 58 :KGALDKVLRNYMKDY 1yz7A 148 :IDVLKGHVPDEWLPV Number of specific fragments extracted= 2 number of extra gaps= 0 total=5818 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_585444905.pdb -s /var/tmp/to_scwrl_585444905.seq -o /var/tmp/from_scwrl_585444905.pdb > /var/tmp/scwrl_585444905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_585444905.pdb Number of alignments=871 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t04-local-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t04-local-adpstyle5.a2m # found chain 1yz7A in template set T0287 80 :GVDKFKKV 1yz7A 191 :GVEIIKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5819 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-global-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t2k-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 1 :MSNNMRKLFSMIADSKDKK 1yz7A 99 :RAQKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLK T0287 88 :YRLLESETMELLHAIAENPNFLFSKFDRSI 1yz7A 153 :GHVPDEWLPVLKEIIDNYVEVPTVTIDAEF T0287 118 :LGIFLPFFSKPIMFKMSIREMDSQIELYGT 1yz7A 192 :VEIIKEALIRARDRANKEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 5 number of extra gaps= 0 total=5824 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1434880158.pdb -s /var/tmp/to_scwrl_1434880158.seq -o /var/tmp/from_scwrl_1434880158.pdb > /var/tmp/scwrl_1434880158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1434880158.pdb Number of alignments=872 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-global-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t2k-global-adpstyle5.a2m # found chain 1yz7A in template set T0287 1 :MSNNMRKLFSMIADSKDKK 1yz7A 99 :RAQKAENLLKLAAEKLGKD T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDK 1yz7A 118 :FETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLK T0287 89 :RLLESETMELLHAIAEN 1yz7A 153 :GHVPDEWLPVLKEIIDN T0287 106 :PNFLFSKFDRSI 1yz7A 171 :VEVPTVTIDAEF T0287 118 :LGI 1yz7A 190 :NGV T0287 123 :PFFSKPIMFKMSI 1yz7A 193 :EIIKEALIRARDR T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 165 :YANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 234 :YKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 8 number of extra gaps= 0 total=5832 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1960409126.pdb -s /var/tmp/to_scwrl_1960409126.seq -o /var/tmp/from_scwrl_1960409126.pdb > /var/tmp/scwrl_1960409126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960409126.pdb Number of alignments=873 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-local-adpstyle1.a2m # 1yz7A read from 1yz7A-T0287-t2k-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKV 1yz7A 128 :PLEEEWGEVYAAFEDAAKDGIDVLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=5833 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_547642214.pdb -s /var/tmp/to_scwrl_547642214.seq -o /var/tmp/from_scwrl_547642214.pdb > /var/tmp/scwrl_547642214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547642214.pdb Number of alignments=874 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yz7A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1yz7A-T0287-t2k-local-adpstyle5.a2m # 1yz7A read from 1yz7A-T0287-t2k-local-adpstyle5.a2m # found chain 1yz7A in template set T0287 39 :KIIDQIKTMHDFFKQMHTNKGALDKVLRN 1yz7A 128 :PLEEEWGEVYAAFEDAAKDGIDVLKGHVP T0287 70 :KD 1yz7A 157 :DE T0287 72 :YRAVIK 1yz7A 178 :IDAEFE T0287 78 :SIGVDKFKKVYR 1yz7A 189 :PNGVEIIKEALI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5837 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1670888396.pdb -s /var/tmp/to_scwrl_1670888396.seq -o /var/tmp/from_scwrl_1670888396.pdb > /var/tmp/scwrl_1670888396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1670888396.pdb Number of alignments=875 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-simplesw-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-simplesw-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5838 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_136454596.pdb -s /var/tmp/to_scwrl_136454596.seq -o /var/tmp/from_scwrl_136454596.pdb > /var/tmp/scwrl_136454596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136454596.pdb Number of alignments=876 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-simplesw-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-simplesw-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5838 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t04-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKP 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRAR T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1yz7A 204 :DRANKEKDVEVKFTYLGAPRYRIDITAPD T0287 164 :FYANLKTIEQYNDYVRDLLMK 1yz7A 233 :YYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5842 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_417350841.pdb -s /var/tmp/to_scwrl_417350841.seq -o /var/tmp/from_scwrl_417350841.pdb > /var/tmp/scwrl_417350841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_417350841.pdb Number of alignments=877 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 5 :M 1yz7A 92 :A T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 93 :KLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTID T0287 106 :PNFLFSKFDRSILGIFLPFFSK 1yz7A 180 :AEFEITVPKPNGVEIIKEALIR T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFVMTD 1yz7A 202 :ARDRANKEKDVEVKFTYLGAPRYRIDITAP T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1yz7A 232 :DYYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5848 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_468277133.pdb -s /var/tmp/to_scwrl_468277133.seq -o /var/tmp/from_scwrl_468277133.pdb > /var/tmp/scwrl_468277133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_468277133.pdb Number of alignments=878 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKL 1yz7A 92 :AKLQ T0287 12 :IADSKDKKEKLIESLQE 1yz7A 96 :EFKRAQKAENLLKLAAE T0287 31 :LLNTDEKK 1yz7A 113 :KLGKDFET T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 121 :AWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEV 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYY T0287 166 :ANLKTIEQYNDY 1yz7A 235 :KAEEVLESIAEE T0287 187 :LEKYMKEKGVQ 1yz7A 247 :ILRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5857 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_453759283.pdb -s /var/tmp/to_scwrl_453759283.seq -o /var/tmp/from_scwrl_453759283.pdb > /var/tmp/scwrl_453759283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_453759283.pdb Number of alignments=879 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1yz7A 97 :FKRAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5866 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_272547731.pdb -s /var/tmp/to_scwrl_272547731.seq -o /var/tmp/from_scwrl_272547731.pdb > /var/tmp/scwrl_272547731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_272547731.pdb Number of alignments=880 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t04-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5867 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_547356437.pdb -s /var/tmp/to_scwrl_547356437.seq -o /var/tmp/from_scwrl_547356437.pdb > /var/tmp/scwrl_547356437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547356437.pdb Number of alignments=881 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-local-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5867 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set T0287 13 :ADSKDKKEKLIESLQ 1yz7A 97 :FKRAQKAENLLKLAA T0287 30 :ELLNTDEK 1yz7A 112 :EKLGKDFE T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 120 :TAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVN 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYK T0287 167 :NLKTIEQYND 1yz7A 236 :AEEVLESIAE T0287 180 :D 1yz7A 246 :E T0287 187 :LEKYMKEKGV 1yz7A 247 :ILRVIKEAGG Number of specific fragments extracted= 9 number of extra gaps= 0 total=5876 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_601273812.pdb -s /var/tmp/to_scwrl_601273812.seq -o /var/tmp/from_scwrl_601273812.pdb > /var/tmp/scwrl_601273812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_601273812.pdb Number of alignments=882 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKK 1yz7A 99 :RAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5884 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_408364306.pdb -s /var/tmp/to_scwrl_408364306.seq -o /var/tmp/from_scwrl_408364306.pdb > /var/tmp/scwrl_408364306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408364306.pdb Number of alignments=883 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t06-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKP 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRAR T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1yz7A 204 :DRANKEKDVEVKFTYLGAPRYRIDITAPD T0287 164 :FYANLKTIEQYNDYVRDLLMK 1yz7A 233 :YYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5888 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_699999400.pdb -s /var/tmp/to_scwrl_699999400.seq -o /var/tmp/from_scwrl_699999400.pdb > /var/tmp/scwrl_699999400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_699999400.pdb Number of alignments=884 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 5 :M 1yz7A 92 :A T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 93 :KLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTID T0287 106 :PNFLFSKFDRSILGIFLPFFSK 1yz7A 180 :AEFEITVPKPNGVEIIKEALIR T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFVMTD 1yz7A 202 :ARDRANKEKDVEVKFTYLGAPRYRIDITAP T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1yz7A 232 :DYYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5894 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_951129346.pdb -s /var/tmp/to_scwrl_951129346.seq -o /var/tmp/from_scwrl_951129346.pdb > /var/tmp/scwrl_951129346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_951129346.pdb Number of alignments=885 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKL 1yz7A 92 :AKLQ T0287 12 :IADSKDKKEKLIESLQE 1yz7A 96 :EFKRAQKAENLLKLAAE T0287 31 :LLNTDEKK 1yz7A 113 :KLGKDFET T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 121 :AWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEV 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYY T0287 166 :ANLKTIEQYNDY 1yz7A 235 :KAEEVLESIAEE T0287 187 :LEKYMKEKGVQ 1yz7A 247 :ILRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5903 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_255578700.pdb -s /var/tmp/to_scwrl_255578700.seq -o /var/tmp/from_scwrl_255578700.pdb > /var/tmp/scwrl_255578700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_255578700.pdb Number of alignments=886 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1yz7A 97 :FKRAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5912 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1681578817.pdb -s /var/tmp/to_scwrl_1681578817.seq -o /var/tmp/from_scwrl_1681578817.pdb > /var/tmp/scwrl_1681578817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681578817.pdb Number of alignments=887 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t06-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5913 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1534331017.pdb -s /var/tmp/to_scwrl_1534331017.seq -o /var/tmp/from_scwrl_1534331017.pdb > /var/tmp/scwrl_1534331017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1534331017.pdb Number of alignments=888 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-local-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5913 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set T0287 13 :ADSKDKKEKLIESLQ 1yz7A 97 :FKRAQKAENLLKLAA T0287 30 :ELLNTDEK 1yz7A 112 :EKLGKDFE T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 120 :TAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVN 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYK T0287 167 :NLKTIEQYND 1yz7A 236 :AEEVLESIAE T0287 180 :D 1yz7A 246 :E T0287 187 :LEKYMKEKGV 1yz7A 247 :ILRVIKEAGG Number of specific fragments extracted= 9 number of extra gaps= 0 total=5922 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_464203437.pdb -s /var/tmp/to_scwrl_464203437.seq -o /var/tmp/from_scwrl_464203437.pdb > /var/tmp/scwrl_464203437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464203437.pdb Number of alignments=889 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKK 1yz7A 99 :RAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5930 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1555984414.pdb -s /var/tmp/to_scwrl_1555984414.seq -o /var/tmp/from_scwrl_1555984414.pdb > /var/tmp/scwrl_1555984414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1555984414.pdb Number of alignments=890 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t2k-global-adpstyle1.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKP 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRAR T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVMTDE 1yz7A 204 :DRANKEKDVEVKFTYLGAPRYRIDITAPD T0287 164 :FYANLKTIEQYNDYVRDLLMK 1yz7A 233 :YYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5934 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_217026162.pdb -s /var/tmp/to_scwrl_217026162.seq -o /var/tmp/from_scwrl_217026162.pdb > /var/tmp/scwrl_217026162.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_217026162.pdb Number of alignments=891 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-global-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Y190 because last residue in template chain is (1yz7A)R266 T0287 5 :M 1yz7A 92 :A T0287 18 :KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 93 :KLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTID T0287 106 :PNFLFSKFDRSILGIFLPFFSK 1yz7A 180 :AEFEITVPKPNGVEIIKEALIR T0287 130 :MFKMSIREMDSQIELYGTNLPLLKLFVMTD 1yz7A 202 :ARDRANKEKDVEVKFTYLGAPRYRIDITAP T0287 163 :NFYANLKTIEQYNDYVRDLLMK 1yz7A 232 :DYYKAEEVLESIAEEILRVIKE T0287 185 :FDLEK 1yz7A 261 :LRKEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=5940 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_453039711.pdb -s /var/tmp/to_scwrl_453039711.seq -o /var/tmp/from_scwrl_453039711.pdb > /var/tmp/scwrl_453039711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_453039711.pdb Number of alignments=892 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQE 1yz7A 97 :FKRAQKAENLLKLAAE T0287 31 :LLNTDEKK 1yz7A 113 :KLGKDFET T0287 46 :TMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 121 :AWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVNF 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYKA T0287 168 :LKTIEQYNDY 1yz7A 237 :EEVLESIAEE T0287 187 :LEKYMKEKGVQ 1yz7A 247 :ILRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5949 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2008281886.pdb -s /var/tmp/to_scwrl_2008281886.seq -o /var/tmp/from_scwrl_2008281886.pdb > /var/tmp/scwrl_2008281886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2008281886.pdb Number of alignments=893 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set Warning: unaligning (T0287)N4 because first residue in template chain is (1yz7A)K91 T0287 5 :MRKLF 1yz7A 92 :AKLQE T0287 13 :ADSKDKKEKLIESLQENELLNTDEKK 1yz7A 97 :FKRAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5958 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2037067103.pdb -s /var/tmp/to_scwrl_2037067103.seq -o /var/tmp/from_scwrl_2037067103.pdb > /var/tmp/scwrl_2037067103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2037067103.pdb Number of alignments=894 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-adpstyle1.a2m # 1yz7A read from T0287-1yz7A-t2k-local-adpstyle1.a2m # found chain 1yz7A in template set T0287 78 :SIGVDKFKKVYRLLESETMELLHAIAE 1yz7A 227 :DITAPDYYKAEEVLESIAEEILRVIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5959 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1018941674.pdb -s /var/tmp/to_scwrl_1018941674.seq -o /var/tmp/from_scwrl_1018941674.pdb > /var/tmp/scwrl_1018941674.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1018941674.pdb Number of alignments=895 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-local-adpstyle5.a2m # found chain 1yz7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5959 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 1yz7A in template set T0287 9 :FSMIADSKDKKEKLIESLQE 1yz7A 93 :KLQEFKRAQKAENLLKLAAE T0287 31 :LLNTDEK 1yz7A 113 :KLGKDFE T0287 45 :KTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG 1yz7A 120 :TAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHV T0287 92 :ESETMELLHAIAENPN 1yz7A 156 :PDEWLPVLKEIIDNYV T0287 121 :FLPFFSKPIMFKMSI 1yz7A 172 :EVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEEVNFY 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDYYKAE T0287 169 :KTIEQYND 1yz7A 238 :EVLESIAE T0287 180 :D 1yz7A 246 :E T0287 187 :LEKYMKEKGV 1yz7A 247 :ILRVIKEAGG Number of specific fragments extracted= 9 number of extra gaps= 0 total=5968 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_30692040.pdb -s /var/tmp/to_scwrl_30692040.seq -o /var/tmp/from_scwrl_30692040.pdb > /var/tmp/scwrl_30692040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30692040.pdb Number of alignments=896 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yz7A read from T0287-1yz7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yz7A in template set T0287 15 :SKDKKEKLIESLQENELLNTDEKK 1yz7A 99 :RAQKAENLLKLAAEKLGKDFETAW T0287 48 :HDFFKQMHTNKGALDKVLRNYMKD 1yz7A 123 :REVWVPLEEEWGEVYAAFEDAAKD T0287 80 :GVDKFKK 1yz7A 147 :GIDVLKG T0287 90 :LLESETMELLHAIAENP 1yz7A 154 :HVPDEWLPVLKEIIDNY T0287 120 :IFLPFFSKPIMFKMSI 1yz7A 171 :VEVPTVTIDAEFEITV T0287 136 :REMDSQIELYGTNLPLLKLFVMTDEE 1yz7A 208 :KEKDVEVKFTYLGAPRYRIDITAPDY T0287 169 :KTIEQYNDYVRDLL 1yz7A 234 :YKAEEVLESIAEEI T0287 188 :EKYMKEKGVQ 1yz7A 248 :LRVIKEAGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5976 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1407586343.pdb -s /var/tmp/to_scwrl_1407586343.seq -o /var/tmp/from_scwrl_1407586343.pdb > /var/tmp/scwrl_1407586343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407586343.pdb Number of alignments=897 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1yz7A-t04-muscle.a2m.gz # 1yz7A read from T0287-1yz7A-t04-muscle.a2m.gz # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETME 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVE T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGT 1yz7A 173 :VPTVTIDAEFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5979 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1889785747.pdb -s /var/tmp/to_scwrl_1889785747.seq -o /var/tmp/from_scwrl_1889785747.pdb > /var/tmp/scwrl_1889785747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1889785747.pdb Number of alignments=898 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-1yz7A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-1yz7A-t2k-muscle.a2m.gz # 1yz7A read from T0287-1yz7A-t2k-muscle.a2m.gz # found chain 1yz7A in template set Warning: unaligning (T0287)K16 because first residue in template chain is (1yz7A)K91 Warning: unaligning (T0287)Q197 because last residue in template chain is (1yz7A)R266 T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETME 1yz7A 92 :AKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVE T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGT 1yz7A 173 :VPTVTIDAEFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGA T0287 153 :KLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 1yz7A 222 :PRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5982 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_889782164.pdb -s /var/tmp/to_scwrl_889782164.seq -o /var/tmp/from_scwrl_889782164.pdb > /var/tmp/scwrl_889782164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_889782164.pdb Number of alignments=899 # command:# Prefix for input files set to 2ahjA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)N4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 5 :MR 2ahjA 14 :AQ T0287 13 :ADSKDKKEKLIESLQENELLNTD 2ahjA 16 :APVSDRAWALFRALDGKGLVPDG T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 39 :YVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFV 2ahjA 156 :EIRV T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 161 :DTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 10 number of extra gaps= 3 total=5992 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_174841625.pdb -s /var/tmp/to_scwrl_174841625.seq -o /var/tmp/from_scwrl_174841625.pdb > /var/tmp/scwrl_174841625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_174841625.pdb Number of alignments=900 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFS 2ahjA 119 :ILGLPPTWYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=5994 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-global-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t04-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWT T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVM 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 3 total=6001 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2115318852.pdb -s /var/tmp/to_scwrl_2115318852.seq -o /var/tmp/from_scwrl_2115318852.pdb > /var/tmp/scwrl_2115318852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2115318852.pdb Number of alignments=901 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-global-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t04-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAE T0287 56 :TNKGALD 2ahjA 60 :VARAWTD T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVM 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 6 number of extra gaps= 2 total=6007 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1475227068.pdb -s /var/tmp/to_scwrl_1475227068.seq -o /var/tmp/from_scwrl_1475227068.pdb > /var/tmp/scwrl_1475227068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475227068.pdb Number of alignments=902 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-local-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t04-local-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=6009 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t04-local-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t04-local-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 69 :FRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=6012 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1609721783.pdb -s /var/tmp/to_scwrl_1609721783.seq -o /var/tmp/from_scwrl_1609721783.pdb > /var/tmp/scwrl_1609721783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1609721783.pdb Number of alignments=903 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-global-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t2k-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 165 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 6 number of extra gaps= 2 total=6018 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1928244331.pdb -s /var/tmp/to_scwrl_1928244331.seq -o /var/tmp/from_scwrl_1928244331.pdb > /var/tmp/scwrl_1928244331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928244331.pdb Number of alignments=904 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-global-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t2k-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQM 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGA T0287 55 :HTNKGALDKVLR 2ahjA 59 :LVARAWTDPEFR T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 72 :LLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASD T0287 153 :KLFVMTDEEVNFYANL 2ahjA 156 :EIRVYDTTAETRYMVL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 173 :QRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 2 total=6026 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2022869283.pdb -s /var/tmp/to_scwrl_2022869283.seq -o /var/tmp/from_scwrl_2022869283.pdb > /var/tmp/scwrl_2022869283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022869283.pdb Number of alignments=905 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-local-adpstyle1.a2m # 2ahjA read from 2ahjA-T0287-t2k-local-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLP 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 4 number of extra gaps= 2 total=6030 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1133126533.pdb -s /var/tmp/to_scwrl_1133126533.seq -o /var/tmp/from_scwrl_1133126533.pdb > /var/tmp/scwrl_1133126533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1133126533.pdb Number of alignments=906 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-t2k-local-adpstyle5.a2m # 2ahjA read from 2ahjA-T0287-t2k-local-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 66 :RNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 71 :QLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS Number of specific fragments extracted= 4 number of extra gaps= 2 total=6034 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2064698928.pdb -s /var/tmp/to_scwrl_2064698928.seq -o /var/tmp/from_scwrl_2064698928.pdb > /var/tmp/scwrl_2064698928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064698928.pdb Number of alignments=907 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-simplesw-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-simplesw-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6035 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-simplesw-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-simplesw-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6035 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t04-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNT 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=6043 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_292736477.pdb -s /var/tmp/to_scwrl_292736477.seq -o /var/tmp/from_scwrl_292736477.pdb > /var/tmp/scwrl_292736477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_292736477.pdb Number of alignments=908 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjA 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjA 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjA 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=6053 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1601403666.pdb -s /var/tmp/to_scwrl_1601403666.seq -o /var/tmp/from_scwrl_1601403666.pdb > /var/tmp/scwrl_1601403666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1601403666.pdb Number of alignments=909 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 13 number of extra gaps= 3 total=6066 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_370974564.pdb -s /var/tmp/to_scwrl_370974564.seq -o /var/tmp/from_scwrl_370974564.pdb > /var/tmp/scwrl_370974564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_370974564.pdb Number of alignments=910 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)K83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 84 :F 2ahjA 116 :A T0287 87 :VYRLLES 2ahjA 119 :ILGLPPT T0287 94 :ETMELLHAIAENPNFLFSKF 2ahjA 128 :KSFEYRARVVREPRKVLSEM T0287 195 :GVQNA 2ahjA 148 :GTEIA Number of specific fragments extracted= 8 number of extra gaps= 2 total=6074 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_565284209.pdb -s /var/tmp/to_scwrl_565284209.seq -o /var/tmp/from_scwrl_565284209.pdb > /var/tmp/scwrl_565284209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565284209.pdb Number of alignments=911 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t04-local-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6075 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-local-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6075 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 2 total=6087 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1276456.pdb -s /var/tmp/to_scwrl_1276456.seq -o /var/tmp/from_scwrl_1276456.pdb > /var/tmp/scwrl_1276456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276456.pdb Number of alignments=912 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 109 :LFSKF 2ahjA 87 :LGPQG T0287 140 :SQIELYGTNLPLLKLF 2ahjA 92 :EYIVAVEDTPTLKNVI T0287 158 :T 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NLKTI 2ahjA 119 :ILGLP T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 125 :TWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 2 total=6096 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_972248377.pdb -s /var/tmp/to_scwrl_972248377.seq -o /var/tmp/from_scwrl_972248377.pdb > /var/tmp/scwrl_972248377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972248377.pdb Number of alignments=913 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t06-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNT 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=6104 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_973648515.pdb -s /var/tmp/to_scwrl_973648515.seq -o /var/tmp/from_scwrl_973648515.pdb > /var/tmp/scwrl_973648515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973648515.pdb Number of alignments=914 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjA 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjA 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjA 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=6114 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_701275856.pdb -s /var/tmp/to_scwrl_701275856.seq -o /var/tmp/from_scwrl_701275856.pdb > /var/tmp/scwrl_701275856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_701275856.pdb Number of alignments=915 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 13 number of extra gaps= 3 total=6127 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1923377722.pdb -s /var/tmp/to_scwrl_1923377722.seq -o /var/tmp/from_scwrl_1923377722.pdb > /var/tmp/scwrl_1923377722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923377722.pdb Number of alignments=916 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)K83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 84 :F 2ahjA 116 :A T0287 87 :VYRLLES 2ahjA 119 :ILGLPPT T0287 94 :ETMELLHAIAENPNFLFSKF 2ahjA 128 :KSFEYRARVVREPRKVLSEM T0287 195 :GVQNA 2ahjA 148 :GTEIA Number of specific fragments extracted= 8 number of extra gaps= 2 total=6135 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1229227214.pdb -s /var/tmp/to_scwrl_1229227214.seq -o /var/tmp/from_scwrl_1229227214.pdb > /var/tmp/scwrl_1229227214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1229227214.pdb Number of alignments=917 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t06-local-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6136 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-local-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6136 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjA 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2ahjA 67 :PEFRQ T0287 90 :LLESET 2ahjA 72 :LLLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjA 78 :TAAVAQYGYLGPQGEY T0287 117 :I 2ahjA 94 :I T0287 129 :IMFK 2ahjA 95 :VAVE T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 2 total=6148 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_235371026.pdb -s /var/tmp/to_scwrl_235371026.seq -o /var/tmp/from_scwrl_235371026.pdb > /var/tmp/scwrl_235371026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_235371026.pdb Number of alignments=918 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 109 :LFSKF 2ahjA 87 :LGPQG T0287 140 :SQIELYGTNLPLLKLF 2ahjA 92 :EYIVAVEDTPTLKNVI T0287 158 :T 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NLKTI 2ahjA 119 :ILGLP T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 125 :TWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 2 total=6157 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1310225092.pdb -s /var/tmp/to_scwrl_1310225092.seq -o /var/tmp/from_scwrl_1310225092.pdb > /var/tmp/scwrl_1310225092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1310225092.pdb Number of alignments=919 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t2k-global-adpstyle1.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNT 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjA 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=6165 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1693430651.pdb -s /var/tmp/to_scwrl_1693430651.seq -o /var/tmp/from_scwrl_1693430651.pdb > /var/tmp/scwrl_1693430651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1693430651.pdb Number of alignments=920 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-global-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjA)V203 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEK 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjA 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPL 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjA 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjA 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjA 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=6175 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1791355440.pdb -s /var/tmp/to_scwrl_1791355440.seq -o /var/tmp/from_scwrl_1791355440.pdb > /var/tmp/scwrl_1791355440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1791355440.pdb Number of alignments=921 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2ahjA 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2ahjA 73 :LLTDGTAAVAQYGY T0287 109 :LFSKFD 2ahjA 87 :LGPQGE T0287 128 :PIMFK 2ahjA 93 :YIVAV T0287 146 :G 2ahjA 98 :E T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6187 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1527251255.pdb -s /var/tmp/to_scwrl_1527251255.seq -o /var/tmp/from_scwrl_1527251255.pdb > /var/tmp/scwrl_1527251255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527251255.pdb Number of alignments=922 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)K83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :M 2ahjA 4 :I T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 84 :F 2ahjA 116 :A T0287 87 :VYRLLES 2ahjA 119 :ILGLPPT T0287 94 :ETMELLHAIAENPNFLFSKF 2ahjA 128 :KSFEYRARVVREPRKVLSEM T0287 195 :GVQNA 2ahjA 148 :GTEIA Number of specific fragments extracted= 8 number of extra gaps= 2 total=6195 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2146470362.pdb -s /var/tmp/to_scwrl_2146470362.seq -o /var/tmp/from_scwrl_2146470362.pdb > /var/tmp/scwrl_2146470362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2146470362.pdb Number of alignments=923 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-adpstyle1.a2m # 2ahjA read from T0287-2ahjA-t2k-local-adpstyle1.a2m # found chain 2ahjA in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjA 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6196 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-local-adpstyle5.a2m # found chain 2ahjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6196 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 15 :QAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2ahjA 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIG 2ahjA 73 :LLTDGTAAVAQYG T0287 108 :FLFSKFD 2ahjA 86 :YLGPQGE T0287 128 :PIMFK 2ahjA 93 :YIVAV T0287 146 :G 2ahjA 98 :E T0287 148 :NLPLLKLFV 2ahjA 99 :DTPTLKNVI T0287 159 :D 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NL 2ahjA 119 :IL T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 122 :LPPTWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=6207 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1652153679.pdb -s /var/tmp/to_scwrl_1652153679.seq -o /var/tmp/from_scwrl_1652153679.pdb > /var/tmp/scwrl_1652153679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1652153679.pdb Number of alignments=924 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjA read from T0287-2ahjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjA in template set Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)D159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjA 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjA 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjA 74 :LTDGTAAVAQYGY T0287 109 :LFSKF 2ahjA 87 :LGPQG T0287 140 :SQIELYGTNLPLLKLF 2ahjA 92 :EYIVAVEDTPTLKNVI T0287 158 :T 2ahjA 110 :S T0287 164 :F 2ahjA 116 :A T0287 167 :NLKTI 2ahjA 119 :ILGLP T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 125 :TWYKSFEYRARVVREPRKVLSEMGTEIA Number of specific fragments extracted= 9 number of extra gaps= 2 total=6216 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1416834711.pdb -s /var/tmp/to_scwrl_1416834711.seq -o /var/tmp/from_scwrl_1416834711.pdb > /var/tmp/scwrl_1416834711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416834711.pdb Number of alignments=925 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2ahjA-t04-muscle.a2m.gz # 2ahjA read from T0287-2ahjA-t04-muscle.a2m.gz # found chain 2ahjA in template set Warning: unaligning (T0287)K7 because first residue in template chain is (2ahjA)I4 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)H6 Warning: unaligning (T0287)F9 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)H6 Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)P13 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 11 :MIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2ahjA 14 :AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVM 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 6 number of extra gaps= 2 total=6222 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1017928390.pdb -s /var/tmp/to_scwrl_1017928390.seq -o /var/tmp/from_scwrl_1017928390.pdb > /var/tmp/scwrl_1017928390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017928390.pdb Number of alignments=926 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2ahjA-t2k-muscle.a2m.gz # 2ahjA read from T0287-2ahjA-t2k-muscle.a2m.gz # found chain 2ahjA in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjA)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjA)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjA)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2ahjA)P118 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQE 2ahjA 18 :VSDRAWALFRALDGKGLVPDGYVEGWKK T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQM 2ahjA 48 :EEDFSPRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjA 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjA 110 :S T0287 114 :D 2ahjA 116 :A T0287 117 :ILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2ahjA 119 :ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjA 165 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 2 total=6229 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1682845719.pdb -s /var/tmp/to_scwrl_1682845719.seq -o /var/tmp/from_scwrl_1682845719.pdb > /var/tmp/scwrl_1682845719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682845719.pdb Number of alignments=927 # command:# Prefix for input files set to 2ahjC/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # 2ahjC read from 2ahjA-T0287-fssp-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 1 :M 2ahjC 4 :I T0287 4 :NMR 2ahjC 13 :PAQ T0287 13 :ADSKDKKEKLIESLQENELLNTD 2ahjC 16 :APVSDRAWALFRALDGKGLVPDG T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 39 :YVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLL 2ahjC 136 :VVREPRKVLSEMGTEIASD T0287 153 :KLFV 2ahjC 156 :EIRV T0287 157 :MTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 161 :DTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 10 number of extra gaps= 3 total=6239 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_676937408.pdb -s /var/tmp/to_scwrl_676937408.seq -o /var/tmp/from_scwrl_676937408.pdb > /var/tmp/scwrl_676937408.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_676937408.pdb Number of alignments=928 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjA-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # 2ahjC read from 2ahjA-T0287-fssp-local-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 T0287 114 :DRSILGIFLPFFS 2ahjC 116 :AWPILGLPPTWYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=6240 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-global-adpstyle1.a2m # 2ahjC read from 2ahjC-T0287-t2k-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIID 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKK T0287 43 :QIKTMHDFFKQMHTNKGALDKVLRNYM 2ahjC 47 :FEEDFSPRRGAELVARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 75 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDE 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 165 :ETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 7 number of extra gaps= 2 total=6247 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_760230490.pdb -s /var/tmp/to_scwrl_760230490.seq -o /var/tmp/from_scwrl_760230490.pdb > /var/tmp/scwrl_760230490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_760230490.pdb Number of alignments=929 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-global-adpstyle5.a2m # 2ahjC read from 2ahjC-T0287-t2k-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQ 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRG T0287 54 :MHTNKGALDKVLR 2ahjC 58 :ELVARAWTDPEFR T0287 67 :NYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 72 :LLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDEEVNFYANLKTI 2ahjC 155 :IEIRVYDTTAETRYMVLPQR T0287 172 :EQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 176 :AGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 2 total=6255 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_425144237.pdb -s /var/tmp/to_scwrl_425144237.seq -o /var/tmp/from_scwrl_425144237.pdb > /var/tmp/scwrl_425144237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_425144237.pdb Number of alignments=930 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-local-adpstyle1.a2m # 2ahjC read from 2ahjC-T0287-t2k-local-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLP 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 4 number of extra gaps= 2 total=6259 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_851779033.pdb -s /var/tmp/to_scwrl_851779033.seq -o /var/tmp/from_scwrl_851779033.pdb > /var/tmp/scwrl_851779033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_851779033.pdb Number of alignments=931 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahjC-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2ahjC-T0287-t2k-local-adpstyle5.a2m # 2ahjC read from 2ahjC-T0287-t2k-local-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 65 :LRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 70 :RQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS Number of specific fragments extracted= 4 number of extra gaps= 2 total=6263 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_728065696.pdb -s /var/tmp/to_scwrl_728065696.seq -o /var/tmp/from_scwrl_728065696.pdb > /var/tmp/scwrl_728065696.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_728065696.pdb Number of alignments=932 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-simplesw-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-simplesw-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6264 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-simplesw-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-simplesw-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6264 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t04-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=6272 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1900371305.pdb -s /var/tmp/to_scwrl_1900371305.seq -o /var/tmp/from_scwrl_1900371305.pdb > /var/tmp/scwrl_1900371305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1900371305.pdb Number of alignments=933 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjC 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjC 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjC 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=6282 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_314017170.pdb -s /var/tmp/to_scwrl_314017170.seq -o /var/tmp/from_scwrl_314017170.pdb > /var/tmp/scwrl_314017170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_314017170.pdb Number of alignments=934 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKI 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2ahjC 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6294 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_508826380.pdb -s /var/tmp/to_scwrl_508826380.seq -o /var/tmp/from_scwrl_508826380.pdb > /var/tmp/scwrl_508826380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508826380.pdb Number of alignments=935 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjC 74 :LTDGTAAVAQYGY T0287 84 :FKKVYRLLES 2ahjC 116 :AWPILGLPPT T0287 94 :ETMELL 2ahjC 128 :KSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVM 2ahjC 152 :ASDIEIRVYDTTAETRYMVLP T0287 158 :TDEEVNFY 2ahjC 174 :RPAGTEGW T0287 170 :TIEQYNDYV 2ahjC 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2ahjC 192 :KDCLIGVAI T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 11 number of extra gaps= 2 total=6305 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1775756941.pdb -s /var/tmp/to_scwrl_1775756941.seq -o /var/tmp/from_scwrl_1775756941.pdb > /var/tmp/scwrl_1775756941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775756941.pdb Number of alignments=936 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t04-local-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6306 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-local-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6306 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjC 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=6317 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1447143703.pdb -s /var/tmp/to_scwrl_1447143703.seq -o /var/tmp/from_scwrl_1447143703.pdb > /var/tmp/scwrl_1447143703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1447143703.pdb Number of alignments=937 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDK 2ahjC 74 :LTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2ahjC 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2ahjC 110 :S T0287 164 :FYANLKTI 2ahjC 116 :AWPILGLP T0287 172 :EQYN 2ahjC 125 :TWYK T0287 176 :DY 2ahjC 131 :EY T0287 179 :R 2ahjC 133 :R T0287 182 :LMK 2ahjC 136 :VVR T0287 186 :DLEKYMKEKGVQNA 2ahjC 139 :EPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=6328 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_426041661.pdb -s /var/tmp/to_scwrl_426041661.seq -o /var/tmp/from_scwrl_426041661.pdb > /var/tmp/scwrl_426041661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_426041661.pdb Number of alignments=938 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t06-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=6336 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2068493419.pdb -s /var/tmp/to_scwrl_2068493419.seq -o /var/tmp/from_scwrl_2068493419.pdb > /var/tmp/scwrl_2068493419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2068493419.pdb Number of alignments=939 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjC 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjC 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjC 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=6346 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_901063723.pdb -s /var/tmp/to_scwrl_901063723.seq -o /var/tmp/from_scwrl_901063723.pdb > /var/tmp/scwrl_901063723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901063723.pdb Number of alignments=940 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKI 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2ahjC 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6358 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_797016226.pdb -s /var/tmp/to_scwrl_797016226.seq -o /var/tmp/from_scwrl_797016226.pdb > /var/tmp/scwrl_797016226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797016226.pdb Number of alignments=941 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjC 74 :LTDGTAAVAQYGY T0287 84 :FKKVYRLLES 2ahjC 116 :AWPILGLPPT T0287 94 :ETMELL 2ahjC 128 :KSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVM 2ahjC 152 :ASDIEIRVYDTTAETRYMVLP T0287 158 :TDEEVNFY 2ahjC 174 :RPAGTEGW T0287 170 :TIEQYNDYV 2ahjC 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2ahjC 192 :KDCLIGVAI T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 11 number of extra gaps= 2 total=6369 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_486293981.pdb -s /var/tmp/to_scwrl_486293981.seq -o /var/tmp/from_scwrl_486293981.pdb > /var/tmp/scwrl_486293981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_486293981.pdb Number of alignments=942 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t06-local-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6370 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-local-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6370 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2ahjC 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRAV 2ahjC 67 :PEFRQL T0287 91 :LESET 2ahjC 73 :LLTDG T0287 100 :HAIAENPNFLFSKFDR 2ahjC 78 :TAAVAQYGYLGPQGEY T0287 128 :PIMFK 2ahjC 94 :IVAVE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 164 :FYANL 2ahjC 119 :ILGLP T0287 171 :IEQYNDYVRD 2ahjC 124 :PTWYKSFEYR T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=6381 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_902340180.pdb -s /var/tmp/to_scwrl_902340180.seq -o /var/tmp/from_scwrl_902340180.pdb > /var/tmp/scwrl_902340180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902340180.pdb Number of alignments=943 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDK 2ahjC 74 :LTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2ahjC 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2ahjC 110 :S T0287 164 :FYANLKTI 2ahjC 116 :AWPILGLP T0287 172 :EQYN 2ahjC 125 :TWYK T0287 176 :DY 2ahjC 131 :EY T0287 179 :R 2ahjC 133 :R T0287 182 :LMK 2ahjC 136 :VVR T0287 186 :DLEKYMKEKGVQNA 2ahjC 139 :EPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=6392 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1769264602.pdb -s /var/tmp/to_scwrl_1769264602.seq -o /var/tmp/from_scwrl_1769264602.pdb > /var/tmp/scwrl_1769264602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1769264602.pdb Number of alignments=944 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t2k-global-adpstyle1.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2ahjC 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDEEVN 2ahjC 136 :VVREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=6400 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1459942495.pdb -s /var/tmp/to_scwrl_1459942495.seq -o /var/tmp/from_scwrl_1459942495.pdb > /var/tmp/scwrl_1459942495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1459942495.pdb Number of alignments=945 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-global-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2ahjC 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2ahjC 157 :IRVYDTTAE T0287 162 :VNFYANLK 2ahjC 166 :TRYMVLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKG 2ahjC 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=6410 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1603616035.pdb -s /var/tmp/to_scwrl_1603616035.seq -o /var/tmp/from_scwrl_1603616035.pdb > /var/tmp/scwrl_1603616035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603616035.pdb Number of alignments=946 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 1 :M 2ahjC 4 :I T0287 10 :SMIADSKDKKEKLIESLQENELLNT 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPD T0287 35 :DEKKKIIDQ 2ahjC 41 :EGWKKTFEE T0287 44 :IKTMHDFFKQMHTNKGALDK 2ahjC 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2ahjC 73 :LLTDGTAAVAQYGY T0287 88 :YRLL 2ahjC 117 :WPIL T0287 92 :ESETMELL 2ahjC 126 :WYKSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVMTDEEVNF 2ahjC 152 :ASDIEIRVYDTTAETRYMVLPQRPAGTE T0287 168 :LKTIEQYNDYV 2ahjC 180 :GWSQEQLQEIV T0287 179 :RDLLMKFDLE 2ahjC 192 :KDCLIGVAIP T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 12 number of extra gaps= 2 total=6422 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1545158677.pdb -s /var/tmp/to_scwrl_1545158677.seq -o /var/tmp/from_scwrl_1545158677.pdb > /var/tmp/scwrl_1545158677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1545158677.pdb Number of alignments=947 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)N3 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 Warning: unaligning (T0287)V196 because last residue in template chain is (2ahjC)V203 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGV 2ahjC 74 :LTDGTAAVAQYGY T0287 84 :FKKVYRLLES 2ahjC 116 :AWPILGLPPT T0287 94 :ETMELL 2ahjC 128 :KSFEYR T0287 102 :IAENPNFLFSKFDRSI 2ahjC 136 :VVREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLLKLFVM 2ahjC 152 :ASDIEIRVYDTTAETRYMVLP T0287 158 :TDEEVNFY 2ahjC 174 :RPAGTEGW T0287 170 :TIEQYNDYV 2ahjC 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2ahjC 192 :KDCLIGVAI T0287 195 :G 2ahjC 202 :Q Number of specific fragments extracted= 11 number of extra gaps= 2 total=6433 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_541686064.pdb -s /var/tmp/to_scwrl_541686064.seq -o /var/tmp/from_scwrl_541686064.pdb > /var/tmp/scwrl_541686064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541686064.pdb Number of alignments=948 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-adpstyle1.a2m # 2ahjC read from T0287-2ahjC-t2k-local-adpstyle1.a2m # found chain 2ahjC in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2ahjC 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6434 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-local-adpstyle5.a2m # found chain 2ahjC in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6434 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 15 :QAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIG 2ahjC 74 :LTDGTAAVAQYG T0287 108 :FLFSKFD 2ahjC 86 :YLGPQGE T0287 128 :PIMF 2ahjC 93 :YIVA T0287 145 :YG 2ahjC 97 :VE T0287 148 :NLPLLKLFV 2ahjC 99 :DTPTLKNVI T0287 159 :D 2ahjC 110 :S T0287 163 :NFYANLKTIEQYNDY 2ahjC 118 :PILGLPPTWYKSFEY T0287 180 :D 2ahjC 133 :R T0287 183 :MKFDLEKYMKEKGVQNA 2ahjC 136 :VVREPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=6445 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1838987062.pdb -s /var/tmp/to_scwrl_1838987062.seq -o /var/tmp/from_scwrl_1838987062.pdb > /var/tmp/scwrl_1838987062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838987062.pdb Number of alignments=949 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ahjC read from T0287-2ahjC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ahjC in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2ahjC 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDKV 2ahjC 53 :PRRGAELVARAWTDPEFRQLL T0287 69 :MKDYRAVIKSIGVDK 2ahjC 74 :LTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2ahjC 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2ahjC 110 :S T0287 164 :FYANLKTI 2ahjC 116 :AWPILGLP T0287 172 :EQYN 2ahjC 125 :TWYK T0287 176 :DY 2ahjC 131 :EY T0287 179 :R 2ahjC 133 :R T0287 182 :LMK 2ahjC 136 :VVR T0287 186 :DLEKYMKEKGVQNA 2ahjC 139 :EPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 2 total=6456 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_707900123.pdb -s /var/tmp/to_scwrl_707900123.seq -o /var/tmp/from_scwrl_707900123.pdb > /var/tmp/scwrl_707900123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_707900123.pdb Number of alignments=950 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2ahjC-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2ahjC-t2k-muscle.a2m.gz # 2ahjC read from T0287-2ahjC-t2k-muscle.a2m.gz # found chain 2ahjC in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2ahjC)I4 Warning: unaligning (T0287)K7 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)H6 Warning: unaligning (T0287)L8 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)H6 Warning: unaligning (T0287)F9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)A12 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ahjC)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ahjC)T115 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2ahjC)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2ahjC)R135 T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIK 2ahjC 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFE T0287 46 :TMHDFFKQMHTNKGALDKVLRNYM 2ahjC 50 :DFSPRRGAELVARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2ahjC 75 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2ahjC 110 :S T0287 114 :DRSILGIFLPFFSKPIMF 2ahjC 116 :AWPILGLPPTWYKSFEYR T0287 134 :SIREMDSQIELYGTNLPL 2ahjC 136 :VVREPRKVLSEMGTEIAS T0287 152 :LKLFVM 2ahjC 155 :IEIRVY T0287 158 :TDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2ahjC 162 :TTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 2 total=6464 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_87633068.pdb -s /var/tmp/to_scwrl_87633068.seq -o /var/tmp/from_scwrl_87633068.pdb > /var/tmp/scwrl_87633068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87633068.pdb Number of alignments=951 # command:# Prefix for input files set to 2b7eA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-global-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t04-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)Y72 because last residue in template chain is (2b7eA)R59 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6466 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1482858855.pdb -s /var/tmp/to_scwrl_1482858855.seq -o /var/tmp/from_scwrl_1482858855.pdb > /var/tmp/scwrl_1482858855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482858855.pdb Number of alignments=952 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-global-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t04-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)Y72 because last residue in template chain is (2b7eA)R59 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6468 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_87667731.pdb -s /var/tmp/to_scwrl_87667731.seq -o /var/tmp/from_scwrl_87667731.pdb > /var/tmp/scwrl_87667731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87667731.pdb Number of alignments=953 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-local-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t04-local-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6469 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_86619784.pdb -s /var/tmp/to_scwrl_86619784.seq -o /var/tmp/from_scwrl_86619784.pdb > /var/tmp/scwrl_86619784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86619784.pdb Number of alignments=954 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t04-local-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t04-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 22 :LIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 9 :FITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6470 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_987528889.pdb -s /var/tmp/to_scwrl_987528889.seq -o /var/tmp/from_scwrl_987528889.pdb > /var/tmp/scwrl_987528889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_987528889.pdb Number of alignments=955 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-global-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t2k-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)Y72 because last residue in template chain is (2b7eA)R59 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 3 number of extra gaps= 1 total=6473 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1504502442.pdb -s /var/tmp/to_scwrl_1504502442.seq -o /var/tmp/from_scwrl_1504502442.pdb > /var/tmp/scwrl_1504502442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1504502442.pdb Number of alignments=956 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-global-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t2k-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=6476 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1104548173.pdb -s /var/tmp/to_scwrl_1104548173.seq -o /var/tmp/from_scwrl_1104548173.pdb > /var/tmp/scwrl_1104548173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1104548173.pdb Number of alignments=957 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-local-adpstyle1.a2m # 2b7eA read from 2b7eA-T0287-t2k-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6477 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_522890961.pdb -s /var/tmp/to_scwrl_522890961.seq -o /var/tmp/from_scwrl_522890961.pdb > /var/tmp/scwrl_522890961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_522890961.pdb Number of alignments=958 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b7eA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2b7eA-T0287-t2k-local-adpstyle5.a2m # 2b7eA read from 2b7eA-T0287-t2k-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 21 :KLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 8 :EFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6478 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_33956203.pdb -s /var/tmp/to_scwrl_33956203.seq -o /var/tmp/from_scwrl_33956203.pdb > /var/tmp/scwrl_33956203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_33956203.pdb Number of alignments=959 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-simplesw-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-simplesw-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=6479 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1864778663.pdb -s /var/tmp/to_scwrl_1864778663.seq -o /var/tmp/from_scwrl_1864778663.pdb > /var/tmp/scwrl_1864778663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864778663.pdb Number of alignments=960 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-simplesw-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-simplesw-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=6480 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_948035198.pdb -s /var/tmp/to_scwrl_948035198.seq -o /var/tmp/from_scwrl_948035198.pdb > /var/tmp/scwrl_948035198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948035198.pdb Number of alignments=961 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t04-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDP T0287 66 :RNYMKD 2b7eA 37 :RYWMVD T0287 74 :AVIK 2b7eA 45 :PLWK T0287 189 :KYMKEKGVQNA 2b7eA 49 :KEMFEKYLSNR Number of specific fragments extracted= 5 number of extra gaps= 1 total=6485 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_885735237.pdb -s /var/tmp/to_scwrl_885735237.seq -o /var/tmp/from_scwrl_885735237.pdb > /var/tmp/scwrl_885735237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885735237.pdb Number of alignments=962 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNM 2b7eA 1 :GAMEA T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPR T0287 67 :NYM 2b7eA 38 :YWM T0287 158 :TD 2b7eA 41 :VD T0287 162 :V 2b7eA 45 :P T0287 182 :L 2b7eA 46 :L T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 7 number of extra gaps= 1 total=6492 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_445360712.pdb -s /var/tmp/to_scwrl_445360712.seq -o /var/tmp/from_scwrl_445360712.pdb > /var/tmp/scwrl_445360712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_445360712.pdb Number of alignments=963 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 180 :DLL 2b7eA 45 :PLW T0287 188 :EKYMKEKGVQNA 2b7eA 48 :KKEMFEKYLSNR Number of specific fragments extracted= 4 number of extra gaps= 1 total=6496 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_700922857.pdb -s /var/tmp/to_scwrl_700922857.seq -o /var/tmp/from_scwrl_700922857.pdb > /var/tmp/scwrl_700922857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700922857.pdb Number of alignments=964 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS T0287 198 :NA 2b7eA 58 :NR Number of specific fragments extracted= 4 number of extra gaps= 1 total=6500 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1199752406.pdb -s /var/tmp/to_scwrl_1199752406.seq -o /var/tmp/from_scwrl_1199752406.pdb > /var/tmp/scwrl_1199752406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199752406.pdb Number of alignments=965 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t04-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=6501 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_954187093.pdb -s /var/tmp/to_scwrl_954187093.seq -o /var/tmp/from_scwrl_954187093.pdb > /var/tmp/scwrl_954187093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_954187093.pdb Number of alignments=966 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6502 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_329196151.pdb -s /var/tmp/to_scwrl_329196151.seq -o /var/tmp/from_scwrl_329196151.pdb > /var/tmp/scwrl_329196151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329196151.pdb Number of alignments=967 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6504 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_499412463.pdb -s /var/tmp/to_scwrl_499412463.seq -o /var/tmp/from_scwrl_499412463.pdb > /var/tmp/scwrl_499412463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_499412463.pdb Number of alignments=968 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6506 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1380228753.pdb -s /var/tmp/to_scwrl_1380228753.seq -o /var/tmp/from_scwrl_1380228753.pdb > /var/tmp/scwrl_1380228753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380228753.pdb Number of alignments=969 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t06-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDP T0287 66 :RNYMKD 2b7eA 37 :RYWMVD T0287 74 :AVIK 2b7eA 45 :PLWK T0287 189 :KYMKEKGVQNA 2b7eA 49 :KEMFEKYLSNR Number of specific fragments extracted= 5 number of extra gaps= 1 total=6511 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_250205923.pdb -s /var/tmp/to_scwrl_250205923.seq -o /var/tmp/from_scwrl_250205923.pdb > /var/tmp/scwrl_250205923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_250205923.pdb Number of alignments=970 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNM 2b7eA 1 :GAMEA T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPR T0287 67 :NYM 2b7eA 38 :YWM T0287 158 :TD 2b7eA 41 :VD T0287 162 :V 2b7eA 45 :P T0287 182 :L 2b7eA 46 :L T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 7 number of extra gaps= 1 total=6518 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1400476185.pdb -s /var/tmp/to_scwrl_1400476185.seq -o /var/tmp/from_scwrl_1400476185.pdb > /var/tmp/scwrl_1400476185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1400476185.pdb Number of alignments=971 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 180 :DLL 2b7eA 45 :PLW T0287 188 :EKYMKEKGVQNA 2b7eA 48 :KKEMFEKYLSNR Number of specific fragments extracted= 4 number of extra gaps= 1 total=6522 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_29761332.pdb -s /var/tmp/to_scwrl_29761332.seq -o /var/tmp/from_scwrl_29761332.pdb > /var/tmp/scwrl_29761332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29761332.pdb Number of alignments=972 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS T0287 198 :NA 2b7eA 58 :NR Number of specific fragments extracted= 4 number of extra gaps= 1 total=6526 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_736499904.pdb -s /var/tmp/to_scwrl_736499904.seq -o /var/tmp/from_scwrl_736499904.pdb > /var/tmp/scwrl_736499904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736499904.pdb Number of alignments=973 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t06-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=6527 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_155332718.pdb -s /var/tmp/to_scwrl_155332718.seq -o /var/tmp/from_scwrl_155332718.pdb > /var/tmp/scwrl_155332718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155332718.pdb Number of alignments=974 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6528 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1799025934.pdb -s /var/tmp/to_scwrl_1799025934.seq -o /var/tmp/from_scwrl_1799025934.pdb > /var/tmp/scwrl_1799025934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1799025934.pdb Number of alignments=975 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6530 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_48958753.pdb -s /var/tmp/to_scwrl_48958753.seq -o /var/tmp/from_scwrl_48958753.pdb > /var/tmp/scwrl_48958753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_48958753.pdb Number of alignments=976 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6532 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1758948754.pdb -s /var/tmp/to_scwrl_1758948754.seq -o /var/tmp/from_scwrl_1758948754.pdb > /var/tmp/scwrl_1758948754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1758948754.pdb Number of alignments=977 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t2k-global-adpstyle1.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHD 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDP T0287 66 :RNYMKD 2b7eA 37 :RYWMVD T0287 74 :AVIK 2b7eA 45 :PLWK T0287 189 :KYMKEKGVQNA 2b7eA 49 :KEMFEKYLSNR Number of specific fragments extracted= 5 number of extra gaps= 1 total=6537 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1196700964.pdb -s /var/tmp/to_scwrl_1196700964.seq -o /var/tmp/from_scwrl_1196700964.pdb > /var/tmp/scwrl_1196700964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196700964.pdb Number of alignments=978 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-global-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MSNNM 2b7eA 1 :GAMEA T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPR T0287 67 :NYM 2b7eA 38 :YWM T0287 158 :TD 2b7eA 41 :VD T0287 162 :V 2b7eA 45 :P T0287 182 :L 2b7eA 46 :L T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 7 number of extra gaps= 1 total=6544 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_590644817.pdb -s /var/tmp/to_scwrl_590644817.seq -o /var/tmp/from_scwrl_590644817.pdb > /var/tmp/scwrl_590644817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_590644817.pdb Number of alignments=979 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :MS 2b7eA 1 :GA T0287 16 :KDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 3 :MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 180 :DL 2b7eA 45 :PL T0287 187 :LEKYMKEKGVQNA 2b7eA 47 :WKKEMFEKYLSNR Number of specific fragments extracted= 4 number of extra gaps= 1 total=6548 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1450452169.pdb -s /var/tmp/to_scwrl_1450452169.seq -o /var/tmp/from_scwrl_1450452169.pdb > /var/tmp/scwrl_1450452169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450452169.pdb Number of alignments=980 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 1 :M 2b7eA 1 :G T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMK 2b7eA 45 :PLWKKEMFEKYLS T0287 198 :NA 2b7eA 58 :NR Number of specific fragments extracted= 4 number of extra gaps= 1 total=6552 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1904601088.pdb -s /var/tmp/to_scwrl_1904601088.seq -o /var/tmp/from_scwrl_1904601088.pdb > /var/tmp/scwrl_1904601088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1904601088.pdb Number of alignments=981 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-adpstyle1.a2m # 2b7eA read from T0287-2b7eA-t2k-local-adpstyle1.a2m # found chain 2b7eA in template set T0287 17 :DKKEKLIESLQENELLNTDEKKKIIDQIKT 2b7eA 4 :EAEKEFITMLKENQVDSTWSFSRIISELGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=6553 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_678277885.pdb -s /var/tmp/to_scwrl_678277885.seq -o /var/tmp/from_scwrl_678277885.pdb > /var/tmp/scwrl_678277885.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678277885.pdb Number of alignments=982 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-local-adpstyle5.a2m # found chain 2b7eA in template set T0287 19 :KEKLIESLQENELLNTDEKKKIIDQIKTMHDFF 2b7eA 6 :EKEFITMLKENQVDSTWSFSRIISELGTRDPRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6554 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_785827378.pdb -s /var/tmp/to_scwrl_785827378.seq -o /var/tmp/from_scwrl_785827378.pdb > /var/tmp/scwrl_785827378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_785827378.pdb Number of alignments=983 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6556 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1992268819.pdb -s /var/tmp/to_scwrl_1992268819.seq -o /var/tmp/from_scwrl_1992268819.pdb > /var/tmp/scwrl_1992268819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1992268819.pdb Number of alignments=984 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b7eA read from T0287-2b7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b7eA in template set Warning: unaligning (T0287)D14 because first residue in template chain is (2b7eA)G1 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 T0287 15 :SKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 2 :AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 58 :KGALDKVLRNYMKD 2b7eA 45 :PLWKKEMFEKYLSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=6558 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_764897669.pdb -s /var/tmp/to_scwrl_764897669.seq -o /var/tmp/from_scwrl_764897669.pdb > /var/tmp/scwrl_764897669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764897669.pdb Number of alignments=985 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2b7eA-t04-muscle.a2m.gz # 2b7eA read from T0287-2b7eA-t04-muscle.a2m.gz # found chain 2b7eA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)K194 because last residue in template chain is (2b7eA)R59 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2b7eA 10 :ITMLKENQVDSTWSFSRIISELGTRDPRYWMVD T0287 123 :PFFSKPI 2b7eA 45 :PLWKKEM T0287 187 :LEKYMKE 2b7eA 52 :FEKYLSN Number of specific fragments extracted= 4 number of extra gaps= 1 total=6562 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1773356266.pdb -s /var/tmp/to_scwrl_1773356266.seq -o /var/tmp/from_scwrl_1773356266.pdb > /var/tmp/scwrl_1773356266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1773356266.pdb Number of alignments=986 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2b7eA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2b7eA-t2k-muscle.a2m.gz # 2b7eA read from T0287-2b7eA-t2k-muscle.a2m.gz # found chain 2b7eA in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (2b7eA)D44 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (2b7eA)D44 Warning: unaligning (T0287)K194 because last residue in template chain is (2b7eA)R59 T0287 1 :MSNNMRKLF 2b7eA 1 :GAMEAEKEF T0287 23 :IESLQENEL 2b7eA 10 :ITMLKENQV T0287 67 :NYMKDYRAVIKSIGVD 2b7eA 19 :DSTWSFSRIISELGTR T0287 105 :NPNFLFSK 2b7eA 35 :DPRYWMVD T0287 123 :PFFSKPI 2b7eA 45 :PLWKKEM T0287 187 :LEKYMKE 2b7eA 52 :FEKYLSN Number of specific fragments extracted= 6 number of extra gaps= 1 total=6568 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1349287615.pdb -s /var/tmp/to_scwrl_1349287615.seq -o /var/tmp/from_scwrl_1349287615.pdb > /var/tmp/scwrl_1349287615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349287615.pdb Number of alignments=987 # command:# Prefix for input files set to 2cunA/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-global-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t04-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cunA 76 :LSELLDQHVEYIEDIFGRY T0287 20 :EKLIESLQENELL 2cunA 96 :REKIKELKSGEVA T0287 33 :NTDEKKKIIDQIKTMHDFF 2cunA 126 :EECEKTFLVKKLSKVIDYV T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGV 2cunA 172 :FLMEKEIEALMRAYYSKDSPKIYVLGGAKV T0287 82 :DKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 2cunA 203 :DSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDY T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVNFY 2cunA 255 :VKHAEEILDEFYPYIRTPVDFAVDYKGERVE T0287 166 :ANLKTIEQYNDYVRDLLMKF 2cunA 304 :IGKRTAEKYREILMKARIIV T0287 186 :DLEKYMKEKGVQN 2cunA 360 :HSIASIQKYGITG Number of specific fragments extracted= 8 number of extra gaps= 0 total=6576 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1869445842.pdb -s /var/tmp/to_scwrl_1869445842.seq -o /var/tmp/from_scwrl_1869445842.pdb > /var/tmp/scwrl_1869445842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1869445842.pdb Number of alignments=988 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-global-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t04-global-adpstyle5.a2m # found chain 2cunA in template set T0287 5 :MRKL 2cunA 4 :LEDF T0287 9 :FSMIADSKDKK 2cunA 39 :LPTIRYLIESG T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTM 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNK T0287 52 :KQMHTNKGALDKVLRNYMKD 2cunA 124 :PIEECEKTFLVKKLSKVIDY T0287 72 :YRAVIKSIGVDKFKKVY 2cunA 153 :HRSQPSLVGFARIKPMI T0287 89 :RLLESE 2cunA 172 :FLMEKE T0287 96 :MELLHAIAENPN 2cunA 178 :IEALMRAYYSKD T0287 108 :FLF 2cunA 210 :NVL T0287 111 :SKFDRSIL 2cunA 215 :ERADLVLT T0287 119 :GIFLPFFSKPIMFKMS 2cunA 224 :GLVANVFTLAKGFDLG T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cunA 255 :VKHAEEILDEFYPYIRTPVDFAVDYKGER T0287 164 :FYANLKTIEQYNDYVRDLLM 2cunA 302 :MDIGKRTAEKYREILMKARI T0287 184 :KFDLEKY 2cunA 330 :VFEREEF T0287 191 :MKEKGV 2cunA 365 :IQKYGI T0287 197 :QNA 2cunA 403 :EKF Number of specific fragments extracted= 15 number of extra gaps= 0 total=6591 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_148763581.pdb -s /var/tmp/to_scwrl_148763581.seq -o /var/tmp/from_scwrl_148763581.pdb > /var/tmp/scwrl_148763581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_148763581.pdb Number of alignments=989 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-local-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t04-local-adpstyle1.a2m # found chain 2cunA in template set Warning: unaligning (T0287)L168 because first residue in template chain is (2cunA)M1 T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQN 2cunA 2 :FRLEDFNFHNKTVFLRVDLNSPMKDGKIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=6592 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1383243818.pdb -s /var/tmp/to_scwrl_1383243818.seq -o /var/tmp/from_scwrl_1383243818.pdb > /var/tmp/scwrl_1383243818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1383243818.pdb Number of alignments=990 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t04-local-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t04-local-adpstyle5.a2m # found chain 2cunA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6592 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-global-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t2k-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cunA 76 :LSELLDQHVEYIEDIFGRY T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKFKKVY 2cunA 153 :HRSQPSLVGFARIKPMI T0287 89 :RLLESETMELLHAIAENP 2cunA 172 :FLMEKEIEALMRAYYSKD T0287 107 :NFLFS 2cunA 209 :ENVLR T0287 112 :KFDRSIL 2cunA 216 :RADLVLT T0287 119 :GIFLPFFSKPIMFKMSIREMD 2cunA 224 :GLVANVFTLAKGFDLGRKNVE T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANL 2cunA 260 :EILDEFYPYIRTPVDFAVDYKGERVEIDL T0287 169 :KTIEQYNDYVRDLLMKF 2cunA 307 :RTAEKYREILMKARIIV T0287 186 :DLEKYMKEKGVQNA 2cunA 360 :HSIASIQKYGITGI Number of specific fragments extracted= 10 number of extra gaps= 0 total=6602 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1586740859.pdb -s /var/tmp/to_scwrl_1586740859.seq -o /var/tmp/from_scwrl_1586740859.pdb > /var/tmp/scwrl_1586740859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1586740859.pdb Number of alignments=991 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-global-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t2k-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKK 2cunA 32 :DARFKAVLPTIRYLIESG T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKFKK 2cunA 153 :HRSQPSLVGFARIKP T0287 88 :Y 2cunA 169 :I T0287 89 :RLLESE 2cunA 172 :FLMEKE T0287 96 :MELLHAIAENPN 2cunA 178 :IEALMRAYYSKD T0287 108 :FLFS 2cunA 210 :NVLR T0287 112 :KFDRSIL 2cunA 216 :RADLVLT T0287 119 :GIFLPFFSKPIMFKMSIREMD 2cunA 224 :GLVANVFTLAKGFDLGRKNVE T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNF 2cunA 260 :EILDEFYPYIRTPVDFAVDYKGERV T0287 165 :YANLKTIEQYNDYVRDLLM 2cunA 303 :DIGKRTAEKYREILMKARI T0287 184 :KFDLEKY 2cunA 330 :VFEREEF T0287 191 :MKE 2cunA 347 :IAD T0287 194 :KGVQNA 2cunA 400 :ISYEKF Number of specific fragments extracted= 15 number of extra gaps= 0 total=6617 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1096798778.pdb -s /var/tmp/to_scwrl_1096798778.seq -o /var/tmp/from_scwrl_1096798778.pdb > /var/tmp/scwrl_1096798778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1096798778.pdb Number of alignments=992 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-local-adpstyle1.a2m # 2cunA read from 2cunA-T0287-t2k-local-adpstyle1.a2m # found chain 2cunA in template set T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGVQN 2cunA 3 :RLEDFNFHNKTVFLRVDLNSPMKDGKIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=6618 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_121495408.pdb -s /var/tmp/to_scwrl_121495408.seq -o /var/tmp/from_scwrl_121495408.pdb > /var/tmp/scwrl_121495408.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121495408.pdb Number of alignments=993 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cunA-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cunA-T0287-t2k-local-adpstyle5.a2m # 2cunA read from 2cunA-T0287-t2k-local-adpstyle5.a2m # found chain 2cunA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6618 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-simplesw-adpstyle1.a2m # 2cunA read from T0287-2cunA-simplesw-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6619 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2032101571.pdb -s /var/tmp/to_scwrl_2032101571.seq -o /var/tmp/from_scwrl_2032101571.pdb > /var/tmp/scwrl_2032101571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2032101571.pdb Number of alignments=994 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-simplesw-adpstyle5.a2m # 2cunA read from T0287-2cunA-simplesw-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6622 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1797721635.pdb -s /var/tmp/to_scwrl_1797721635.seq -o /var/tmp/from_scwrl_1797721635.pdb > /var/tmp/scwrl_1797721635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1797721635.pdb Number of alignments=995 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-adpstyle1.a2m # 2cunA read from T0287-2cunA-t04-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 9 :FHNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKII 2cunA 47 :ESGAKVV T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNL 2cunA 57 :HQGKPYSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFAR T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cunA 180 :ALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANV Number of specific fragments extracted= 5 number of extra gaps= 0 total=6627 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1321247814.pdb -s /var/tmp/to_scwrl_1321247814.seq -o /var/tmp/from_scwrl_1321247814.pdb > /var/tmp/scwrl_1321247814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1321247814.pdb Number of alignments=996 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 10 :HNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKIIDQIKTMH 2cunA 70 :EEHARVLSELLDQH T0287 49 :DFF 2cunA 89 :DIF T0287 52 :KQMHTNKGALDKVLRNYM 2cunA 100 :KELKSGEVAILENLRFSA T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2cunA 123 :KPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQ T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 2cunA 157 :PSLVGFARIKPMIMGFLMEKEIEALMRAYYSKDS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 2cunA 191 :PKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGR T0287 190 :YMKEKGVQN 2cunA 245 :FMKKKGLLD Number of specific fragments extracted= 9 number of extra gaps= 0 total=6636 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_838805017.pdb -s /var/tmp/to_scwrl_838805017.seq -o /var/tmp/from_scwrl_838805017.pdb > /var/tmp/scwrl_838805017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838805017.pdb Number of alignments=997 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 6 :RKLFSMIA 2cunA 40 :PTIRYLIE T0287 14 :DSKD 2cunA 62 :YSED T0287 21 :KLIESLQENEL 2cunA 74 :RVLSELLDQHV T0287 38 :KKIIDQIKTM 2cunA 93 :RYAREKIKEL T0287 53 :QMHTNKGALDKVLRN 2cunA 125 :IEECEKTFLVKKLSK T0287 68 :YMKDYRAVIKSIGVDK 2cunA 174 :MEKEIEALMRAYYSKD T0287 84 :FKKVYRLLESE 2cunA 205 :LKVVENVLRRE T0287 96 :MELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 240 :RKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTI 2cunA 305 :GKRTA T0287 176 :DYVRDLLMKFDL 2cunA 310 :EKYREILMKARI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6647 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2126917787.pdb -s /var/tmp/to_scwrl_2126917787.seq -o /var/tmp/from_scwrl_2126917787.pdb > /var/tmp/scwrl_2126917787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2126917787.pdb Number of alignments=998 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 5 :MRKLFSMIADSK 2cunA 38 :VLPTIRYLIESG T0287 20 :EKLIESLQE 2cunA 70 :EEHARVLSE T0287 31 :LLNTD 2cunA 79 :LLDQH T0287 36 :EKKKIIDQIKTM 2cunA 91 :FGRYAREKIKEL T0287 49 :DFFKQMHTN 2cunA 132 :FLVKKLSKV T0287 60 :ALDKVLRNYMKDY 2cunA 173 :LMEKEIEALMRAY T0287 73 :RAVIKSI 2cunA 209 :ENVLRRE T0287 80 :GVDKFKKVYRLLES 2cunA 235 :GFDLGRKNVEFMKK T0287 106 :PNFL 2cunA 249 :KGLL T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSI 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKFD 2cunA 306 :KRTAEKYREILMKAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=6661 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1820660277.pdb -s /var/tmp/to_scwrl_1820660277.seq -o /var/tmp/from_scwrl_1820660277.pdb > /var/tmp/scwrl_1820660277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820660277.pdb Number of alignments=999 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-adpstyle1.a2m # 2cunA read from T0287-2cunA-t04-local-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6662 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_71550124.pdb -s /var/tmp/to_scwrl_71550124.seq -o /var/tmp/from_scwrl_71550124.pdb > /var/tmp/scwrl_71550124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71550124.pdb Number of alignments=1000 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-local-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6665 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_229640063.pdb -s /var/tmp/to_scwrl_229640063.seq -o /var/tmp/from_scwrl_229640063.pdb > /var/tmp/scwrl_229640063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_229640063.pdb Number of alignments=1001 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 85 :KKV 2cunA 240 :RKN T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 243 :VEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTIE 2cunA 305 :GKRTAE T0287 177 :YVRDLLMKF 2cunA 311 :KYREILMKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=6669 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1073652817.pdb -s /var/tmp/to_scwrl_1073652817.seq -o /var/tmp/from_scwrl_1073652817.pdb > /var/tmp/scwrl_1073652817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073652817.pdb Number of alignments=1002 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 20 :EKLIESLQENELLNT 2cunA 175 :EKEIEALMRAYYSKD T0287 37 :KKKI 2cunA 190 :SPKI T0287 44 :IKTMHDFFKQMHTNK 2cunA 201 :VEDSLKVVENVLRRE T0287 59 :GALDK 2cunA 224 :GLVAN T0287 64 :VLRNY 2cunA 232 :LAKGF T0287 69 :MKDYRAVIKSIG 2cunA 239 :GRKNVEFMKKKG T0287 81 :VDKFKKVYRLLES 2cunA 252 :LDYVKHAEEILDE T0287 121 :FLPFFSKPIMFKMSI 2cunA 265 :FYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKF 2cunA 306 :KRTAEKYREILMKA Number of specific fragments extracted= 11 number of extra gaps= 0 total=6680 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_101311456.pdb -s /var/tmp/to_scwrl_101311456.seq -o /var/tmp/from_scwrl_101311456.pdb > /var/tmp/scwrl_101311456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101311456.pdb Number of alignments=1003 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-adpstyle1.a2m # 2cunA read from T0287-2cunA-t06-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 9 :FHNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKII 2cunA 47 :ESGAKVV T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNL 2cunA 57 :HQGKPYSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFAR T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cunA 180 :ALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANV Number of specific fragments extracted= 5 number of extra gaps= 0 total=6685 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_966139968.pdb -s /var/tmp/to_scwrl_966139968.seq -o /var/tmp/from_scwrl_966139968.pdb > /var/tmp/scwrl_966139968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_966139968.pdb Number of alignments=1004 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 10 :HNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKIIDQIKTMH 2cunA 70 :EEHARVLSELLDQH T0287 49 :DFF 2cunA 89 :DIF T0287 52 :KQMHTNKGALDKVLRNYM 2cunA 100 :KELKSGEVAILENLRFSA T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2cunA 123 :KPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQ T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 2cunA 157 :PSLVGFARIKPMIMGFLMEKEIEALMRAYYSKDS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 2cunA 191 :PKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGR T0287 190 :YMKEKGVQN 2cunA 245 :FMKKKGLLD Number of specific fragments extracted= 9 number of extra gaps= 0 total=6694 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1228985534.pdb -s /var/tmp/to_scwrl_1228985534.seq -o /var/tmp/from_scwrl_1228985534.pdb > /var/tmp/scwrl_1228985534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228985534.pdb Number of alignments=1005 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 6 :RKLFSMIA 2cunA 40 :PTIRYLIE T0287 14 :DSKD 2cunA 62 :YSED T0287 21 :KLIESLQENEL 2cunA 74 :RVLSELLDQHV T0287 38 :KKIIDQIKTM 2cunA 93 :RYAREKIKEL T0287 53 :QMHTNKGALDKVLRN 2cunA 125 :IEECEKTFLVKKLSK T0287 68 :YMKDYRAVIKSIGVDK 2cunA 174 :MEKEIEALMRAYYSKD T0287 84 :FKKVYRLLESE 2cunA 205 :LKVVENVLRRE T0287 96 :MELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 240 :RKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTI 2cunA 305 :GKRTA T0287 176 :DYVRDLLMKFDL 2cunA 310 :EKYREILMKARI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6705 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1900337391.pdb -s /var/tmp/to_scwrl_1900337391.seq -o /var/tmp/from_scwrl_1900337391.pdb > /var/tmp/scwrl_1900337391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1900337391.pdb Number of alignments=1006 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 5 :MRKLFSMIADSK 2cunA 38 :VLPTIRYLIESG T0287 20 :EKLIESLQE 2cunA 70 :EEHARVLSE T0287 31 :LLNTD 2cunA 79 :LLDQH T0287 36 :EKKKIIDQIKTM 2cunA 91 :FGRYAREKIKEL T0287 49 :DFFKQMHTN 2cunA 132 :FLVKKLSKV T0287 60 :ALDKVLRNYMKDY 2cunA 173 :LMEKEIEALMRAY T0287 73 :RAVIKSI 2cunA 209 :ENVLRRE T0287 80 :GVDKFKKVYRLLES 2cunA 235 :GFDLGRKNVEFMKK T0287 106 :PNFL 2cunA 249 :KGLL T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSI 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKFD 2cunA 306 :KRTAEKYREILMKAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=6719 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1015098721.pdb -s /var/tmp/to_scwrl_1015098721.seq -o /var/tmp/from_scwrl_1015098721.pdb > /var/tmp/scwrl_1015098721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1015098721.pdb Number of alignments=1007 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-adpstyle1.a2m # 2cunA read from T0287-2cunA-t06-local-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6720 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_840450642.pdb -s /var/tmp/to_scwrl_840450642.seq -o /var/tmp/from_scwrl_840450642.pdb > /var/tmp/scwrl_840450642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_840450642.pdb Number of alignments=1008 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-local-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6723 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_949554709.pdb -s /var/tmp/to_scwrl_949554709.seq -o /var/tmp/from_scwrl_949554709.pdb > /var/tmp/scwrl_949554709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_949554709.pdb Number of alignments=1009 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 85 :KKV 2cunA 240 :RKN T0287 99 :LHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 243 :VEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 167 :NLKTIE 2cunA 305 :GKRTAE T0287 177 :YVRDLLMKF 2cunA 311 :KYREILMKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=6727 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1605743537.pdb -s /var/tmp/to_scwrl_1605743537.seq -o /var/tmp/from_scwrl_1605743537.pdb > /var/tmp/scwrl_1605743537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1605743537.pdb Number of alignments=1010 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 20 :EKLIESLQENELLNT 2cunA 175 :EKEIEALMRAYYSKD T0287 37 :KKKI 2cunA 190 :SPKI T0287 44 :IKTMHDFFKQMHTNK 2cunA 201 :VEDSLKVVENVLRRE T0287 59 :GALDK 2cunA 224 :GLVAN T0287 64 :VLRNY 2cunA 232 :LAKGF T0287 69 :MKDYRAVIKSIG 2cunA 239 :GRKNVEFMKKKG T0287 81 :VDKFKKVYRLLES 2cunA 252 :LDYVKHAEEILDE T0287 121 :FLPFFSKPIMFKMSI 2cunA 265 :FYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKF 2cunA 306 :KRTAEKYREILMKA Number of specific fragments extracted= 11 number of extra gaps= 0 total=6738 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_143419164.pdb -s /var/tmp/to_scwrl_143419164.seq -o /var/tmp/from_scwrl_143419164.pdb > /var/tmp/scwrl_143419164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_143419164.pdb Number of alignments=1011 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-adpstyle1.a2m # 2cunA read from T0287-2cunA-t2k-global-adpstyle1.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 9 :FHNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKII 2cunA 47 :ESGAKVV T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNL 2cunA 57 :HQGKPYSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFAR T0287 150 :PLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cunA 180 :ALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANV Number of specific fragments extracted= 5 number of extra gaps= 0 total=6743 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_706672150.pdb -s /var/tmp/to_scwrl_706672150.seq -o /var/tmp/from_scwrl_706672150.pdb > /var/tmp/scwrl_706672150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_706672150.pdb Number of alignments=1012 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-global-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 3 :NNMRKLFSMIADSKDKKEKLIESLQENELLNT 2cunA 10 :HNKTVFLRVDLNSPMKDGKIISDARFKAVLPT T0287 35 :DEKKKIIDQIKTMH 2cunA 70 :EEHARVLSELLDQH T0287 49 :DFF 2cunA 89 :DIF T0287 52 :KQMHTNKGALDKVLRNYM 2cunA 100 :KELKSGEVAILENLRFSA T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2cunA 123 :KPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQ T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREM 2cunA 157 :PSLVGFARIKPMIMGFLMEKEIEALMRAYYSKDS T0287 140 :SQIELYGTNLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEK 2cunA 191 :PKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGR T0287 190 :YMKEKGVQN 2cunA 245 :FMKKKGLLD Number of specific fragments extracted= 9 number of extra gaps= 0 total=6752 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_136537775.pdb -s /var/tmp/to_scwrl_136537775.seq -o /var/tmp/from_scwrl_136537775.pdb > /var/tmp/scwrl_136537775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136537775.pdb Number of alignments=1013 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 20 :EKLIES 2cunA 43 :RYLIES T0287 27 :QENELLNTDEKKKIIDQI 2cunA 62 :YSEDYTTTEEHARVLSEL T0287 45 :KTMHDFFKQMHT 2cunA 93 :RYAREKIKELKS T0287 57 :NKGALDKVLRN 2cunA 129 :EKTFLVKKLSK T0287 70 :KDYRAVIKSIGVDK 2cunA 176 :KEIEALMRAYYSKD T0287 84 :FKKVYRLLESE 2cunA 205 :LKVVENVLRRE T0287 96 :MELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 240 :RKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 154 :LFV 2cunA 301 :IMD T0287 167 :NLKTIEQ 2cunA 305 :GKRTAEK T0287 178 :VRDLLMKFDL 2cunA 312 :YREILMKARI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6763 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_929246543.pdb -s /var/tmp/to_scwrl_929246543.seq -o /var/tmp/from_scwrl_929246543.pdb > /var/tmp/scwrl_929246543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929246543.pdb Number of alignments=1014 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 5 :MRKLFSMIADSK 2cunA 38 :VLPTIRYLIESG T0287 20 :EKLIESLQE 2cunA 70 :EEHARVLSE T0287 31 :LLNTD 2cunA 79 :LLDQH T0287 36 :EKKKIIDQIKTM 2cunA 91 :FGRYAREKIKEL T0287 49 :DFFKQMHTN 2cunA 132 :FLVKKLSKV T0287 60 :ALDKVLRNYMKDY 2cunA 173 :LMEKEIEALMRAY T0287 73 :RAVIKSI 2cunA 209 :ENVLRRE T0287 80 :GVDKFKKVYRLLES 2cunA 235 :GFDLGRKNVEFMKK T0287 106 :PNFL 2cunA 249 :KGLL T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSI 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKFD 2cunA 306 :KRTAEKYREILMKAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=6777 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_551457323.pdb -s /var/tmp/to_scwrl_551457323.seq -o /var/tmp/from_scwrl_551457323.pdb > /var/tmp/scwrl_551457323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_551457323.pdb Number of alignments=1015 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-adpstyle1.a2m # 2cunA read from T0287-2cunA-t2k-local-adpstyle1.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTD 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=6778 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_901435445.pdb -s /var/tmp/to_scwrl_901435445.seq -o /var/tmp/from_scwrl_901435445.pdb > /var/tmp/scwrl_901435445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901435445.pdb Number of alignments=1016 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-local-adpstyle5.a2m # found chain 2cunA in template set T0287 110 :FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMK 2cunA 313 :REILMK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6781 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_555119162.pdb -s /var/tmp/to_scwrl_555119162.seq -o /var/tmp/from_scwrl_555119162.pdb > /var/tmp/scwrl_555119162.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_555119162.pdb Number of alignments=1017 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cunA in template set T0287 84 :FKKVY 2cunA 239 :GRKNV T0287 100 :HAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTNLPLLK 2cunA 244 :EFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH T0287 154 :LFV 2cunA 301 :IMD T0287 167 :NLKTIEQY 2cunA 305 :GKRTAEKY T0287 179 :RDLLMKF 2cunA 313 :REILMKA Number of specific fragments extracted= 5 number of extra gaps= 0 total=6786 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1900744938.pdb -s /var/tmp/to_scwrl_1900744938.seq -o /var/tmp/from_scwrl_1900744938.pdb > /var/tmp/scwrl_1900744938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1900744938.pdb Number of alignments=1018 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cunA read from T0287-2cunA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cunA in template set T0287 20 :EKLIESLQENELLNT 2cunA 175 :EKEIEALMRAYYSKD T0287 37 :KKKI 2cunA 190 :SPKI T0287 44 :IKTMHDFFKQMHTNK 2cunA 201 :VEDSLKVVENVLRRE T0287 59 :GALDK 2cunA 224 :GLVAN T0287 64 :VLRNY 2cunA 232 :LAKGF T0287 69 :MKDYRAVIKSIG 2cunA 239 :GRKNVEFMKKKG T0287 81 :VDKFKKVYRLLES 2cunA 252 :LDYVKHAEEILDE T0287 121 :FLPFFSKPIMFKMSI 2cunA 265 :FYPYIRTPVDFAVDY T0287 139 :DSQ 2cunA 280 :KGE T0287 152 :LKLFVMTDEEVNFYANLK 2cunA 283 :RVEIDLLSENRGLLHQYQ T0287 172 :EQYNDYVRDLLMKF 2cunA 306 :KRTAEKYREILMKA Number of specific fragments extracted= 11 number of extra gaps= 0 total=6797 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_623397640.pdb -s /var/tmp/to_scwrl_623397640.seq -o /var/tmp/from_scwrl_623397640.pdb > /var/tmp/scwrl_623397640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623397640.pdb Number of alignments=1019 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cunA-t04-muscle.a2m.gz # 2cunA read from T0287-2cunA-t04-muscle.a2m.gz # found chain 2cunA in template set T0287 1 :M 2cunA 1 :M T0287 2 :SNNMRKLFSMIADSKDKKEKLI 2cunA 32 :DARFKAVLPTIRYLIESGAKVV T0287 24 :ESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 100 :KELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKFKKVYR 2cunA 153 :HRSQPSLVGFARIKPMIM T0287 90 :LLESETMELLHAIAENPNFLF 2cunA 172 :FLMEKEIEALMRAYYSKDSPK T0287 111 :SKFDRSILGIFLPF 2cunA 215 :ERADLVLTGGLVAN T0287 125 :FSKPIMFKMS 2cunA 230 :FTLAKGFDLG T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDE 2cunA 255 :VKHAEEILDEFYPYIRTPVDFAVDYK T0287 161 :EVNFYANLKTIEQYNDYVRDL 2cunA 299 :YQIMDIGKRTAEKYREILMKA T0287 182 :LMKFDLEKY 2cunA 328 :MGVFEREEF T0287 191 :MKEKGVQNA 2cunA 365 :IQKYGITGI Number of specific fragments extracted= 11 number of extra gaps= 0 total=6808 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_703882743.pdb -s /var/tmp/to_scwrl_703882743.seq -o /var/tmp/from_scwrl_703882743.pdb > /var/tmp/scwrl_703882743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_703882743.pdb Number of alignments=1020 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cunA-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cunA-t2k-muscle.a2m.gz # 2cunA read from T0287-2cunA-t2k-muscle.a2m.gz # found chain 2cunA in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cunA 76 :LSELLDQHVEYIEDIFGRY T0287 20 :EKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKD 2cunA 96 :REKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVND T0287 72 :YRAVIKSIGVDKF 2cunA 153 :HRSQPSLVGFARI T0287 85 :KKVYRLLESETMELLHAIAENPNFLFS 2cunA 167 :PMIMGFLMEKEIEALMRAYYSKDSPKI T0287 112 :KFDRSILG 2cunA 216 :RADLVLTG T0287 120 :IFLPFFSKPIMFKM 2cunA 229 :VFTLAKGFDLGRKN T0287 134 :SIREMDSQIELYGTNLPLLKLFVMTDE 2cunA 254 :YVKHAEEILDEFYPYIRTPVDFAVDYK T0287 161 :EVNFYANLKTIEQYNDYVRDL 2cunA 299 :YQIMDIGKRTAEKYREILMKA T0287 182 :LMKFDLEKY 2cunA 328 :MGVFEREEF T0287 191 :MKEKGVQNA 2cunA 365 :IQKYGITGI Number of specific fragments extracted= 10 number of extra gaps= 0 total=6818 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1136505109.pdb -s /var/tmp/to_scwrl_1136505109.seq -o /var/tmp/from_scwrl_1136505109.pdb > /var/tmp/scwrl_1136505109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1136505109.pdb Number of alignments=1021 # command:# Prefix for input files set to 2cw9A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-global-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t04-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)E193 because last residue in template chain is (2cw9A)I451 T0287 4 :NMRKLFSMIADSKDKKEKLIESLQE 2cw9A 272 :FIRASRALTDKVTDLLGGLFSKTEM T0287 38 :KKIIDQIKTMHDFFKQ 2cw9A 297 :SEVLTEILRVDPAFDK T0287 54 :MHTNKGA 2cw9A 316 :LKQCEND T0287 61 :LDKVLRNYMKDYRAVIKSIGVDKFKKVY 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQL T0287 89 :RLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMF 2cw9A 358 :AKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMV T0287 135 :IREMDSQIEL 2cw9A 401 :VRNPKGEVVE T0287 145 :YGTNLPLLKLFVMT 2cw9A 413 :PDKVLRMLYVWALC T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMK 2cw9A 427 :RDQDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6826 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_62654852.pdb -s /var/tmp/to_scwrl_62654852.seq -o /var/tmp/from_scwrl_62654852.pdb > /var/tmp/scwrl_62654852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62654852.pdb Number of alignments=1022 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-global-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t04-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)E193 because last residue in template chain is (2cw9A)I451 T0287 5 :MRKLFSMIADSKDKKEKLIESLQE 2cw9A 273 :IRASRALTDKVTDLLGGLFSKTEM T0287 38 :KKIIDQIKTMHDFFKQMH 2cw9A 297 :SEVLTEILRVDPAFDKDR T0287 56 :TNKGA 2cw9A 318 :QCEND T0287 61 :LDKVLRNYMKDYRAVIKS 2cw9A 324 :IPNVLEAMISGELDILKD T0287 79 :IGVDKFKKVYRLLESETMELL 2cw9A 353 :HPIQQAKALGLQFHSRILDID T0287 105 :NPNFLFSKFDRSILGIFLPFFSKPIMF 2cw9A 374 :NVDLAMGKMVEQGPVLIITFQAQLVMV T0287 135 :IREMDSQIELYGTNLP 2cw9A 401 :VRNPKGEVVEGDPDKV T0287 156 :VMTDEEVNFY 2cw9A 417 :LRMLYVWALC T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMK 2cw9A 427 :RDQDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=6835 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1800681522.pdb -s /var/tmp/to_scwrl_1800681522.seq -o /var/tmp/from_scwrl_1800681522.pdb > /var/tmp/scwrl_1800681522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800681522.pdb Number of alignments=1023 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-local-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t04-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 105 :NPNFLFSKFDRSILGIFLP 2cw9A 307 :DPAFDKDRFLKQCENDIIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=6836 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t04-local-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t04-local-adpstyle5.a2m # found chain 2cw9A in template set T0287 83 :KFKKVYRLLESE 2cw9A 357 :QAKALGLQFHSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6837 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-global-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t2k-global-adpstyle1.a2m # found chain 2cw9A in template set T0287 1 :MSNNMRKLFSMIADSKDKK 2cw9A 271 :AFIRASRALTDKVTDLLGG T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 2cw9A 290 :LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDI T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILD T0287 135 :IREMDSQIELYGTNLPLLKLFVMT 2cw9A 372 :IDNVDLAMGKMVEQGPVLIITFQA T0287 160 :EEVNFYAN 2cw9A 396 :QLVMVVRN T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 407 :EVVEGDPDKVLRMLYVWALCRDQDELNPYAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=6843 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1258000518.pdb -s /var/tmp/to_scwrl_1258000518.seq -o /var/tmp/from_scwrl_1258000518.pdb > /var/tmp/scwrl_1258000518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1258000518.pdb Number of alignments=1024 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-global-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t2k-global-adpstyle5.a2m # found chain 2cw9A in template set T0287 3 :NNMRKLFSMIADSKDKKEK 2cw9A 271 :AFIRASRALTDKVTDLLGG T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTN 2cw9A 290 :LFSKTEMSEVLTEILRVDPAFDKDRFL T0287 58 :KG 2cw9A 320 :EN T0287 60 :ALDKVLRNYMKDYRAVIK 2cw9A 323 :IIPNVLEAMISGELDILK T0287 89 :RLLESETMELLHAIAENPNFLFSKFDRSILG 2cw9A 341 :DWCYEATYSQLAHPIQQAKALGLQFHSRILD T0287 130 :MFKMSIRE 2cw9A 377 :LAMGKMVE T0287 148 :NLPLLKLFVMT 2cw9A 385 :QGPVLIITFQA T0287 160 :EEVNFYAN 2cw9A 396 :QLVMVVRN T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 407 :EVVEGDPDKVLRMLYVWALCRDQDELNPYAA Number of specific fragments extracted= 9 number of extra gaps= 0 total=6852 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2094756424.pdb -s /var/tmp/to_scwrl_2094756424.seq -o /var/tmp/from_scwrl_2094756424.pdb > /var/tmp/scwrl_2094756424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2094756424.pdb Number of alignments=1025 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-local-adpstyle1.a2m # 2cw9A read from 2cw9A-T0287-t2k-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGI 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=6853 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1450919510.pdb -s /var/tmp/to_scwrl_1450919510.seq -o /var/tmp/from_scwrl_1450919510.pdb > /var/tmp/scwrl_1450919510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450919510.pdb Number of alignments=1026 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cw9A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cw9A-T0287-t2k-local-adpstyle5.a2m # 2cw9A read from 2cw9A-T0287-t2k-local-adpstyle5.a2m # found chain 2cw9A in template set T0287 32 :LNTDEKKKIIDQIKTMHDFFKQMH 2cw9A 291 :FSKTEMSEVLTEILRVDPAFDKDR T0287 56 :TNKG 2cw9A 318 :QCEN T0287 60 :ALDKVLRNYMKDYRAVIKSIGVD 2cw9A 323 :IIPNVLEAMISGELDILKDWCYE T0287 83 :KFKKV 2cw9A 357 :QAKAL Number of specific fragments extracted= 4 number of extra gaps= 0 total=6857 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_431764686.pdb -s /var/tmp/to_scwrl_431764686.seq -o /var/tmp/from_scwrl_431764686.pdb > /var/tmp/scwrl_431764686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_431764686.pdb Number of alignments=1027 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-simplesw-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-simplesw-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6858 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-simplesw-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-simplesw-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6858 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t04-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)L181 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESL 2cw9A 272 :FIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVL T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMT 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVWA T0287 159 :DEEVNFYANLKTIEQYNDYVRD 2cw9A 429 :QDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=6862 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_786077794.pdb -s /var/tmp/to_scwrl_786077794.seq -o /var/tmp/from_scwrl_786077794.pdb > /var/tmp/scwrl_786077794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786077794.pdb Number of alignments=1028 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESL 2cw9A 271 :AFIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMI T0287 78 :SIGVDKFKKV 2cw9A 333 :SGELDILKDW T0287 90 :LLESETMELLHAIAEN 2cw9A 343 :CYEATYSQLAHPIQQA T0287 107 :NFLFSKFDRSILGI 2cw9A 359 :KALGLQFHSRILDI T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 2cw9A 388 :VLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYV T0287 165 :YANLKTIEQYNDYVRDLLMKFDL 2cw9A 423 :WALCRDQDELNPYAAWRLLDISA T0287 193 :EKGVQ 2cw9A 446 :SSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6870 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1430353650.pdb -s /var/tmp/to_scwrl_1430353650.seq -o /var/tmp/from_scwrl_1430353650.pdb > /var/tmp/scwrl_1430353650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1430353650.pdb Number of alignments=1029 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 195 :GVQ 2cw9A 448 :TEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=6879 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_104941317.pdb -s /var/tmp/to_scwrl_104941317.seq -o /var/tmp/from_scwrl_104941317.pdb > /var/tmp/scwrl_104941317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104941317.pdb Number of alignments=1030 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESLQ 2cw9A 272 :FIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNY 2cw9A 323 :IIPNVLEAM T0287 77 :KSIGVDKFKKVY 2cw9A 332 :ISGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 197 :Q 2cw9A 450 :Q Number of specific fragments extracted= 10 number of extra gaps= 0 total=6889 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_857627918.pdb -s /var/tmp/to_scwrl_857627918.seq -o /var/tmp/from_scwrl_857627918.pdb > /var/tmp/scwrl_857627918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_857627918.pdb Number of alignments=1031 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t04-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6890 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-local-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6890 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYAN 2cw9A 428 :DQDELNPYAA Number of specific fragments extracted= 8 number of extra gaps= 0 total=6898 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1659993714.pdb -s /var/tmp/to_scwrl_1659993714.seq -o /var/tmp/from_scwrl_1659993714.pdb > /var/tmp/scwrl_1659993714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659993714.pdb Number of alignments=1032 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set T0287 12 :IADSKDKKEKLIESLQ 2cw9A 273 :IRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYM 2cw9A 323 :IIPNVLEAMI T0287 78 :SIGVDKFKKVY 2cw9A 333 :SGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYA 2cw9A 428 :DQDELNPYA Number of specific fragments extracted= 9 number of extra gaps= 0 total=6907 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1178594133.pdb -s /var/tmp/to_scwrl_1178594133.seq -o /var/tmp/from_scwrl_1178594133.pdb > /var/tmp/scwrl_1178594133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1178594133.pdb Number of alignments=1033 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t06-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)L181 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESL 2cw9A 272 :FIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVL T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMT 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVWA T0287 159 :DEEVNFYANLKTIEQYNDYVRD 2cw9A 429 :QDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=6911 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_958939375.pdb -s /var/tmp/to_scwrl_958939375.seq -o /var/tmp/from_scwrl_958939375.pdb > /var/tmp/scwrl_958939375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_958939375.pdb Number of alignments=1034 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESL 2cw9A 271 :AFIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMI T0287 78 :SIGVDKFKKV 2cw9A 333 :SGELDILKDW T0287 90 :LLESETMELLHAIAEN 2cw9A 343 :CYEATYSQLAHPIQQA T0287 107 :NFLFSKFDRSILGI 2cw9A 359 :KALGLQFHSRILDI T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 2cw9A 388 :VLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYV T0287 165 :YANLKTIEQYNDYVRDLLMKFDL 2cw9A 423 :WALCRDQDELNPYAAWRLLDISA T0287 193 :EKGVQ 2cw9A 446 :SSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6919 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_478650035.pdb -s /var/tmp/to_scwrl_478650035.seq -o /var/tmp/from_scwrl_478650035.pdb > /var/tmp/scwrl_478650035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478650035.pdb Number of alignments=1035 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 195 :GVQ 2cw9A 448 :TEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=6928 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_260096021.pdb -s /var/tmp/to_scwrl_260096021.seq -o /var/tmp/from_scwrl_260096021.pdb > /var/tmp/scwrl_260096021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_260096021.pdb Number of alignments=1036 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESLQ 2cw9A 272 :FIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNY 2cw9A 323 :IIPNVLEAM T0287 77 :KSIGVDKFKKVY 2cw9A 332 :ISGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 197 :Q 2cw9A 450 :Q Number of specific fragments extracted= 10 number of extra gaps= 0 total=6938 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_711793119.pdb -s /var/tmp/to_scwrl_711793119.seq -o /var/tmp/from_scwrl_711793119.pdb > /var/tmp/scwrl_711793119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_711793119.pdb Number of alignments=1037 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t06-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6939 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-local-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6939 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYMKDYRAVIKSIG 2cw9A 323 :IIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYAN 2cw9A 428 :DQDELNPYAA Number of specific fragments extracted= 8 number of extra gaps= 0 total=6947 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1493748755.pdb -s /var/tmp/to_scwrl_1493748755.seq -o /var/tmp/from_scwrl_1493748755.pdb > /var/tmp/scwrl_1493748755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493748755.pdb Number of alignments=1038 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set T0287 12 :IADSKDKKEKLIESLQ 2cw9A 273 :IRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYM 2cw9A 323 :IIPNVLEAMI T0287 78 :SIGVDKFKKVY 2cw9A 333 :SGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYA 2cw9A 428 :DQDELNPYA Number of specific fragments extracted= 9 number of extra gaps= 0 total=6956 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1100546663.pdb -s /var/tmp/to_scwrl_1100546663.seq -o /var/tmp/from_scwrl_1100546663.pdb > /var/tmp/scwrl_1100546663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100546663.pdb Number of alignments=1039 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t2k-global-adpstyle1.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)L181 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESL 2cw9A 272 :FIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIM 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVL T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMT 2cw9A 397 :LVMVVRNPKGEVVEGDPDKVLRMLYVWA T0287 159 :DEEVNFYANLKTIEQYNDYVRD 2cw9A 429 :QDELNPYAAWRLLDISASSTEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=6960 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1661347827.pdb -s /var/tmp/to_scwrl_1661347827.seq -o /var/tmp/from_scwrl_1661347827.pdb > /var/tmp/scwrl_1661347827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661347827.pdb Number of alignments=1040 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-global-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESL 2cw9A 271 :AFIRASRALTDKVTDLL T0287 29 :NELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYR 2cw9A 288 :GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMI T0287 78 :SIGVDKFKKV 2cw9A 333 :SGELDILKDW T0287 90 :LLESETMELLHAIAEN 2cw9A 343 :CYEATYSQLAHPIQQA T0287 107 :NFLFSKFDRSILGI 2cw9A 359 :KALGLQFHSRILDI T0287 122 :LPFFSKPIMFKMSIREMDSQIELYGTNLPLLKLFV 2cw9A 388 :VLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYV T0287 165 :YANLKTIEQYNDYVRDLLMKFDL 2cw9A 423 :WALCRDQDELNPYAAWRLLDISA T0287 193 :EKGVQ 2cw9A 446 :SSTEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6968 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_952008646.pdb -s /var/tmp/to_scwrl_952008646.seq -o /var/tmp/from_scwrl_952008646.pdb > /var/tmp/scwrl_952008646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_952008646.pdb Number of alignments=1041 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)F9 because first residue in template chain is (2cw9A)N270 Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 2cw9A 307 :DPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 195 :GVQ 2cw9A 448 :TEQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=6976 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1243965827.pdb -s /var/tmp/to_scwrl_1243965827.seq -o /var/tmp/from_scwrl_1243965827.pdb > /var/tmp/scwrl_1243965827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243965827.pdb Number of alignments=1042 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set Warning: unaligning (T0287)N198 because last residue in template chain is (2cw9A)I451 T0287 11 :MIADSKDKKEKLIESLQ 2cw9A 272 :FIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNY 2cw9A 323 :IIPNVLEAM T0287 77 :KSIGVDKFKKVY 2cw9A 332 :ISGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYANLKTIE 2cw9A 428 :DQDELNPYAAWRLLD T0287 197 :Q 2cw9A 450 :Q Number of specific fragments extracted= 10 number of extra gaps= 0 total=6986 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_220536331.pdb -s /var/tmp/to_scwrl_220536331.seq -o /var/tmp/from_scwrl_220536331.pdb > /var/tmp/scwrl_220536331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220536331.pdb Number of alignments=1043 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-adpstyle1.a2m # 2cw9A read from T0287-2cw9A-t2k-local-adpstyle1.a2m # found chain 2cw9A in template set T0287 58 :KGALDKVLR 2cw9A 410 :EGDPDKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=6987 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-local-adpstyle5.a2m # found chain 2cw9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6987 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cw9A in template set T0287 10 :SMIADSKDKKEKLIESLQ 2cw9A 271 :AFIRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 52 :KQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVY 2cw9A 307 :DPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWC T0287 91 :LESETMELLHAIAENP 2cw9A 344 :YEATYSQLAHPIQQAK T0287 108 :FLFSKFDRSILGIFLPFFSKPIM 2cw9A 360 :ALGLQFHSRILDIDNVDLAMGKM T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYAN 2cw9A 428 :DQDELNPYAA Number of specific fragments extracted= 7 number of extra gaps= 0 total=6994 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1088546420.pdb -s /var/tmp/to_scwrl_1088546420.seq -o /var/tmp/from_scwrl_1088546420.pdb > /var/tmp/scwrl_1088546420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1088546420.pdb Number of alignments=1044 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cw9A read from T0287-2cw9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cw9A in template set T0287 12 :IADSKDKKEKLIESLQ 2cw9A 273 :IRASRALTDKVTDLLG T0287 30 :ELLNTDEKKKIIDQIKTM 2cw9A 289 :GLFSKTEMSEVLTEILRV T0287 48 :HDFFKQMHTN 2cw9A 313 :DRFLKQCEND T0287 60 :ALDKVLRNYM 2cw9A 323 :IIPNVLEAMI T0287 78 :SIGVDKFKKVY 2cw9A 333 :SGELDILKDWC T0287 91 :LESETMELLHAIAENPN 2cw9A 344 :YEATYSQLAHPIQQAKA T0287 109 :LFSKFDRSILGIFLPFFSKPIMF 2cw9A 361 :LGLQFHSRILDIDNVDLAMGKMV T0287 132 :KMSIREMDSQIELYGTNLPLLKLFVM 2cw9A 398 :VMVVRNPKGEVVEGDPDKVLRMLYVW T0287 158 :TDEEVNFYA 2cw9A 428 :DQDELNPYA Number of specific fragments extracted= 9 number of extra gaps= 0 total=7003 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_25728723.pdb -s /var/tmp/to_scwrl_25728723.seq -o /var/tmp/from_scwrl_25728723.pdb > /var/tmp/scwrl_25728723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25728723.pdb Number of alignments=1045 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cw9A-t04-muscle.a2m.gz # 2cw9A read from T0287-2cw9A-t04-muscle.a2m.gz # found chain 2cw9A in template set T0287 1 :MSNNMRKLFSMIADSKDK 2cw9A 272 :FIRASRALTDKVTDLLGG T0287 31 :LLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 2cw9A 290 :LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDI T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGI 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFY 2cw9A 373 :DNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVV T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 414 :DKVLRMLYVWALCRDQDELNPYAAWRLLDISASS Number of specific fragments extracted= 5 number of extra gaps= 0 total=7008 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_771993654.pdb -s /var/tmp/to_scwrl_771993654.seq -o /var/tmp/from_scwrl_771993654.pdb > /var/tmp/scwrl_771993654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_771993654.pdb Number of alignments=1046 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cw9A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cw9A-t2k-muscle.a2m.gz # 2cw9A read from T0287-2cw9A-t2k-muscle.a2m.gz # found chain 2cw9A in template set Warning: unaligning (T0287)M11 because first residue in template chain is (2cw9A)N270 T0287 12 :IADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKV 2cw9A 271 :AFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDI T0287 72 :YRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGI 2cw9A 324 :IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2cw9A 373 :DNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKG T0287 169 :KTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cw9A 407 :EVVEGDPDKVLRMLYVWALCRDQDELNPYAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=7012 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1989981865.pdb -s /var/tmp/to_scwrl_1989981865.seq -o /var/tmp/from_scwrl_1989981865.pdb > /var/tmp/scwrl_1989981865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1989981865.pdb Number of alignments=1047 # command:# Prefix for input files set to 2cz1A/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-global-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t04-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVM 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVN 2cz1A 162 :TTAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 4 total=7020 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_580847886.pdb -s /var/tmp/to_scwrl_580847886.seq -o /var/tmp/from_scwrl_580847886.pdb > /var/tmp/scwrl_580847886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_580847886.pdb Number of alignments=1048 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-global-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t04-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAEL T0287 57 :NKGALD 2cz1A 61 :ARAWTD T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVM 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVN 2cz1A 162 :TTAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQ 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIP Number of specific fragments extracted= 8 number of extra gaps= 4 total=7028 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_525254945.pdb -s /var/tmp/to_scwrl_525254945.seq -o /var/tmp/from_scwrl_525254945.pdb > /var/tmp/scwrl_525254945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_525254945.pdb Number of alignments=1049 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-local-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t04-local-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLP 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 5 number of extra gaps= 3 total=7033 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_465895859.pdb -s /var/tmp/to_scwrl_465895859.seq -o /var/tmp/from_scwrl_465895859.pdb > /var/tmp/scwrl_465895859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_465895859.pdb Number of alignments=1050 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t04-local-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t04-local-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 63 :KVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 68 :EFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS Number of specific fragments extracted= 4 number of extra gaps= 3 total=7037 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1284730628.pdb -s /var/tmp/to_scwrl_1284730628.seq -o /var/tmp/from_scwrl_1284730628.pdb > /var/tmp/scwrl_1284730628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1284730628.pdb Number of alignments=1051 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-global-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t2k-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDE 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVN 2cz1A 165 :ETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 4 total=7045 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1661760054.pdb -s /var/tmp/to_scwrl_1661760054.seq -o /var/tmp/from_scwrl_1661760054.pdb > /var/tmp/scwrl_1661760054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661760054.pdb Number of alignments=1052 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-global-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t2k-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 1 :MSNN 2cz1A 9 :ENAA T0287 10 :SMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHT 2cz1A 13 :PAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAEL T0287 57 :NKGALDK 2cz1A 61 :ARAWTDP T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 69 :FRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLF 2cz1A 137 :VREPRKVLSEMGTEIASDIEI T0287 156 :VMT 2cz1A 159 :VYD T0287 159 :DEEVN 2cz1A 163 :TAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=7056 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_528550711.pdb -s /var/tmp/to_scwrl_528550711.seq -o /var/tmp/from_scwrl_528550711.pdb > /var/tmp/scwrl_528550711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_528550711.pdb Number of alignments=1053 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-local-adpstyle1.a2m # 2cz1A read from 2cz1A-T0287-t2k-local-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLP 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 5 number of extra gaps= 3 total=7061 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_937928504.pdb -s /var/tmp/to_scwrl_937928504.seq -o /var/tmp/from_scwrl_937928504.pdb > /var/tmp/scwrl_937928504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_937928504.pdb Number of alignments=1054 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cz1A-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2cz1A-T0287-t2k-local-adpstyle5.a2m # 2cz1A read from 2cz1A-T0287-t2k-local-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 69 :FRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLL 2cz1A 137 :VREPRKVLSEMGTEIASD Number of specific fragments extracted= 5 number of extra gaps= 3 total=7066 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_772276926.pdb -s /var/tmp/to_scwrl_772276926.seq -o /var/tmp/from_scwrl_772276926.pdb > /var/tmp/scwrl_772276926.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772276926.pdb Number of alignments=1055 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-simplesw-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-simplesw-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7067 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-simplesw-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-simplesw-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7067 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t04-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2cz1A 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 3 total=7075 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_475823488.pdb -s /var/tmp/to_scwrl_475823488.seq -o /var/tmp/from_scwrl_475823488.pdb > /var/tmp/scwrl_475823488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475823488.pdb Number of alignments=1056 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEK 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2cz1A 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2cz1A 157 :IRVYDTTAE T0287 162 :VN 2cz1A 166 :TR T0287 166 :ANLK 2cz1A 170 :VLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=7086 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_241364368.pdb -s /var/tmp/to_scwrl_241364368.seq -o /var/tmp/from_scwrl_241364368.pdb > /var/tmp/scwrl_241364368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_241364368.pdb Number of alignments=1057 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKI 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2cz1A 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=7098 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1204041612.pdb -s /var/tmp/to_scwrl_1204041612.seq -o /var/tmp/from_scwrl_1204041612.pdb > /var/tmp/scwrl_1204041612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1204041612.pdb Number of alignments=1058 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 84 :F 2cz1A 116 :A T0287 87 :VYRLLES 2cz1A 119 :ILGLPPT T0287 94 :ETMELL 2cz1A 128 :KSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMT 2cz1A 170 :VLPQ T0287 159 :DEEVNFY 2cz1A 175 :PAGTEGW T0287 170 :TIEQYNDYV 2cz1A 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 13 number of extra gaps= 3 total=7111 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1261901282.pdb -s /var/tmp/to_scwrl_1261901282.seq -o /var/tmp/from_scwrl_1261901282.pdb > /var/tmp/scwrl_1261901282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1261901282.pdb Number of alignments=1059 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t04-local-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7112 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-local-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7112 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2cz1A 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=7124 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1671718018.pdb -s /var/tmp/to_scwrl_1671718018.seq -o /var/tmp/from_scwrl_1671718018.pdb > /var/tmp/scwrl_1671718018.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1671718018.pdb Number of alignments=1060 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGVDK 2cz1A 73 :LLTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2cz1A 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NLKTI 2cz1A 119 :ILGLP T0287 172 :EQYN 2cz1A 125 :TWYK T0287 176 :DYV 2cz1A 131 :EYR T0287 183 :M 2cz1A 137 :V T0287 185 :FDLEKYMKEKGVQNA 2cz1A 138 :REPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 3 total=7135 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1308982929.pdb -s /var/tmp/to_scwrl_1308982929.seq -o /var/tmp/from_scwrl_1308982929.pdb > /var/tmp/scwrl_1308982929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1308982929.pdb Number of alignments=1061 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t06-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2cz1A 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 3 total=7143 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2119529200.pdb -s /var/tmp/to_scwrl_2119529200.seq -o /var/tmp/from_scwrl_2119529200.pdb > /var/tmp/scwrl_2119529200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2119529200.pdb Number of alignments=1062 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEK 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2cz1A 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2cz1A 157 :IRVYDTTAE T0287 162 :VN 2cz1A 166 :TR T0287 166 :ANLK 2cz1A 170 :VLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=7154 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1184228085.pdb -s /var/tmp/to_scwrl_1184228085.seq -o /var/tmp/from_scwrl_1184228085.pdb > /var/tmp/scwrl_1184228085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184228085.pdb Number of alignments=1063 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKI 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGW T0287 48 :HDFFKQMHTNKGALDKVLRNYM 2cz1A 44 :KKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=7166 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_340093416.pdb -s /var/tmp/to_scwrl_340093416.seq -o /var/tmp/from_scwrl_340093416.pdb > /var/tmp/scwrl_340093416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_340093416.pdb Number of alignments=1064 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 84 :F 2cz1A 116 :A T0287 87 :VYRLLES 2cz1A 119 :ILGLPPT T0287 94 :ETMELL 2cz1A 128 :KSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMT 2cz1A 170 :VLPQ T0287 159 :DEEVNFY 2cz1A 175 :PAGTEGW T0287 170 :TIEQYNDYV 2cz1A 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 13 number of extra gaps= 3 total=7179 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_930984928.pdb -s /var/tmp/to_scwrl_930984928.seq -o /var/tmp/from_scwrl_930984928.pdb > /var/tmp/scwrl_930984928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930984928.pdb Number of alignments=1065 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t06-local-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7180 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-local-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7180 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)E160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)L181 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKK 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEG T0287 47 :MHDFFKQMHTNKGALDKVLRNYM 2cz1A 43 :WKKTFEEDFSPRRGAELVARAWT T0287 70 :KDYRA 2cz1A 67 :PEFRQ T0287 90 :LLESETM 2cz1A 72 :LLLTDGT T0287 101 :AIAENPNFLFSKFDR 2cz1A 79 :AAVAQYGYLGPQGEY T0287 128 :PIMFK 2cz1A 94 :IVAVE T0287 148 :NLPLLKLFV 2cz1A 99 :DTPTLKNVI T0287 159 :D 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NL 2cz1A 119 :IL T0287 169 :KTIEQYNDYVRD 2cz1A 122 :LPPTWYKSFEYR T0287 184 :KFDLEKYMKEKGVQNA 2cz1A 137 :VREPRKVLSEMGTEIA Number of specific fragments extracted= 12 number of extra gaps= 3 total=7192 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1662878120.pdb -s /var/tmp/to_scwrl_1662878120.seq -o /var/tmp/from_scwrl_1662878120.pdb > /var/tmp/scwrl_1662878120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1662878120.pdb Number of alignments=1066 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGVDK 2cz1A 73 :LLTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2cz1A 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NLKTI 2cz1A 119 :ILGLP T0287 172 :EQYN 2cz1A 125 :TWYK T0287 176 :DYV 2cz1A 131 :EYR T0287 183 :M 2cz1A 137 :V T0287 185 :FDLEKYMKEKGVQNA 2cz1A 138 :REPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 3 total=7203 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_600189437.pdb -s /var/tmp/to_scwrl_600189437.seq -o /var/tmp/from_scwrl_600189437.pdb > /var/tmp/scwrl_600189437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_600189437.pdb Number of alignments=1067 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t2k-global-adpstyle1.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNT 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPD T0287 42 :DQIKTMHDFFKQMHTNKGALDKVLRNY 2cz1A 38 :GYVEGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDEEVN 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDTTAE T0287 164 :FYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 171 :LPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 3 total=7211 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1642778046.pdb -s /var/tmp/to_scwrl_1642778046.seq -o /var/tmp/from_scwrl_1642778046.pdb > /var/tmp/scwrl_1642778046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642778046.pdb Number of alignments=1068 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-global-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEK 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYV T0287 45 :KTMHDFFKQMHTNKGALDKVLRNY 2cz1A 41 :EGWKKTFEEDFSPRRGAELVARAW T0287 69 :MKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 74 :LTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 108 :F 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPL 2cz1A 137 :VREPRKVLSEMGTEIAS T0287 152 :LKLFVMTDE 2cz1A 157 :IRVYDTTAE T0287 162 :VN 2cz1A 166 :TR T0287 166 :ANLK 2cz1A 170 :VLPQ T0287 170 :TIEQYNDYVRDLLMKFDLEKYMKEKGV 2cz1A 177 :GTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 11 number of extra gaps= 4 total=7222 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1009143229.pdb -s /var/tmp/to_scwrl_1009143229.seq -o /var/tmp/from_scwrl_1009143229.pdb > /var/tmp/scwrl_1009143229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1009143229.pdb Number of alignments=1069 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 90 :LL 2cz1A 119 :IL T0287 92 :ESETMELL 2cz1A 126 :WYKSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMTDEEVN 2cz1A 170 :VLPQRPAGT T0287 167 :NLKTIEQYNDYV 2cz1A 179 :EGWSQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 11 number of extra gaps= 3 total=7233 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1700736100.pdb -s /var/tmp/to_scwrl_1700736100.seq -o /var/tmp/from_scwrl_1700736100.pdb > /var/tmp/scwrl_1700736100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700736100.pdb Number of alignments=1070 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)K85 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)K86 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 Warning: unaligning (T0287)Q197 because last residue in template chain is (2cz1A)P204 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 84 :F 2cz1A 116 :A T0287 87 :VYRLLES 2cz1A 119 :ILGLPPT T0287 94 :ETMELL 2cz1A 128 :KSFEYR T0287 103 :AENPNFLFSKFDRSI 2cz1A 137 :VREPRKVLSEMGTEI T0287 137 :EMDSQIELYGTNLPLL 2cz1A 152 :ASDIEIRVYDTTAETR T0287 155 :FVMT 2cz1A 170 :VLPQ T0287 159 :DEEVNFY 2cz1A 175 :PAGTEGW T0287 170 :TIEQYNDYV 2cz1A 182 :SQEQLQEIV T0287 179 :RDLLMKFDL 2cz1A 192 :KDCLIGVAI T0287 195 :GV 2cz1A 202 :QV Number of specific fragments extracted= 13 number of extra gaps= 3 total=7246 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1156642227.pdb -s /var/tmp/to_scwrl_1156642227.seq -o /var/tmp/from_scwrl_1156642227.pdb > /var/tmp/scwrl_1156642227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156642227.pdb Number of alignments=1071 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-adpstyle1.a2m # 2cz1A read from T0287-2cz1A-t2k-local-adpstyle1.a2m # found chain 2cz1A in template set T0287 71 :DYRAVIKSIGVDKFKKVY 2cz1A 30 :DGKGLVPDGYVEGWKKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=7247 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-local-adpstyle5.a2m # found chain 2cz1A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7247 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2cz1A in template set T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGV 2cz1A 73 :LLTDGTAAVAQYGY T0287 109 :L 2cz1A 87 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=7251 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1961151874.pdb -s /var/tmp/to_scwrl_1961151874.seq -o /var/tmp/from_scwrl_1961151874.pdb > /var/tmp/scwrl_1961151874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1961151874.pdb Number of alignments=1072 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cz1A read from T0287-2cz1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cz1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)E161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)N163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 T0287 13 :ADSKDKKEKLIESLQENELLNTDEKKKIIDQ 2cz1A 16 :APVSDRAWALFRALDGKGLVPDGYVEGWKKT T0287 44 :IKTMHDFFKQMHTNKGALDK 2cz1A 53 :PRRGAELVARAWTDPEFRQL T0287 68 :YMKDYRAVIKSIGVDK 2cz1A 73 :LLTDGTAAVAQYGYLG T0287 103 :AENPNFLFSKFDRSILGIF 2cz1A 89 :PQGEYIVAVEDTPTLKNVI T0287 124 :F 2cz1A 110 :S T0287 164 :F 2cz1A 116 :A T0287 167 :NLKTI 2cz1A 119 :ILGLP T0287 172 :EQYN 2cz1A 125 :TWYK T0287 176 :DYV 2cz1A 131 :EYR T0287 183 :M 2cz1A 137 :V T0287 185 :FDLEKYMKEKGVQNA 2cz1A 138 :REPRKVLSEMGTEIA Number of specific fragments extracted= 11 number of extra gaps= 3 total=7262 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_797218282.pdb -s /var/tmp/to_scwrl_797218282.seq -o /var/tmp/from_scwrl_797218282.pdb > /var/tmp/scwrl_797218282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797218282.pdb Number of alignments=1073 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cz1A-t04-muscle.a2m.gz # 2cz1A read from T0287-2cz1A-t04-muscle.a2m.gz # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMH 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAE T0287 56 :TNKGALDKVLRNYM 2cz1A 60 :VARAWTDPEFRQLL T0287 70 :KDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 75 :TDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVM 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRV T0287 158 :TDEEVN 2cz1A 162 :TTAETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 9 number of extra gaps= 4 total=7271 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1377178558.pdb -s /var/tmp/to_scwrl_1377178558.seq -o /var/tmp/from_scwrl_1377178558.pdb > /var/tmp/scwrl_1377178558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377178558.pdb Number of alignments=1074 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2cz1A-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2cz1A-t2k-muscle.a2m.gz # 2cz1A read from T0287-2cz1A-t2k-muscle.a2m.gz # found chain 2cz1A in template set Warning: unaligning (T0287)R6 because first residue in template chain is (2cz1A)E9 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)C109 Warning: unaligning (T0287)E104 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)C109 Warning: unaligning (T0287)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cz1A)S113 Warning: unaligning (T0287)S111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)S113 Warning: unaligning (T0287)F113 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cz1A)T115 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)P118 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)P118 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)R135 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)R135 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)V136 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2cz1A)M169 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2cz1A)M169 T0287 7 :KLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 2cz1A 10 :NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW T0287 62 :DKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAI 2cz1A 67 :PEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI T0287 105 :N 2cz1A 110 :S T0287 114 :D 2cz1A 116 :A T0287 117 :ILGIFLPFFSKPIMF 2cz1A 119 :ILGLPPTWYKSFEYR T0287 135 :IREMDSQIELYGTNLPLLKLFVMTDE 2cz1A 137 :VREPRKVLSEMGTEIASDIEIRVYDT T0287 161 :EVN 2cz1A 165 :ETR T0287 166 :ANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2cz1A 170 :VLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV Number of specific fragments extracted= 8 number of extra gaps= 4 total=7279 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_902214649.pdb -s /var/tmp/to_scwrl_902214649.seq -o /var/tmp/from_scwrl_902214649.pdb > /var/tmp/scwrl_902214649.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902214649.pdb Number of alignments=1075 # command:# Prefix for input files set to 2sas/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-fssp-global-adpstyle5.a2m # 2sas read from 2sas-T0287-fssp-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 5 :MRKLFSMIADSK 2sas 10 :IKFTFDFFLDMN T0287 17 :DKKEK 2sas 29 :NDFED T0287 24 :ESL 2sas 36 :TRY T0287 29 :N 2sas 41 :V T0287 32 :LNTDEKKKIIDQI 2sas 46 :LSDADYKSMQASL T0287 47 :MHDFFK 2sas 61 :EWRDLK T0287 53 :QMHTNKGAL 2sas 68 :RADINKDDV T0287 63 :KVLRNYMKDYRAVIKS 2sas 77 :VSWEEYLAMWEKTIAT T0287 84 :FKKVYR 2sas 93 :CKSVAD T0287 98 :LLHAIAENPNFLFSKFDRSILG 2sas 99 :LPAWCQNRIPFLFKGMDVSGDG T0287 122 :LP 2sas 123 :DL T0287 125 :FSKPI 2sas 125 :EEFQN T0287 132 :K 2sas 132 :K T0287 143 :ELYGTNLPLLKLFVMTDEEVNF 2sas 135 :QLQCADVPAVYNVITDGGKVTF T0287 170 :TIEQ 2sas 157 :DLNR T0287 176 :DYVRDLLMKFDLEKYMKEK 2sas 163 :ELYYRLLTSPAADAGNTLM Number of specific fragments extracted= 17 number of extra gaps= 9 total=7296 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_822947005.pdb -s /var/tmp/to_scwrl_822947005.seq -o /var/tmp/from_scwrl_822947005.pdb > /var/tmp/scwrl_822947005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_822947005.pdb Number of alignments=1076 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-fssp-local-adpstyle5.a2m # 2sas read from 2sas-T0287-fssp-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 79 :IGVDKFKKVYRLL 2sas 46 :LSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 6 number of extra gaps= 5 total=7302 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-global-adpstyle1.a2m # 2sas read from 2sas-T0287-t04-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)A13 because first residue in template chain is (2sas)G1 Warning: unaligning (T0287)K16 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)R66 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)N67 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)L187 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)E188 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 14 :DS 2sas 2 :LN T0287 18 :KKEKLIE 2sas 6 :QKQKIKF T0287 25 :SLQENE 2sas 19 :DMNHDG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 47 :M 2sas 41 :V T0287 50 :F 2sas 44 :G T0287 52 :KQMHTNKGALDKVL 2sas 45 :SLSDADYKSMQASL T0287 68 :YMKDYRAVI 2sas 61 :EWRDLKGRA T0287 77 :KSIGVDKFKKVYRLL 2sas 75 :DVVSWEEYLAMWEKT T0287 165 :YANLKTIEQYNDYVRDLLMKF 2sas 90 :IATCKSVADLPAWCQNRIPFL T0287 186 :D 2sas 160 :R T0287 189 :KYMKEKGVQNA 2sas 163 :ELYYRLLTSPA Number of specific fragments extracted= 13 number of extra gaps= 7 total=7315 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1688565.pdb -s /var/tmp/to_scwrl_1688565.seq -o /var/tmp/from_scwrl_1688565.pdb > /var/tmp/scwrl_1688565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688565.pdb Number of alignments=1077 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-global-adpstyle5.a2m # 2sas read from 2sas-T0287-t04-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 T0287 3 :NNMRKLFSMIADSK 2sas 8 :QKIKFTFDFFLDMN T0287 28 :ENE 2sas 22 :HDG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 47 :MHDFFKQMHTNKGAL 2sas 62 :WRDLKGRADINKDDV T0287 79 :IGVDKFKKVYRLL 2sas 77 :VSWEEYLAMWEKT T0287 100 :HAIAENPNFLFSKFDR 2sas 101 :AWCQNRIPFLFKGMDV T0287 157 :MTDEEVNFY 2sas 136 :LQCADVPAV T0287 174 :YNDY 2sas 145 :YNVI T0287 179 :RDL 2sas 149 :TDG T0287 183 :MKFDLE 2sas 152 :GKVTFD T0287 189 :KYMKEK 2sas 163 :ELYYRL T0287 195 :GVQ 2sas 181 :MGQ Number of specific fragments extracted= 13 number of extra gaps= 3 total=7328 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_744712867.pdb -s /var/tmp/to_scwrl_744712867.seq -o /var/tmp/from_scwrl_744712867.pdb > /var/tmp/scwrl_744712867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_744712867.pdb Number of alignments=1078 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-local-adpstyle1.a2m # 2sas read from 2sas-T0287-t04-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)V87 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 80 :GVDKFKK 2sas 27 :QDNDFED T0287 91 :LESETMELLHAIAEN 2sas 44 :GSLSDADYKSMQASL T0287 106 :PNFLFSKFDRSILGI 2sas 62 :WRDLKGRADINKDDV T0287 121 :FLPFFSKP 2sas 82 :YLAMWEKT T0287 165 :YANLKTIEQ 2sas 90 :IATCKSVAD T0287 174 :YNDYVRDLLMKFDLEK 2sas 103 :CQNRIPFLFKGMDVSG Number of specific fragments extracted= 6 number of extra gaps= 1 total=7334 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1403794890.pdb -s /var/tmp/to_scwrl_1403794890.seq -o /var/tmp/from_scwrl_1403794890.pdb > /var/tmp/scwrl_1403794890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1403794890.pdb Number of alignments=1079 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t04-local-adpstyle5.a2m # 2sas read from 2sas-T0287-t04-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)S78 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)V87 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)Y88 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R89 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)L90 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 80 :GVDKFKK 2sas 27 :QDNDFED T0287 91 :LESETMELLHAIAEN 2sas 44 :GSLSDADYKSMQASL T0287 106 :PNFLFSKFDRSILG 2sas 62 :WRDLKGRADINKDD T0287 120 :IFLPFFSKP 2sas 81 :EYLAMWEKT Number of specific fragments extracted= 4 number of extra gaps= 1 total=7338 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_526943510.pdb -s /var/tmp/to_scwrl_526943510.seq -o /var/tmp/from_scwrl_526943510.pdb > /var/tmp/scwrl_526943510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_526943510.pdb Number of alignments=1080 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-global-adpstyle1.a2m # 2sas read from 2sas-T0287-t2k-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)S25 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSNNMRKLFSMIADSKDKK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 27 :QENELLN 2sas 27 :QDNDFED T0287 36 :EKK 2sas 36 :TRY T0287 41 :I 2sas 41 :V T0287 44 :IKTMHDFFKQ 2sas 44 :GSLSDADYKS T0287 54 :MHTN 2sas 55 :QASL T0287 60 :ALDKVLRNYMKDYR 2sas 61 :EWRDLKGRADINKD T0287 77 :KSIGVDKFKKV 2sas 75 :DVVSWEEYLAM T0287 88 :YRLLESETMELLHAIAENPNFLFSKFDRS 2sas 89 :TIATCKSVADLPAWCQNRIPFLFKGMDVS T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :G 2sas 135 :Q T0287 157 :MTDEEVNFYANLKTIEQ 2sas 136 :LQCADVPAVYNVITDGG T0287 174 :YND 2sas 158 :LNR T0287 179 :RDLLMKFDLEKYMKEKGVQNA 2sas 163 :ELYYRLLTSPAADAGNTLMGQ Number of specific fragments extracted= 15 number of extra gaps= 8 total=7353 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1210608725.pdb -s /var/tmp/to_scwrl_1210608725.seq -o /var/tmp/from_scwrl_1210608725.pdb > /var/tmp/scwrl_1210608725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1210608725.pdb Number of alignments=1081 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-global-adpstyle5.a2m # 2sas read from 2sas-T0287-t2k-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)S25 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L26 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K39 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSNNMRKLFSMIADSKDK 2sas 6 :QKQKIKFTFDFFLDMNHD T0287 27 :QENELLN 2sas 27 :QDNDFED T0287 36 :EKK 2sas 36 :TRY T0287 41 :I 2sas 41 :V T0287 44 :IKTMHDFFKQ 2sas 44 :GSLSDADYKS T0287 54 :MHTN 2sas 55 :QASL T0287 60 :ALDKVLRNYMKDYR 2sas 61 :EWRDLKGRADINKD T0287 77 :KSIGVDKFKKVYR 2sas 75 :DVVSWEEYLAMWE T0287 90 :LLESETMELLHAIAENPNFLFSKFDRS 2sas 91 :ATCKSVADLPAWCQNRIPFLFKGMDVS T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :G 2sas 135 :Q T0287 157 :MTDEEVNFYANLK 2sas 136 :LQCADVPAVYNVI T0287 170 :TIEQ 2sas 157 :DLNR T0287 176 :DYVRDLLMK 2sas 163 :ELYYRLLTS T0287 186 :DLEKYMKEKGVQNA 2sas 172 :PAADAGNTLMGQKP Number of specific fragments extracted= 16 number of extra gaps= 7 total=7369 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_541041873.pdb -s /var/tmp/to_scwrl_541041873.seq -o /var/tmp/from_scwrl_541041873.pdb > /var/tmp/scwrl_541041873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541041873.pdb Number of alignments=1082 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-local-adpstyle1.a2m # 2sas read from 2sas-T0287-t2k-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 128 :PIMFKMS 2sas 52 :KSMQASL T0287 137 :EMDSQIELYGTN 2sas 61 :EWRDLKGRADIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=7371 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2sas-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2sas-T0287-t2k-local-adpstyle5.a2m # 2sas read from 2sas-T0287-t2k-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)K70 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 71 :DYRAVIKSIGVDK 2sas 61 :EWRDLKGRADINK T0287 84 :FKKV 2sas 82 :YLAM T0287 88 :YRLLESETMELLHAIAENPNFLFSKFDRS 2sas 89 :TIATCKSVADLPAWCQNRIPFLFKGMDVS Number of specific fragments extracted= 3 number of extra gaps= 0 total=7374 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_41219917.pdb -s /var/tmp/to_scwrl_41219917.seq -o /var/tmp/from_scwrl_41219917.pdb > /var/tmp/scwrl_41219917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_41219917.pdb Number of alignments=1083 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-simplesw-adpstyle1.a2m # 2sas read from T0287-2sas-simplesw-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=7379 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-simplesw-adpstyle5.a2m # 2sas read from T0287-2sas-simplesw-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHA 2sas 61 :EWRDLKGR Number of specific fragments extracted= 6 number of extra gaps= 5 total=7385 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-adpstyle1.a2m # 2sas read from T0287-2sas-t04-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSKFD 2sas 61 :EWRDLKGRADINKDDVVSWEE T0287 121 :FLPFFSKPIMFKMSIREM 2sas 82 :YLAMWEKTIATCKSVADL T0287 139 :DSQIELYGTNLPLLKLF 2sas 104 :QNRIPFLFKGMDVSGDG T0287 158 :TDEEVNF 2sas 123 :DLEEFQN T0287 167 :N 2sas 132 :K T0287 170 :TIE 2sas 135 :QLQ T0287 173 :QYNDYVRDLLMKFDLEK 2sas 144 :VYNVITDGGKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 15 number of extra gaps= 10 total=7400 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1739159437.pdb -s /var/tmp/to_scwrl_1739159437.seq -o /var/tmp/from_scwrl_1739159437.pdb > /var/tmp/scwrl_1739159437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739159437.pdb Number of alignments=1084 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-adpstyle5.a2m # 2sas read from T0287-2sas-t04-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMSIREMDS 2sas 79 :WEEYLAMWEKTIATCKSVADLPA T0287 141 :QIELYGTNLPLLKL 2sas 106 :RIPFLFKGMDVSGD T0287 157 :MTDEEVN 2sas 123 :DLEEFQN T0287 166 :A 2sas 132 :K T0287 169 :K 2sas 135 :Q T0287 170 :TI 2sas 140 :DV T0287 172 :EQYNDYVRDLLMKFDLEK 2sas 143 :AVYNVITDGGKVTFDLNR T0287 192 :KEK 2sas 163 :ELY Number of specific fragments extracted= 16 number of extra gaps= 10 total=7416 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1478970376.pdb -s /var/tmp/to_scwrl_1478970376.seq -o /var/tmp/from_scwrl_1478970376.pdb > /var/tmp/scwrl_1478970376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478970376.pdb Number of alignments=1085 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSK 2sas 61 :EWRDLKGRADINKDDVVSW T0287 113 :FDRSILGI 2sas 86 :WEKTIATC T0287 122 :LPFF 2sas 99 :LPAW T0287 128 :PIMFKMSIREMDS 2sas 108 :PFLFKGMDVSGDG T0287 143 :EL 2sas 123 :DL T0287 147 :T 2sas 132 :K T0287 150 :PL 2sas 135 :QL T0287 167 :NLKTIEQYNDYVRD 2sas 137 :QCADVPAVYNVITD T0287 181 :LLMKFDLEK 2sas 152 :GKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 18 number of extra gaps= 10 total=7434 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_813496844.pdb -s /var/tmp/to_scwrl_813496844.seq -o /var/tmp/from_scwrl_813496844.pdb > /var/tmp/scwrl_813496844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_813496844.pdb Number of alignments=1086 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 8 :LFSMIAD 2sas 13 :TFDFFLD T0287 15 :SKDKKEK 2sas 27 :QDNDFED T0287 24 :ESL 2sas 36 :TRY T0287 30 :ELLNTDEKKKIIDQI 2sas 44 :GSLSDADYKSMQASL T0287 47 :MHDFF 2sas 61 :EWRDL T0287 52 :KQMHTNKGA 2sas 67 :GRADINKDD T0287 65 :LRNYMKDYRAVIKSIG 2sas 79 :WEEYLAMWEKTIATCK T0287 81 :VDKFKKVYRLLESET 2sas 100 :PAWCQNRIPFLFKGM T0287 96 :MELLHA 2sas 124 :LEEFQN T0287 104 :E 2sas 132 :K T0287 107 :NFLFSKFDRSILGIF 2sas 135 :QLQCADVPAVYNVIT T0287 158 :TDEEVNFY 2sas 150 :DGGKVTFD T0287 171 :IEQ 2sas 158 :LNR T0287 176 :DYVRDLLMKFD 2sas 163 :ELYYRLLTSPA T0287 196 :VQNA 2sas 182 :GQKP Number of specific fragments extracted= 17 number of extra gaps= 8 total=7451 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_67499278.pdb -s /var/tmp/to_scwrl_67499278.seq -o /var/tmp/from_scwrl_67499278.pdb > /var/tmp/scwrl_67499278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_67499278.pdb Number of alignments=1087 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-adpstyle1.a2m # 2sas read from T0287-2sas-t04-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=7456 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-adpstyle5.a2m # 2sas read from T0287-2sas-t04-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMS 2sas 79 :WEEYLAMWEKTIATCKS Number of specific fragments extracted= 7 number of extra gaps= 5 total=7463 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1720334744.pdb -s /var/tmp/to_scwrl_1720334744.seq -o /var/tmp/from_scwrl_1720334744.pdb > /var/tmp/scwrl_1720334744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1720334744.pdb Number of alignments=1088 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 5 total=7470 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2017538456.pdb -s /var/tmp/to_scwrl_2017538456.seq -o /var/tmp/from_scwrl_2017538456.pdb > /var/tmp/scwrl_2017538456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2017538456.pdb Number of alignments=1089 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 37 :K 2sas 6 :Q T0287 41 :IDQIKTMHDFFKQMHTNK 2sas 7 :KQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 6 total=7477 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-adpstyle1.a2m # 2sas read from T0287-2sas-t06-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSKFD 2sas 61 :EWRDLKGRADINKDDVVSWEE T0287 121 :FLPFFSKPIMFKMSIREM 2sas 82 :YLAMWEKTIATCKSVADL T0287 139 :DSQIELYGTNLPLLKLF 2sas 104 :QNRIPFLFKGMDVSGDG T0287 158 :TDEEVNF 2sas 123 :DLEEFQN T0287 167 :N 2sas 132 :K T0287 170 :TIE 2sas 135 :QLQ T0287 173 :QYNDYVRDLLMKFDLEK 2sas 144 :VYNVITDGGKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 15 number of extra gaps= 10 total=7492 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1329400560.pdb -s /var/tmp/to_scwrl_1329400560.seq -o /var/tmp/from_scwrl_1329400560.pdb > /var/tmp/scwrl_1329400560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329400560.pdb Number of alignments=1090 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-adpstyle5.a2m # 2sas read from T0287-2sas-t06-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMSIREMDS 2sas 79 :WEEYLAMWEKTIATCKSVADLPA T0287 141 :QIELYGTNLPLLKL 2sas 106 :RIPFLFKGMDVSGD T0287 157 :MTDEEVN 2sas 123 :DLEEFQN T0287 166 :A 2sas 132 :K T0287 169 :K 2sas 135 :Q T0287 170 :TI 2sas 140 :DV T0287 172 :EQYNDYVRDLLMKFDLEK 2sas 143 :AVYNVITDGGKVTFDLNR T0287 192 :KEK 2sas 163 :ELY Number of specific fragments extracted= 16 number of extra gaps= 10 total=7508 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1244569116.pdb -s /var/tmp/to_scwrl_1244569116.seq -o /var/tmp/from_scwrl_1244569116.pdb > /var/tmp/scwrl_1244569116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244569116.pdb Number of alignments=1091 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSK 2sas 61 :EWRDLKGRADINKDDVVSW T0287 113 :FDRSILGI 2sas 86 :WEKTIATC T0287 122 :LPFF 2sas 99 :LPAW T0287 128 :PIMFKMSIREMDS 2sas 108 :PFLFKGMDVSGDG T0287 143 :EL 2sas 123 :DL T0287 147 :T 2sas 132 :K T0287 150 :PL 2sas 135 :QL T0287 167 :NLKTIEQYNDYVRD 2sas 137 :QCADVPAVYNVITD T0287 181 :LLMKFDLEK 2sas 152 :GKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 18 number of extra gaps= 10 total=7526 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1179037738.pdb -s /var/tmp/to_scwrl_1179037738.seq -o /var/tmp/from_scwrl_1179037738.pdb > /var/tmp/scwrl_1179037738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1179037738.pdb Number of alignments=1092 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 8 :LFSMIAD 2sas 13 :TFDFFLD T0287 15 :SKDKKEK 2sas 27 :QDNDFED T0287 24 :ESL 2sas 36 :TRY T0287 30 :ELLNTDEKKKIIDQI 2sas 44 :GSLSDADYKSMQASL T0287 47 :MHDFF 2sas 61 :EWRDL T0287 52 :KQMHTNKGA 2sas 67 :GRADINKDD T0287 65 :LRNYMKDYRAVIKSIG 2sas 79 :WEEYLAMWEKTIATCK T0287 81 :VDKFKKVYRLLESET 2sas 100 :PAWCQNRIPFLFKGM T0287 96 :MELLHA 2sas 124 :LEEFQN T0287 104 :E 2sas 132 :K T0287 107 :NFLFSKFDRSILGIF 2sas 135 :QLQCADVPAVYNVIT T0287 158 :TDEEVNFY 2sas 150 :DGGKVTFD T0287 171 :IEQ 2sas 158 :LNR T0287 176 :DYVRDLLMKFD 2sas 163 :ELYYRLLTSPA T0287 196 :VQNA 2sas 182 :GQKP Number of specific fragments extracted= 17 number of extra gaps= 8 total=7543 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1301446114.pdb -s /var/tmp/to_scwrl_1301446114.seq -o /var/tmp/from_scwrl_1301446114.pdb > /var/tmp/scwrl_1301446114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1301446114.pdb Number of alignments=1093 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-adpstyle1.a2m # 2sas read from T0287-2sas-t06-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=7548 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-adpstyle5.a2m # 2sas read from T0287-2sas-t06-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMS 2sas 79 :WEEYLAMWEKTIATCKS Number of specific fragments extracted= 7 number of extra gaps= 5 total=7555 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_281313555.pdb -s /var/tmp/to_scwrl_281313555.seq -o /var/tmp/from_scwrl_281313555.pdb > /var/tmp/scwrl_281313555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_281313555.pdb Number of alignments=1094 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 5 total=7562 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1519131154.pdb -s /var/tmp/to_scwrl_1519131154.seq -o /var/tmp/from_scwrl_1519131154.pdb > /var/tmp/scwrl_1519131154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1519131154.pdb Number of alignments=1095 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 37 :K 2sas 6 :Q T0287 41 :IDQIKTMHDFFKQMHTNK 2sas 7 :KQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 6 total=7569 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-adpstyle1.a2m # 2sas read from T0287-2sas-t2k-global-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSKFD 2sas 61 :EWRDLKGRADINKDDVVSWEE T0287 121 :FLPFFSKPIMFKMSIREM 2sas 82 :YLAMWEKTIATCKSVADL T0287 139 :DSQIELYGTNLPLLKLF 2sas 104 :QNRIPFLFKGMDVSGDG T0287 158 :TDEEVNF 2sas 123 :DLEEFQN T0287 167 :N 2sas 132 :K T0287 170 :TIE 2sas 135 :QLQ T0287 173 :QYNDYVRDLLMKFDLEK 2sas 144 :VYNVITDGGKVTFDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 15 number of extra gaps= 10 total=7584 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_84947395.pdb -s /var/tmp/to_scwrl_84947395.seq -o /var/tmp/from_scwrl_84947395.pdb > /var/tmp/scwrl_84947395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_84947395.pdb Number of alignments=1096 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-global-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 42 :DQIKTMHDFFKQMHTNK 2sas 8 :QKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMSIREMDS 2sas 79 :WEEYLAMWEKTIATCKSVADLPA T0287 141 :QIELYGTNLPLLKL 2sas 106 :RIPFLFKGMDVSGD T0287 157 :MTDEEVN 2sas 123 :DLEEFQN T0287 166 :A 2sas 132 :K T0287 169 :K 2sas 135 :Q T0287 170 :TI 2sas 140 :DV T0287 172 :EQYNDYVRDLLMKFDLEK 2sas 143 :AVYNVITDGGKVTFDLNR T0287 192 :KEK 2sas 163 :ELY Number of specific fragments extracted= 16 number of extra gaps= 10 total=7600 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1944191676.pdb -s /var/tmp/to_scwrl_1944191676.seq -o /var/tmp/from_scwrl_1944191676.pdb > /var/tmp/scwrl_1944191676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1944191676.pdb Number of alignments=1097 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y190 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)M191 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RKL 2sas 6 :QKQ T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFSK 2sas 61 :EWRDLKGRADINKDDVVSW T0287 113 :FDRSIL 2sas 86 :WEKTIA T0287 131 :FKMSIREMDSQ 2sas 92 :TCKSVADLPAW T0287 142 :IELYGTN 2sas 114 :MDVSGDG T0287 151 :LL 2sas 123 :DL T0287 160 :EE 2sas 125 :EE T0287 162 :VN 2sas 128 :QN T0287 166 :A 2sas 132 :K T0287 169 :KTIEQYNDYVRDLLMK 2sas 135 :QLQCADVPAVYNVITD T0287 185 :FDLEK 2sas 156 :FDLNR T0287 192 :K 2sas 163 :E Number of specific fragments extracted= 18 number of extra gaps= 10 total=7618 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2119320591.pdb -s /var/tmp/to_scwrl_2119320591.seq -o /var/tmp/from_scwrl_2119320591.pdb > /var/tmp/scwrl_2119320591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2119320591.pdb Number of alignments=1098 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)L22 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I23 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)N29 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)I102 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)A103 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)N105 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSN 2sas 1 :GLN T0287 6 :RK 2sas 6 :QK T0287 8 :LFSMIAD 2sas 13 :TFDFFLD T0287 15 :SKDKKEK 2sas 27 :QDNDFED T0287 24 :ESL 2sas 36 :TRY T0287 30 :ELLNTDEKKKIIDQI 2sas 44 :GSLSDADYKSMQASL T0287 47 :MHDFF 2sas 61 :EWRDL T0287 52 :KQMHTNKGA 2sas 67 :GRADINKDD T0287 65 :LRNYMKDYRAVIKSIG 2sas 79 :WEEYLAMWEKTIATCK T0287 81 :VDKFKKVYRLLESET 2sas 100 :PAWCQNRIPFLFKGM T0287 96 :MELLHA 2sas 124 :LEEFQN T0287 104 :E 2sas 132 :K T0287 107 :NFLFSKFDRSILGIF 2sas 135 :QLQCADVPAVYNVIT T0287 158 :TDEEVNFY 2sas 150 :DGGKVTFD T0287 171 :IEQ 2sas 158 :LNR T0287 176 :DYVRDLLMKFD 2sas 163 :ELYYRLLTSPA T0287 196 :VQNA 2sas 182 :GQKP Number of specific fragments extracted= 17 number of extra gaps= 8 total=7635 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1727725442.pdb -s /var/tmp/to_scwrl_1727725442.seq -o /var/tmp/from_scwrl_1727725442.pdb > /var/tmp/scwrl_1727725442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1727725442.pdb Number of alignments=1099 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-adpstyle1.a2m # 2sas read from T0287-2sas-t2k-local-adpstyle1.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :S 2sas 44 :G Number of specific fragments extracted= 5 number of extra gaps= 4 total=7640 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-local-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 43 :QIKTMHDFFKQMHTNK 2sas 9 :KIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS T0287 118 :LGIFLPFFSKPIMFKMS 2sas 79 :WEEYLAMWEKTIATCKS Number of specific fragments extracted= 7 number of extra gaps= 5 total=7647 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_805851258.pdb -s /var/tmp/to_scwrl_805851258.seq -o /var/tmp/from_scwrl_805851258.pdb > /var/tmp/scwrl_805851258.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805851258.pdb Number of alignments=1100 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 40 :IIDQIKTMHDFFKQMHTNK 2sas 6 :QKQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVD 2sas 44 :GSLSD T0287 83 :KFKKVYRLL 2sas 50 :DYKSMQASL T0287 94 :ETMELLHAIAENPNFLF 2sas 61 :EWRDLKGRADINKDDVV Number of specific fragments extracted= 7 number of extra gaps= 5 total=7654 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1672573045.pdb -s /var/tmp/to_scwrl_1672573045.seq -o /var/tmp/from_scwrl_1672573045.pdb > /var/tmp/scwrl_1672573045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1672573045.pdb Number of alignments=1101 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2sas-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2sas read from T0287-2sas-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2sas in template set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F5 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F5 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)A60 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)M69 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)R73 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)A74 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)I76 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)K77 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)S93 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 T0287 37 :K 2sas 6 :Q T0287 41 :IDQIKTMHDFFKQMHTNK 2sas 7 :KQKIKFTFDFFLDMNHDG T0287 61 :LDKVLRN 2sas 27 :QDNDFED T0287 70 :KDY 2sas 36 :TRY T0287 75 :V 2sas 41 :V T0287 78 :SIGVDKFKKVYRLL 2sas 45 :SLSDADYKSMQASL T0287 94 :ETMELLHAIAENPNFLFS 2sas 61 :EWRDLKGRADINKDDVVS Number of specific fragments extracted= 7 number of extra gaps= 6 total=7661 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2sas-t04-muscle.a2m.gz # 2sas read from T0287-2sas-t04-muscle.a2m.gz # found chain 2sas in template set Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)T46 because of BadResidue code BAD_PEPTIDE at template residue (2sas)E40 Warning: unaligning (T0287)H48 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K43 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K43 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 Warning: unaligning (T0287)N198 because last residue in template chain is (2sas)P185 T0287 1 :MSNNMRKLFSMIADSKD 2sas 6 :QKQKIKFTFDFFLDMNH T0287 29 :NE 2sas 23 :DG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 47 :M 2sas 41 :V T0287 50 :FFKQMHTNKGA 2sas 44 :GSLSDADYKSM T0287 61 :LDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 2sas 62 :WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :GTNLPLLKLFVMTDEEVNFY 2sas 135 :QLQCADVPAVYNVITDGGKV T0287 170 :TIE 2sas 155 :TFD T0287 173 :Q 2sas 160 :R T0287 176 :DYVRDLLMKFDLEKYMKEKGVQ 2sas 163 :ELYYRLLTSPAADAGNTLMGQK Number of specific fragments extracted= 13 number of extra gaps= 8 total=7674 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_736884023.pdb -s /var/tmp/to_scwrl_736884023.seq -o /var/tmp/from_scwrl_736884023.pdb > /var/tmp/scwrl_736884023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736884023.pdb Number of alignments=1102 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2sas-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2sas-t2k-muscle.a2m.gz # 2sas read from T0287-2sas-t2k-muscle.a2m.gz # found chain 2sas in template set Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)I26 Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE at template residue (2sas)I26 Warning: unaligning (T0287)I40 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)M35 Warning: unaligning (T0287)I41 because of BadResidue code BAD_PEPTIDE at template residue (2sas)M35 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)E40 Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)D60 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (2sas)D60 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)V122 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (2sas)V122 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)C131 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (2sas)C131 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)F134 Warning: unaligning (T0287)Y145 because of BadResidue code BAD_PEPTIDE at template residue (2sas)F134 Warning: unaligning (T0287)Y177 because of BadResidue code BAD_PEPTIDE in next template residue (2sas)K162 Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (2sas)K162 T0287 1 :MSNNMRKLFSMIADSKD 2sas 6 :QKQKIKFTFDFFLDMNH T0287 29 :NE 2sas 23 :DG T0287 33 :NTDEKKK 2sas 27 :QDNDFED T0287 42 :DQI 2sas 36 :TRY T0287 46 :TMHDFFKQMHTN 2sas 47 :SDADYKSMQASL T0287 60 :ALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILG 2sas 61 :EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG T0287 134 :SIREMDS 2sas 123 :DLEEFQN T0287 143 :E 2sas 132 :K T0287 146 :GTNLPLLKLFVMTDE 2sas 135 :QLQCADVPAVYNVIT T0287 166 :ANLKTIEQYND 2sas 150 :DGGKVTFDLNR T0287 179 :RDLLMKFDLEKYMKEKGVQNA 2sas 163 :ELYYRLLTSPAADAGNTLMGQ Number of specific fragments extracted= 11 number of extra gaps= 8 total=7685 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_619519486.pdb -s /var/tmp/to_scwrl_619519486.seq -o /var/tmp/from_scwrl_619519486.pdb > /var/tmp/scwrl_619519486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_619519486.pdb Number of alignments=1103 # command:# Prefix for input files set to 2trcP/ # command:# reading script from file read-alignments-scwrl.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b9yC-T0287-fssp-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b9yC-T0287-fssp-global-adpstyle5.a2m # 2trcP read from 1b9yC-T0287-fssp-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)L26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 11 :MIADSKDKKE 2trcP 87 :EGCLRKYRRQ T0287 27 :QE 2trcP 103 :QK T0287 84 :FKKVYRLLESETMELLHAIAENPNFLFSKFDRS 2trcP 111 :YGFVYELETGEQFLETIEKEQKVTTIVVNIYED T0287 119 :GIFLPFF 2trcP 149 :DALNSSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYK T0287 158 :TDEEVN 2trcP 194 :GGELIS T0287 171 :IEQYND 2trcP 202 :ISVAEQ T0287 178 :VRDLLMKFDLEKYMKEKGVQN 2trcP 208 :FAEDFFAADVESFLNEYGLLP Number of specific fragments extracted= 8 number of extra gaps= 0 total=7693 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_322307680.pdb -s /var/tmp/to_scwrl_322307680.seq -o /var/tmp/from_scwrl_322307680.pdb > /var/tmp/scwrl_322307680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322307680.pdb Number of alignments=1104 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b9yC-T0287-fssp-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 1b9yC-T0287-fssp-local-adpstyle5.a2m # 2trcP read from 1b9yC-T0287-fssp-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 58 :KGALDKVLRN 2trcP 87 :EGCLRKYRRQ T0287 74 :AVIKSIGV 2trcP 103 :QKLSFGPR T0287 84 :FKKVYRLLESETMELLHAIAENPNFLFSKFDRS 2trcP 111 :YGFVYELETGEQFLETIEKEQKVTTIVVNIYED T0287 119 :GIFLPFF 2trcP 149 :DALNSSL T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYAN 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISV Number of specific fragments extracted= 5 number of extra gaps= 0 total=7698 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2114062581.pdb -s /var/tmp/to_scwrl_2114062581.seq -o /var/tmp/from_scwrl_2114062581.pdb > /var/tmp/scwrl_2114062581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2114062581.pdb Number of alignments=1105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-global-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t04-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)S10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)D14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)I40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)D42 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)I76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 Warning: unaligning (T0287)V196 because last residue in template chain is (2trcP)R230 T0287 1 :MSNNMRKLF 2trcP 58 :SRDDKDSKE T0287 13 :A 2trcP 70 :R T0287 17 :DKKEKLIESLQENELLNTDEKKK 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 46 :TMHDFFKQMHTNKG 2trcP 119 :TGEQFLETIEKEQK T0287 60 :ALDKVLRNYMKDY 2trcP 150 :ALNSSLECLAAEY T0287 77 :KSIGVDK 2trcP 166 :KFCKIRA T0287 136 :REMD 2trcP 173 :SNTG T0287 141 :QIELYGTN 2trcP 177 :AGDRFSSD T0287 149 :LPLLKLF 2trcP 186 :LPTLLVY T0287 157 :MTDEEVNFYANLKTIEQ 2trcP 193 :KGGELISNFISVAEQFA T0287 175 :NDYVRDLLMKF 2trcP 210 :EDFFAADVESF T0287 187 :LEKYMKEKG 2trcP 221 :LNEYGLLPE Number of specific fragments extracted= 12 number of extra gaps= 0 total=7710 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1521734134.pdb -s /var/tmp/to_scwrl_1521734134.seq -o /var/tmp/from_scwrl_1521734134.pdb > /var/tmp/scwrl_1521734134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1521734134.pdb Number of alignments=1106 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-global-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t04-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 10 :SMIADSKDKKEKLIESL 2trcP 21 :GPKGVINDWRKFKLESE T0287 29 :NELLN 2trcP 40 :DSIPP T0287 36 :EKKKIIDQI 2trcP 45 :SKKEILRQM T0287 45 :KTM 2trcP 75 :QEY T0287 49 :DFFKQMHTNKGALDKVLRN 2trcP 78 :ELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 77 :KSIGVDK 2trcP 166 :KFCKIRA T0287 136 :REMD 2trcP 173 :SNTG T0287 141 :QIELYGT 2trcP 177 :AGDRFSS T0287 148 :NLPLLKLF 2trcP 185 :VLPTLLVY T0287 157 :MTDEEVNFYANLKTIEQ 2trcP 193 :KGGELISNFISVAEQFA T0287 175 :ND 2trcP 210 :ED T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL Number of specific fragments extracted= 13 number of extra gaps= 1 total=7723 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1145254684.pdb -s /var/tmp/to_scwrl_1145254684.seq -o /var/tmp/from_scwrl_1145254684.pdb > /var/tmp/scwrl_1145254684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1145254684.pdb Number of alignments=1107 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-local-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t04-local-adpstyle1.a2m # found chain 2trcP in template set T0287 147 :TNLPLLKLF 2trcP 184 :DVLPTLLVY T0287 157 :MTDEEVNFYANLKT 2trcP 193 :KGGELISNFISVAE T0287 171 :IEQYNDYVRDLLM 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 3 number of extra gaps= 0 total=7726 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2115751146.pdb -s /var/tmp/to_scwrl_2115751146.seq -o /var/tmp/from_scwrl_2115751146.pdb > /var/tmp/scwrl_2115751146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2115751146.pdb Number of alignments=1108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t04-local-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t04-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)I76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 49 :DFFKQMHTNKGALDKVLRN 2trcP 78 :ELIHQDKEDEGCLRKYRRQ T0287 77 :KSIGVDKF 2trcP 103 :QKLSFGPR T0287 85 :KKVYRLLESE 2trcP 112 :GFVYELETGE T0287 97 :ELLHAIAEN 2trcP 122 :QFLETIEKE T0287 109 :LFSKFDR 2trcP 166 :KFCKIRA T0287 136 :REMD 2trcP 173 :SNTG T0287 141 :QIELYGT 2trcP 177 :AGDRFSS T0287 148 :NLPLLKLF 2trcP 185 :VLPTLLVY T0287 157 :MTDEEVNFYANLKT 2trcP 193 :KGGELISNFISVAE T0287 171 :IEQYNDYVRDLL 2trcP 214 :AADVESFLNEYG Number of specific fragments extracted= 10 number of extra gaps= 0 total=7736 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_118963354.pdb -s /var/tmp/to_scwrl_118963354.seq -o /var/tmp/from_scwrl_118963354.pdb > /var/tmp/scwrl_118963354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_118963354.pdb Number of alignments=1109 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-global-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t2k-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)M11 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLF 2trcP 29 :WRKFKLESE T0287 12 :IADSKDKKEKLIESLQENELLNTDEKK 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 43 :QIKTMHDFFKQMHTNKG 2trcP 116 :ELETGEQFLETIEKEQK T0287 94 :ETMELLHAIA 2trcP 133 :VTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANLKTIE 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFA T0287 180 :DLLMKFDLEKYMKEKGVQNA 2trcP 210 :EDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 8 number of extra gaps= 1 total=7744 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_401565929.pdb -s /var/tmp/to_scwrl_401565929.seq -o /var/tmp/from_scwrl_401565929.pdb > /var/tmp/scwrl_401565929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_401565929.pdb Number of alignments=1110 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-global-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t2k-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)S10 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)M11 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLF 2trcP 29 :WRKFKLESE T0287 12 :IADSKDKKEKLIESLQENELLNTDEKK 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :T 2trcP 74 :I T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 80 :GVDKFKKVYRLLESETMELLHAIA 2trcP 119 :TGEQFLETIEKEQKVTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVM 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKG T0287 159 :DEEVNFYANLKT 2trcP 195 :GELISNFISVAE T0287 171 :IE 2trcP 208 :FA T0287 180 :DLLMKFDLEKYMKEKGVQNA 2trcP 210 :EDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 12 number of extra gaps= 1 total=7756 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_495211009.pdb -s /var/tmp/to_scwrl_495211009.seq -o /var/tmp/from_scwrl_495211009.pdb > /var/tmp/scwrl_495211009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_495211009.pdb Number of alignments=1111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-local-adpstyle1.a2m # 2trcP read from 2trcP-T0287-t2k-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)I76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 60 :ALDKVLRNYMKDY 2trcP 150 :ALNSSLECLAAEY T0287 77 :KSIGVD 2trcP 166 :KFCKIR Number of specific fragments extracted= 2 number of extra gaps= 0 total=7758 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1329572080.pdb -s /var/tmp/to_scwrl_1329572080.seq -o /var/tmp/from_scwrl_1329572080.pdb > /var/tmp/scwrl_1329572080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329572080.pdb Number of alignments=1112 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2trcP-T0287-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from 2trcP-T0287-t2k-local-adpstyle5.a2m # 2trcP read from 2trcP-T0287-t2k-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 T0287 43 :QIKTMHDFFKQMHTNKG 2trcP 116 :ELETGEQFLETIEKEQK T0287 60 :ALDKVLRNYMKDY 2trcP 150 :ALNSSLECLAAEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=7760 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_942607802.pdb -s /var/tmp/to_scwrl_942607802.seq -o /var/tmp/from_scwrl_942607802.pdb > /var/tmp/scwrl_942607802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942607802.pdb Number of alignments=1113 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-simplesw-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-simplesw-adpstyle1.a2m # 2trcP read from T0287-2trcP-simplesw-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7761 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_536430926.pdb -s /var/tmp/to_scwrl_536430926.seq -o /var/tmp/from_scwrl_536430926.pdb > /var/tmp/scwrl_536430926.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536430926.pdb Number of alignments=1114 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-simplesw-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-simplesw-adpstyle5.a2m # 2trcP read from T0287-2trcP-simplesw-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL Number of specific fragments extracted= 5 number of extra gaps= 0 total=7766 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_921247871.pdb -s /var/tmp/to_scwrl_921247871.seq -o /var/tmp/from_scwrl_921247871.pdb > /var/tmp/scwrl_921247871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921247871.pdb Number of alignments=1115 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-adpstyle1.a2m # 2trcP read from T0287-2trcP-t04-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)M130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKLFSMIA 2trcP 27 :NDWRKFKLESE T0287 16 :K 2trcP 40 :D T0287 17 :DKKEKLIESLQENELLNTDEKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TM 2trcP 74 :IQ T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 81 :VDKFKKVYRLLESET 2trcP 108 :GPRYGFVYELETGEQ T0287 96 :MELLHAIAENPNFLFSKFDRSILG 2trcP 124 :LETIEKEQKVTTIVVNIYEDGVRG T0287 120 :IFLPFFSK 2trcP 155 :LECLAAEY T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKG 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYG T0287 196 :VQNA 2trcP 227 :LPER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7780 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_274094531.pdb -s /var/tmp/to_scwrl_274094531.seq -o /var/tmp/from_scwrl_274094531.pdb > /var/tmp/scwrl_274094531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_274094531.pdb Number of alignments=1116 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)L152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKL 2trcP 27 :NDWRKF T0287 9 :FSM 2trcP 35 :ESE T0287 14 :DSKD 2trcP 40 :DSIP T0287 18 :KKEKLIESLQENELLNTDEKK 2trcP 46 :KKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TMHDFFKQMHTNKGALDKVLRN 2trcP 75 :QEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLESETM 2trcP 109 :PRYGFVYELETGEQF T0287 99 :LHAIAEN 2trcP 124 :LETIEKE T0287 115 :RSILGIFLPFFSKPI 2trcP 131 :QKVTTIVVNIYEDGV T0287 133 :MSIREMDSQIELYGTNL 2trcP 146 :RGCDALNSSLECLAAEY T0287 153 :KLFVMTDEEVN 2trcP 166 :KFCKIRASNTG T0287 164 :FYANLKTIEQY 2trcP 191 :VYKGGELISNF T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQ 2trcP 205 :AEQFAEDFFAADVESFLNEYGLL T0287 198 :NA 2trcP 229 :ER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7797 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1349927769.pdb -s /var/tmp/to_scwrl_1349927769.seq -o /var/tmp/from_scwrl_1349927769.pdb > /var/tmp/scwrl_1349927769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349927769.pdb Number of alignments=1117 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)I40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSN 2trcP 14 :EGQ T0287 4 :NMRKLFSMIA 2trcP 28 :DWRKFKLESE T0287 16 :KD 2trcP 40 :DS T0287 18 :KKEKLIESLQENELLNTDEKKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV T0287 109 :LFSKFDR 2trcP 140 :IYEDGVR T0287 116 :SILGIFLPFF 2trcP 153 :SSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVA T0287 172 :EQYND 2trcP 206 :EQFAE T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7811 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_988747149.pdb -s /var/tmp/to_scwrl_988747149.seq -o /var/tmp/from_scwrl_988747149.pdb > /var/tmp/scwrl_988747149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_988747149.pdb Number of alignments=1118 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNM 2trcP 14 :EGQAT T0287 16 :KDKKEKLIESLQENEL 2trcP 19 :HTGPKGVINDWRKFKL T0287 33 :NTDEKK 2trcP 61 :DKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 13 number of extra gaps= 0 total=7824 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1994429276.pdb -s /var/tmp/to_scwrl_1994429276.seq -o /var/tmp/from_scwrl_1994429276.pdb > /var/tmp/scwrl_1994429276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994429276.pdb Number of alignments=1119 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-adpstyle1.a2m # 2trcP read from T0287-2trcP-t04-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7825 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1219982578.pdb -s /var/tmp/to_scwrl_1219982578.seq -o /var/tmp/from_scwrl_1219982578.pdb > /var/tmp/scwrl_1219982578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219982578.pdb Number of alignments=1120 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLES 2trcP 109 :PRYGFVYELETG Number of specific fragments extracted= 7 number of extra gaps= 0 total=7832 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_170664063.pdb -s /var/tmp/to_scwrl_170664063.seq -o /var/tmp/from_scwrl_170664063.pdb > /var/tmp/scwrl_170664063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_170664063.pdb Number of alignments=1121 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=7839 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1091514745.pdb -s /var/tmp/to_scwrl_1091514745.seq -o /var/tmp/from_scwrl_1091514745.pdb > /var/tmp/scwrl_1091514745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1091514745.pdb Number of alignments=1122 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 9 number of extra gaps= 0 total=7848 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_251536670.pdb -s /var/tmp/to_scwrl_251536670.seq -o /var/tmp/from_scwrl_251536670.pdb > /var/tmp/scwrl_251536670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_251536670.pdb Number of alignments=1123 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-adpstyle1.a2m # 2trcP read from T0287-2trcP-t06-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)M130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKLFSMIA 2trcP 27 :NDWRKFKLESE T0287 16 :K 2trcP 40 :D T0287 17 :DKKEKLIESLQENELLNTDEKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TM 2trcP 74 :IQ T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 81 :VDKFKKVYRLLESET 2trcP 108 :GPRYGFVYELETGEQ T0287 96 :MELLHAIAENPNFLFSKFDRSILG 2trcP 124 :LETIEKEQKVTTIVVNIYEDGVRG T0287 120 :IFLPFFSK 2trcP 155 :LECLAAEY T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKG 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYG T0287 196 :VQNA 2trcP 227 :LPER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7862 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1472110177.pdb -s /var/tmp/to_scwrl_1472110177.seq -o /var/tmp/from_scwrl_1472110177.pdb > /var/tmp/scwrl_1472110177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472110177.pdb Number of alignments=1124 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)L152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKL 2trcP 27 :NDWRKF T0287 9 :FSM 2trcP 35 :ESE T0287 14 :DSKD 2trcP 40 :DSIP T0287 18 :KKEKLIESLQENELLNTDEKK 2trcP 46 :KKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TMHDFFKQMHTNKGALDKVLRN 2trcP 75 :QEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLESETM 2trcP 109 :PRYGFVYELETGEQF T0287 99 :LHAIAEN 2trcP 124 :LETIEKE T0287 115 :RSILGIFLPFFSKPI 2trcP 131 :QKVTTIVVNIYEDGV T0287 133 :MSIREMDSQIELYGTNL 2trcP 146 :RGCDALNSSLECLAAEY T0287 153 :KLFVMTDEEVN 2trcP 166 :KFCKIRASNTG T0287 164 :FYANLKTIEQY 2trcP 191 :VYKGGELISNF T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQ 2trcP 205 :AEQFAEDFFAADVESFLNEYGLL T0287 198 :NA 2trcP 229 :ER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7879 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1372828300.pdb -s /var/tmp/to_scwrl_1372828300.seq -o /var/tmp/from_scwrl_1372828300.pdb > /var/tmp/scwrl_1372828300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1372828300.pdb Number of alignments=1125 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)I40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSN 2trcP 14 :EGQ T0287 4 :NMRKLFSMIA 2trcP 28 :DWRKFKLESE T0287 16 :KD 2trcP 40 :DS T0287 18 :KKEKLIESLQENELLNTDEKKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV T0287 109 :LFSKFDR 2trcP 140 :IYEDGVR T0287 116 :SILGIFLPFF 2trcP 153 :SSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDEEVNFYANL 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVA T0287 172 :EQYND 2trcP 206 :EQFAE T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7893 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1770667824.pdb -s /var/tmp/to_scwrl_1770667824.seq -o /var/tmp/from_scwrl_1770667824.pdb > /var/tmp/scwrl_1770667824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770667824.pdb Number of alignments=1126 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNM 2trcP 14 :EGQAT T0287 16 :KDKKEKLIESLQENEL 2trcP 19 :HTGPKGVINDWRKFKL T0287 33 :NTDEKK 2trcP 61 :DKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 13 number of extra gaps= 0 total=7906 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1557057572.pdb -s /var/tmp/to_scwrl_1557057572.seq -o /var/tmp/from_scwrl_1557057572.pdb > /var/tmp/scwrl_1557057572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1557057572.pdb Number of alignments=1127 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-adpstyle1.a2m # 2trcP read from T0287-2trcP-t06-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7907 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1169536329.pdb -s /var/tmp/to_scwrl_1169536329.seq -o /var/tmp/from_scwrl_1169536329.pdb > /var/tmp/scwrl_1169536329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1169536329.pdb Number of alignments=1128 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLES 2trcP 109 :PRYGFVYELETG Number of specific fragments extracted= 7 number of extra gaps= 0 total=7914 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1742504769.pdb -s /var/tmp/to_scwrl_1742504769.seq -o /var/tmp/from_scwrl_1742504769.pdb > /var/tmp/scwrl_1742504769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1742504769.pdb Number of alignments=1129 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=7921 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1137299367.pdb -s /var/tmp/to_scwrl_1137299367.seq -o /var/tmp/from_scwrl_1137299367.pdb > /var/tmp/scwrl_1137299367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1137299367.pdb Number of alignments=1130 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 9 number of extra gaps= 0 total=7930 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1975387588.pdb -s /var/tmp/to_scwrl_1975387588.seq -o /var/tmp/from_scwrl_1975387588.pdb > /var/tmp/scwrl_1975387588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1975387588.pdb Number of alignments=1131 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-adpstyle1.a2m # 2trcP read from T0287-2trcP-t2k-global-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)M130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKLFSMIA 2trcP 27 :NDWRKFKLESE T0287 16 :K 2trcP 40 :D T0287 17 :DKKEKLIESLQENELLNTDEKK 2trcP 45 :SKKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TM 2trcP 74 :IQ T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 81 :VDKFKKVYRLLESET 2trcP 108 :GPRYGFVYELETGEQ T0287 96 :MELLHAIAENPNFLFSKFDRSILG 2trcP 124 :LETIEKEQKVTTIVVNIYEDGVRG T0287 120 :IFLPFFSK 2trcP 155 :LECLAAEY T0287 131 :FKMSIREMDSQIELYGTNLPLLKLFVMTDEEV 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKG 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYG T0287 196 :VQNA 2trcP 227 :LPER Number of specific fragments extracted= 14 number of extra gaps= 1 total=7944 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1267594167.pdb -s /var/tmp/to_scwrl_1267594167.seq -o /var/tmp/from_scwrl_1267594167.pdb > /var/tmp/scwrl_1267594167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267594167.pdb Number of alignments=1132 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-global-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)I12 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)A13 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)Q43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)K45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)P150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)L152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MS 2trcP 14 :EG T0287 3 :NNMRKL 2trcP 27 :NDWRKF T0287 9 :FSM 2trcP 35 :ESE T0287 14 :DSKD 2trcP 40 :DSIP T0287 18 :KKEKLIESLQENELLNTDEKK 2trcP 46 :KKEILRQMSSPQSRDDKDSKE T0287 42 :D 2trcP 70 :R T0287 46 :TMHDFFKQMHTNKGALDKVLRN 2trcP 75 :QEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLESETM 2trcP 109 :PRYGFVYELETGEQF T0287 99 :LHAIAEN 2trcP 124 :LETIEKE T0287 115 :RSILGIFLPFFSKPI 2trcP 131 :QKVTTIVVNIYEDGV T0287 133 :MSIREMDSQIELYGTNL 2trcP 146 :RGCDALNSSLECLAAEY T0287 153 :KLFVMTDEEVN 2trcP 166 :KFCKIRASNTG T0287 164 :FYANLKTIEQY 2trcP 191 :VYKGGELISNF T0287 175 :NDYVRDLLMKFDLEKYMKEKGVQ 2trcP 205 :AEQFAEDFFAADVESFLNEYGLL T0287 198 :NA 2trcP 229 :ER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7961 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1874183390.pdb -s /var/tmp/to_scwrl_1874183390.seq -o /var/tmp/from_scwrl_1874183390.pdb > /var/tmp/scwrl_1874183390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1874183390.pdb Number of alignments=1133 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Q27 because of BadResidue code BAD_PEPTIDE in next template residue (2trcP)G39 Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (2trcP)G39 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLFSMIAD 2trcP 14 :EGQATHTGPKGVIN T0287 17 :DKKEKLIESL 2trcP 28 :DWRKFKLESE T0287 29 :N 2trcP 40 :D T0287 30 :ELL 2trcP 48 :EIL T0287 33 :NTDEKKK 2trcP 60 :DDKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV T0287 109 :LFSKFDR 2trcP 140 :IYEDGVR T0287 116 :SILGIFLPFF 2trcP 153 :SSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPL 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPT T0287 154 :LFVMTDEEV 2trcP 189 :LLVYKGGEL T0287 163 :NFYAN 2trcP 200 :NFISV T0287 171 :IEQYND 2trcP 205 :AEQFAE T0287 182 :LMKFDLEKYMKEKGV 2trcP 212 :FFAADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 17 number of extra gaps= 1 total=7978 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_447423427.pdb -s /var/tmp/to_scwrl_447423427.seq -o /var/tmp/from_scwrl_447423427.pdb > /var/tmp/scwrl_447423427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_447423427.pdb Number of alignments=1134 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNM 2trcP 14 :EGQAT T0287 16 :KDKKEKLIESLQENEL 2trcP 19 :HTGPKGVINDWRKFKL T0287 33 :NTDEKK 2trcP 61 :DKDSKE T0287 45 :KTMHDFFKQMHTNKGALDKVLRN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL T0287 197 :QNA 2trcP 228 :PER Number of specific fragments extracted= 13 number of extra gaps= 0 total=7991 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1589901847.pdb -s /var/tmp/to_scwrl_1589901847.seq -o /var/tmp/from_scwrl_1589901847.pdb > /var/tmp/scwrl_1589901847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1589901847.pdb Number of alignments=1135 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-adpstyle1.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-adpstyle1.a2m # 2trcP read from T0287-2trcP-t2k-local-adpstyle1.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 T0287 48 :HDFFKQMHTNKGALDKVLRN 2trcP 77 :YELIHQDKEDEGCLRKYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=7992 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1840762324.pdb -s /var/tmp/to_scwrl_1840762324.seq -o /var/tmp/from_scwrl_1840762324.pdb > /var/tmp/scwrl_1840762324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1840762324.pdb Number of alignments=1136 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-local-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVIKS 2trcP 103 :QKLSF T0287 80 :G 2trcP 108 :G T0287 82 :DKFKKVYRLLES 2trcP 109 :PRYGFVYELETG Number of specific fragments extracted= 7 number of extra gaps= 0 total=7999 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1969157561.pdb -s /var/tmp/to_scwrl_1969157561.seq -o /var/tmp/from_scwrl_1969157561.pdb > /var/tmp/scwrl_1969157561.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1969157561.pdb Number of alignments=1137 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)K21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)I23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)S25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)R73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 T0287 14 :DSKDKKE 2trcP 60 :DDKDSKE T0287 24 :E 2trcP 70 :R T0287 26 :LQENELLNTDE 2trcP 74 :IQEYELIHQDK T0287 56 :TNKGALDKVLRN 2trcP 85 :EDEGCLRKYRRQ T0287 74 :AVI 2trcP 103 :QKL T0287 79 :IGVDKFKKVYRLLESE 2trcP 106 :SFGPRYGFVYELETGE T0287 97 :ELLHAIAENPNF 2trcP 122 :QFLETIEKEQKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=8006 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_587672885.pdb -s /var/tmp/to_scwrl_587672885.seq -o /var/tmp/from_scwrl_587672885.pdb > /var/tmp/scwrl_587672885.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_587672885.pdb Number of alignments=1138 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2trcP read from T0287-2trcP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2trcP in template set Warning: unaligning (T0287)Y68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)K70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)D71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)P106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)F108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 47 :MHDFFKQMHTNKGALDKVLRN 2trcP 76 :EYELIHQDKEDEGCLRKYRRQ T0287 72 :YRAVIKS 2trcP 123 :FLETIEK T0287 80 :GVDKFKKVYRLLES 2trcP 144 :GVRGCDALNSSLEC T0287 101 :AIAEN 2trcP 158 :LAAEY T0287 109 :LF 2trcP 166 :KF T0287 111 :SKFDRSILGIFL 2trcP 179 :DRFSSDVLPTLL T0287 130 :MFK 2trcP 191 :VYK T0287 133 :MSIREMDSQIELYGTNLP 2trcP 196 :ELISNFISVAEQFAEDFF T0287 184 :KFDLEKYMKEKGV 2trcP 214 :AADVESFLNEYGL Number of specific fragments extracted= 9 number of extra gaps= 0 total=8015 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1809029823.pdb -s /var/tmp/to_scwrl_1809029823.seq -o /var/tmp/from_scwrl_1809029823.pdb > /var/tmp/scwrl_1809029823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1809029823.pdb Number of alignments=1139 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t04-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2trcP-t04-muscle.a2m.gz # 2trcP read from T0287-2trcP-t04-muscle.a2m.gz # found chain 2trcP in template set Warning: unaligning (T0287)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)E30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)L32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)T34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)A60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)L61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)K63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 31 :L 2trcP 70 :R T0287 35 :DEKKKIIDQIKTMHDFFKQMHTN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2trcP 103 :QKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 7 number of extra gaps= 0 total=8022 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2088120915.pdb -s /var/tmp/to_scwrl_2088120915.seq -o /var/tmp/from_scwrl_2088120915.pdb > /var/tmp/scwrl_2088120915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2088120915.pdb Number of alignments=1140 # Reading fragments from alignment file # Attempting to read fragment alignments from file T0287-2trcP-t2k-muscle.a2m.gz with NO bystroff filtering # T0287 read from T0287-2trcP-t2k-muscle.a2m.gz # 2trcP read from T0287-2trcP-t2k-muscle.a2m.gz # found chain 2trcP in template set Warning: unaligning (T0287)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S69 Warning: unaligning (T0287)E30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S69 Warning: unaligning (T0287)L32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)S73 Warning: unaligning (T0287)T34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)S73 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)Q99 Warning: unaligning (T0287)A60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)Q99 Warning: unaligning (T0287)L61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)H102 Warning: unaligning (T0287)K63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)H102 Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2trcP)V165 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2trcP)V165 T0287 1 :MSNNMRKLFSMIADSKDKKEKLIESLQ 2trcP 40 :DSIPPSKKEILRQMSSPQSRDDKDSKE T0287 31 :L 2trcP 70 :R T0287 35 :DEKKKIIDQIKTMHDFFKQMHTN 2trcP 74 :IQEYELIHQDKEDEGCLRKYRRQ T0287 64 :VLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIA 2trcP 103 :QKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYE T0287 106 :PNFLFSKFDRSILGIFLPFF 2trcP 143 :DGVRGCDALNSSLECLAAEY T0287 129 :IMFKMSIREMDSQIELYGTNLPLLKLFVMTDE 2trcP 166 :KFCKIRASNTGAGDRFSSDVLPTLLVYKGGEL T0287 168 :LKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA 2trcP 198 :ISNFISVAEQFAEDFFAADVESFLNEYGLLPE Number of specific fragments extracted= 7 number of extra gaps= 0 total=8029 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_989238814.pdb -s /var/tmp/to_scwrl_989238814.seq -o /var/tmp/from_scwrl_989238814.pdb > /var/tmp/scwrl_989238814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_989238814.pdb Number of alignments=1141 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1141 alignments, # shrinking each end by up to 0*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1142: T0287+1g24A-T0287-t2k-global-adpstyle1.a2m:1g24A at pool[892] 248.763 cost/residue, 435 clashes 0.368943 breaks # command:# naming current conformation T0287.try5-al1 # command:# Prefix for input files set to # command:CPU_time= 393.815 sec, elapsed time= 1167.26 sec) # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1141 alignments, # shrinking each end by up to 0*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1142: T0287.try5-al1+1sz9A-T0287-t2k-global-adpstyle1.a2m:1sz9A at pool[132] 240.127 cost/residue, 359 clashes 0.208845 breaks # command:# naming current conformation T0287.try5-al3 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1141 alignments, # shrinking each end by up to 0.2*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1142: T0287.try5-al3+T0287-1g24A-t04-local-adpstyle1.a2m:1g24A at pool[243] 238.853 cost/residue, 247 clashes 0.160829 breaks # command:# naming current conformation T0287.try5-al4 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1141 alignments, # shrinking each end by up to 0.3*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 1142: T0287.try5-al4 238.853 cost/residue, 247 clashes 0.160829 breaks # command:# naming current conformation T0287.try5-al5 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1141 alignments, # shrinking each end by up to 0.4*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1142: T0287.try5-al5+1g5aA-T0287-t06-local-adpstyle5.a2m:1g5aA at pool[187] 236.154 cost/residue, 189 clashes 0.191495 breaks # command:# naming current conformation T0287.try5-al6 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1141 alignments, # shrinking each end by up to 0.5*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 1142: T0287.try5-al6 236.154 cost/residue, 189 clashes 0.191495 breaks # command:# naming current conformation T0287.try5-al7 # command: # TryAllAlign to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will try all 1141 alignments, # shrinking each end by up to 0*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 1142: T0287.try5-al7+1g24A-T0287-t2k-local-adpstyle5.a2m:1g24A at pool[22] 235.243 cost/residue, 344 clashes 0.286563 breaks # command:# naming current conformation T0287.try5-al8 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1054194703.pdb -s /var/tmp/to_scwrl_1054194703.seq -o /var/tmp/from_scwrl_1054194703.pdb > /var/tmp/scwrl_1054194703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1054194703.pdb # conformation set from SCWRL output # command:# naming current conformation T0287.try5 # command:# CostConform T0287.try5 costs 228.099 T0287.try5-al8 costs 235.243 T0287.try5-al7 costs 236.154 T0287.try5-al6 costs 236.154 T0287.try5-al5 costs 238.853 T0287.try5-al4 costs 238.853 T0287.try5-al3 costs 240.127 T0287.try5-al1 costs 248.763 T0287 costs 442.509 # command:CPU_time= 1064.5 sec, elapsed time= 1927.54 sec) # command:# Prefix for input files set to # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0287.t2k.many.frag with CODEWEIGHT bystroff filtering # T0287 read from T0287.t2k.many.frag # 1e9rA.1.164 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N4 (1e9rA)S238 because E (beta_S) conformation "forbidden" or filtered. T0287 1 :MSN 1e9rA 235 :GTP T0287 5 :MRKLF 1e9rA 239 :MRELF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8031 # 1wu7A.1.175 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)M1 (1wu7A)T176 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1wu7A 177 :SSDPFSVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=8032 # 1xsvA.1.25 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 1 :MSNNMRKLF 1xsvA 23 :LTNKQRNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8033 # 1zpyA.1.12 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 1 :MSN 1zpyA 13 :LSD T0287 6 :RKLF 1zpyA 18 :RDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=8035 # 1efyA.1.3 read from T0287.t2k.many.frag # found chain 1efyA in template set Warning: unaligning (T0287)M1 (1efyA)L665 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S2 (1efyA)A666 because P (beta_P) conformation "forbidden" or filtered. T0287 3 :NNMRKLF 1efyA 667 :KPIQDLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8036 # 1u61A.1.37 read from T0287.t2k.many.frag # found chain 1u61A in template set T0287 1 :MSNNMRKLF 1u61A 35 :RPNQLHRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8037 # 2b06A.1.120 read from T0287.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 1 :MSN 2b06A 121 :LAY T0287 5 :MRKLF 2b06A 125 :MLPLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=8039 # 2czsA.1.12 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S2 (2czsA)D36 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 2czsA 35 :L T0287 3 :NNMRKLF 2czsA 37 :TNHKRFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8041 # 1z7xW.1.211 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 1 :MSNNMRKLF 1z7xW 211 :TSDNCRDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8042 # 1v96A.1.17 read from T0287.t2k.many.frag # found chain 1v96A in template set T0287 1 :MSNNMRKLF 1v96A 18 :HSQNMKRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8043 # 1p0yA.1.306 read from T0287.t2k.many.frag # found chain 1p0yA in template set Warning: unaligning (T0287)N4 (1p0yA)G354 because T (delta_L) conformation "forbidden" or filtered. T0287 1 :MSN 1p0yA 351 :LPP T0287 5 :MRKLF 1p0yA 355 :LLPYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8045 # 1qg8A.1.11 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 1 :MSNNMRKLF 1qg8A 13 :KSDYVAKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8046 # 1j93A.1.165 read from T0287.t2k.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N3 (1j93A)K167 because G (3-10) conformation "forbidden" or filtered. T0287 1 :MS 1j93A 165 :SS T0287 4 :NMRKLF 1j93A 168 :NFTKIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8048 # 2f22A.1.32 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 1 :MSNNMRKLF 2f22A 32 :ELGTLRKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8049 # 1yvrA.1.143 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 1 :MSNNMRKLF 1yvrA 144 :WGRALRKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8050 # 1ah7.1.190 read from T0287.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1ah7 191 :V T0287 3 :NNMRKLF 1ah7 193 :DNTKDWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8052 # 1x91A.1.29 read from T0287.t2k.many.frag # found chain 1x91A in training set T0287 1 :MSNNMRKLF 1x91A 26 :ASANLQALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8053 # 2b0tA.1.59 read from T0287.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)S2 (2b0tA)G61 because S (epsilon) conformation "forbidden" or filtered. T0287 1 :M 2b0tA 60 :V T0287 3 :NNMRKLF 2b0tA 62 :NALAELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=8055 # 1pu6A.1.60 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1pu6A 61 :L T0287 3 :NNMRKLF 1pu6A 63 :NDDEINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8057 # 1ua4A.1.237 read from T0287.t2k.many.frag # found chain 1ua4A in template set T0287 1 :MSNNMRKLF 1ua4A 238 :TKENYKEPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8058 # 1yd0A.1.0 read from T0287.t2k.many.frag # found chain 1yd0A in training set T0287 1 :MSNNMRKLF 1yd0A 1 :MKEKIRKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8059 # 1qhlA.1.166 read from T0287.t2k.many.frag # found chain 1qhlA in template set T0287 1 :MSNNMRKLF 1qhlA 167 :QFNSITDYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8060 # 1jfzA.1.0 read from T0287.t2k.many.frag # found chain 1jfzA in template set T0287 1 :MSNNMRKLF 1jfzA 0 :GMKMLEQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8061 # 1ldjA.1.298 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S2 (1ldjA)N316 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 T0287 1 :M 1ldjA 315 :K T0287 3 :NNMRKL 1ldjA 317 :EDLGRM Number of specific fragments extracted= 2 number of extra gaps= 2 total=8063 # 2bg5A.1.276 read from T0287.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0287)M1 (2bg5A)S526 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 2bg5A 527 :ATSIPEIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8064 # 1utcA.1.329 read from T0287.t2k.many.frag # found chain 1utcA in template set T0287 1 :MSNNMRKLF 1utcA 330 :EEENIIPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8065 # 1qgiA.1.181 read from T0287.t2k.many.frag # found chain 1qgiA in training set Warning: unaligning (T0287)N4 (1qgiA)T185 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MSN 1qgiA 182 :GSD T0287 5 :MRKLF 1qgiA 186 :LQGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8067 # 1fm0D.1.23 read from T0287.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0287)N4 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :MSN 1fm0D 24 :DFP T0287 5 :MRKLF 1fm0D 28 :VEALR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8069 # 2b6cA.1.120 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)L119 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLF 2b6cA 120 :TELPTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=8070 # 1m5wA.1.111 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 1 :MSNNMRKLF 1m5wA 112 :QRDKMRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8071 # 1wu7A.2.176 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 2 :SNNMRKLFS 1wu7A 177 :SSDPFSVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8072 # 1xsvA.2.26 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 2 :SNNMRKLFS 1xsvA 24 :TNKQRNYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8073 # 1efyA.2.4 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 2 :SNNMRKLFS 1efyA 666 :AKPIQDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8074 # 1e9rA.2.165 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 2 :SNNMRKLFS 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8075 # 2czsA.2.13 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)M5 (2czsA)H39 because G (3-10) conformation "forbidden" or filtered. T0287 2 :SNN 2czsA 36 :DTN T0287 6 :RKLFS 2czsA 40 :KRFYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8077 # 1zpyA.2.13 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 2 :SN 1zpyA 14 :SD T0287 6 :RKLFS 1zpyA 18 :RDMHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8079 # 1ah7.2.191 read from T0287.t2k.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1ah7 193 :DNTKDWFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=8080 # 2f22A.2.33 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)N3 (2f22A)G34 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :S 2f22A 33 :L T0287 4 :NMRKLFS 2f22A 35 :TLRKLFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8082 # 1qg8A.2.12 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 2 :SNNMRKLFS 1qg8A 14 :SDYVAKSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8083 # 2b06A.2.121 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 2 :SNNMRKLFS 2b06A 122 :AYDMLPLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=8084 # 1j93A.2.166 read from T0287.t2k.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 2 :SNN 1j93A 166 :SKN T0287 6 :RKLFS 1j93A 170 :TKIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8086 # 1z7xW.2.212 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 2 :SNNMRKLFS 1z7xW 212 :SDNCRDLCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8087 # 1ldjA.2.299 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 2 :SNNMRKL 1ldjA 316 :NEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=8088 # 1yvrA.2.144 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 2 :SNNMRKLFS 1yvrA 145 :GRALRKAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8089 # 1ua4A.2.238 read from T0287.t2k.many.frag # found chain 1ua4A in template set T0287 2 :SNNMRKLFS 1ua4A 239 :KENYKEPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8090 # 1m5wA.2.112 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 2 :SNNMRKLFS 1m5wA 113 :RDKMRDACK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8091 # 1wb9A.2.429 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 2 :SNNMRKLFS 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8092 # 1u61A.2.38 read from T0287.t2k.many.frag # found chain 1u61A in template set T0287 2 :SNNMRKLFS 1u61A 36 :PNQLHRLGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8093 # 1dozA.2.17 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 2 :SNNMRKLFS 1dozA 19 :EEDIERYYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8094 # 2b6cA.2.121 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLFS 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8095 # 1v96A.2.18 read from T0287.t2k.many.frag # found chain 1v96A in template set T0287 2 :SNNMRKLFS 1v96A 19 :SQNMKRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8096 # 1yd0A.2.1 read from T0287.t2k.many.frag # found chain 1yd0A in training set T0287 2 :SNNMRKLFS 1yd0A 2 :KEKIRKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8097 # 1xfiA.2.38 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 2 :SNNMRKLFS 1xfiA 39 :TPNEISWIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8098 # 1pu6A.2.61 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N3 (1pu6A)N63 because G (3-10) conformation "forbidden" or filtered. T0287 4 :NMRKLFS 1pu6A 64 :DDEINLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8099 # 3thiA.2.120 read from T0287.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N4 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 3thiA 129 :VD T0287 5 :MRKLFS 3thiA 132 :IYELYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8101 # 1p0yA.2.307 read from T0287.t2k.many.frag # found chain 1p0yA in template set Warning: unaligning (T0287)N3 (1p0yA)P353 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N4 (1p0yA)G354 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :S 1p0yA 352 :P T0287 5 :MRKLFS 1p0yA 355 :LLPYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8103 # 1z0wA.2.174 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 2 :SNNMRKLFS 1z0wA 589 :VSRINEVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8104 # 2ahrA.2.154 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 2 :SNNMRKLFS 2ahrA 152 :EKDFDTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8105 # 1hw1A.2.120 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 2 :SNNMRKLFS 1hw1A 121 :PDKAQEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8106 # 2b0tA.2.60 read from T0287.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)S2 (2b0tA)G61 because S (epsilon) conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 2b0tA 62 :NALAELGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8107 # 1wu7A.3.177 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 3 :NNMRKLFSM 1wu7A 178 :SDPFSVFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8108 # 1efyA.3.5 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 3 :NNMRKLFSM 1efyA 667 :KPIQDLIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8109 # 1xsvA.3.27 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 3 :NNMRKLFSM 1xsvA 25 :NKQRNYLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8110 # 1zpyA.3.14 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 3 :N 1zpyA 15 :D T0287 6 :RKLFSM 1zpyA 18 :RDMHRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8112 # 1ah7.3.192 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 3 :NNMRKLFSM 1ah7 193 :DNTKDWFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8113 # 2czsA.3.14 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 3 :NNMRKLFSM 2czsA 37 :TNHKRFYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8114 # 1e9rA.3.166 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 3 :NNMRKLFSM 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8115 # 2f22A.3.34 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 3 :NNMRKLFSM 2f22A 34 :GTLRKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8116 # 2b6cA.3.122 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 3 :NNMRKLFSM 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8117 # 1m5wA.3.113 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 3 :NNMRKLFSM 1m5wA 114 :DKMRDACKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8118 # 1ldjA.3.300 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 3 :NNMRKL 1ldjA 317 :EDLGRM T0287 11 :M 1ldjA 325 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=8120 # 1dozA.3.18 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 3 :NNMRKLFSM 1dozA 20 :EDIERYYTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8121 # 2b06A.3.122 read from T0287.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N3 (2b06A)Y123 because P (beta_P) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 2b06A 124 :DMLPLMEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=8122 # 1wb9A.3.430 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 3 :NNMRKLFSM 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8123 # 1z7xW.3.213 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 3 :NNMRKLFSM 1z7xW 213 :DNCRDLCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8124 # 1j93A.3.167 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 3 :NNMRKLFSM 1j93A 167 :KNFTKIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8125 # 1qg8A.3.13 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 3 :NNMRKLFSM 1qg8A 15 :DYVAKSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8126 # 3thiA.3.121 read from T0287.t2k.many.frag # found chain 3thiA in template set T0287 3 :NNMRKLFSM 3thiA 130 :DNIYELYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8127 # 1ee4A.3.296 read from T0287.t2k.many.frag # found chain 1ee4A in template set T0287 3 :NNMRKLFSM 1ee4A 383 :NLIPPLVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8128 # 1yvrA.3.145 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 3 :NNMRKLFSM 1yvrA 146 :RALRKAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8129 # 1ua4A.3.239 read from T0287.t2k.many.frag # found chain 1ua4A in template set Warning: unaligning (T0287)N4 (1ua4A)N241 because G (3-10) conformation "forbidden" or filtered. T0287 3 :N 1ua4A 240 :E T0287 5 :MRKLFSM 1ua4A 242 :YKEPFEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8131 # 1xfiA.3.39 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 3 :NNMRKLFSM 1xfiA 40 :PNEISWINV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8132 # 1b25A.3.502 read from T0287.t2k.many.frag # found chain 1b25A in template set T0287 3 :NNMRKLFSM 1b25A 503 :DYYPKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8133 # 1u61A.3.39 read from T0287.t2k.many.frag # found chain 1u61A in template set T0287 3 :NNMRKLFSM 1u61A 37 :NQLHRLGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8134 # 1z0wA.3.175 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 1z0wA 590 :S T0287 5 :MRKLFSM 1z0wA 592 :INEVLEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=8136 # 1hw1A.3.121 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 3 :NNMRKLFSM 1hw1A 122 :DKAQEVLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8137 # 2ahrA.3.155 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 3 :NNMRKLFSM 2ahrA 153 :KDFDTFTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8138 # 2b0tA.3.61 read from T0287.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)N3 (2b0tA)N62 because D (zeta) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 2b0tA 63 :ALAELGEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8139 # 1yqyA.3.29 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 3 :NNMRKLFSM 1yqyA 287 :EEGRGLLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8140 # 1yavA.3.102 read from T0287.t2k.many.frag # found chain 1yavA in template set T0287 3 :NNMRKLFSM 1yavA 103 :DPIMKGFGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8141 # 1wu7A.4.178 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)N4 (1wu7A)D179 because P (beta_P) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1wu7A 180 :PFSVFSII Number of specific fragments extracted= 1 number of extra gaps= 1 total=8142 # 1ah7.4.193 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 4 :NMRKLFSMI 1ah7 194 :NTKDWFVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8143 # 1efyA.4.6 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 4 :NMRKLFSMI 1efyA 668 :PIQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8144 # 1xsvA.4.28 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 4 :NMRKLFSMI 1xsvA 26 :KQRNYLELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8145 # 1zpyA.4.15 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMI 1zpyA 18 :RDMHRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8146 # 2czsA.4.15 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)M5 (2czsA)H39 because G (3-10) conformation "forbidden" or filtered. T0287 4 :N 2czsA 38 :N T0287 6 :RKLFSMI 2czsA 40 :KRFYDAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8148 # 1m5wA.4.114 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 4 :NMRKLFSMI 1m5wA 115 :KMRDACKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8149 # 1e9rA.4.167 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 4 :NMRKLFSMI 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8150 # 1ldjA.4.301 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 4 :NMRKL 1ldjA 318 :DLGRM T0287 11 :MI 1ldjA 325 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8152 # 2b6cA.4.123 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 4 :NMRKLFSMI 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8153 # 1dozA.4.19 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 4 :NMRKLFSMI 1dozA 21 :DIERYYTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8154 # 2f22A.4.35 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 4 :NMRKLFSMI 2f22A 35 :TLRKLFIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8155 # 2b06A.4.123 read from T0287.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 2b06A 125 :MLPLMEMM Number of specific fragments extracted= 1 number of extra gaps= 1 total=8156 # 1yvrA.4.146 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 4 :NMRKLFSMI 1yvrA 147 :ALRKAVSDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8157 # 1xfiA.4.40 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 4 :NMRKLFSMI 1xfiA 41 :NEISWINVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8158 # 1wb9A.4.431 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 4 :NMRKLFSMI 1wb9A 432 :ELDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8159 # 1qg8A.4.14 read from T0287.t2k.many.frag # found chain 1qg8A in training set T0287 4 :NMRKLFSMI 1qg8A 16 :YVAKSISSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8160 # 1z0wA.4.176 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 1z0wA 591 :RINEVLEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=8161 # 3thiA.4.122 read from T0287.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N4 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 3thiA 132 :IYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8162 # 1yavA.4.103 read from T0287.t2k.many.frag # found chain 1yavA in template set T0287 4 :NMRKLFSMI 1yavA 104 :PIMKGFGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8163 # 1hw1A.4.122 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 4 :NMRKLFSMI 1hw1A 123 :KAQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8164 # 1yqyA.4.30 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 4 :NMRKLFSMI 1yqyA 288 :EGRGLLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8165 # 1ua4A.4.240 read from T0287.t2k.many.frag # found chain 1ua4A in template set T0287 4 :NMRKLFSMI 1ua4A 241 :NYKEPFEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8166 # 1v74B.4.4 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 4 :NMRKLFSMI 1v74B 5 :AMIDLAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8167 # 1sd4A.4.10 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 4 :NMRKLFSMI 1sd4A 11 :AEWDVMNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=8168 # 1u7nA.4.191 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 4 :NMRKLFSMI 1u7nA 189 :LTKKAFELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8169 # 1z7xW.4.214 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 4 :NMRKLFSMI 1z7xW 214 :NCRDLCGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8170 # 1n1bA.4.207 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 4 :NMRKLFSMI 1n1bA 257 :EARWFIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8171 # 1b25A.4.503 read from T0287.t2k.many.frag # found chain 1b25A in template set T0287 4 :NMRKLFSMI 1b25A 504 :YYPKLLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8172 # 1j93A.4.168 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 4 :NMRKLFSMI 1j93A 168 :NFTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8173 # 1wu7A.5.179 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 5 :MRKLFSMIA 1wu7A 180 :PFSVFSIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=8174 # 1ah7.5.194 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 5 :MRKLFSMIA 1ah7 195 :TKDWFVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8175 # 1efyA.5.7 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 5 :MRKLFSMIA 1efyA 669 :IQDLIKMIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8176 # 1xsvA.5.29 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 5 :MRKLFSMIA 1xsvA 27 :QRNYLELFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8177 # 2czsA.5.16 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)M5 (2czsA)H39 because G (3-10) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 2czsA 40 :KRFYDAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8178 # 1zpyA.5.16 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMIA 1zpyA 18 :RDMHRAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=8179 # 1ldjA.5.302 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 5 :MRKL 1ldjA 319 :LGRM T0287 11 :MIA 1ldjA 325 :LVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8181 # 1dozA.5.20 read from T0287.t2k.many.frag # found chain 1dozA in training set T0287 5 :MRKLFSMIA 1dozA 22 :IERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8182 # 2b6cA.5.124 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 5 :MRKLFSMIA 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8183 # 1m5wA.5.115 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 5 :MRKLFSMIA 1m5wA 116 :MRDACKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8184 # 2b06A.5.124 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 5 :MRKLFSMIA 2b06A 125 :MLPLMEMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=8185 # 1wb9A.5.432 read from T0287.t2k.many.frag # found chain 1wb9A in template set T0287 5 :MRKLFSMIA 1wb9A 433 :LDEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8186 # 3htsB.5.15 read from T0287.t2k.many.frag # found chain 3htsB in training set T0287 5 :MRKLFSMIA 3htsB 198 :VNKLWSMVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8187 # 1e9rA.5.168 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 5 :MRKLFSMIA 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8188 # 1u7nA.5.192 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 5 :MRKLFSMIA 1u7nA 190 :TKKAFELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8189 # 1xfiA.5.41 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 5 :MRKLFSMIA 1xfiA 42 :EISWINVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8190 # 1n1bA.5.208 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 5 :MRKLFSMIA 1n1bA 258 :ARWFIDAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8191 # 1yavA.5.104 read from T0287.t2k.many.frag # found chain 1yavA in template set T0287 5 :MRKLFSMIA 1yavA 105 :IMKGFGMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8192 # 3thiA.5.123 read from T0287.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 3thiA 132 :IYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8193 # 1v74B.5.5 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 5 :MRKLFSMIA 1v74B 6 :MIDLAKLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8194 # 1hw1A.5.123 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 5 :MRKLFSMIA 1hw1A 124 :AQEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8195 # 1q08A.5.21 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 5 :MRKLFSMIA 1q08A 64 :IRELLSIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8196 # 1b25A.5.504 read from T0287.t2k.many.frag # found chain 1b25A in template set T0287 5 :MRKLFSMIA 1b25A 505 :YPKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8197 # 2f22A.5.36 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 5 :MRKLFSMIA 2f22A 36 :LRKLFIHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8198 # 1n5uA.5.160 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 5 :MRKLFSMIA 1n5uA 161 :YKAAFTECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8199 # 1sd4A.5.11 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 5 :MRKLFSMIA 1sd4A 12 :EWDVMNIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8200 # 1z0wA.5.177 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 5 :MRKLFSMIA 1z0wA 592 :INEVLEHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8201 # 1yvrA.5.147 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 5 :MRKLFSMIA 1yvrA 148 :LRKAVSDWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8202 # 1z7xW.5.215 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 5 :MRKLFSMIA 1z7xW 215 :CRDLCGIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8203 # 2czlA.5.125 read from T0287.t2k.many.frag # found chain 2czlA in template set T0287 5 :MRKLFSMIA 2czlA 126 :YDRILPMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8204 # 1wu7A.6.180 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 6 :RKLFSMIAD 1wu7A 181 :FSVFSIIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8205 # 1ah7.6.195 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 6 :RKLFSMIAD 1ah7 196 :KDWFVKAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8206 # 1efyA.6.8 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 6 :RKLFSMIAD 1efyA 670 :QDLIKMIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8207 # 1xsvA.6.30 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 6 :RKLFSMIAD 1xsvA 28 :RNYLELFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8208 # 2czsA.6.17 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 6 :RKLFSMIAD 2czsA 40 :KRFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8209 # 1dozA.6.21 read from T0287.t2k.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)A13 (1dozA)R30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 1dozA 23 :ERYYTHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8210 # 1ldjA.6.303 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 6 :RKL 1ldjA 320 :GRM T0287 11 :MIAD 1ldjA 325 :LVSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8212 # 1zpyA.6.17 read from T0287.t2k.many.frag # found chain 1zpyA in template set T0287 6 :RKLFSMIAD 1zpyA 18 :RDMHRAIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8213 # 2b6cA.6.125 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 6 :RKLFSMIAD 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8214 # 1m5wA.6.116 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 6 :RKLFSMIAD 1m5wA 117 :RDACKRLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8215 # 1n5uA.6.161 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 6 :RKLFSMIAD 1n5uA 162 :KAAFTECCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8216 # 1v74B.6.6 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 6 :RKLFSMIAD 1v74B 7 :IDLAKLFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8217 # 1yavA.6.105 read from T0287.t2k.many.frag # found chain 1yavA in template set Warning: unaligning (T0287)I12 (1yavA)V112 because G (3-10) conformation "forbidden" or filtered. T0287 6 :RKLFSM 1yavA 106 :MKGFGM T0287 13 :AD 1yavA 113 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8219 # 1u7nA.6.193 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 6 :RKLFSMIAD 1u7nA 191 :KKAFELLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8220 # 1n1bA.6.209 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 6 :RKLFSMIAD 1n1bA 259 :RWFIDAYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8221 # 3htsB.6.16 read from T0287.t2k.many.frag # found chain 3htsB in training set T0287 6 :RKLFSMIAD 3htsB 199 :NKLWSMVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=8222 # 2b06A.6.125 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 6 :RKLFSMIAD 2b06A 126 :LPLMEMMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8223 # 1wb9A.6.433 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 T0287 6 :RKLFSMIA 1wb9A 434 :DEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=8224 # 1hw1A.6.124 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1hw1A 125 :QEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=8225 # 1xfiA.6.42 read from T0287.t2k.many.frag # found chain 1xfiA in training set T0287 6 :RKLFSMIAD 1xfiA 43 :ISWINVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8226 # 1skvA.6.7 read from T0287.t2k.many.frag # found chain 1skvA in template set T0287 6 :RKLFSMIAD 1skvA 8 :KELFEMLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8227 # 1z0wA.6.178 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 6 :RKLFSMIAD 1z0wA 593 :NEVLEHVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8228 # 1q08A.6.22 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 6 :RKLFSMIAD 1q08A 65 :RELLSIRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=8229 # 1sd4A.6.12 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 6 :RKLFSMIAD 1sd4A 13 :WDVMNIIWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8230 # 1b43A.6.247 read from T0287.t2k.many.frag # found chain 1b43A in template set T0287 6 :RKLFSMIAD 1b43A 247 :KKALEIVRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8231 # 3thiA.6.124 read from T0287.t2k.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 3thiA 133 :YELYKKI T0287 14 :D 3thiA 141 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=8233 # 1b25A.6.505 read from T0287.t2k.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)D14 (1b25A)G514 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1b25A 506 :PKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=8234 # 1yvrA.6.148 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 6 :RKLFSMIAD 1yvrA 149 :RKAVSDWYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8235 # 1f7lA.6.12 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8236 # 1elkA.6.37 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 6 :RKLFSMIAD 1elkA 34 :MEICDIINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8237 # 1ah7.7.196 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 7 :KLFSMIADS 1ah7 197 :DWFVKAAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8238 # 1wu7A.7.181 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 7 :KLFSMIADS 1wu7A 182 :SVFSIIDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8239 # 1efyA.7.9 read from T0287.t2k.many.frag # found chain 1efyA in template set T0287 7 :KLFSMIADS 1efyA 671 :DLIKMIFDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8240 # 2czsA.7.18 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 2czsA 41 :RFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8241 # 1dozA.7.22 read from T0287.t2k.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 1dozA 24 :RYYTHIRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=8242 # 1u7nA.7.194 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 7 :KLFSMIADS 1u7nA 192 :KAFELLAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8243 # 1elkA.7.38 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 7 :KLFSMIADS 1elkA 35 :EICDIINET Number of specific fragments extracted= 1 number of extra gaps= 0 total=8244 # 1hw1A.7.125 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)A13 (1hw1A)N132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1hw1A 126 :EVLATA T0287 15 :S 1hw1A 134 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=8246 # 1n5uA.7.162 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 7 :KLFSMIADS 1n5uA 163 :AAFTECCQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8247 # 1ldjA.7.304 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 7 :KL 1ldjA 321 :RM T0287 11 :MIADS 1ldjA 325 :LVSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8249 # 1xsvA.7.31 read from T0287.t2k.many.frag # found chain 1xsvA in training set T0287 7 :KLFSMIADS 1xsvA 29 :NYLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8250 # 2b06A.7.126 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 7 :KLFSMIADS 2b06A 127 :PLMEMMEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8251 # 1z0wA.7.179 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1z0wA 594 :EVLEHVL T0287 15 :S 1z0wA 602 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=8253 # 1q08A.7.23 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 7 :KLFSMIADS 1q08A 66 :ELLSIRIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8254 # 1b43A.7.248 read from T0287.t2k.many.frag # found chain 1b43A in template set T0287 7 :KLFSMIADS 1b43A 248 :KALEIVRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8255 # 3htsB.7.17 read from T0287.t2k.many.frag # found chain 3htsB in training set Warning: unaligning (T0287)A13 (3htsB)N206 because G (3-10) conformation "forbidden" or filtered. T0287 7 :KLFSMI 3htsB 200 :KLWSMV T0287 14 :DS 3htsB 207 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8257 # 1v74B.7.7 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 7 :KLFSMIADS 1v74B 8 :DLAKLFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8258 # 1n1bA.7.210 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 7 :KLFSMIADS 1n1bA 260 :WFIDAYARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8259 # 1qv9A.7.81 read from T0287.t2k.many.frag # found chain 1qv9A in training set T0287 7 :KLFSMIADS 1qv9A 82 :KAREMLADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8260 # 1f7lA.7.13 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 7 :KLFSMIADS 1f7lA 14 :RIASMAGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8261 # 1m5wA.7.117 read from T0287.t2k.many.frag # found chain 1m5wA in template set T0287 7 :KLFSMIADS 1m5wA 118 :DACKRLADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8262 # 1sd4A.7.13 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 7 :KLFSMIADS 1sd4A 14 :DVMNIIWDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8263 # 3thiA.7.125 read from T0287.t2k.many.frag # found chain 3thiA in template set T0287 7 :KLFSMIADS 3thiA 134 :ELYKKIGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8264 # 1zpyA.7.18 read from T0287.t2k.many.frag # found chain 1zpyA in template set T0287 7 :KLFSMIADS 1zpyA 19 :DMHRAIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8265 # 1skvA.7.8 read from T0287.t2k.many.frag # found chain 1skvA in template set T0287 7 :KLFSMIADS 1skvA 9 :ELFEMLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=8266 # 2b6cA.7.126 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)D14 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 2b6cA 124 :TIFALFY T0287 15 :S 2b6cA 132 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=8268 # 1zv1A.7.14 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1zv1A 15 :KLLEKF T0287 14 :DS 1zv1A 22 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=8270 # 1g8mA.7.153 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 7 :KLFSMIADS 1g8mA 154 :SVAKEMAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8271 # 1wb9A.7.434 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 7 :KLFSMIA 1wb9A 435 :EWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=8272 # 1h6kA.7.496 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 7 :KLFSMIADS 1h6kA 516 :EIFSILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8273 # 1ah7.8.197 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 8 :LFSMIADSK 1ah7 198 :WFVKAAVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8274 # 1wu7A.8.182 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 8 :LFSMIADSK 1wu7A 183 :VFSIIDRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8275 # 1elkA.8.39 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 8 :LFSMIADSK 1elkA 36 :ICDIINETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8276 # 1z0wA.8.180 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 8 :LFSMIADSK 1z0wA 595 :VLEHVLEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8277 # 1n5uA.8.163 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)S15 (1n5uA)A171 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1n5uA 164 :AFTECCQ T0287 16 :K 1n5uA 172 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=8279 # 1u7nA.8.195 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 8 :LFSMIADSK 1u7nA 193 :AFELLAADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8280 # 1dozA.8.23 read from T0287.t2k.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIA 1dozA 25 :YYTHIR T0287 15 :SK 1dozA 32 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8282 # 1f7lA.8.14 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 8 :LFSMIADSK 1f7lA 15 :IASMAGRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8283 # 1xsvA.8.32 read from T0287.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1xsvA 30 :YLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8284 # 1efyA.8.10 read from T0287.t2k.many.frag # found chain 1efyA in template set Warning: unaligning (T0287)A13 (1efyA)F677 because G (3-10) conformation "forbidden" or filtered. T0287 8 :LFSMI 1efyA 672 :LIKMI T0287 14 :DSK 1efyA 678 :DVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8286 # 1b43A.8.249 read from T0287.t2k.many.frag # found chain 1b43A in template set T0287 8 :LFSMIADSK 1b43A 249 :ALEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8287 # 1q08A.8.24 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 8 :LFSMIADSK 1q08A 67 :LLSIRIDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8288 # 2b06A.8.127 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 8 :LFSMIADSK 2b06A 128 :LMEMMEAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8289 # 2czsA.8.19 read from T0287.t2k.many.frag # found chain 2czsA in template set T0287 8 :LFSMIADSK 2czsA 42 :FYDAFAQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8290 # 1ldjA.8.305 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 8 :L 1ldjA 322 :M T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=8292 # 3htsB.8.18 read from T0287.t2k.many.frag # found chain 3htsB in training set T0287 8 :LFSMIADSK 3htsB 201 :LWSMVNDKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8293 # 1t0qB.8.270 read from T0287.t2k.many.frag # found chain 1t0qB in template set T0287 8 :LFSMIADSK 1t0qB 271 :LVKMALEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8294 # 1qv9A.8.82 read from T0287.t2k.many.frag # found chain 1qv9A in training set T0287 8 :LFSMIADSK 1qv9A 83 :AREMLADSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8295 # 1zc6A.8.169 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 8 :LFSMIADSK 1zc6A 170 :LTQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8296 # 1sd4A.8.14 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 8 :LFSMIADSK 1sd4A 15 :VMNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8297 # 1v74B.8.8 read from T0287.t2k.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)S15 (1v74B)S16 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1v74B 9 :LAKLFLA T0287 16 :K 1v74B 17 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8299 # 1g8mA.8.154 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 8 :LFSMIADSK 1g8mA 155 :VAKEMAASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8300 # 1hw1A.8.126 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 8 :LFSMIADSK 1hw1A 127 :VLATANEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8301 # 1tn6A.8.174 read from T0287.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1tn6A)P182 because G (3-10) conformation "forbidden" or filtered. T0287 8 :LFSMI 1tn6A 175 :LVEWL T0287 14 :D 1tn6A 181 :D T0287 16 :K 1tn6A 183 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=8304 # 1otvA.8.192 read from T0287.t2k.many.frag # found chain 1otvA in template set Warning: unaligning (T0287)A13 (1otvA)C198 because N (gamma') conformation "forbidden" or filtered. T0287 8 :LFSMI 1otvA 193 :LAKAY T0287 14 :DSK 1otvA 199 :DSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8306 # 1ak0.8.92 read from T0287.t2k.many.frag # found chain 1ak0 in training set T0287 8 :LFSMIADSK 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8307 # 1hf8A.8.44 read from T0287.t2k.many.frag # found chain 1hf8A in template set T0287 8 :LFSMIADSK 1hf8A 45 :LIQCTNEMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8308 # 1zv1A.8.15 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)I12 (1zv1A)F20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSM 1zv1A 16 :LLEK T0287 14 :DSK 1zv1A 22 :YPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=8310 # 1n1bA.8.211 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 8 :LFSMIADSK 1n1bA 261 :FIDAYARRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8311 # 1ej0A.8.79 read from T0287.t2k.many.frag # found chain 1ej0A in training set T0287 8 :LFSMIADSK 1ej0A 109 :LLERVGDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8312 # 1ah7.9.198 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 9 :FSMIADSKD 1ah7 199 :FVKAAVSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8313 # 1elkA.9.40 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 9 :FSMIADSKD 1elkA 37 :CDIINETEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8314 # 1n5uA.9.164 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 9 :FSMIADSKD 1n5uA 165 :FTECCQAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8315 # 1z0wA.9.181 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. T0287 9 :FSM 1z0wA 596 :LEH T0287 13 :ADSKD 1z0wA 600 :LEDGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8317 # 1u7nA.9.196 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 9 :FSMIADSKD 1u7nA 194 :FELLAADET Number of specific fragments extracted= 1 number of extra gaps= 0 total=8318 # 1otvA.9.193 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 9 :FSMIADSKD 1otvA 194 :AKAYCDSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8319 # 1b43A.9.250 read from T0287.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 T0287 9 :FSMIADSK 1b43A 250 :LEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8320 # 1f7lA.9.15 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 9 :FSMIADSKD 1f7lA 16 :ASMAGRQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8321 # 1g8mA.9.155 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 9 :FSMIADSKD 1g8mA 156 :AKEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8322 # 1t0qB.9.271 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1t0qB 272 :VKMALEKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8323 # 1q08A.9.25 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 9 :FSMIADSKD 1q08A 68 :LSIRIDPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8324 # 1wu7A.9.183 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 9 :FSMIADSKD 1wu7A 184 :FSIIDRYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8325 # 1ldjA.9.306 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 Warning: unaligning (T0287)S15 (1ldjA)I329 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1ldjA)Q330 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIAD 1ldjA 325 :LVSR T0287 17 :D 1ldjA 331 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=8327 # 2czsA.9.20 read from T0287.t2k.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)K16 (2czsA)A50 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIADS 2czsA 43 :YDAFAQG T0287 17 :D 2czsA 51 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=8329 # 1zc6A.9.170 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIAD 1zc6A 171 :TQMALD T0287 16 :K 1zc6A 178 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=8331 # 1hw1A.9.127 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1hw1A 128 :LATANEV T0287 17 :D 1hw1A 136 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=8333 # 1qkrA.9.55 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 9 :FSMIADSKD 1qkrA 934 :SRLVRGGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8334 # 1n1bA.9.212 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 9 :FSMIADSKD 1n1bA 262 :IDAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8335 # 1tn6A.9.175 read from T0287.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1tn6A)D181 because D (zeta) conformation "forbidden" or filtered. T0287 9 :FSMI 1tn6A 176 :VEWL T0287 15 :SKD 1tn6A 182 :PSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=8337 # 1dozA.9.24 read from T0287.t2k.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIAD 1dozA 26 :YTHIRR T0287 16 :KD 1dozA 33 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8339 # 1v58A.9.145 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 9 :FSMIADSKD 1v58A 146 :AAAILASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8340 # 1sd4A.9.15 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 9 :FSMIADSKD 1sd4A 16 :MNIIWDKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8341 # 1xsvA.9.33 read from T0287.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1xsvA 31 :LELFYLE T0287 17 :D 1xsvA 39 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=8343 # 1qv9A.9.83 read from T0287.t2k.many.frag # found chain 1qv9A in training set Warning: unaligning (T0287)K16 (1qv9A)E91 because G (3-10) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1qv9A 84 :REMLADS T0287 17 :D 1qv9A 92 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=8345 # 2b06A.9.128 read from T0287.t2k.many.frag # found chain 2b06A in template set T0287 9 :FSMIADSKD 2b06A 129 :MEMMEAPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8346 # 1zv1A.9.16 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMI 1zv1A 17 :LEKF T0287 14 :DSKD 1zv1A 22 :YPWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8348 # 1ak0.9.93 read from T0287.t2k.many.frag # found chain 1ak0 in training set T0287 9 :FSMIADSKD 1ak0 94 :TQRVSDSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8349 # 1xttA.9.14 read from T0287.t2k.many.frag # found chain 1xttA in training set T0287 9 :FSMIADSKD 1xttA 15 :LTQLRDKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8350 # 1tu9A.9.12 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 9 :FSMIADSKD 1tu9A 11 :YGRCCASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8351 # 1ci4A.9.45 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1ci4A 46 :LGQFLVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8352 # 1n5uA.10.165 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)D17 (1n5uA)D173 because D (zeta) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1n5uA 166 :TECCQAA T0287 18 :K 1n5uA 174 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8354 # 1ah7.10.199 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 10 :SMIADSKDK 1ah7 200 :VKAAVSQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8355 # 1otvA.10.194 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 10 :SMIADSKDK 1otvA 195 :KAYCDSAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8356 # 1z0wA.10.182 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1z0wA)L600 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SM 1z0wA 597 :EH T0287 14 :DSKDK 1z0wA 601 :EDGKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8358 # 1elkA.10.41 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 10 :SMIADSKDK 1elkA 38 :DIINETEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8359 # 1v58A.10.146 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 10 :SMIADSKDK 1v58A 147 :AAILASKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8360 # 1n1bA.10.213 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 10 :SMIADSKDK 1n1bA 263 :DAYARRPDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8361 # 1qkrA.10.56 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 10 :SMIADSKDK 1qkrA 935 :RLVRGGSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8362 # 1t0qB.10.272 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1t0qB 273 :KMALEKE T0287 18 :K 1t0qB 281 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=8364 # 1g8mA.10.156 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 10 :SMIADSKDK 1g8mA 157 :KEMAASKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8365 # 1hw1A.10.128 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K18 (1hw1A)H137 because E (beta_S) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1hw1A 129 :ATANEVAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=8366 # 1f7lA.10.16 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 10 :SMIADSKDK 1f7lA 17 :SMAGRQKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8367 # 1ci4A.10.46 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1ci4A 47 :GQFLVLK T0287 18 :K 1ci4A 55 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=8369 # 1zc6A.10.171 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1zc6A)S180 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIAD 1zc6A 172 :QMALD T0287 16 :KD 1zc6A 178 :RH Number of specific fragments extracted= 2 number of extra gaps= 2 total=8371 # 1zv1A.10.17 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMI 1zv1A 18 :EKF T0287 15 :SKDK 1zv1A 23 :PWEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8373 # 1q08A.10.26 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 10 :SMIADSKDK 1q08A 69 :SIRIDPEHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8374 # 1u7nA.10.197 read from T0287.t2k.many.frag # found chain 1u7nA in template set T0287 10 :SMIADSKDK 1u7nA 195 :ELLAADETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8375 # 1b43A.10.251 read from T0287.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1b43A)P259 T0287 10 :SMIADSK 1b43A 251 :EIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8376 # 1ldjA.10.307 read from T0287.t2k.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 11 :MIADSKDK 1ldjA 325 :LVSRIQDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=8377 # 1tu9A.10.13 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 10 :SMIADSKDK 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8378 # 1wb9A.10.437 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 10 :SMIA 1wb9A 438 :ALAD T0287 16 :KDK 1wb9A 444 :TDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8380 # 1zybA.10.193 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 10 :SMIADSKDK 1zybA 182 :RCLDDTRLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8381 # 1ak0.10.94 read from T0287.t2k.many.frag # found chain 1ak0 in training set T0287 10 :SMIADSKDK 1ak0 95 :QRVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8382 # 1aa7A.10.11 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)I12 (1aa7A)I14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SM 1aa7A 12 :LS T0287 13 :ADS 1aa7A 15 :IPS T0287 17 :DK 1aa7A 19 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=8385 # 1qv9A.10.84 read from T0287.t2k.many.frag # found chain 1qv9A in training set T0287 10 :SMIADSKDK 1qv9A 85 :EMLADSEYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8386 # 2bnlA.10.8 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 10 :SMIADSKDK 2bnlA 9 :QFIAENQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8387 # 1tn6A.10.176 read from T0287.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1tn6A)D181 because D (zeta) conformation "forbidden" or filtered. T0287 10 :SMI 1tn6A 177 :EWL T0287 15 :SKDK 1tn6A 182 :PSQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8389 # 1i4dA.10.52 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 10 :SMIADSKDK 1i4dA 74 :DLSQKSPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8390 # 1xttA.10.15 read from T0287.t2k.many.frag # found chain 1xttA in training set T0287 10 :SMIADSKDK 1xttA 16 :TQLRDKYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8391 # 1v74B.10.10 read from T0287.t2k.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)K18 (1v74B)T19 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1v74B 11 :KLFLASKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8392 # 1n5uA.11.166 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)S15 (1n5uA)A171 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIAD 1n5uA 167 :ECCQ T0287 16 :KDKK 1n5uA 172 :ADKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8394 # 1otvA.11.195 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 11 :MIADSKDKK 1otvA 196 :AYCDSAEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8395 # 1qkrA.11.57 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 11 :MIADSKDKK 1qkrA 936 :LVRGGSGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8396 # 1z0wA.11.183 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 11 :MIADSKDKK 1z0wA 598 :HVLEDGKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8397 # 1ah7.11.200 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 11 :MIADSKDKK 1ah7 201 :KAAVSQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8398 # 1v58A.11.147 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 11 :MIADSKDKK 1v58A 148 :AILASKDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8399 # 1n1bA.11.214 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 11 :MIADSKDKK 1n1bA 264 :AYARRPDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8400 # 1elkA.11.42 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 11 :MIADSKDKK 1elkA 39 :IINETEEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8401 # 1ci4A.11.47 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. T0287 11 :MIADS 1ci4A 48 :QFLVL T0287 17 :DKK 1ci4A 54 :KDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8403 # 1zv1A.11.18 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 11 :MI 1zv1A 19 :KF T0287 14 :DSKDKK 1zv1A 22 :YPWELM Number of specific fragments extracted= 2 number of extra gaps= 1 total=8405 # 1aa7A.11.12 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 11 :MIADSKDKK 1aa7A 13 :SIIPSGPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8406 # 1t0qB.11.273 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADSK 1t0qB 274 :MALEKE T0287 18 :KK 1t0qB 281 :NR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8408 # 1ak0.11.95 read from T0287.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)A13 (1ak0)S98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 T0287 11 :MI 1ak0 96 :RV T0287 14 :DSKDK 1ak0 99 :DSSLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=8410 # 1zc6A.11.172 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIADSK 1zc6A 173 :MALDGR T0287 18 :KK 1zc6A 180 :SH Number of specific fragments extracted= 2 number of extra gaps= 1 total=8412 # 1hw1A.11.129 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIA 1hw1A 130 :TAN T0287 15 :S 1hw1A 134 :V T0287 17 :DKK 1hw1A 136 :DHA Number of specific fragments extracted= 3 number of extra gaps= 2 total=8415 # 1g8mA.11.157 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 11 :MIADSKDKK 1g8mA 158 :EMAASKDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8416 # 2bl2A.11.42 read from T0287.t2k.many.frag # found chain 2bl2A in template set T0287 11 :MIADSKDKK 2bl2A 43 :ALTTSQPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8417 # 1kxu.11.137 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 11 :MIADSKDKK 1kxu 128 :NLRESPLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8418 # 1zybA.11.194 read from T0287.t2k.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zybA)D186 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MI 1zybA 183 :CL T0287 15 :SKDKK 1zybA 187 :TRLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8420 # 1tu9A.11.14 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K16 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADS 1tu9A 13 :RCCAS T0287 17 :DKK 1tu9A 19 :GFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8422 # 1i4dA.11.53 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 11 :MIADSKDKK 1i4dA 75 :LSQKSPELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8423 # 1wb9A.11.438 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 11 :MIA 1wb9A 439 :LAD T0287 16 :KDKK 1wb9A 444 :TDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8425 # 1on2A.11.30 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 11 :MIADSKDKK 1on2A 31 :ALAVHPSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8426 # 1f7lA.11.17 read from T0287.t2k.many.frag # found chain 1f7lA in training set T0287 11 :MIADSKDKK 1f7lA 18 :MAGRQKRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8427 # 1jfbA.11.156 read from T0287.t2k.many.frag # found chain 1jfbA in training set T0287 11 :MIADSKDKK 1jfbA 156 :LLGVPFNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8428 # 1ez3A.11.36 read from T0287.t2k.many.frag # found chain 1ez3A in template set T0287 11 :MIADSKDKK 1ez3A 60 :AILASPNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8429 # 1rzhM.11.236 read from T0287.t2k.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)K16 (1rzhM)G242 because E (beta_S) conformation "forbidden" or filtered. T0287 11 :MIADS 1rzhM 237 :QIADR T0287 17 :DKK 1rzhM 243 :TAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8431 # 1xttA.11.16 read from T0287.t2k.many.frag # found chain 1xttA in training set T0287 11 :MIADSKDKK 1xttA 17 :QLRDKYTDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8432 # 1q08A.11.27 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 11 :MIADSKDKK 1q08A 70 :IRIDPEHHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8433 # 1oksA.11.12 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 11 :MIADSKDKK 1oksA 13 :SSRLEEDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8434 # 1n5uA.12.167 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 12 :IADSKDKKE 1n5uA 168 :CCQAADKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8435 # 1otvA.12.196 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 12 :IADSKDKKE 1otvA 197 :YCDSAEKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8436 # 1qkrA.12.58 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 12 :IADSKDKKE 1qkrA 937 :VRGGSGNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8437 # 1z0wA.12.184 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)A13 (1z0wA)L600 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :I 1z0wA 599 :V T0287 14 :DSKDKKE 1z0wA 601 :EDGKKKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8439 # 1aa7A.12.13 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADS 1aa7A 14 :IIPS T0287 17 :DKKE 1aa7A 19 :PLKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8441 # 1ah7.12.201 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 12 :IADSKDKKE 1ah7 202 :AAVSQEYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8442 # 1v58A.12.148 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 12 :IADSKDKKE 1v58A 149 :ILASKDPAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8443 # 1zv1A.12.19 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zv1A 20 :F T0287 14 :DSKDKKE 1zv1A 22 :YPWELMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=8445 # 1n1bA.12.215 read from T0287.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)S15 (1n1bA)R268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IAD 1n1bA 265 :YAR T0287 16 :KD 1n1bA 269 :PD T0287 19 :KE 1n1bA 272 :NP Number of specific fragments extracted= 3 number of extra gaps= 2 total=8448 # 1elkA.12.43 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 12 :IADSKDKKE 1elkA 40 :INETEEGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8449 # 1ci4A.12.48 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)S15 (1ci4A)L52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 12 :IAD 1ci4A 49 :FLV T0287 16 :K 1ci4A 53 :K T0287 18 :KKE 1ci4A 55 :DED Number of specific fragments extracted= 3 number of extra gaps= 2 total=8452 # 1hw1A.12.130 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IA 1hw1A 131 :AN T0287 15 :SKDKKE 1hw1A 134 :VADHAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8454 # 1kxu.12.138 read from T0287.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)A13 (1kxu)R130 because N (gamma') conformation "forbidden" or filtered. T0287 12 :I 1kxu 129 :L T0287 14 :DSKDKKE 1kxu 131 :ESPLGQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8456 # 1t0qB.12.274 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADSK 1t0qB 275 :ALEKE T0287 18 :KKE 1t0qB 281 :NRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8458 # 1ak0.12.96 read from T0287.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 12 :IADSKDK 1ak0 97 :VSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=8459 # 1on2A.12.31 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1on2A 32 :L T0287 14 :DSKDKKE 1on2A 34 :VHPSSVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8461 # 1rzhM.12.237 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 12 :IADSKDKKE 1rzhM 238 :IADRGTAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8462 # 1i4dA.12.54 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 12 :IADSKDKKE 1i4dA 76 :SQKSPELQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8463 # 2bl2A.12.43 read from T0287.t2k.many.frag # found chain 2bl2A in template set T0287 12 :IADSKDKKE 2bl2A 44 :LTTSQPEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8464 # 1wb9A.12.439 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 12 :IA 1wb9A 440 :AD T0287 16 :KDKKE 1wb9A 444 :TDYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8466 # 1jfbA.12.157 read from T0287.t2k.many.frag # found chain 1jfbA in training set T0287 12 :IADSKDKKE 1jfbA 157 :LGVPFNDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8467 # 1m0wA.12.3 read from T0287.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKE 1m0wA 7 :SKDQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8468 # 1oksA.12.13 read from T0287.t2k.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)S15 (1oksA)E17 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IAD 1oksA 14 :SRL T0287 16 :KDKKE 1oksA 18 :EDRKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8470 # 1tu9A.12.15 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 12 :IADSKDKKE 1tu9A 14 :CCASTGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8471 # 1zybA.12.195 read from T0287.t2k.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zybA)D186 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :I 1zybA 184 :L T0287 15 :SKDKKE 1zybA 187 :TRLNIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8473 # 1lvaA.12.26 read from T0287.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1lvaA 403 :A T0287 14 :DSKDKKE 1lvaA 405 :LSLEETR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8475 # 1ymtA.12.18 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 12 :IADSKDKKE 1ymtA 235 :EPEEDQVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8476 # 1q52A.12.266 read from T0287.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q52A)L267 Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 13 :ADS 1q52A 268 :LDD T0287 17 :DKKE 1q52A 272 :LVGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=8478 # 1zc6A.12.173 read from T0287.t2k.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADSK 1zc6A 174 :ALDGR T0287 18 :KKE 1zc6A 180 :SHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8480 # 1r6xA.12.11 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 12 :IADSKDKKE 1r6xA 13 :IARDALKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8481 # 1qkrA.13.59 read from T0287.t2k.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)D14 (1qkrA)G939 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 1qkrA 938 :R T0287 15 :SKDKKEK 1qkrA 940 :GSGNKRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8483 # 1n5uA.13.168 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 13 :ADSKDKKEK 1n5uA 169 :CQAADKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8484 # 1otvA.13.197 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 13 :ADSKDKKEK 1otvA 198 :CDSAEKQNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8485 # 1aa7A.13.14 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 13 :ADSKDKKEK 1aa7A 15 :IPSGPLKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8486 # 1z0wA.13.185 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :ADS 1z0wA 600 :LED T0287 17 :DKKEK 1z0wA 604 :KKKNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8488 # 1zv1A.13.20 read from T0287.t2k.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 1zv1A 21 :R T0287 15 :SKDKKEK 1zv1A 23 :PWELMPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8490 # 1on2A.13.32 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 13 :ADSKDKKEK 1on2A 33 :AVHPSSVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8491 # 1ah7.13.202 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 13 :ADSKDKKEK 1ah7 203 :AVSQEYADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8492 # 1ci4A.13.49 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :ADSK 1ci4A 50 :LVLK T0287 19 :KEK 1ci4A 56 :EDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8494 # 1lvaA.13.27 read from T0287.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1lvaA 405 :LSLEETRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8495 # 1kxu.13.139 read from T0287.t2k.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1kxu 130 :R T0287 15 :SKDKKEK 1kxu 132 :SPLGQEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8497 # 1n1bA.13.216 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 13 :ADSKDKKEK 1n1bA 266 :ARRPDMNPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8498 # 1m0wA.13.4 read from T0287.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEK 1m0wA 7 :SKDQLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8499 # 1oksA.13.14 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 13 :ADSKDKKEK 1oksA 15 :RLEEDRKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8500 # 1hw1A.13.131 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 13 :ADSKDKKEK 1hw1A 132 :NEVADHADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8501 # 1v58A.13.149 read from T0287.t2k.many.frag # found chain 1v58A in training set T0287 13 :ADSKDKKEK 1v58A 150 :LASKDPAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8502 # 1elkA.13.44 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 13 :ADSKDKKEK 1elkA 41 :NETEEGPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8503 # 1rzhM.13.238 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 13 :ADSKDKKEK 1rzhM 239 :ADRGTAAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8504 # 1q52A.13.267 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 13 :ADSKDKKEK 1q52A 268 :LDDGLVGQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8505 # 1t0qB.13.275 read from T0287.t2k.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)K16 (1t0qB)E279 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 13 :ADS 1t0qB 276 :LEK T0287 18 :KKEK 1t0qB 281 :NREV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8507 # 1ymtA.13.19 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 13 :ADSKDKKEK 1ymtA 236 :PEEDQVRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8508 # 1ak0.13.97 read from T0287.t2k.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 13 :ADSKDK 1ak0 98 :SDSSLS T0287 21 :K 1ak0 106 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=8510 # 1jfbA.13.158 read from T0287.t2k.many.frag # found chain 1jfbA in training set T0287 13 :ADSKDKKEK 1jfbA 158 :GVPFNDLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8511 # 1i4dA.13.55 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 13 :ADSKDKKEK 1i4dA 77 :QKSPELQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8512 # 1r6xA.13.12 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 13 :ADSKDKKEK 1r6xA 14 :ARDALKKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8513 # 2ayuA.13.86 read from T0287.t2k.many.frag # found chain 2ayuA in template set T0287 13 :ADSKDKKEK 2ayuA 87 :GLPKNVKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8514 # 1yrtA.13.208 read from T0287.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1yrtA)S214 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 1yrtA 209 :V T0287 15 :SKD 1yrtA 211 :SGD T0287 19 :KEK 1yrtA 215 :VTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=8517 # 1szhA.13.17 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 13 :ADSKDKKEK 1szhA 32 :CCTRNRQEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8518 # 1wb9A.13.440 read from T0287.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 13 :A 1wb9A 441 :D T0287 16 :KDKKEK 1wb9A 444 :TDYLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=8520 # 2bl2A.13.44 read from T0287.t2k.many.frag # found chain 2bl2A in template set T0287 13 :ADSKDKKEK 2bl2A 45 :TTSQPEKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8521 # 1qkrA.14.60 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 14 :DSKDKKEKL 1qkrA 939 :GGSGNKRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8522 # 1n5uA.14.169 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 14 :DSKDKKEKL 1n5uA 170 :QAADKAACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8523 # 1aa7A.14.15 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 14 :DSKDKKEKL 1aa7A 16 :PSGPLKAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8524 # 1otvA.14.198 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 14 :DSKDKKEKL 1otvA 199 :DSAEKQNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8525 # 1on2A.14.33 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 14 :DSKDKKEKL 1on2A 34 :VHPSSVTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8526 # 1z0wA.14.186 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 14 :DS 1z0wA 601 :ED T0287 17 :DKKEKL 1z0wA 604 :KKKNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8528 # 1lvaA.14.28 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 14 :DSKDKKEKL 1lvaA 405 :LSLEETRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8529 # 1kxu.14.140 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 14 :DSKDKKEKL 1kxu 131 :ESPLGQEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8530 # 1hw1A.14.132 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DS 1hw1A 133 :EV T0287 17 :DKKEKL 1hw1A 136 :DHADAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8532 # 1rzhM.14.239 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 14 :DSKDKKEKL 1rzhM 240 :DRGTAAERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8533 # 1ci4A.14.50 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 14 :DSK 1ci4A 51 :VLK T0287 18 :KKEKL 1ci4A 55 :DEDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=8535 # 1zv1A.14.21 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 14 :DSKDKKEKL 1zv1A 22 :YPWELMPLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8536 # 1szhA.14.18 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 14 :DSKDKKEKL 1szhA 33 :CTRNRQECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8537 # 1m0wA.14.5 read from T0287.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEKL 1m0wA 7 :SKDQLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8538 # 1r6xA.14.13 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 14 :DSKDKKEKL 1r6xA 15 :RDALKKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8539 # 1yovA.14.237 read from T0287.t2k.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1yovA)T236 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKL 1yovA 237 :YKEKEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=8540 # 1ah7.14.203 read from T0287.t2k.many.frag # found chain 1ah7 in training set T0287 14 :DSKDKKEKL 1ah7 204 :VSQEYADKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=8541 # 1ymtA.14.20 read from T0287.t2k.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)D14 (1ymtA)E237 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1ymtA 238 :EDQVRARI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8542 # 1q52A.14.268 read from T0287.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 14 :DS 1q52A 269 :DD T0287 17 :DKKEKL 1q52A 272 :LVGQQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8544 # 1oksA.14.15 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 14 :DSKDKKEKL 1oksA 16 :LEEDRKRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8545 # 1gxjA.14.40 read from T0287.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0287)D14 (1gxjA)E525 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1gxjA)D527 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :S 1gxjA 526 :V T0287 17 :DKKEKL 1gxjA 528 :EKYSLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=8547 # 1yiiA.14.28 read from T0287.t2k.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)D14 (1yiiA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :S 1yiiA 31 :M T0287 17 :DKKEKL 1yiiA 33 :TDEETI Number of specific fragments extracted= 2 number of extra gaps= 2 total=8549 # 1xdpA.14.66 read from T0287.t2k.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)D14 (1xdpA)G68 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1xdpA 69 :SNSHSRHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8550 # 1g2yA.14.17 read from T0287.t2k.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. T0287 14 :DS 1g2yA 18 :ES T0287 17 :DKKEKL 1g2yA 21 :LSKEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8552 # 1n1bA.14.217 read from T0287.t2k.many.frag # found chain 1n1bA in template set T0287 14 :DSKDKKEKL 1n1bA 267 :RRPDMNPLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8553 # 1jfbA.14.159 read from T0287.t2k.many.frag # found chain 1jfbA in training set T0287 14 :DSKDKKEKL 1jfbA 159 :VPFNDLEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8554 # 1elkA.14.45 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 14 :DSKDKKEKL 1elkA 42 :ETEEGPKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8555 # 1yrtA.14.209 read from T0287.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)K16 (1yrtA)G212 because T (delta_L) conformation "forbidden" or filtered. T0287 14 :DS 1yrtA 210 :TS T0287 17 :DKKEKL 1yrtA 213 :DSVTDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8557 # 1i4dA.14.56 read from T0287.t2k.many.frag # found chain 1i4dA in template set T0287 14 :DSKDKKEKL 1i4dA 78 :KSPELQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8558 # 2ayuA.14.87 read from T0287.t2k.many.frag # found chain 2ayuA in template set T0287 14 :DSKDKKEKL 2ayuA 88 :LPKNVKEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8559 # 1qkrA.15.61 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 15 :SKDKKEKLI 1qkrA 940 :GSGNKRALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8560 # 1aa7A.15.16 read from T0287.t2k.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKLI 1aa7A 19 :PLKAEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8562 # 1szhA.15.19 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 15 :SKDKKEKLI 1szhA 34 :TRNRQECCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8563 # 1on2A.15.34 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 15 :SKDKKEKLI 1on2A 35 :HPSSVTKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8564 # 1z0wA.15.187 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)S15 (1z0wA)D602 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLI 1z0wA 604 :KKKNRLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=8565 # 1otvA.15.199 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 15 :SKDKKEKLI 1otvA 200 :SAEKQNRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=8566 # 1r6xA.15.14 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 15 :SKDKKEKLI 1r6xA 16 :DALKKNELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8567 # 1w8iA.15.55 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 15 :SKDKKEKLI 1w8iA 56 :KKLPADKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8568 # 1g2yA.15.18 read from T0287.t2k.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. T0287 15 :S 1g2yA 19 :S T0287 17 :DKKEKLI 1g2yA 21 :LSKEALI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8570 # 1lvaA.15.29 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 15 :SKDKKEKLI 1lvaA 406 :SLEETRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8571 # 1rzhM.15.240 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 15 :SKDKKEKLI 1rzhM 241 :RGTAAERAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8572 # 1kxu.15.141 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 15 :SKDKKEKLI 1kxu 132 :SPLGQEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8573 # 1n5uA.15.170 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 15 :SKDKKEKLI 1n5uA 171 :AADKAACLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8574 # 1yiiA.15.29 read from T0287.t2k.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :S 1yiiA 31 :M T0287 17 :DKKEKLI 1yiiA 33 :TDEETIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8576 # 1hw1A.15.133 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 15 :SKDKKEKLI 1hw1A 134 :VADHADAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8577 # 1ci4A.15.51 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 15 :S 1ci4A 52 :L T0287 18 :KKEKLI 1ci4A 55 :DEDLFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8579 # 1ymtA.15.21 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 15 :SKDKKEKLI 1ymtA 238 :EDQVRARIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8580 # 1yovA.15.238 read from T0287.t2k.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKLI 1yovA 237 :YKEKEDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=8581 # 1uw4B.15.16 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 15 :SKDKKEKLI 1uw4B 784 :SKVTTEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8582 # 1r7jA.15.32 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 15 :SKDKKEKLI 1r7jA 33 :SYALTGRYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8583 # 1oksA.15.16 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 15 :SKDKKEKLI 1oksA 17 :EEDRKRYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8584 # 1xdpA.15.67 read from T0287.t2k.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)D17 (1xdpA)S71 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SK 1xdpA 69 :SN T0287 18 :KKEKLI 1xdpA 72 :HSRHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8586 # 1usyA.15.142 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 15 :SKDKKEKLI 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8587 # 1q52A.15.269 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 15 :SKDKKEKLI 1q52A 270 :DGLVGQQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8588 # 1zv1A.15.22 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 15 :SKDKKEKLI 1zv1A 23 :PWELMPLMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8589 # 1m0wA.15.6 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 15 :SKDKKEKLI 1m0wA 7 :SKDQLNELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8590 # 1gxjA.15.41 read from T0287.t2k.many.frag # found chain 1gxjA in template set Warning: unaligning (T0287)K16 (1gxjA)D527 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :S 1gxjA 526 :V T0287 17 :DKKEKLI 1gxjA 528 :EKYSLAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8592 # 1x3zB.15.34 read from T0287.t2k.many.frag # found chain 1x3zB in template set T0287 15 :SKDKKEKLI 1x3zB 272 :NPEALAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8593 # 1elkA.15.46 read from T0287.t2k.many.frag # found chain 1elkA in training set T0287 15 :SKDKKEKLI 1elkA 43 :TEEGPKDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8594 # 1v0jA.15.114 read from T0287.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)T118 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)T118 T0287 15 :SK 1v0jA 115 :KY T0287 19 :KEKLI 1v0jA 119 :PEQAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8596 # 1qkrA.16.62 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 16 :KDKKEKLIE 1qkrA 941 :SGNKRALIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8597 # 1on2A.16.35 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 16 :KDKKEKLIE 1on2A 36 :PSSVTKMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8598 # 1szhA.16.20 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 16 :KDKKEKLIE 1szhA 35 :RNRQECCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8599 # 1r6xA.16.15 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 16 :KDKKEKLIE 1r6xA 17 :ALKKNELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8600 # 1uw4B.16.17 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)K18 (1uw4B)T787 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1uw4B 785 :KV T0287 19 :KEKLIE 1uw4B 788 :TEKVLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8602 # 1aa7A.16.17 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 16 :KDKKEKLIE 1aa7A 18 :GPLKAEIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8603 # 1w8iA.16.56 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 16 :KDKKEKLIE 1w8iA 57 :KLPADKFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8604 # 1lvaA.16.30 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 16 :KDKKEKLIE 1lvaA 407 :LEETRKLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8605 # 1r7jA.16.33 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 16 :KDKKEKLIE 1r7jA 34 :YALTGRYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8606 # 1otvA.16.200 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 16 :KDKKEKLIE 1otvA 201 :AEKQNRMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8607 # 1ci4A.16.52 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIE 1ci4A 55 :DEDLFRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8608 # 1usyA.16.143 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 16 :KDKKEKLIE 1usyA 144 :KDLHEKVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8609 # 1rzhM.16.241 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 16 :KDKKEKLIE 1rzhM 242 :GTAAERAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8610 # 1z0wA.16.188 read from T0287.t2k.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1z0wA 604 :KKKNRLMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=8611 # 1g2yA.16.19 read from T0287.t2k.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1g2yA 21 :LSKEALIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8612 # 1yovA.16.239 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 16 :KDKKEKLIE 1yovA 237 :YKEKEDFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8613 # 1gxjA.16.42 read from T0287.t2k.many.frag # found chain 1gxjA in template set T0287 16 :KDKKEKLIE 1gxjA 527 :DEKYSLAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8614 # 1ymtA.16.22 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 16 :KDKKEKLIE 1ymtA 239 :DQVRARIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8615 # 1hw1A.16.134 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1hw1A 136 :DHADAFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=8616 # 1kxu.16.142 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 16 :KDKKEKLIE 1kxu 133 :PLGQEKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8617 # 1oksA.16.17 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 16 :KDKKEKLIE 1oksA 18 :EDRKRYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8618 # 1yiiA.16.30 read from T0287.t2k.many.frag # found chain 1yiiA in training set T0287 16 :KDKKEKLIE 1yiiA 32 :GTDEETILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8619 # 1jr2A.16.139 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIE 1jr2A 122 :AEKLAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=8621 # 1q52A.16.270 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 16 :KDKKEKLIE 1q52A 271 :GLVGQQLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8622 # 1p4xA.16.63 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 16 :KDKKEKLIE 1p4xA 64 :QSDLVQHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8623 # 1m0wA.16.7 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 16 :KDKKEKLIE 1m0wA 8 :KDQLNELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8624 # 1xdpA.16.68 read from T0287.t2k.many.frag # found chain 1xdpA in template set T0287 16 :KDKKEKLIE 1xdpA 70 :NSHSRHLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8625 # 1x3zB.16.35 read from T0287.t2k.many.frag # found chain 1x3zB in template set T0287 16 :KDKKEKLIE 1x3zB 273 :PEALAPLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8626 # 2d28C.16.3 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 16 :KDKKEKLIE 2d28C 4 :RSAETRIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8627 # 1zv1A.16.23 read from T0287.t2k.many.frag # found chain 1zv1A in template set T0287 16 :KDKKEKLIE 1zv1A 24 :WELMPLMYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8628 # 1qkrA.17.63 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 17 :DKKEKLIES 1qkrA 942 :GNKRALIQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8629 # 1on2A.17.36 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 17 :DKKEKLIES 1on2A 37 :SSVTKMVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8630 # 1szhA.17.21 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 17 :DKKEKLIES 1szhA 36 :NRQECCIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8631 # 1uw4B.17.18 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 17 :DKKEKLIES 1uw4B 786 :VTTEKVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8632 # 1r6xA.17.16 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 17 :DKKEKLIES 1r6xA 18 :LKKNELLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8633 # 1w8iA.17.57 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 17 :DKKEKLIES 1w8iA 58 :LPADKFLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8634 # 1usyA.17.144 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 17 :DKKEKLIES 1usyA 145 :DLHEKVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8635 # 1aa7A.17.18 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 17 :DKKEKLIES 1aa7A 19 :PLKAEIAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8636 # 1r7jA.17.34 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 17 :DKKEKLIES 1r7jA 35 :ALTGRYIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8637 # 1ci4A.17.53 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIES 1ci4A 55 :DEDLFREW Number of specific fragments extracted= 1 number of extra gaps= 1 total=8638 # 1lvaA.17.31 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 17 :DKKEKLIES 1lvaA 408 :EETRKLLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8639 # 1jr2A.17.140 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIES 1jr2A 122 :AEKLAEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=8641 # 1otvA.17.201 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 17 :DKKEKLIES 1otvA 202 :EKQNRMLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8642 # 1yovA.17.240 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 17 :DKKEKLIES 1yovA 238 :KEKEDFRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8643 # 1ymtA.17.23 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 17 :DKKEKLIES 1ymtA 240 :QVRARIVGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8644 # 1z0wA.17.189 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 17 :DKKEKLIES 1z0wA 604 :KKKNRLMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8645 # 1g2yA.17.20 read from T0287.t2k.many.frag # found chain 1g2yA in training set T0287 17 :DKKEKLIES 1g2yA 21 :LSKEALIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8646 # 2d28C.17.4 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 17 :DKKEKLIES 2d28C 5 :SAETRIVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8647 # 1s9rA.17.88 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 17 :DKKEKLIES 1s9rA 89 :EAKDKLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8648 # 1yiiA.17.31 read from T0287.t2k.many.frag # found chain 1yiiA in training set T0287 17 :DKKEKLIES 1yiiA 33 :TDEETILKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8649 # 1q52A.17.271 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 17 :DKKEKLIES 1q52A 272 :LVGQQLFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8650 # 1kxu.17.143 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 17 :DKKEKLIES 1kxu 134 :LGQEKALEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8651 # 1oksA.17.18 read from T0287.t2k.many.frag # found chain 1oksA in training set T0287 17 :DKKEKLIES 1oksA 19 :DRKRYLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8652 # 1rzhM.17.242 read from T0287.t2k.many.frag # found chain 1rzhM in training set T0287 17 :DKKEKLIES 1rzhM 243 :TAAERAALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8653 # 1m0wA.17.8 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 17 :DKKEKLIES 1m0wA 9 :DQLNELIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8654 # 1x3zB.17.36 read from T0287.t2k.many.frag # found chain 1x3zB in template set T0287 17 :DKKEKLIES 1x3zB 274 :EALAPLLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8655 # 1hw1A.17.135 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 17 :DKKEKLIES 1hw1A 136 :DHADAFAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8656 # 1wu7A.17.192 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 17 :DKKEKLIES 1wu7A 193 :ISREEFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8657 # 1q08A.17.19 read from T0287.t2k.many.frag # found chain 1q08A in template set T0287 17 :DKKEKLIES 1q08A 62 :ESIRELLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8658 # 1gk9B.17.313 read from T0287.t2k.many.frag # found chain 1gk9B in training set T0287 17 :DKKEKLIES 1gk9B 314 :DPRRQLVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=8659 # 1on2A.18.37 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 18 :KKEKLIESL 1on2A 38 :SVTKMVQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8660 # 1uw4B.18.19 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 18 :KKEKLIESL 1uw4B 787 :TTEKVLRQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8661 # 1r6xA.18.17 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 18 :KKEKLIESL 1r6xA 19 :KKNELLSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8662 # 1r7jA.18.35 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 18 :KKEKLIESL 1r7jA 36 :LTGRYIKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=8663 # 1w8iA.18.58 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 18 :KKEKLIESL 1w8iA 59 :PADKFLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8664 # 1lvaA.18.32 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 18 :KKEKLIESL 1lvaA 409 :ETRKLLQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8665 # 1szhA.18.22 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 18 :KKEKLIESL 1szhA 37 :RQECCIEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8666 # 1qkrA.18.64 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 18 :KKEKLIESL 1qkrA 943 :NKRALIQCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8667 # 1usyA.18.145 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 18 :KKEKLIESL 1usyA 146 :LHEKVLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8668 # 1aa7A.18.19 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 18 :KKEKLIESL 1aa7A 20 :LKAEIAQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8669 # 1jr2A.18.141 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1jr2A 122 :AEKLAEYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=8670 # 2d28C.18.5 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 18 :KKEKLIESL 2d28C 6 :AETRIVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8671 # 1otvA.18.202 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 18 :KKEKLIESL 1otvA 203 :KQNRMLEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8672 # 1ci4A.18.54 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 18 :KKEKLIESL 1ci4A 55 :DEDLFREWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8673 # 1i58A.18.103 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 18 :KKEKLIESL 1i58A 455 :DKEKIIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8674 # 1yovA.18.241 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 18 :KKEKLIESL 1yovA 239 :EKEDFRDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8675 # 1s9rA.18.89 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 18 :KKEKLIESL 1s9rA 90 :AKDKLIEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8676 # 1sflA.18.112 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 18 :KKEKLIESL 1sflA 113 :KHQRIITHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8677 # 1q52A.18.272 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 18 :KKEKLIESL 1q52A 273 :VGQQLFAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8678 # 1z0wA.18.190 read from T0287.t2k.many.frag # found chain 1z0wA in template set T0287 18 :KKEKLIESL 1z0wA 605 :KKNRLMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8679 # 1kxu.18.144 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 18 :KKEKLIESL 1kxu 135 :GQEKALEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8680 # 2ahrA.18.170 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 18 :KKEKLIESL 2ahrA 168 :YIYLFIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8681 # 1p4xA.18.65 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 18 :KKEKLIESL 1p4xA 66 :DLVQHIKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8682 # 1ctf.18.17 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 18 :KKEKLIESL 1ctf 64 :NKVAVIKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8683 # 1ymtA.18.24 read from T0287.t2k.many.frag # found chain 1ymtA in training set T0287 18 :KKEKLIESL 1ymtA 241 :VRARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8684 # 1wu7A.18.193 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 18 :KKEKLIESL 1wu7A 194 :SREEFVDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8685 # 1yvrA.18.220 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 18 :KKEKLIESL 1yvrA 221 :ETEKVLKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8686 # 1m0wA.18.9 read from T0287.t2k.many.frag # found chain 1m0wA in training set T0287 18 :KKEKLIESL 1m0wA 10 :QLNELIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8687 # 1yiiA.18.32 read from T0287.t2k.many.frag # found chain 1yiiA in training set T0287 18 :KKEKLIESL 1yiiA 34 :DEETILKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8688 # 1dc1A.18.89 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 18 :KKEKLIESL 1dc1A 90 :DKKESINNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8689 # 1on2A.19.38 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 19 :KEKLIESLQ 1on2A 39 :VTKMVQKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8690 # 1uw4B.19.20 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 19 :KEKLIESLQ 1uw4B 788 :TEKVLRQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8691 # 1w8iA.19.59 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 19 :KEKLIESLQ 1w8iA 60 :ADKFLEGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8692 # 2d28C.19.6 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 19 :KEKLIESLQ 2d28C 7 :ETRIVEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8693 # 1r7jA.19.36 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 19 :KEKLIESLQ 1r7jA 37 :TGRYIKMLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8694 # 1r6xA.19.18 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 19 :KEKLIESLQ 1r6xA 20 :KNELLSEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8695 # 1lvaA.19.33 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 19 :KEKLIESLQ 1lvaA 410 :TRKLLQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8696 # 1szhA.19.23 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 19 :KEKLIESLQ 1szhA 38 :QECCIEIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8697 # 1aa7A.19.20 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 19 :KEKLIESLQ 1aa7A 21 :KAEIAQRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8698 # 1jr2A.19.142 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 19 :KEKLIESLQ 1jr2A 122 :AEKLAEYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8699 # 1ci4A.19.55 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 19 :KEKLIESLQ 1ci4A 56 :EDLFREWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8700 # 2ahrA.19.171 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 19 :KEKLIESLQ 2ahrA 169 :IYLFIEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8701 # 1i58A.19.104 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 19 :KEKLIESLQ 1i58A 456 :KEKIIRKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8702 # 1sflA.19.113 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 19 :KEKLIESLQ 1sflA 114 :HQRIITHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8703 # 1jkeA.19.41 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 19 :KEKLIESLQ 1jkeA 42 :ANRLCERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8704 # 2fnuA.19.297 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 19 :KEKLIESLQ 2fnuA 298 :KKLILESLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8705 # 1usyA.19.146 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 19 :KEKLIESLQ 1usyA 147 :HEKVLNLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=8706 # 1r71A.19.23 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1r71A)A140 T0287 20 :EKLIESLQ 1r71A 141 :DQVIENLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8707 # 1ctf.19.18 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 19 :KEKLIESLQ 1ctf 65 :KVAVIKAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8708 # 1otvA.19.203 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 19 :KEKLIESLQ 1otvA 204 :QNRMLEILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8709 # 1yovA.19.242 read from T0287.t2k.many.frag # found chain 1yovA in template set T0287 19 :KEKLIESLQ 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8710 # 1dc1A.19.90 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 19 :KEKLIESLQ 1dc1A 91 :KKESINNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8711 # 1wu7A.19.194 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 19 :KEKLIESLQ 1wu7A 195 :REEFVDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8712 # 1q52A.19.273 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 19 :KEKLIESLQ 1q52A 274 :GQQLFAGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8713 # 1s9rA.19.90 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 19 :KEKLIESLQ 1s9rA 91 :KDKLIEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8714 # 1p4xA.19.66 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 19 :KEKLIESLQ 1p4xA 67 :LVQHIKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8715 # 1qkrA.19.65 read from T0287.t2k.many.frag # found chain 1qkrA in training set T0287 19 :KEKLIESLQ 1qkrA 944 :KRALIQCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8716 # 2b0tA.19.90 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 19 :KEKLIESLQ 2b0tA 91 :LKAAIKELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8717 # 1kxu.19.145 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 19 :KEKLIESLQ 1kxu 136 :QEKALEQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8718 # 1ymtA.19.25 read from T0287.t2k.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)Q27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ymtA)Q259 T0287 19 :KEKLIESL 1ymtA 242 :RARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8719 # 1on2A.20.39 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 20 :EKLIESLQE 1on2A 40 :TKMVQKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8720 # 1uw4B.20.21 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 20 :EKLIESLQE 1uw4B 789 :EKVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8721 # 2d28C.20.7 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 20 :EKLIESLQE 2d28C 8 :TRIVEALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8722 # 1w8iA.20.60 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 20 :EKLIESLQE 1w8iA 61 :DKFLEGFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8723 # 1r7jA.20.37 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 20 :EKLIESLQE 1r7jA 38 :GRYIKMLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8724 # 2ahrA.20.172 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 20 :EKLIESLQE 2ahrA 170 :YLFIEALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8725 # 1i58A.20.105 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 20 :EKLIESLQE 1i58A 457 :EKIIRKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8726 # 1lvaA.20.34 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 20 :EKLIESLQE 1lvaA 411 :RKLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8727 # 1sflA.20.114 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 20 :EKLIESLQE 1sflA 115 :QRIITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8728 # 1r6xA.20.19 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 20 :EKLIESLQE 1r6xA 21 :NELLSEAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8729 # 1r71A.20.24 read from T0287.t2k.many.frag # found chain 1r71A in template set T0287 20 :EKLIESLQE 1r71A 141 :DQVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8730 # 1ci4A.20.56 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 20 :EKLIESLQE 1ci4A 57 :DLFREWLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8731 # 1szhA.20.24 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 20 :EKLIESLQE 1szhA 39 :ECCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8732 # 1aa7A.20.21 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 20 :EKLIESLQE 1aa7A 22 :AEIAQRLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=8733 # 1dc1A.20.91 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 20 :EKLIESLQE 1dc1A 92 :KESINNLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8734 # 2fnuA.20.298 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 20 :EKLIESLQE 2fnuA 299 :KLILESLHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8735 # 1jr2A.20.143 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 20 :EKLIESLQE 1jr2A 123 :EKLAEYICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8736 # 1jkeA.20.42 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 20 :EKLIESLQE 1jkeA 43 :NRLCERVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8737 # 1s9rA.20.91 read from T0287.t2k.many.frag # found chain 1s9rA in training set T0287 20 :EKLIESLQE 1s9rA 92 :DKLIEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8738 # 1ctf.20.19 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 20 :EKLIESLQE 1ctf 66 :VAVIKAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8739 # 2b0tA.20.91 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 20 :EKLIESLQE 2b0tA 92 :KAAIKELQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8740 # 1p4xA.20.67 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 20 :EKLIESLQE 1p4xA 68 :VQHIKVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8741 # 1kxu.20.146 read from T0287.t2k.many.frag # found chain 1kxu in template set T0287 20 :EKLIESLQE 1kxu 137 :EKALEQILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8742 # 1wu7A.20.195 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 20 :EKLIESLQE 1wu7A 196 :EEFVDQLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8743 # 1q52A.20.274 read from T0287.t2k.many.frag # found chain 1q52A in training set T0287 20 :EKLIESLQE 1q52A 275 :QQLFAGEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8744 # 1xg8A.20.66 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 20 :EKLIESLQE 1xg8A 58 :LQFIERIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8745 # 1oi7A.20.258 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 20 :EKLIESLQE 1oi7A 259 :ESKLRAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8746 # 1qvzA.20.81 read from T0287.t2k.many.frag # found chain 1qvzA in template set T0287 20 :EKLIESLQE 1qvzA 82 :NKTLAKIKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8747 # 1otvA.20.204 read from T0287.t2k.many.frag # found chain 1otvA in template set T0287 20 :EKLIESLQE 1otvA 205 :NRMLEILQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8748 # 1pu6A.20.48 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 20 :EKLIESLQE 1pu6A 49 :LKSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8749 # 2d28C.21.8 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 21 :KLIESLQEN 2d28C 9 :RIVEALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8750 # 1on2A.21.40 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N29 (1on2A)D49 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1on2A 41 :KMVQKLDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8751 # 1uw4B.21.22 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 21 :KLIESLQEN 1uw4B 790 :KVLRQMRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8752 # 1w8iA.21.61 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 21 :KLIESLQEN 1w8iA 62 :KFLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=8753 # 1r7jA.21.38 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 21 :KLIESLQEN 1r7jA 39 :RYIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8754 # 1r71A.21.25 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N29 (1r71A)N150 because L (left) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1r71A 142 :QVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=8755 # 1i58A.21.106 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 21 :KLIESLQEN 1i58A 458 :KIIRKAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8756 # 1sflA.21.115 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 21 :KLIESLQEN 1sflA 116 :RIITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8757 # 2ahrA.21.173 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 21 :KLIESLQEN 2ahrA 171 :LFIEALAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8758 # 1aa7A.21.22 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 21 :KLIESLQEN 1aa7A 23 :EIAQRLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8759 # 2fnuA.21.299 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 21 :KLIESLQEN 2fnuA 300 :LILESLHKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8760 # 1szhA.21.25 read from T0287.t2k.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)N29 (1szhA)G48 because L (left) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1szhA 40 :CCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=8761 # 1ci4A.21.57 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 21 :KLIESLQEN 1ci4A 58 :LFREWLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8762 # 1r6xA.21.20 read from T0287.t2k.many.frag # found chain 1r6xA in training set T0287 21 :KLIESLQEN 1r6xA 22 :ELLSEAQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8763 # 1pu6A.21.49 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1pu6A 50 :KSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=8764 # 1jkeA.21.43 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 21 :KLIESLQEN 1jkeA 44 :RLCERVLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8765 # 1sd4A.21.28 read from T0287.t2k.many.frag # found chain 1sd4A in template set T0287 21 :KLIESLQEN 1sd4A 29 :EIVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8766 # 1jr2A.21.144 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 21 :KLIESLQEN 1jr2A 124 :KLAEYICSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8767 # 1ctf.21.20 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 21 :KLIESLQEN 1ctf 67 :AVIKAVRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8768 # 1yj7A.21.48 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 21 :KLIESLQEN 1yj7A 68 :RAITILNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8769 # 2b0tA.21.92 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 21 :KLIESLQEN 2b0tA 93 :AAIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8770 # 1lvaA.21.35 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 21 :KLIESLQEN 1lvaA 412 :KLLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8771 # 1oi7A.21.259 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 21 :KLIESLQEN 1oi7A 260 :SKLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8772 # 1dc1A.21.92 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 21 :KLIESLQEN 1dc1A 93 :ESINNLIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8773 # 2bwbA.21.8 read from T0287.t2k.many.frag # found chain 2bwbA in template set T0287 21 :KLIESLQEN 2bwbA 334 :HQLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=8774 # 1qvzA.21.82 read from T0287.t2k.many.frag # found chain 1qvzA in template set T0287 21 :KLIESLQEN 1qvzA 83 :KTLAKIKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8775 # 1l0bA.21.75 read from T0287.t2k.many.frag # found chain 1l0bA in template set T0287 21 :KLIESLQEN 1l0bA 1664 :WVIKSIQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=8776 # 2tpt.21.5 read from T0287.t2k.many.frag # found chain 2tpt in template set T0287 21 :KLIESLQEN 2tpt 6 :EIIRKKRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8777 # 1uj8A.21.41 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 21 :KLIESLQEN 1uj8A 42 :DMHQWICDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8778 # 1jalA.21.141 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 21 :KLIESLQEN 1jalA 142 :RAIQRLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8779 # 2d28C.22.9 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2d28C 10 :IVEALLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=8780 # 1on2A.22.41 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1on2A 42 :MVQKLDKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=8781 # 1uw4B.22.23 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 22 :LIESLQENE 1uw4B 791 :VLRQMRKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8782 # 1i58A.22.107 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 22 :LIESLQENE 1i58A 459 :IIRKAIEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8783 # 1yj7A.22.49 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1yj7A 69 :AITILNNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=8784 # 1w8iA.22.62 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 22 :LIESLQENE 1w8iA 63 :FLEGFVESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8785 # 1l0bA.22.76 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)Q27 (1l0bA)Q1670 because G (3-10) conformation "forbidden" or filtered. T0287 22 :LIESL 1l0bA 1665 :VIKSI T0287 28 :ENE 1l0bA 1671 :ERK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8787 # 1r71A.22.26 read from T0287.t2k.many.frag # found chain 1r71A in template set T0287 22 :LIESLQENE 1r71A 143 :VIENLQRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8788 # 1r7jA.22.39 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 22 :LIESLQENE 1r7jA 40 :YIKMLMDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8789 # 1sd4A.22.29 read from T0287.t2k.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1sd4A 30 :IVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=8790 # 1sflA.22.116 read from T0287.t2k.many.frag # found chain 1sflA in template set T0287 22 :LIESLQENE 1sflA 117 :IITHLQQYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=8791 # 2ahrA.22.174 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 22 :LIESLQENE 2ahrA 172 :FIEALAKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8792 # 2fnuA.22.300 read from T0287.t2k.many.frag # found chain 2fnuA in template set T0287 22 :LIESLQENE 2fnuA 301 :ILESLHKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8793 # 1oi7A.22.260 read from T0287.t2k.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1oi7A 261 :KLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8794 # 1pu6A.22.50 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 22 :LIESLQENE 1pu6A 51 :SLENLKNAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8795 # 1ctf.22.21 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 22 :LIESLQENE 1ctf 68 :VIKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8796 # 2b0tA.22.93 read from T0287.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)E30 (2b0tA)G102 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2b0tA 94 :AIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=8797 # 1szhA.22.26 read from T0287.t2k.many.frag # found chain 1szhA in training set T0287 22 :LIESLQENE 1szhA 41 :CIEIMKFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8798 # 1ci4A.22.58 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 22 :LIESLQENE 1ci4A 59 :FREWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=8799 # 1r6xA.22.21 read from T0287.t2k.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)Q27 (1r6xA)Q28 because G (3-10) conformation "forbidden" or filtered. T0287 22 :LIESL 1r6xA 23 :LLSEA T0287 28 :ENE 1r6xA 29 :SSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8801 # 1aa7A.22.23 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 22 :LIESLQENE 1aa7A 24 :IAQRLEDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8802 # 2tpt.22.6 read from T0287.t2k.many.frag # found chain 2tpt in template set T0287 22 :LIESLQENE 2tpt 7 :IIRKKRDGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=8803 # 1jr2A.22.145 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 22 :LIESLQENE 1jr2A 125 :LAEYICSRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8804 # 1nuuA.22.222 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1nuuA 223 :VITYIKDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=8805 # 2cz1A.22.24 read from T0287.t2k.many.frag # found chain 2cz1A in template set T0287 22 :LIESLQENE 2cz1A 25 :LFRALDGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8806 # 2bwbA.22.9 read from T0287.t2k.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2bwbA 335 :QLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=8807 # 1lvaA.22.36 read from T0287.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)E30 (1lvaA)G421 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1lvaA 413 :LLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=8808 # 1uj8A.22.42 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 22 :LIESLQENE 1uj8A 43 :MHQWICDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8809 # 1jalA.22.142 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 22 :LIESLQENE 1jalA 143 :AIQRLQKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8810 # 1dc1A.22.93 read from T0287.t2k.many.frag # found chain 1dc1A in training set T0287 22 :LIESLQENE 1dc1A 94 :SINNLIENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8811 # 2d28C.23.10 read from T0287.t2k.many.frag # found chain 2d28C in template set T0287 23 :IESLQENEL 2d28C 11 :VEALLERRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8812 # 1uw4B.23.24 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 1uw4B 792 :LRQMRK T0287 30 :EL 1uw4B 799 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=8814 # 1on2A.23.42 read from T0287.t2k.many.frag # found chain 1on2A in training set T0287 23 :IESLQENEL 1on2A 43 :VQKLDKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8815 # 1i58A.23.108 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1i58A 460 :IRKAIEK T0287 31 :L 1i58A 468 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=8817 # 1yj7A.23.50 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1yj7A 70 :ITILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=8819 # 1l0bA.23.77 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1l0bA 1666 :IKSIQE T0287 30 :EL 1l0bA 1673 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8821 # 1w8iA.23.63 read from T0287.t2k.many.frag # found chain 1w8iA in template set T0287 23 :IESLQENEL 1w8iA 64 :LEGFVESGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8822 # 1r71A.23.27 read from T0287.t2k.many.frag # found chain 1r71A in template set T0287 23 :IESLQENEL 1r71A 144 :IENLQRNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8823 # 1sd4A.23.30 read from T0287.t2k.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)N29 (1sd4A)Y37 because G (3-10) conformation "forbidden" or filtered. T0287 23 :IESLQE 1sd4A 31 :VVEIQK T0287 30 :EL 1sd4A 38 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=8825 # 1nuuA.23.223 read from T0287.t2k.many.frag # found chain 1nuuA in template set T0287 23 :IESLQENEL 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8826 # 1pu6A.23.51 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 23 :IESLQENEL 1pu6A 52 :LENLKNAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8827 # 1oi7A.23.261 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 23 :IESLQENEL 1oi7A 262 :LRAFAEAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8828 # 2ahrA.23.175 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 23 :IESLQENEL 2ahrA 173 :IEALAKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8829 # 1uj8A.23.43 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 23 :IESLQENEL 1uj8A 44 :HQWICDLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=8830 # 1ctf.23.22 read from T0287.t2k.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQENE 1ctf 69 :IKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=8831 # 2bwbA.23.10 read from T0287.t2k.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2bwbA 336 :LRQLNDM T0287 31 :L 2bwbA 344 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=8833 # 1r7jA.23.40 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 23 :IESLQENEL 1r7jA 41 :IKMLMDLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8834 # 2cz1A.23.25 read from T0287.t2k.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2cz1A 26 :FRALDGK T0287 31 :L 2cz1A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=8836 # 1sflA.23.117 read from T0287.t2k.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)E30 (1sflA)N125 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1sflA 118 :ITHLQQY T0287 31 :L 1sflA 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8838 # 1ci4A.23.59 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQENE 1ci4A 60 :REWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 1 total=8839 # 1jalA.23.143 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 23 :IESLQENEL 1jalA 144 :IQRLQKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8840 # 2fnuA.23.301 read from T0287.t2k.many.frag # found chain 2fnuA in template set Warning: unaligning (T0287)N29 (2fnuA)R308 because G (3-10) conformation "forbidden" or filtered. T0287 23 :IESLQE 2fnuA 302 :LESLHK T0287 30 :EL 2fnuA 309 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=8842 # 1aa7A.23.24 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 23 :IESLQENEL 1aa7A 25 :AQRLEDVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8843 # 2hddA.23.18 read from T0287.t2k.many.frag # found chain 2hddA in template set T0287 23 :IESLQENEL 2hddA 17 :KREFNENRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=8844 # 2tpt.23.7 read from T0287.t2k.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 2tpt 8 :IRKKRD T0287 30 :EL 2tpt 15 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8846 # 1xg8A.23.69 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)N29 (1xg8A)D67 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1xg8A 61 :IERIEQ T0287 30 :EL 1xg8A 68 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8848 # 2ak3A.23.55 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 23 :IESLQENEL 2ak3A 55 :KTFIDQGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8849 # 1h5uA.23.741 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 23 :IESLQENEL 1h5uA 742 :IEQLSSGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8850 # 1k3xA.23.139 read from T0287.t2k.many.frag # found chain 1k3xA in training set T0287 23 :IESLQENEL 1k3xA 140 :KERLLSPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8851 # 1jkeA.23.45 read from T0287.t2k.many.frag # found chain 1jkeA in training set T0287 23 :IESLQENEL 1jkeA 46 :CERVLGYRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8852 # 2d28C.24.11 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2d28C 12 :EALLER T0287 31 :LL 2d28C 19 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8854 # 1i58A.24.109 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 24 :ESLQEN 1i58A 461 :RKAIEK T0287 31 :L 1i58A 468 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=8856 # 1uw4B.24.25 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 24 :ESLQENELL 1uw4B 793 :RQMRKLPWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8857 # 1yj7A.24.51 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1yj7A 71 :TILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=8859 # 1on2A.24.43 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1on2A 44 :QKLDKD T0287 31 :LL 1on2A 51 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8861 # 1l0bA.24.78 read from T0287.t2k.many.frag # found chain 1l0bA in template set T0287 24 :ESLQENELL 1l0bA 1667 :KSIQERKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8862 # 1oi7A.24.262 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 24 :ESLQENELL 1oi7A 263 :RAFAEAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8863 # 1pu6A.24.52 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQE 1pu6A 53 :ENLKN T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8865 # 1nuuA.24.224 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1nuuA 225 :TYIKDH T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=8867 # 2bwbA.24.11 read from T0287.t2k.many.frag # found chain 2bwbA in template set T0287 24 :ESLQENELL 2bwbA 337 :RQLNDMGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8868 # 1r71A.24.28 read from T0287.t2k.many.frag # found chain 1r71A in template set T0287 24 :ESLQENELL 1r71A 145 :ENLQRNELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8869 # 1whsA.24.196 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1whsA 190 :EFWWNH T0287 31 :LL 1whsA 197 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8871 # 1uj8A.24.44 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 24 :ESLQENELL 1uj8A 45 :QWICDLEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=8872 # 1w8iA.24.64 read from T0287.t2k.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1w8iA 65 :EGFVES T0287 31 :LL 1w8iA 72 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8874 # 1r7jA.24.41 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 24 :ESLQENELL 1r7jA 42 :KMLMDLEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=8875 # 1u20A.24.186 read from T0287.t2k.many.frag # found chain 1u20A in template set T0287 24 :ESLQENELL 1u20A 187 :YALRSLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8876 # 1ctf.24.23 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 24 :ESLQENELL 1ctf 70 :KAVRGATGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8877 # 1sd4A.24.31 read from T0287.t2k.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1sd4A)V40 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1sd4A 32 :VEIQKY T0287 31 :L 1sd4A 39 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=8879 # 1jalA.24.144 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 24 :ESLQENELL 1jalA 145 :QRLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=8880 # 2ak3A.24.56 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 24 :ESLQENELL 2ak3A 56 :TFIDQGKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8881 # 2cz1A.24.26 read from T0287.t2k.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2cz1A 27 :RALDGK T0287 31 :LL 2cz1A 34 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8883 # 2fnuA.24.302 read from T0287.t2k.many.frag # found chain 2fnuA in template set Warning: unaligning (T0287)E30 (2fnuA)G309 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2fnuA 303 :ESLHKR T0287 31 :LL 2fnuA 310 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8885 # 1ig0A.24.106 read from T0287.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0287)E30 (1ig0A)K113 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1ig0A 107 :KYYRKN T0287 31 :LL 1ig0A 114 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8887 # 2tpt.24.8 read from T0287.t2k.many.frag # found chain 2tpt in template set T0287 24 :ESLQENELL 2tpt 9 :RKKRDGHAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8888 # 1fiuA.24.13 read from T0287.t2k.many.frag # found chain 1fiuA in training set T0287 24 :ESLQENELL 1fiuA 14 :KKLLDGNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8889 # 2ahrA.24.176 read from T0287.t2k.many.frag # found chain 2ahrA in template set T0287 24 :ESLQENELL 2ahrA 174 :EALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8890 # 1h5uA.24.742 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 24 :ESLQENELL 1h5uA 743 :EQLSSGFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8891 # 1s7zA.24.20 read from T0287.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1s7zA 20 :ENIRYD T0287 31 :LL 1s7zA 27 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8893 # 1qvzA.24.85 read from T0287.t2k.many.frag # found chain 1qvzA in template set T0287 24 :ESLQENELL 1qvzA 86 :AKIKTPKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8894 # 1ci4A.24.60 read from T0287.t2k.many.frag # found chain 1ci4A in template set T0287 24 :ESLQENELL 1ci4A 61 :EWLKDTCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8895 # 2d28C.25.12 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 2d28C 13 :ALLER T0287 31 :LLN 2d28C 19 :RLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=8897 # 1i58A.25.110 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQEN 1i58A 462 :KAIEK T0287 31 :L 1i58A 468 :L T0287 33 :N 1i58A 470 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=8900 # 1whsA.25.197 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQE 1whsA 191 :FWWN T0287 31 :LLN 1whsA 197 :IVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8902 # 1nuuA.25.225 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1nuuA 226 :YIKDH T0287 31 :LLN 1nuuA 232 :LYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=8904 # 1oi7A.25.263 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 25 :SLQENELLN 1oi7A 264 :AFAEAGIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8905 # 1pu6A.25.53 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQE 1pu6A 54 :NLKN T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=8907 # 1yj7A.25.52 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 25 :SLQENEL 1yj7A 72 :ILNNNGF T0287 33 :N 1yj7A 80 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8909 # 1u20A.25.187 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1u20A 188 :ALRSL T0287 31 :LLN 1u20A 194 :LLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=8911 # 2bwbA.25.12 read from T0287.t2k.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 2bwbA 338 :QLNDM T0287 31 :LLN 2bwbA 344 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8913 # 1l0bA.25.79 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1l0bA)K1673 because E (beta_S) conformation "forbidden" or filtered. T0287 25 :SLQE 1l0bA 1668 :SIQE T0287 31 :LLN 1l0bA 1674 :LLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8915 # 1uw4B.25.26 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1uw4B)P799 because N (gamma') conformation "forbidden" or filtered. T0287 25 :SLQE 1uw4B 794 :QMRK T0287 31 :LLN 1uw4B 800 :WQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8917 # 1jalA.25.145 read from T0287.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENELL 1jalA 146 :RLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=8918 # 2ahrA.25.177 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 T0287 25 :SLQENELL 2ahrA 175 :ALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8919 # 1fzcA.25.18 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 25 :SLQENELLN 1fzcA 129 :KVQHIQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8920 # 1on2A.25.44 read from T0287.t2k.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N33 (1on2A)I53 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENELL 1on2A 45 :KLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8921 # 2ak3A.25.57 read from T0287.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQE 2ak3A 57 :FIDQ T0287 30 :ELLN 2ak3A 62 :KLIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=8923 # 1s7zA.25.21 read from T0287.t2k.many.frag # found chain 1s7zA in template set T0287 25 :SLQENELLN 1s7zA 21 :NIRYDDIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8924 # 1hynP.25.137 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 25 :SLQENELLN 1hynP 138 :RFIFEDQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=8925 # 1uj8A.25.45 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 25 :SLQENELLN 1uj8A 46 :WICDLEDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8926 # 1fiuA.25.14 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1fiuA 15 :KLLDG T0287 31 :LLN 1fiuA 21 :ILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=8928 # 1h5uA.25.743 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 25 :SLQENELLN 1h5uA 744 :QLSSGFFSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8929 # 2ao9A.25.33 read from T0287.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 25 :SLQENEL 2ao9A 34 :LLVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8930 # 1ctf.25.24 read from T0287.t2k.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENE 1ctf 71 :AVRGAT T0287 32 :LN 1ctf 78 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=8932 # 1vjrA.25.68 read from T0287.t2k.many.frag # found chain 1vjrA in template set T0287 25 :SLQENELLN 1vjrA 57 :KLRNMGVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=8933 # 1go3F.25.39 read from T0287.t2k.many.frag # found chain 1go3F in training set T0287 25 :SLQENELLN 1go3F 40 :YLQKFAKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8934 # 2hddA.25.20 read from T0287.t2k.many.frag # found chain 2hddA in template set Warning: unaligning (T0287)N33 (2hddA)T27 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQENELL 2hddA 19 :EFNENRYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8935 # 2tpt.25.9 read from T0287.t2k.many.frag # found chain 2tpt in template set T0287 25 :SLQENELLN 2tpt 10 :KKRDGHALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=8936 # 2cz1A.25.27 read from T0287.t2k.many.frag # found chain 2cz1A in template set T0287 25 :SLQENELLN 2cz1A 28 :ALDGKGLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=8937 # 1cy5A.25.27 read from T0287.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)N33 (1cy5A)T36 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQENELL 1cy5A 28 :HMISDGFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8938 # 2b8nA.25.227 read from T0287.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)E30 (2b8nA)G221 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 2b8nA 216 :VLEKY T0287 31 :LLN 2b8nA 222 :IET Number of specific fragments extracted= 2 number of extra gaps= 1 total=8940 # 1whsA.26.198 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. T0287 26 :LQE 1whsA 192 :WWN T0287 30 :ELLNT 1whsA 196 :GIVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8942 # 1i58A.26.111 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQEN 1i58A 463 :AIEK T0287 31 :L 1i58A 468 :L T0287 33 :NT 1i58A 470 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=8945 # 2d28C.26.13 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)N33 (2d28C)K21 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENELL 2d28C 14 :LLERRRL T0287 34 :T 2d28C 22 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=8947 # 1u20A.26.188 read from T0287.t2k.many.frag # found chain 1u20A in template set T0287 26 :LQENELLNT 1u20A 189 :LRSLKLLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8948 # 1pu6A.26.54 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1pu6A 55 :LKNA T0287 31 :LLNT 1pu6A 60 :ILEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=8950 # 1hynP.26.138 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 1hynP 139 :FIFE T0287 31 :LL 1hynP 144 :QI T0287 34 :T 1hynP 147 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=8953 # 1nuuA.26.226 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 26 :LQEN 1nuuA 227 :IKDH T0287 31 :LL 1nuuA 232 :LY Number of specific fragments extracted= 2 number of extra gaps= 2 total=8955 # 1fiuA.26.15 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQEN 1fiuA 16 :LLDG T0287 31 :LL 1fiuA 21 :IL T0287 34 :T 1fiuA 24 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=8958 # 1cy5A.26.28 read from T0287.t2k.many.frag # found chain 1cy5A in training set T0287 26 :LQENELLNT 1cy5A 29 :MISDGFLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8959 # 1l0bA.26.80 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQE 1l0bA 1669 :IQE T0287 30 :ELLNT 1l0bA 1673 :KLLSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=8961 # 2ahrA.26.178 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 26 :LQENELL 2ahrA 176 :LAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=8962 # 1yj7A.26.53 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 26 :LQEN 1yj7A 73 :LNNN T0287 31 :L 1yj7A 78 :F T0287 33 :NT 1yj7A 80 :KK Number of specific fragments extracted= 3 number of extra gaps= 2 total=8965 # 1oi7A.26.264 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 26 :LQENELLNT 1oi7A 265 :FAEAGIPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=8966 # 1fzcA.26.19 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 26 :LQENELLNT 1fzcA 130 :VQHIQLLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8967 # 2ak3A.26.58 read from T0287.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 26 :LQE 2ak3A 58 :IDQ T0287 30 :ELLNT 2ak3A 62 :KLIPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=8969 # 1jalA.26.146 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 26 :LQENELLNT 1jalA 147 :LQKRAKGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8970 # 1vfgA.26.177 read from T0287.t2k.many.frag # found chain 1vfgA in template set T0287 26 :LQENELLNT 1vfgA 178 :AVNLGLLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8971 # 2bwbA.26.13 read from T0287.t2k.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)N29 (2bwbA)M342 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2bwbA)D346 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQE 2bwbA 339 :LND T0287 30 :ELL 2bwbA 343 :GFF T0287 34 :T 2bwbA 347 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=8974 # 2etjA.26.211 read from T0287.t2k.many.frag # found chain 2etjA in template set T0287 26 :LQENELLNT 2etjA 200 :FFEKGLISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8975 # 1uj8A.26.46 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 26 :LQENELLNT 1uj8A 47 :ICDLEDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8976 # 2ao9A.26.34 read from T0287.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 26 :LQENEL 2ao9A 35 :LVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=8977 # 1s7zA.26.22 read from T0287.t2k.many.frag # found chain 1s7zA in template set T0287 26 :LQENELLNT 1s7zA 22 :IRYDDIRDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8978 # 1uw4B.26.27 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENELL 1uw4B 795 :MRKLPWQ T0287 34 :T 1uw4B 803 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=8980 # 1jg1A.26.27 read from T0287.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0287)E30 (1jg1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1jg1A 28 :LKAE T0287 31 :LLNT 1jg1A 33 :IIRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=8982 # 2tpt.26.10 read from T0287.t2k.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N33 (2tpt)S18 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENELL 2tpt 11 :KRDGHAL T0287 34 :T 2tpt 19 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=8984 # 1go3F.26.40 read from T0287.t2k.many.frag # found chain 1go3F in training set Warning: unaligning (T0287)L32 (1go3F)L47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1go3F)D48 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENEL 1go3F 41 :LQKFAK T0287 34 :T 1go3F 49 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=8986 # 1gqeA.26.40 read from T0287.t2k.many.frag # found chain 1gqeA in template set T0287 26 :LQENELLNT 1gqeA 41 :LEQPDVWNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=8987 # 1ctf.26.25 read from T0287.t2k.many.frag # found chain 1ctf in training set T0287 26 :LQENELLNT 1ctf 72 :VRGATGLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=8988 # 2d3dA.26.52 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)N29 (2d3dA)K491 because G (3-10) conformation "forbidden" or filtered. T0287 26 :LQE 2d3dA 488 :LEK T0287 30 :ELLNT 2d3dA 492 :GVLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=8990 # 1ci4A.26.62 read from T0287.t2k.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1ci4A)N70 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENE 1ci4A 63 :LKDTC T0287 32 :L 1ci4A 69 :A T0287 34 :T 1ci4A 71 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=8993 # 1whsA.27.199 read from T0287.t2k.many.frag # found chain 1whsA in template set T0287 27 :QENELLNTD 1whsA 193 :WNHGIVSDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=8994 # 1hynP.27.139 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 27 :QENELLNTD 1hynP 140 :IFEDQIRPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=8995 # 1u20A.27.189 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u20A 190 :RSL T0287 31 :LLNTD 1u20A 194 :LLRED Number of specific fragments extracted= 2 number of extra gaps= 1 total=8997 # 1pu6A.27.55 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 27 :QENELLNTD 1pu6A 56 :KNAFILEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=8998 # 1i58A.27.112 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QEN 1i58A 464 :IEK T0287 31 :L 1i58A 468 :L T0287 33 :NTD 1i58A 470 :DES Number of specific fragments extracted= 3 number of extra gaps= 2 total=9001 # 1cy5A.27.29 read from T0287.t2k.many.frag # found chain 1cy5A in training set T0287 27 :QENELLNTD 1cy5A 30 :ISDGFLTIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9002 # 2d28C.27.14 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 2d28C 15 :LER T0287 31 :LLNTD 2d28C 19 :RLKDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9004 # 1u3eM.27.100 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u3eM 101 :MSR T0287 31 :LLNTD 1u3eM 105 :TLNVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9006 # 1nuuA.27.227 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 27 :QENEL 1nuuA 228 :KDHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9007 # 2etjA.27.212 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 2etjA 201 :FEK T0287 31 :LLNTD 2etjA 205 :LISEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9009 # 1fzcA.27.20 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 27 :QENELLNTD 1fzcA 131 :QHIQLLQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9010 # 1fiuA.27.16 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QEN 1fiuA 17 :LDG T0287 31 :LL 1fiuA 21 :IL T0287 34 :TD 1fiuA 24 :TN Number of specific fragments extracted= 3 number of extra gaps= 2 total=9013 # 2d3dA.27.53 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QENELL 2d3dA 489 :EKKGVL T0287 34 :TD 2d3dA 496 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=9015 # 1kicA.27.102 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 27 :QENELLNTD 1kicA 91 :DDMPILNIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9016 # 2ahrA.27.179 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 27 :QENELL 2ahrA 177 :AKAGVK T0287 35 :D 2ahrA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=9018 # 1l0bA.27.81 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QE 1l0bA 1670 :QE T0287 30 :ELLNTD 1l0bA 1673 :KLLSVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=9020 # 2ak3A.27.59 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 27 :QENELLNTD 2ak3A 59 :DQGKLIPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9021 # 1vfgA.27.178 read from T0287.t2k.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1vfgA 179 :VNL T0287 31 :LLNTD 1vfgA 183 :LLKEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9023 # 1oi7A.27.265 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 27 :QENELLNTD 1oi7A 266 :AEAGIPVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9024 # 1qqfA.27.22 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 27 :QENELL 1qqfA 1032 :EQWEKF T0287 35 :D 1qqfA 1040 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=9026 # 1utg.27.42 read from T0287.t2k.many.frag # found chain 1utg in training set T0287 27 :QENELLNTD 1utg 43 :KVLDSLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9027 # 1uj8A.27.47 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 27 :QENELLNTD 1uj8A 48 :CDLEDFDDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9028 # 1qvzA.27.88 read from T0287.t2k.many.frag # found chain 1qvzA in template set Warning: unaligning (T0287)Q27 (1qvzA)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :ENELLNTD 1qvzA 90 :TPKEVNAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=9029 # 1jalA.27.147 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 27 :QENELLNTD 1jalA 148 :QKRAKGGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9030 # 1s7zA.27.23 read from T0287.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1s7zA 23 :RYD T0287 31 :LLNTD 1s7zA 27 :IRDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9032 # 1jg1A.27.28 read from T0287.t2k.many.frag # found chain 1jg1A in training set Warning: unaligning (T0287)E30 (1jg1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1jg1A 29 :KAE T0287 31 :LLNTD 1jg1A 33 :IIRSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9034 # 1m40A.27.168 read from T0287.t2k.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 27 :QENELLN 1m40A 194 :LTGELLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9035 # 2ao9A.27.35 read from T0287.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 27 :QENEL 2ao9A 36 :VENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9036 # 1gqeA.27.41 read from T0287.t2k.many.frag # found chain 1gqeA in template set Warning: unaligning (T0287)E28 (1gqeA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :Q 1gqeA 42 :E T0287 29 :NELLNTD 1gqeA 44 :PDVWNEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9038 # 1k3yA.27.105 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 T0287 27 :QENELLNT 1k3yA 107 :LLLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=9039 # 1whsA.28.200 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N33 (1whsA)S199 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :ENELL 1whsA 194 :NHGIV T0287 34 :TDE 1whsA 200 :DDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9041 # 1u20A.28.190 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1u20A 191 :SL T0287 31 :LLNTDE 1u20A 194 :LLREDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9043 # 1hynP.28.140 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1hynP 141 :FE T0287 31 :LL 1hynP 144 :QI T0287 34 :TDE 1hynP 147 :PQD Number of specific fragments extracted= 3 number of extra gaps= 2 total=9046 # 1pu6A.28.56 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :EN 1pu6A 57 :NA T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDE 1pu6A 63 :NDD Number of specific fragments extracted= 3 number of extra gaps= 2 total=9049 # 1u3eM.28.101 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 28 :ENELL 1u3eM 102 :SRGTL T0287 34 :TDE 1u3eM 108 :VSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9051 # 2d3dA.28.54 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 2d3dA 490 :KK T0287 31 :LLNTDE 2d3dA 493 :VLALGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9053 # 1i58A.28.113 read from T0287.t2k.many.frag # found chain 1i58A in training set T0287 28 :ENELLNTDE 1i58A 465 :EKGLIDESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9054 # 1k3yA.28.106 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 28 :ENELLNT 1k3yA 108 :LLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=9055 # 1cy5A.28.30 read from T0287.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1cy5A 31 :SD T0287 31 :LLNTDE 1cy5A 34 :FLTISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9057 # 1kicA.28.103 read from T0287.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0287)N33 (1kicA)N97 because G (3-10) conformation "forbidden" or filtered. T0287 28 :ENELL 1kicA 92 :DMPIL T0287 34 :TDE 1kicA 98 :IPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9059 # 1qqfA.28.23 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :DE 1qqfA 1040 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9061 # 2etjA.28.213 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2etjA)S207 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 2etjA 202 :EK T0287 31 :LL 2etjA 205 :LI T0287 34 :TDE 2etjA 208 :ENR Number of specific fragments extracted= 3 number of extra gaps= 2 total=9064 # 1fzcA.28.21 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 28 :ENELLNTDE 1fzcA 132 :HIQLLQKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9065 # 2ahrA.28.180 read from T0287.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 28 :ENELL 2ahrA 178 :KAGVK T0287 35 :DE 2ahrA 185 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9067 # 1rr7A.28.85 read from T0287.t2k.many.frag # found chain 1rr7A in template set T0287 28 :ENELLNTDE 1rr7A 86 :IWNDFNGRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9068 # 1cr1A.28.88 read from T0287.t2k.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)E30 (1cr1A)R361 because N (gamma') conformation "forbidden" or filtered. T0287 28 :EN 1cr1A 359 :RV T0287 31 :LLNTDE 1cr1A 362 :LRQSDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9070 # 1uw4B.28.29 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :E 1uw4B 797 :K T0287 30 :ELL 1uw4B 799 :PWQ T0287 34 :TDE 1uw4B 803 :QEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=9073 # 1utg.28.43 read from T0287.t2k.many.frag # found chain 1utg in training set T0287 28 :ENELLNTDE 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9074 # 1m40A.28.169 read from T0287.t2k.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)N29 (1m40A)G196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1m40A)T200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 28 :E 1m40A 195 :T T0287 30 :ELL 1m40A 197 :ELL T0287 36 :E 1m40A 203 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=9077 # 1vfgA.28.179 read from T0287.t2k.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)D35 (1vfgA)A187 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :ENELLNT 1vfgA 180 :NLGLLKE T0287 36 :E 1vfgA 188 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=9079 # 1gqeA.28.42 read from T0287.t2k.many.frag # found chain 1gqeA in template set Warning: unaligning (T0287)E28 (1gqeA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELLNTDE 1gqeA 44 :PDVWNEPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9080 # 2ak3A.28.60 read from T0287.t2k.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2ak3A)P65 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :E 2ak3A 60 :Q T0287 30 :ELL 2ak3A 62 :KLI T0287 34 :TDE 2ak3A 66 :DDV Number of specific fragments extracted= 3 number of extra gaps= 2 total=9083 # 2cwyA.28.25 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 28 :ENELLNTDE 2cwyA 26 :PYWLKATGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9084 # 1fiuA.28.17 read from T0287.t2k.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :EN 1fiuA 18 :DG T0287 31 :LL 1fiuA 21 :IL T0287 34 :TDE 1fiuA 24 :TNN Number of specific fragments extracted= 3 number of extra gaps= 2 total=9087 # 1jalA.28.148 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 28 :ENELLNTDE 1jalA 149 :KRAKGGDKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9088 # 1x2iA.28.17 read from T0287.t2k.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)E30 (1x2iA)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1x2iA 15 :GL T0287 31 :LLNTDE 1x2iA 18 :HVSATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9090 # 1s7zA.28.24 read from T0287.t2k.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1s7zA 24 :YD T0287 31 :LLNTDE 1s7zA 27 :IRDTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9092 # 1uj8A.28.48 read from T0287.t2k.many.frag # found chain 1uj8A in training set T0287 28 :ENELLNTDE 1uj8A 49 :DLEDFDDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9093 # 2d28C.28.15 read from T0287.t2k.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 2d28C 16 :ER T0287 31 :LLNTDE 2d28C 19 :RLKDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9095 # 1ix9A.28.58 read from T0287.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1ix9A)K59 T0287 29 :NELLNTDE 1ix9A 60 :LDQLPADK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9096 # 1whsA.29.201 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1whsA 195 :H T0287 31 :LLNTDEK 1whsA 197 :IVSDDTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9098 # 1hynP.29.141 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1hynP 142 :E T0287 31 :LLNTDEK 1hynP 144 :QIRPQDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9100 # 1pu6A.29.57 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 29 :N 1pu6A 58 :A T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEK 1pu6A 63 :NDDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=9103 # 1u20A.29.191 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u20A 192 :L T0287 31 :LLNTDEK 1u20A 194 :LLREDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=9105 # 1k3yA.29.107 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 29 :NELLNT 1k3yA 109 :LPVCPP T0287 37 :K 1k3yA 117 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=9107 # 1u3eM.29.102 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u3eM 103 :R T0287 31 :LLNTDEK 1u3eM 105 :TLNVSKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9109 # 2d3dA.29.55 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 29 :NELLNTDEK 2d3dA 491 :KGVLALGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9110 # 1cr1A.29.89 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 29 :NELLNTDEK 1cr1A 360 :VRLRQSDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9111 # 2cwyA.29.26 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 29 :NELLNTDEK 2cwyA 27 :YWLKATGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9112 # 1kicA.29.104 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 29 :NELLNTDEK 1kicA 93 :MPILNIPEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9113 # 1cy5A.29.31 read from T0287.t2k.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :N 1cy5A 32 :D T0287 31 :LLNTDEK 1cy5A 34 :FLTISEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9115 # 1vflA.29.330 read from T0287.t2k.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)N29 (1vflA)S329 because G (3-10) conformation "forbidden" or filtered. T0287 30 :ELLNTDEK 1vflA 330 :SFLPEDEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9116 # 1qqfA.29.24 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 29 :NELL 1qqfA 1034 :WEKF T0287 35 :DEK 1qqfA 1040 :EKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9118 # 1ix9A.29.59 read from T0287.t2k.many.frag # found chain 1ix9A in training set T0287 29 :NELLNTDEK 1ix9A 60 :LDQLPADKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9119 # 2etjA.29.214 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 29 :N 2etjA 203 :K T0287 31 :LLNTDEK 2etjA 205 :LISENRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=9121 # 1i58A.29.114 read from T0287.t2k.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1i58A)D470 because E (beta_S) conformation "forbidden" or filtered. T0287 29 :N 1i58A 466 :K T0287 31 :L 1i58A 468 :L T0287 34 :TDEK 1i58A 471 :ESKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=9124 # 1yrbA.29.180 read from T0287.t2k.many.frag # found chain 1yrbA in template set T0287 29 :NELLNTDEK 1yrbA 167 :VDLLSEEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9125 # 1d2tA.29.52 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 29 :NELLNTD 1d2tA 53 :RLLRNTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9126 # 1uptB.29.32 read from T0287.t2k.many.frag # found chain 1uptB in training set T0287 29 :NELLNTDEK 1uptB 2201 :VLKFPDDQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9127 # 1uw4B.29.30 read from T0287.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)E30 (1uw4B)P799 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1uw4B 798 :L T0287 31 :LL 1uw4B 800 :WQ T0287 34 :TDEK 1uw4B 803 :QEVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=9130 # 1f74A.29.50 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 29 :NELLNTDEK 1f74A 51 :NFMLSTEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9131 # 1rr7A.29.86 read from T0287.t2k.many.frag # found chain 1rr7A in template set T0287 29 :NELLNTDEK 1rr7A 87 :WNDFNGRNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9132 # 1m40A.29.170 read from T0287.t2k.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 29 :NELLN 1m40A 196 :GELLT T0287 36 :EK 1m40A 203 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9134 # 1fzcA.29.22 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 29 :NELLNTDEK 1fzcA 133 :IQLLQKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9135 # 1x2iA.29.18 read from T0287.t2k.many.frag # found chain 1x2iA in template set T0287 29 :NELLNTDEK 1x2iA 16 :LPHVSATLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9136 # 1u61A.29.64 read from T0287.t2k.many.frag # found chain 1u61A in template set Warning: unaligning (T0287)E30 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u61A 62 :T T0287 31 :LLNTDEK 1u61A 64 :FLTEEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9138 # 1y0nA.29.6 read from T0287.t2k.many.frag # found chain 1y0nA in template set T0287 29 :NELLNTDEK 1y0nA 5 :HDLLEADTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9139 # 1vfgA.29.180 read from T0287.t2k.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :N 1vfgA 181 :L T0287 31 :LLNTDEK 1vfgA 183 :LLKEAPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9141 # 1gqeA.29.43 read from T0287.t2k.many.frag # found chain 1gqeA in template set T0287 29 :NELLNTDEK 1gqeA 44 :PDVWNEPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=9142 # 1jalA.29.149 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 29 :NELLNTDEK 1jalA 150 :RAKGGDKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9143 # 1hynP.30.142 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1hynP 144 :QIRPQDRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9144 # 2cwyA.30.27 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 30 :ELLNTDEKK 2cwyA 28 :WLKATGEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=9145 # 1k3yA.30.108 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 30 :ELLNT 1k3yA 110 :PVCPP T0287 37 :KK 1k3yA 117 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9147 # 1whsA.30.202 read from T0287.t2k.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1whsA 197 :IVSDDTYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=9148 # 1u3eM.30.103 read from T0287.t2k.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1u3eM 105 :TLNVSKAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9149 # 1u20A.30.192 read from T0287.t2k.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1u20A 194 :LLREDQIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9150 # 1pu6A.30.58 read from T0287.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEKK 1pu6A 63 :NDDEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=9152 # 1cr1A.30.90 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 30 :ELLNTDEKK 1cr1A 361 :RLRQSDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9153 # 2d3dA.30.56 read from T0287.t2k.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 2d3dA 493 :VLALGARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=9154 # 1vflA.30.331 read from T0287.t2k.many.frag # found chain 1vflA in template set T0287 30 :ELLNTDEKK 1vflA 330 :SFLPEDEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9155 # 1qqfA.30.25 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 30 :ELL 1qqfA 1035 :EKF T0287 35 :DEKK 1qqfA 1040 :EKRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9157 # 1yrbA.30.181 read from T0287.t2k.many.frag # found chain 1yrbA in template set T0287 30 :ELLNTDEKK 1yrbA 168 :DLLSEEEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9158 # 1ix9A.30.60 read from T0287.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)N33 (1ix9A)P64 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1ix9A 61 :DQL T0287 34 :TDEKK 1ix9A 65 :ADKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9160 # 1kicA.30.105 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 30 :ELLNTDEKK 1kicA 94 :PILNIPENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9161 # 1uptB.30.33 read from T0287.t2k.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. T0287 30 :E 1uptB 2202 :L T0287 32 :LNTDEKK 1uptB 2204 :FPDDQTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9163 # 1d2tA.30.53 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 30 :ELLNTD 1d2tA 54 :LLRNTE T0287 38 :K 1d2tA 62 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=9165 # 1w33A.30.116 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 30 :ELLNTDEKK 1w33A 186 :ENLSQEESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9166 # 1f74A.30.51 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 30 :ELLNTDEKK 1f74A 52 :FMLSTEEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9167 # 1e9rA.30.195 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 30 :ELL 1e9rA 266 :LFA T0287 34 :TDEKK 1e9rA 270 :SNEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9169 # 1cy5A.30.32 read from T0287.t2k.many.frag # found chain 1cy5A in training set T0287 30 :ELLNTDEKK 1cy5A 33 :GFLTISEEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9170 # 1uw4B.30.31 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 30 :ELLNTDEKK 1uw4B 799 :PWQDQEVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9171 # 1jalA.30.150 read from T0287.t2k.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 30 :ELL 1jalA 151 :AKG T0287 34 :TDEKK 1jalA 155 :DKEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9173 # 1g73A.30.66 read from T0287.t2k.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)E30 (1g73A)G67 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1g73A 68 :KMNSEEED Number of specific fragments extracted= 1 number of extra gaps= 1 total=9174 # 1u7kA.30.60 read from T0287.t2k.many.frag # found chain 1u7kA in template set T0287 30 :ELLNTDEKK 1u7kA 61 :TLLTGEEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9175 # 1y0nA.30.7 read from T0287.t2k.many.frag # found chain 1y0nA in template set T0287 30 :ELLNTDEKK 1y0nA 6 :DLLEADTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9176 # 2etjA.30.215 read from T0287.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 2etjA 205 :LISENRFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9177 # 1uslA.30.138 read from T0287.t2k.many.frag # found chain 1uslA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1uslA)W132 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1uslA)W132 T0287 32 :LNTDEKK 1uslA 133 :SKAQRHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9178 # 1u84A.30.39 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 30 :ELLNTDEKK 1u84A 37 :AVYETEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9179 # 2ahmA.30.42 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 30 :ELLNTDEKK 2ahmA 43 :DILLAKDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9180 # 1ydiA.30.185 read from T0287.t2k.many.frag # found chain 1ydiA in template set T0287 30 :ELLNTDEKK 1ydiA 181 :ELTHQEHRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9181 # 2cwyA.31.28 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 31 :LLNTDEKKK 2cwyA 29 :LKATGEERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9182 # 1hynP.31.143 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 31 :LLNTDEKKK 1hynP 144 :QIRPQDREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9183 # 1k3yA.31.109 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 31 :LLNT 1k3yA 111 :VCPP T0287 37 :KKK 1k3yA 117 :KDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9185 # 2d3dA.31.57 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 31 :LLNTDEKKK 2d3dA 493 :VLALGARRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9186 # 1cr1A.31.91 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 31 :LLNTDEKKK 1cr1A 362 :LRQSDSLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9187 # 1qqfA.31.26 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 31 :LL 1qqfA 1036 :KF T0287 35 :DEKKK 1qqfA 1040 :EKRQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9189 # 1u3eM.31.104 read from T0287.t2k.many.frag # found chain 1u3eM in template set T0287 31 :LLNTDEKKK 1u3eM 105 :TLNVSKAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9190 # 1w33A.31.117 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 31 :LLNTDEKKK 1w33A 187 :NLSQEESKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9191 # 1whsA.31.203 read from T0287.t2k.many.frag # found chain 1whsA in template set T0287 31 :LLNTDEKKK 1whsA 197 :IVSDDTYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9192 # 1u20A.31.193 read from T0287.t2k.many.frag # found chain 1u20A in template set T0287 31 :LLNTDEKKK 1u20A 194 :LLREDQIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9193 # 1b4fA.31.53 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 31 :LLNTDEKKK 1b4fA 54 :VTLAGHQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9194 # 1vflA.31.332 read from T0287.t2k.many.frag # found chain 1vflA in template set T0287 31 :LLNTDEKKK 1vflA 331 :FLPEDEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9195 # 1uptB.31.34 read from T0287.t2k.many.frag # found chain 1uptB in training set T0287 31 :LLNTDEKKK 1uptB 2203 :KFPDDQTQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9196 # 1yrbA.31.182 read from T0287.t2k.many.frag # found chain 1yrbA in template set Warning: unaligning (T0287)N33 (1yrbA)S171 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1yrbA 169 :LL T0287 34 :TDEKKK 1yrbA 172 :EEEKER Number of specific fragments extracted= 2 number of extra gaps= 1 total=9198 # 1ix9A.31.61 read from T0287.t2k.many.frag # found chain 1ix9A in training set T0287 31 :LLNTDEKKK 1ix9A 62 :QLPADKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9199 # 1e9rA.31.196 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 31 :LLNTDEKKK 1e9rA 267 :FAGSNEASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9200 # 1u84A.31.40 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 31 :LLNTDEKKK 1u84A 38 :VYETEDART Number of specific fragments extracted= 1 number of extra gaps= 0 total=9201 # 1d2tA.31.54 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 31 :LLNTD 1d2tA 55 :LRNTE T0287 38 :KK 1d2tA 62 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9203 # 1pu6A.31.59 read from T0287.t2k.many.frag # found chain 1pu6A in training set T0287 31 :LLNTDEKKK 1pu6A 60 :ILENDDEIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9204 # 1g73A.31.67 read from T0287.t2k.many.frag # found chain 1g73A in template set T0287 31 :LLNTDEKKK 1g73A 68 :KMNSEEEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9205 # 1oi7A.31.269 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 31 :LLNTDEKKK 1oi7A 270 :IPVADTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9206 # 1u7kA.31.61 read from T0287.t2k.many.frag # found chain 1u7kA in template set Warning: unaligning (T0287)N33 (1u7kA)T64 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1u7kA 62 :LL T0287 34 :TDEKKK 1u7kA 65 :GEEKQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9208 # 1f74A.31.52 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 31 :LLNTDEKKK 1f74A 53 :MLSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9209 # 1uw4B.31.32 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 31 :LLNTDEKKK 1uw4B 800 :WQDQEVKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9210 # 1vpmA.31.141 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 31 :LLNTDEKKK 1vpmA 130 :EPQTEEEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9211 # 1jalA.31.151 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 31 :LLNTDEKKK 1jalA 152 :KGGDKEAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9212 # 1kicA.31.106 read from T0287.t2k.many.frag # found chain 1kicA in training set T0287 31 :LLNTDEKKK 1kicA 95 :ILNIPENVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9213 # 1no4A.31.17 read from T0287.t2k.many.frag # found chain 1no4A in template set T0287 31 :LLNTDEKKK 1no4A 19 :ELAQSERTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9214 # 2ahmA.31.43 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 31 :LLNTDEKKK 2ahmA 44 :ILLAKDTTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9215 # 1x2iA.31.20 read from T0287.t2k.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)L31 (1x2iA)H18 because T (delta_L) conformation "forbidden" or filtered. T0287 32 :LNTDEKKK 1x2iA 19 :VSATLARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=9216 # 2cwyA.32.29 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 2cwyA 30 :K T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKI 2cwyA 34 :EERRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=9219 # 1qqfA.32.27 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 32 :L 1qqfA 1037 :F T0287 35 :DEKKKI 1qqfA 1040 :EKRQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9221 # 1b4fA.32.54 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 32 :LNTDEKKKI 1b4fA 55 :TLAGHQKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9222 # 1cr1A.32.92 read from T0287.t2k.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)N33 (1cr1A)Q364 because G (3-10) conformation "forbidden" or filtered. T0287 32 :L 1cr1A 363 :R T0287 34 :TDEKKKI 1cr1A 365 :SDSLKRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9224 # 1k3yA.32.110 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 32 :LNT 1k3yA 112 :CPP T0287 37 :KKKI 1k3yA 117 :KDAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9226 # 2d3dA.32.58 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 32 :LNTDEKKKI 2d3dA 494 :LALGARRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9227 # 1w33A.32.118 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 32 :LNTDEKKKI 1w33A 188 :LSQEESKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9228 # 1uptB.32.35 read from T0287.t2k.many.frag # found chain 1uptB in training set T0287 32 :LNTDEKKKI 1uptB 2204 :FPDDQTQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9229 # 1u84A.32.41 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 32 :LNTDEKKKI 1u84A 39 :YETEDARTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9230 # 1hynP.32.144 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 32 :LNTDEKKKI 1hynP 145 :IRPQDREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9231 # 1vpmA.32.142 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 32 :LNTDEKKKI 1vpmA 131 :PQTEEEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9232 # 1s2xA.32.46 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 32 :LNTD 1s2xA 40 :KDSN T0287 39 :KI 1s2xA 47 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=9234 # 1vflA.32.333 read from T0287.t2k.many.frag # found chain 1vflA in template set T0287 32 :LNTDEKKKI 1vflA 332 :LPEDEKKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9235 # 1jalA.32.152 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 32 :LNTDEKKKI 1jalA 153 :GGDKEAKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9236 # 1d2tA.32.55 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 32 :LNTD 1d2tA 56 :RNTE T0287 38 :KKI 1d2tA 62 :KLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9238 # 1g73A.32.68 read from T0287.t2k.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)N33 (1g73A)N70 because E (beta_S) conformation "forbidden" or filtered. T0287 32 :L 1g73A 69 :M T0287 34 :TDEKKKI 1g73A 71 :SEEEDEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9240 # 2ex0A.32.247 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 32 :LNTDEKKKI 2ex0A 272 :GNTDVREYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9241 # 1oi7A.32.270 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 32 :LNTDEKKKI 1oi7A 271 :PVADTIDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9242 # 1u3eM.32.105 read from T0287.t2k.many.frag # found chain 1u3eM in template set T0287 32 :LNTDEKKKI 1u3eM 106 :LNVSKAQQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9243 # 1uw4B.32.33 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 32 :LNTDEKKKI 1uw4B 801 :QDQEVKDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9244 # 1ix9A.32.62 read from T0287.t2k.many.frag # found chain 1ix9A in training set T0287 32 :LNTDEKKKI 1ix9A 63 :LPADKKTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9245 # 1bo1A.32.251 read from T0287.t2k.many.frag # found chain 1bo1A in template set Warning: unaligning (T0287)N33 (1bo1A)G253 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 1bo1A 252 :V T0287 34 :TDEKKKI 1bo1A 254 :EESKKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=9247 # 1e9rA.32.197 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 32 :LNTDEKKKI 1e9rA 268 :AGSNEASKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9248 # 1yrbA.32.183 read from T0287.t2k.many.frag # found chain 1yrbA in template set Warning: unaligning (T0287)N33 (1yrbA)S171 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1yrbA 170 :L T0287 34 :TDEKKKI 1yrbA 172 :EEEKERH Number of specific fragments extracted= 2 number of extra gaps= 1 total=9250 # 1u7kA.32.62 read from T0287.t2k.many.frag # found chain 1u7kA in template set T0287 32 :LNTDEKKKI 1u7kA 63 :LTGEEKQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9251 # 1xsvA.32.24 read from T0287.t2k.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)N33 (1xsvA)L23 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1xsvA 22 :L T0287 34 :TDEKKKI 1xsvA 24 :TNKQRNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9253 # 1szqA.32.450 read from T0287.t2k.many.frag # found chain 1szqA in template set Warning: unaligning (T0287)N33 (1szqA)P452 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1szqA 451 :F T0287 34 :TDEKKKI 1szqA 453 :TRQQQRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=9255 # 1orjA.32.43 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)E1045 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKI 1orjA 1046 :LEKRKEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=9256 # 1u20A.32.194 read from T0287.t2k.many.frag # found chain 1u20A in template set T0287 32 :LNTDEKKKI 1u20A 195 :LREDQIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9257 # 2b0tA.32.111 read from T0287.t2k.many.frag # found chain 2b0tA in template set T0287 32 :LNTDEKKKI 2b0tA 112 :ATTDEEKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9258 # 2cwyA.33.30 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKII 2cwyA 34 :EERRLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=9260 # 1b4fA.33.55 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 33 :NTDEKKKII 1b4fA 56 :LAGHQKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9261 # 1qqfA.33.28 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKII 1qqfA 1040 :EKRQEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9262 # 1bo1A.33.252 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 33 :NTDEKKKII 1bo1A 253 :GEESKKNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9263 # 1u84A.33.42 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 33 :NTDEKKKII 1u84A 40 :ETEDARTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9264 # 1vpmA.33.143 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 33 :NTDEKKKII 1vpmA 132 :QTEEEKRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9265 # 1s2xA.33.47 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)N33 (1s2xA)D41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 34 :TD 1s2xA 42 :SN T0287 39 :KII 1s2xA 47 :DFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=9267 # 1w33A.33.119 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 33 :NTDEKKKII 1w33A 189 :SQEESKSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9268 # 2d3dA.33.59 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 33 :NTDEKKKII 2d3dA 495 :ALGARRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9269 # 1cr1A.33.93 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 33 :NTDEKKKII 1cr1A 364 :QSDSLKREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9270 # 1k3yA.33.111 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 33 :NT 1k3yA 113 :PP T0287 37 :KKKII 1k3yA 117 :KDAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9272 # 1uptB.33.36 read from T0287.t2k.many.frag # found chain 1uptB in training set T0287 33 :NTDEKKKII 1uptB 2205 :PDDQTQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9273 # 1orjA.33.44 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKII 1orjA 1046 :LEKRKEFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9274 # 1x2iA.33.22 read from T0287.t2k.many.frag # found chain 1x2iA in template set T0287 33 :NTDEKKKII 1x2iA 20 :SATLARRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9275 # 1g73A.33.69 read from T0287.t2k.many.frag # found chain 1g73A in template set T0287 33 :NTDEKKKII 1g73A 70 :NSEEEDEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9276 # 1hynP.33.145 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1hynP 147 :PQDREELL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9277 # 1jfmA.33.131 read from T0287.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0287)T34 (1jfmA)N133 because Y (epsilon') conformation "forbidden" or filtered. T0287 33 :N 1jfmA 132 :A T0287 35 :DEKKKII 1jfmA 134 :DESGVIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=9279 # 1jalA.33.153 read from T0287.t2k.many.frag # found chain 1jalA in template set T0287 33 :NTDEKKKII 1jalA 154 :GDKEAKFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9280 # 1uw4B.33.34 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 33 :NTDEKKKII 1uw4B 802 :DQEVKDYVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9281 # 1szqA.33.451 read from T0287.t2k.many.frag # found chain 1szqA in template set T0287 33 :NTDEKKKII 1szqA 452 :PTRQQQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9282 # 1zroA.33.416 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 33 :NTDEKKKII 1zroA 417 :NDLSNRKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9283 # 1y0nA.33.10 read from T0287.t2k.many.frag # found chain 1y0nA in template set Warning: unaligning (T0287)N33 (1y0nA)E9 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1y0nA 10 :ADTLNNLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9284 # 2ex0A.33.248 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 33 :NTDEKKKII 2ex0A 273 :NTDVREYYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9285 # 1u7kA.33.63 read from T0287.t2k.many.frag # found chain 1u7kA in template set Warning: unaligning (T0287)N33 (1u7kA)T64 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1u7kA 65 :GEEKQRVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9286 # 1ct5A.33.6 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 33 :NTDEKKKII 1ct5A 8 :DEDRKTQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9287 # 1oi7A.33.271 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 33 :NTDEKKKII 1oi7A 272 :VADTIDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9288 # 1ykhA.33.42 read from T0287.t2k.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1ykhA)P141 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKII 1ykhA 142 :DMYERKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9289 # 1vflA.33.334 read from T0287.t2k.many.frag # found chain 1vflA in template set T0287 33 :NTDEKKKII 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9290 # 1usyA.33.142 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 33 :NTDEKKKII 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9291 # 1d2tA.33.56 read from T0287.t2k.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 33 :NTD 1d2tA 57 :NTE T0287 38 :KKII 1d2tA 62 :KLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9293 # 2cwyA.34.31 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKIID 2cwyA 34 :EERRLLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9295 # 1s2xA.34.48 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 34 :TDE 1s2xA 42 :SND T0287 39 :KIID 1s2xA 47 :DFLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9297 # 1b4fA.34.56 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 34 :TDEKKKIID 1b4fA 57 :AGHQKKILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9298 # 1bo1A.34.253 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 34 :TDEKKKIID 1bo1A 254 :EESKKNFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9299 # 1qqfA.34.29 read from T0287.t2k.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKIID 1qqfA 1040 :EKRQEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9300 # 1vpmA.34.144 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 34 :TDEKKKIID 1vpmA 133 :TEEEKRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9301 # 1w33A.34.120 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 34 :TDEKKKIID 1w33A 190 :QEESKSLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9302 # 1u84A.34.43 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 34 :TDEKKKIID 1u84A 41 :TEDARTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9303 # 1jfmA.34.132 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 34 :TDEKKKIID 1jfmA 133 :NDESGVIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9304 # 1orjA.34.45 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 34 :TDEKKKIID 1orjA 1046 :LEKRKEFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9305 # 2d3dA.34.60 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 34 :TDEKKKIID 2d3dA 496 :LGARRKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9306 # 1qgoA.34.86 read from T0287.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0287)T34 (1qgoA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 35 :DEKKKIID 1qgoA 88 :DEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=9307 # 1oi7A.34.272 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 34 :TDEKKKIID 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9308 # 1vliA.34.265 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 34 :TDEKKKIID 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9309 # 1cr1A.34.94 read from T0287.t2k.many.frag # found chain 1cr1A in template set T0287 34 :TDEKKKIID 1cr1A 365 :SDSLKREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=9310 # 1ct5A.34.7 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 34 :TDEKKKIID 1ct5A 9 :EDRKTQLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9311 # 1yvrA.34.237 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 34 :TDEKKKIID 1yvrA 238 :TKDELEIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9312 # 1g73A.34.70 read from T0287.t2k.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 35 :DEKKKIID 1g73A 72 :EEEDEVWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9313 # 3fapB.34.22 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 34 :T 3fapB 130 :E T0287 36 :EKKKIID 3fapB 132 :NVKGMFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9315 # 1i60A.34.75 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 34 :TDEKKKIID 1i60A 76 :EKGHNEIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9316 # 1y0nA.34.11 read from T0287.t2k.many.frag # found chain 1y0nA in template set T0287 34 :TDEKKKIID 1y0nA 10 :ADTLNNLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9317 # 2jdxA.34.79 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 34 :TDEKKKIID 2jdxA 117 :KDHLKKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9318 # 1zroA.34.417 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 34 :TDEKKKIID 1zroA 418 :DLSNRKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9319 # 1x2iA.34.23 read from T0287.t2k.many.frag # found chain 1x2iA in template set T0287 34 :TDEKKKIID 1x2iA 21 :ATLARRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9320 # 1j5sA.34.216 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 34 :TDEKKKIID 1j5sA 205 :TSTLDGFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9321 # 1fzcA.34.27 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 34 :TDEKKKIID 1fzcA 138 :KNVRAQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9322 # 1ykhA.34.43 read from T0287.t2k.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKIID 1ykhA 142 :DMYERKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9323 # 2c5rA.34.35 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 34 :TDE 2c5rA 98 :LQS T0287 39 :KIID 2c5rA 103 :EVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9325 # 2f6kA.34.62 read from T0287.t2k.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)D35 (2f6kA)G64 because T (delta_L) conformation "forbidden" or filtered. T0287 34 :T 2f6kA 63 :F T0287 36 :EKKKIID 2f6kA 65 :DKAETIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9327 # 1y8aA.34.189 read from T0287.t2k.many.frag # found chain 1y8aA in training set T0287 34 :TDEKKKIID 1y8aA 168 :RSEVRKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9328 # 2cwyA.35.32 read from T0287.t2k.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 36 :EKKKIIDQ 2cwyA 34 :EERRLLQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=9329 # 1b4fA.35.57 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 35 :DEKKKIIDQ 1b4fA 58 :GHQKKILNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9330 # 1s2xA.35.49 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 35 :D 1s2xA 43 :N T0287 39 :KIIDQ 1s2xA 47 :DFLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9332 # 1bo1A.35.254 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 35 :DEKKKIIDQ 1bo1A 255 :ESKKNFLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9333 # 1w33A.35.121 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 35 :DEKKKIIDQ 1w33A 191 :EESKSLLMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9334 # 1jfmA.35.133 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 35 :DEKKKIIDQ 1jfmA 134 :DESGVIMNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9335 # 1qqfA.35.30 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 35 :DEKKKIIDQ 1qqfA 1040 :EKRQEALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9336 # 1qgoA.35.87 read from T0287.t2k.many.frag # found chain 1qgoA in template set T0287 35 :DEKKKIIDQ 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9337 # 2d3dA.35.61 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 35 :DEKKKIIDQ 2d3dA 497 :GARRKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9338 # 1vliA.35.266 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 35 :DEKKKIIDQ 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9339 # 1u84A.35.44 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 35 :DEKKKIIDQ 1u84A 42 :EDARTLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9340 # 1orjA.35.46 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 35 :DEKKKIIDQ 1orjA 1047 :EKRKEFVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9341 # 1oi7A.35.273 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 35 :DEKKKIIDQ 1oi7A 274 :DTIDEIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9342 # 1i60A.35.76 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 35 :DEKKKIIDQ 1i60A 77 :KGHNEIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9343 # 1vpmA.35.145 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 35 :DEKKKIIDQ 1vpmA 134 :EEEKRLYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=9344 # 3fapB.35.23 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9345 # 1yvrA.35.238 read from T0287.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)E36 (1yvrA)D240 because P (beta_P) conformation "forbidden" or filtered. T0287 35 :D 1yvrA 239 :K T0287 37 :KKKIIDQ 1yvrA 241 :ELEIIHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9347 # 2c5rA.35.36 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 35 :DE 2c5rA 99 :QS T0287 39 :KIIDQ 2c5rA 103 :EVLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9349 # 2jdxA.35.80 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 35 :DEKKKIIDQ 2jdxA 118 :DHLKKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9350 # 1fviA.35.102 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 35 :DEKKKIIDQ 1fviA 104 :DPLKKYIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9351 # 1ct5A.35.8 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 35 :DEKKKIIDQ 1ct5A 10 :DRKTQLIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9352 # 1zroA.35.418 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 35 :DEKKKIIDQ 1zroA 419 :LSNRKLVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9353 # 1j5sA.35.217 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 35 :DEKKKIIDQ 1j5sA 206 :STLDGFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9354 # 1fzcA.35.28 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 35 :DEKKKIIDQ 1fzcA 139 :NVRAQLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9355 # 1p4xA.35.98 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 35 :DEKKKIIDQ 1p4xA 99 :EQREKIAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=9356 # 1qf5A.35.180 read from T0287.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0287)D35 (1qf5A)V181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E36 (1qf5A)D182 because P (beta_P) conformation "forbidden" or filtered. T0287 37 :KKKIIDQ 1qf5A 183 :YQKVLDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=9357 # 1x2iA.35.24 read from T0287.t2k.many.frag # found chain 1x2iA in template set T0287 35 :DEKKKIIDQ 1x2iA 22 :TLARRLLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9358 # 1w2yA.35.123 read from T0287.t2k.many.frag # found chain 1w2yA in training set T0287 35 :DEKKKIIDQ 1w2yA 124 :GDIYGILND Number of specific fragments extracted= 1 number of extra gaps= 0 total=9359 # 256bA.35.20 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 35 :DEKKKIIDQ 256bA 21 :DNAAQVKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9360 # 1g73A.35.71 read from T0287.t2k.many.frag # found chain 1g73A in template set T0287 35 :DEKKKIIDQ 1g73A 72 :EEEDEVWQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9361 # 1b4fA.36.58 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 36 :EKKKIIDQI 1b4fA 59 :HQKKILNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9362 # 2cwyA.36.33 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 36 :EKKKIIDQI 2cwyA 34 :EERRLLQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9363 # 1s2xA.36.50 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQI 1s2xA 47 :DFLRRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9364 # 1w33A.36.122 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 36 :EKKKIIDQI 1w33A 192 :ESKSLLMQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9365 # 1vliA.36.267 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 36 :EKKKIIDQI 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9366 # 1bo1A.36.255 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 36 :EKKKIIDQI 1bo1A 256 :SKKNFLEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9367 # 1qqfA.36.31 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 36 :EKKKIIDQI 1qqfA 1041 :KRQEALELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9368 # 1qgoA.36.88 read from T0287.t2k.many.frag # found chain 1qgoA in template set T0287 36 :EKKKIIDQI 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9369 # 3fapB.36.24 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9370 # 1jfmA.36.134 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 36 :EKKKIIDQI 1jfmA 135 :ESGVIMNKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9371 # 1oi7A.36.274 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 36 :EKKKIIDQI 1oi7A 275 :TIDEIVELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9372 # 1i60A.36.77 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 36 :EKKKIIDQI 1i60A 78 :GHNEIITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9373 # 1qf5A.36.181 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 36 :EKKKIIDQI 1qf5A 182 :DYQKVLDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9374 # 1yvrA.36.239 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 36 :EKKKIIDQI 1yvrA 240 :DELEIIHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9375 # 1fviA.36.103 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 36 :EKKKIIDQI 1fviA 105 :PLKKYIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9376 # 1j5sA.36.218 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 36 :EKKKIIDQI 1j5sA 207 :TLDGFLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9377 # 2d3dA.36.62 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 36 :EKKKIIDQI 2d3dA 498 :ARRKLLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9378 # 1vpmA.36.146 read from T0287.t2k.many.frag # found chain 1vpmA in training set T0287 36 :EKKKIIDQI 1vpmA 135 :EEKRLYETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9379 # 1zroA.36.419 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 36 :EKKKIIDQI 1zroA 420 :SNRKLVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9380 # 1w2yA.36.124 read from T0287.t2k.many.frag # found chain 1w2yA in training set T0287 36 :EKKKIIDQI 1w2yA 125 :DIYGILNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9381 # 2jdxA.36.81 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 36 :EKKKIIDQI 2jdxA 119 :HLKKAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9382 # 2c5rA.36.37 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 36 :E 2c5rA 100 :S T0287 39 :KIIDQI 2c5rA 103 :EVLNYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=9384 # 1u84A.36.45 read from T0287.t2k.many.frag # found chain 1u84A in training set T0287 36 :EKKKIIDQI 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9385 # 1y8aA.36.191 read from T0287.t2k.many.frag # found chain 1y8aA in training set T0287 36 :EKKKIIDQI 1y8aA 170 :EVRKIVESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9386 # 1fzcA.36.29 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 36 :EKKKIIDQI 1fzcA 140 :VRAQLVDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9387 # 1orjA.36.47 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 36 :EKKKIIDQI 1orjA 1048 :KRKEFVENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9388 # 1nekA.36.478 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 36 :EKKKIIDQI 1nekA 479 :AMAKGLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9389 # 1ct5A.36.9 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 36 :EKKKIIDQI 1ct5A 11 :RKTQLIAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9390 # 1bkrA.36.90 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 36 :EKKKIIDQI 1bkrA 91 :DEKSIITYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9391 # 1go3F.36.50 read from T0287.t2k.many.frag # found chain 1go3F in training set T0287 36 :EKKKIIDQI 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9392 # 1b4fA.37.59 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 37 :KKKIIDQIK 1b4fA 60 :QKKILNSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9393 # 1w33A.37.123 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 37 :KKKIIDQIK 1w33A 193 :SKSLLMQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9394 # 1s2xA.37.51 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIK 1s2xA 47 :DFLRRVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=9395 # 2cwyA.37.34 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 37 :KKKIIDQIK 2cwyA 35 :ERRLLQGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9396 # 1vliA.37.268 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 37 :KKKIIDQIK 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9397 # 3fapB.37.25 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 T0287 37 :KKKIIDQ 3fapB 133 :VKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9398 # 1i60A.37.78 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 37 :KKKIIDQIK 1i60A 79 :HNEIITEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9399 # 1bo1A.37.256 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 37 :KKKIIDQIK 1bo1A 257 :KKNFLEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9400 # 1qf5A.37.182 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 37 :KKKIIDQIK 1qf5A 183 :YQKVLDDTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9401 # 1jfmA.37.135 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 37 :KKKIIDQIK 1jfmA 136 :SGVIMNKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9402 # 2c5rA.37.38 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIK 2c5rA 103 :EVLNYIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9403 # 1qgoA.37.89 read from T0287.t2k.many.frag # found chain 1qgoA in template set T0287 37 :KKKIIDQIK 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9404 # 1j5sA.37.219 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 37 :KKKIIDQIK 1j5sA 208 :LDGFLNALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9405 # 1qqfA.37.32 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 37 :KKKIIDQIK 1qqfA 1042 :RQEALELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9406 # 1fzcA.37.30 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 37 :KKKIIDQIK 1fzcA 141 :RAQLVDMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9407 # 1fviA.37.104 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 37 :KKKIIDQIK 1fviA 106 :LKKYIDRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9408 # 256bA.37.22 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 37 :KKKIIDQIK 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9409 # 1hx1B.37.19 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 37 :KKKIIDQIK 1hx1B 169 :VEKIADQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9410 # 2d3dA.37.63 read from T0287.t2k.many.frag # found chain 2d3dA in template set T0287 37 :KKKIIDQIK 2d3dA 499 :RRKLLKAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9411 # 1w2yA.37.125 read from T0287.t2k.many.frag # found chain 1w2yA in training set T0287 37 :KKKIIDQIK 1w2yA 126 :IYGILNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9412 # 1nekA.37.479 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 37 :KKKIIDQIK 1nekA 480 :MAKGLEQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9413 # 2jdxA.37.82 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 37 :KKKIIDQIK 2jdxA 120 :LKKAVAEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9414 # 1qoyA.37.180 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 37 :KKKIIDQIK 1qoyA 166 :FQSQVDKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9415 # 1orjA.37.48 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 37 :KKKIIDQIK 1orjA 1049 :RKEFVENID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9416 # 1nt2B.37.73 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 37 :KKKIIDQIK 1nt2B 85 :DRYVVALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9417 # 1p4xA.37.100 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 37 :KKKIIDQIK 1p4xA 101 :REKIAERVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9418 # 1bkrA.37.91 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 37 :KKKIIDQIK 1bkrA 92 :EKSIITYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9419 # 1zroA.37.420 read from T0287.t2k.many.frag # found chain 1zroA in template set T0287 37 :KKKIIDQIK 1zroA 421 :NRKLVGKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9420 # 1oi7A.37.275 read from T0287.t2k.many.frag # found chain 1oi7A in training set T0287 37 :KKKIIDQIK 1oi7A 276 :IDEIVELVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9421 # 1yvrA.37.240 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 37 :KKKIIDQIK 1yvrA 241 :ELEIIHLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9422 # 1b4fA.38.60 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 38 :KKIIDQIKT 1b4fA 61 :KKILNSIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9423 # 1w33A.38.124 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 38 :KKIIDQIKT 1w33A 194 :KSLLMQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9424 # 1i60A.38.79 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 38 :KKIIDQIKT 1i60A 80 :NEIITEFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9425 # 1s2xA.38.52 read from T0287.t2k.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIKT 1s2xA 47 :DFLRRVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9426 # 1qf5A.38.183 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 38 :KKIIDQIKT 1qf5A 184 :QKVLDDTMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9427 # 3fapB.38.26 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 T0287 38 :KKIIDQ 3fapB 134 :KGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9428 # 2cwyA.38.35 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 38 :KKIIDQIKT 2cwyA 36 :RRLLQGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9429 # 1vliA.38.269 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 38 :KKIIDQIKT 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9430 # 1hx1B.38.20 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 38 :KKIIDQIKT 1hx1B 170 :EKIADQLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9431 # 2c5rA.38.39 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIKT 2c5rA 103 :EVLNYIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=9432 # 1jfmA.38.136 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 38 :KKIIDQIKT 1jfmA 137 :GVIMNKWKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9433 # 1bo1A.38.257 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 38 :KKIIDQIKT 1bo1A 258 :KNFLEKLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9434 # 256bA.38.23 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 38 :KKIIDQIKT 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9435 # 1nt2B.38.74 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 38 :KKIIDQIKT 1nt2B 86 :RYVVALVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9436 # 1nekA.38.480 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 38 :KKIIDQIKT 1nekA 481 :AKGLEQLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9437 # 1qqfA.38.33 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 38 :KKIIDQIKT 1qqfA 1043 :QEALELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9438 # 1fzcA.38.31 read from T0287.t2k.many.frag # found chain 1fzcA in template set T0287 38 :KKIIDQIKT 1fzcA 142 :AQLVDMKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9439 # 1j5sA.38.220 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 38 :KKIIDQIKT 1j5sA 209 :DGFLNALWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9440 # 1r7jA.38.63 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 38 :KKIIDQIKT 1r7jA 64 :EELLEDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9441 # 1ofcX.38.165 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 38 :KKIIDQIKT 1ofcX 853 :ERIMGQIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=9442 # 1qoyA.38.181 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 38 :KKIIDQIKT 1qoyA 167 :QSQVDKIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9443 # 1ct5A.38.11 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 38 :KKIIDQIKT 1ct5A 13 :TQLIAQYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=9444 # 1bkrA.38.92 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 38 :KKIIDQIKT 1bkrA 93 :KSIITYVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9445 # 1e6iA.38.71 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 38 :KKIIDQIKT 1e6iA 390 :EDFIYDARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9446 # 1jqnA.38.28 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 38 :KKIIDQIKT 1jqnA 29 :EHILERVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=9447 # 1td6A.38.53 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 38 :KKIIDQIKT 1td6A 42 :TFFLHQFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9448 # 1fi4A.38.298 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 38 :KKIIDQIKT 1fi4A 279 :KRIISWCHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9449 # 1fviA.38.105 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 38 :KKIIDQIKT 1fviA 107 :KKYIDRVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=9450 # 1p4xA.38.101 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 38 :KKIIDQIKT 1p4xA 102 :EKIAERVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9451 # 1vls.38.56 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 38 :KKIIDQIKT 1vls 91 :QNAKTTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9452 # 1b4fA.39.61 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 39 :KIIDQIKTM 1b4fA 62 :KILNSIQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9453 # 1i60A.39.80 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 39 :KIIDQIKTM 1i60A 81 :EIITEFKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9454 # 3fapB.39.27 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 39 :KIIDQ 3fapB 135 :GMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9455 # 1s2xA.39.53 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 39 :KIIDQIKTM 1s2xA 47 :DFLRRVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9456 # 2c5rA.39.40 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 39 :KIIDQIKTM 2c5rA 103 :EVLNYIETQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9457 # 1w33A.39.125 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 39 :KIIDQIKTM 1w33A 195 :SLLMQIKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9458 # 256bA.39.24 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 39 :KIIDQIKTM 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9459 # 1hx1B.39.21 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 39 :KIIDQIKTM 1hx1B 171 :KIADQLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9460 # 1vliA.39.270 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 39 :KIIDQIKTM 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9461 # 1qf5A.39.184 read from T0287.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0287)M47 (1qf5A)V193 because G (3-10) conformation "forbidden" or filtered. T0287 39 :KIIDQIKT 1qf5A 185 :KVLDDTMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=9462 # 1nt2B.39.75 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 39 :KIIDQIKTM 1nt2B 87 :YVVALVKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9463 # 1bo1A.39.258 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 39 :KIIDQIKTM 1bo1A 259 :NFLEKLKRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9464 # 1jqnA.39.29 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 39 :KIIDQIKTM 1jqnA 30 :HILERVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9465 # 1td6A.39.54 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 39 :KIIDQIKTM 1td6A 43 :FFLHQFDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9466 # 1ofcX.39.166 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 39 :KIIDQIKTM 1ofcX 854 :RIMGQIERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9467 # 1e6iA.39.72 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 39 :KIIDQIKTM 1e6iA 391 :DFIYDARLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9468 # 1j5sA.39.221 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 39 :KIIDQIKTM 1j5sA 210 :GFLNALWKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9469 # 2jdxA.39.84 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 39 :KIIDQIKTM 2jdxA 122 :KAVAEIEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9470 # 1ct5A.39.12 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 39 :KIIDQIKTM 1ct5A 14 :QLIAQYESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9471 # 1jfmA.39.137 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 39 :KIIDQIKTM 1jfmA 138 :VIMNKWKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9472 # 2cwyA.39.36 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 39 :KIIDQIKTM 2cwyA 37 :RLLQGVILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9473 # 1qqfA.39.34 read from T0287.t2k.many.frag # found chain 1qqfA in training set T0287 39 :KIIDQIKTM 1qqfA 1044 :EALELIKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9474 # 1gw5S.39.78 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 39 :KIIDQIKTM 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9475 # 1bkrA.39.93 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 39 :KIIDQIKTM 1bkrA 94 :SIITYVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9476 # 1orjA.39.50 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 39 :KIIDQIKTM 1orjA 1051 :EFVENIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9477 # 1fviA.39.106 read from T0287.t2k.many.frag # found chain 1fviA in template set T0287 39 :KIIDQIKTM 1fviA 108 :KYIDRVEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9478 # 1r7jA.39.64 read from T0287.t2k.many.frag # found chain 1r7jA in training set T0287 39 :KIIDQIKTM 1r7jA 65 :ELLEDIRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9479 # 1p4xA.39.102 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 39 :KIIDQIKTM 1p4xA 103 :KIAERVTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9480 # 1vls.39.57 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 39 :KIIDQIKTM 1vls 92 :NAKTTLAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9481 # 1h05A.39.56 read from T0287.t2k.many.frag # found chain 1h05A in training set T0287 39 :KIIDQIKTM 1h05A 57 :QLLDWIHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9482 # 1i60A.40.81 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 40 :IIDQIKTMH 1i60A 82 :IITEFKGMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9483 # 1b4fA.40.62 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 40 :IIDQIKTMH 1b4fA 63 :ILNSIQVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9484 # 3fapB.40.28 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 40 :IIDQ 3fapB 136 :MFEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=9486 # 2c5rA.40.41 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 40 :IIDQIKTMH 2c5rA 104 :VLNYIETQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9487 # 256bA.40.25 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 40 :IIDQIKTMH 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9488 # 1nt2B.40.76 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 40 :IIDQIKTMH 1nt2B 88 :VVALVKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9489 # 1w33A.40.126 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 40 :IIDQIKTMH 1w33A 196 :LLMQIKSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9490 # 1s2xA.40.54 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 40 :IIDQIKTMH 1s2xA 48 :FLRRVQELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9491 # 1jqnA.40.30 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 40 :IIDQIKTMH 1jqnA 31 :ILERVETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9492 # 1hx1B.40.22 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 40 :IIDQIKTMH 1hx1B 172 :IADQLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9493 # 1e6iA.40.73 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 40 :IIDQIKTMH 1e6iA 392 :FIYDARLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9494 # 1td6A.40.55 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 40 :IIDQIKTMH 1td6A 44 :FLHQFDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9495 # 1gw5S.40.79 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 40 :IIDQIKTMH 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9496 # 1ofcX.40.167 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 40 :IIDQIKTMH 1ofcX 855 :IMGQIERGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9497 # 1orjA.40.51 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 40 :IIDQIKTMH 1orjA 1052 :FVENIDRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9498 # 1vls.40.58 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 40 :IIDQIKTMH 1vls 93 :AKTTLAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9499 # 1qf5A.40.185 read from T0287.t2k.many.frag # found chain 1qf5A in template set Warning: unaligning (T0287)M47 (1qf5A)V193 because G (3-10) conformation "forbidden" or filtered. T0287 40 :IIDQIKT 1qf5A 186 :VLDDTMA T0287 48 :H 1qf5A 194 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=9501 # 1vliA.40.271 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 40 :IIDQIKTMH 1vliA 260 :MVDGIRKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9502 # 1j5sA.40.222 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 40 :IIDQIKTMH 1j5sA 211 :FLNALWKSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9503 # 1bo1A.40.259 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 40 :IIDQIKTMH 1bo1A 260 :FLEKLKRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9504 # 1xlyA.40.49 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 40 :IIDQIKTMH 1xlyA 55 :LIKFVKKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9505 # 1bkrA.40.94 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 40 :IIDQIKTMH 1bkrA 95 :IITYVVTYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9506 # 1gqiA.40.614 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 40 :IIDQIKTMH 1gqiA 619 :GVEQVRAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9507 # 1nekA.40.482 read from T0287.t2k.many.frag # found chain 1nekA in template set T0287 40 :IIDQIKTMH 1nekA 483 :GLEQLKVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9508 # 1p4xA.40.103 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 40 :IIDQIKTMH 1p4xA 104 :IAERVTLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9509 # 1ct5A.40.13 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 40 :IIDQIKTMH 1ct5A 15 :LIAQYESVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9510 # 2jdxA.40.85 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 40 :IIDQIKTMH 2jdxA 123 :AVAEIEEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9511 # 1v74B.40.43 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 40 :IIDQIKTMH 1v74B 44 :ILNCGEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9512 # 1hulA.40.63 read from T0287.t2k.many.frag # found chain 1hulA in template set Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1hulA)L72 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1hulA)L72 T0287 40 :IID 1hulA 68 :LFK T0287 45 :KTMH 1hulA 73 :SLIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9514 # 2cwyA.40.37 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 40 :IIDQIKTMH 2cwyA 38 :LLQGVILLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9515 # 1i60A.41.82 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 41 :IDQIKTMHD 1i60A 83 :ITEFKGMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=9516 # 1b4fA.41.63 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 41 :IDQIKTMHD 1b4fA 64 :LNSIQVMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9517 # 2c5rA.41.42 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 41 :IDQIKTMHD 2c5rA 105 :LNYIETQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9518 # 3fapB.41.29 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 T0287 41 :IDQ 3fapB 137 :FEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=9520 # 1jqnA.41.31 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 41 :IDQIKTMHD 1jqnA 32 :LERVETIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9521 # 256bA.41.26 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 41 :IDQIKTMHD 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9522 # 1nt2B.41.77 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 41 :IDQIKTMHD 1nt2B 89 :VALVKALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9523 # 1s2xA.41.55 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 41 :IDQIKTMHD 1s2xA 49 :LRRVQELRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9524 # 1hx1B.41.23 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 41 :IDQIKTMHD 1hx1B 173 :ADQLEELNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9525 # 1bf5A.41.7 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 41 :IDQIKTMHD 1bf5A 143 :DSKVRNVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9526 # 1w33A.41.127 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 41 :IDQIKTMHD 1w33A 197 :LMQIKSNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9527 # 1gqiA.41.615 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 41 :IDQIKTMHD 1gqiA 620 :VEQVRAMQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9528 # 1e6iA.41.74 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 41 :IDQIKTMHD 1e6iA 393 :IYDARLVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9529 # 1td6A.41.56 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 41 :IDQIKTMHD 1td6A 45 :LHQFDKVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=9530 # 1ct5A.41.14 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 41 :IDQIKTMHD 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9531 # 1xlyA.41.50 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 41 :IDQIKTMHD 1xlyA 56 :IKFVKKLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9532 # 1gw5S.41.80 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 41 :IDQIKTMHD 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9533 # 2jdxA.41.86 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 41 :IDQIKTMHD 2jdxA 124 :VAEIEEMCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9534 # 1orjA.41.52 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 41 :IDQIKTMHD 1orjA 1053 :VENIDRVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9535 # 1bo1A.41.260 read from T0287.t2k.many.frag # found chain 1bo1A in template set T0287 41 :IDQIKTMHD 1bo1A 261 :LEKLKRDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9536 # 1vls.41.59 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 41 :IDQIKTMHD 1vls 94 :KTTLAQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9537 # 1vdkA.41.204 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 41 :IDQIKTMHD 1vdkA 205 :AAQLKTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9538 # 1yvhA.41.62 read from T0287.t2k.many.frag # found chain 1yvhA in template set T0287 41 :IDQIKTMHD 1yvhA 85 :LDLLPDTYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9539 # 1qf5A.41.186 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 41 :IDQIKTMHD 1qf5A 187 :LDDTMAVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9540 # 1bgf.41.80 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 41 :IDQIKTMHD 1bgf 80 :IHNLKRIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9541 # 1ofcX.41.168 read from T0287.t2k.many.frag # found chain 1ofcX in template set T0287 41 :IDQIKTMHD 1ofcX 856 :MGQIERGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9542 # 1v74B.41.44 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 41 :IDQIKTMHD 1v74B 45 :LNCGEELFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9543 # 1vliA.41.272 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 41 :IDQIKTMHD 1vliA 261 :VDGIRKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9544 # 1j5sA.41.223 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 41 :IDQIKTMHD 1j5sA 212 :LNALWKSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9545 # 2f6lA.41.40 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 41 :IDQIKTMHD 2f6lA 74 :EQQLAKLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9546 # 1i60A.42.83 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 42 :DQIKTMHDF 1i60A 84 :TEFKGMMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=9547 # 1b4fA.42.64 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 42 :DQIKTMHDF 1b4fA 65 :NSIQVMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9548 # 1nt2B.42.78 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 42 :DQIKTMHDF 1nt2B 90 :ALVKALEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9549 # 1jqnA.42.32 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 42 :DQIKTMHDF 1jqnA 33 :ERVETIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9550 # 3fapB.42.30 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)H48 (3fapB)H144 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 42 :DQ 3fapB 138 :EV Number of specific fragments extracted= 1 number of extra gaps= 1 total=9551 # 1bf5A.42.8 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 42 :DQIKTMHDF 1bf5A 144 :SKVRNVKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9552 # 2c5rA.42.43 read from T0287.t2k.many.frag # found chain 2c5rA in template set T0287 42 :DQIKTMHDF 2c5rA 106 :NYIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9553 # 256bA.42.27 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 42 :DQIKTMHDF 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9554 # 1gqiA.42.616 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 42 :DQIKTMHDF 1gqiA 621 :EQVRAMQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9555 # 1e6iA.42.75 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 42 :DQIKTMHDF 1e6iA 394 :YDARLVFNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9556 # 1s2xA.42.56 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 42 :DQIKTMHDF 1s2xA 50 :RRVQELRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9557 # 1hx1B.42.24 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 42 :DQIKTMHDF 1hx1B 174 :DQLEELNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9558 # 1xlyA.42.51 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 42 :DQIKTMHDF 1xlyA 57 :KFVKKLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9559 # 1orjA.42.53 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 42 :DQIKTMHDF 1orjA 1054 :ENIDRVYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9560 # 1td6A.42.57 read from T0287.t2k.many.frag # found chain 1td6A in template set T0287 42 :DQIKTMHDF 1td6A 46 :HQFDKVMEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9561 # 2f6lA.42.41 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 42 :DQIKTMHDF 2f6lA 75 :QQLAKLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=9562 # 1zupA.42.285 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE at template residue (1zupA)L274 T0287 43 :QIKTMHDF 1zupA 275 :PIQFLEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=9563 # 1v74B.42.45 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 42 :DQIKTMHDF 1v74B 46 :NCGEELFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9564 # 1ct5A.42.15 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 42 :DQIKTMHDF 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9565 # 1vdkA.42.205 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 42 :DQIKTMHDF 1vdkA 206 :AQLKTTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9566 # 1gw5S.42.81 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 42 :DQIKTMHDF 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9567 # 1fjgT.42.53 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 42 :DQIKTMHDF 1fjgT 54 :KIMRKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9568 # 1nogA.42.29 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 42 :DQIKTMHDF 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9569 # 1u0fA.42.219 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 42 :DQIKTMHDF 1u0fA 219 :TNAETAKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9570 # 1w33A.42.128 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 42 :DQIKTMHDF 1w33A 198 :MQIKSNLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9571 # 1kkoA.42.212 read from T0287.t2k.many.frag # found chain 1kkoA in training set T0287 42 :DQIKTMHDF 1kkoA 213 :EYVRWLSDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9572 # 1alu.42.118 read from T0287.t2k.many.frag # found chain 1alu in template set T0287 42 :DQIKTMHDF 1alu 117 :MSTKVLIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9573 # 1moq.42.194 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 42 :DQIKTMHDF 1moq 435 :HGLQALPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9574 # 1ail.42.37 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 42 :DQIKTMHDF 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9575 # 2acvA.42.430 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 42 :DQIKTMHDF 2acvA 431 :KKVQEMKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9576 # 1i60A.43.84 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 43 :QIKTMHDFF 1i60A 85 :EFKGMMETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9577 # 1nt2B.43.79 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 43 :QIKTMHDFF 1nt2B 91 :LVKALEEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9578 # 1jqnA.43.33 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 43 :QIKTMHDFF 1jqnA 34 :RVETIRKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9579 # 2c5rA.43.44 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 T0287 43 :QIKTMHDF 2c5rA 107 :YIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=9580 # 3fapB.43.31 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 43 :Q 3fapB 139 :V T0287 48 :H 3fapB 144 :H T0287 51 :F 3fapB 147 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=9583 # 1e6iA.43.76 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 43 :QIKTMHDFF 1e6iA 395 :DARLVFNNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9584 # 1gqiA.43.617 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 43 :QIKTMHDFF 1gqiA 622 :QVRAMQRTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9585 # 1bf5A.43.9 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 43 :QIKTMHDFF 1bf5A 145 :KVRNVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9586 # 1hx1B.43.25 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 43 :QIKTMHDFF 1hx1B 175 :QLEELNKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9587 # 1b4fA.43.65 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 43 :QIKTMHDFF 1b4fA 66 :SIQVMRAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9588 # 256bA.43.28 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 43 :QIKTMHDFF 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9589 # 1vdkA.43.206 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 43 :QIKTMHDFF 1vdkA 207 :QLKTTLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9590 # 1moq.43.195 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 43 :QIKTMHDFF 1moq 436 :GLQALPSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9591 # 1s2xA.43.57 read from T0287.t2k.many.frag # found chain 1s2xA in template set T0287 43 :QIKTMHDFF 1s2xA 51 :RVQELRINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9592 # 1zupA.43.286 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 43 :QIKTMHDFF 1zupA 275 :PIQFLEENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9593 # 1n1fA.43.117 read from T0287.t2k.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H48 (1n1fA)H123 because H (helix) conformation "forbidden" or filtered. T0287 43 :QIKTM 1n1fA 118 :ATRVI T0287 49 :DFF 1n1fA 124 :DNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9595 # 2acvA.43.431 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 43 :QIKTMHDFF 2acvA 432 :KVQEMKEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9596 # 1orjA.43.54 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 43 :QIKTMHDFF 1orjA 1055 :NIDRVYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=9597 # 2ahmA.43.13 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 43 :QIKTMHDFF 2ahmA 14 :TSVVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9598 # 1u0fA.43.220 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 43 :QIKTMHDFF 1u0fA 220 :NAETAKEWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9599 # 1ail.43.38 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 43 :QIKTMHDFF 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9600 # 1fjgT.43.54 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 43 :QIKTMHDFF 1fjgT 55 :IMRKAESLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9601 # 1ct5A.43.16 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 43 :QIKTMHDFF 1ct5A 18 :QYESVREVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9602 # 2etsA.43.22 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 43 :QIKTMHDFF 2etsA 11 :EVNNMQQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9603 # 1xlyA.43.52 read from T0287.t2k.many.frag # found chain 1xlyA in template set T0287 43 :QIKTMHDFF 1xlyA 58 :FVKKLRFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9604 # 1nogA.43.30 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 43 :QIKTMHDFF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9605 # 1vjxA.43.53 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 43 :QIKTMHDFF 1vjxA 42 :QERIHAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9606 # 2btoA.43.418 read from T0287.t2k.many.frag # found chain 2btoA in template set T0287 43 :QIKTMHDFF 2btoA 419 :SAQELVQSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9607 # 1v74B.43.46 read from T0287.t2k.many.frag # found chain 1v74B in template set T0287 43 :QIKTMHDFF 1v74B 47 :CGEELFMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9608 # 2cbiA.43.497 read from T0287.t2k.many.frag # found chain 2cbiA in template set T0287 43 :QIKTMHDFF 2cbiA 528 :EFARMEEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9609 # 1i60A.44.85 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 44 :IKTMHDFFK 1i60A 86 :FKGMMETCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9610 # 1bf5A.44.10 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 44 :IKTMHDFFK 1bf5A 146 :VRNVKDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9611 # 1jqnA.44.34 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 44 :IKTMHDFFK 1jqnA 35 :VETIRKLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9612 # 1nt2B.44.80 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 44 :IKTMHDFFK 1nt2B 92 :VKALEEIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9613 # 1e6iA.44.77 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 44 :IKTMHDFFK 1e6iA 396 :ARLVFNNCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9614 # 1orjA.44.55 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 44 :IKTMHDFFK 1orjA 1056 :IDRVYDIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9615 # 1moq.44.196 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 44 :IKTMHDFFK 1moq 437 :LQALPSRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9616 # 1zupA.44.287 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 44 :IKTMHDFFK 1zupA 276 :IQFLEENLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9617 # 1n1fA.44.118 read from T0287.t2k.many.frag # found chain 1n1fA in template set T0287 44 :IKTMHDFFK 1n1fA 119 :TRVIHDNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9618 # 1gqiA.44.618 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 44 :IKTMHDFFK 1gqiA 623 :VRAMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9619 # 3fapB.44.32 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FK 3fapB 147 :ME Number of specific fragments extracted= 2 number of extra gaps= 2 total=9621 # 2acvA.44.432 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 44 :IKTMHDFFK 2acvA 433 :VQEMKEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9622 # 1u0fA.44.221 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 44 :IKTMHDFFK 1u0fA 221 :AETAKEWFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9623 # 1fjgT.44.55 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 44 :IKTMHDFFK 1fjgT 56 :MRKAESLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9624 # 1ow4A.44.96 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 44 :IKTMHDFFK 1ow4A 86 :AKAVNDCAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9625 # 1ail.44.39 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 44 :IKTMHDFFK 1ail 40 :QKSLRGRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9626 # 1hx1B.44.26 read from T0287.t2k.many.frag # found chain 1hx1B in template set T0287 44 :IKTMHDFFK 1hx1B 176 :LEELNKELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9627 # 1nogA.44.31 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 44 :IKTMHDFFK 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9628 # 2etsA.44.23 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 44 :IKTMHDFFK 2etsA 12 :VNNMQQNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9629 # 2cbiA.44.498 read from T0287.t2k.many.frag # found chain 2cbiA in template set T0287 44 :IKTMHDFFK 2cbiA 529 :FARMEEACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9630 # 2c5rA.44.45 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 44 :IKTMHDF 2c5rA 108 :IETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=9631 # 1b4fA.44.66 read from T0287.t2k.many.frag # found chain 1b4fA in template set T0287 44 :IKTMHDFFK 1b4fA 67 :IQVMRAQMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9632 # 1kkoA.44.214 read from T0287.t2k.many.frag # found chain 1kkoA in training set T0287 44 :IKTMHDFFK 1kkoA 215 :VRWLSDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9633 # 256bA.44.29 read from T0287.t2k.many.frag # found chain 256bA in training set T0287 44 :IKTMHDFFK 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9634 # 1h6kA.44.546 read from T0287.t2k.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)M47 (1h6kA)F569 because G (3-10) conformation "forbidden" or filtered. T0287 44 :IKT 1h6kA 566 :LAK T0287 48 :HDFFK 1h6kA 570 :HEVFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9636 # 2ahmA.44.14 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 44 :IKTMHDFFK 2ahmA 15 :SVVLLSVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9637 # 1ct5A.44.17 read from T0287.t2k.many.frag # found chain 1ct5A in template set T0287 44 :IKTMHDFFK 1ct5A 19 :YESVREVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9638 # 1gw5S.44.83 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 44 :IKTMHDFFK 1gw5S 84 :IHNFVEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9639 # 2f6lA.44.43 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 44 :IKTMHDFFK 2f6lA 77 :LAKLGEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9640 # 1h5uA.44.734 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 44 :IKTMHDFFK 1h5uA 735 :IPELRQIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9641 # 1jqnA.45.35 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 45 :KTMHDFFKQ 1jqnA 36 :ETIRKLSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9642 # 1nt2B.45.81 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 45 :KTMHDFFKQ 1nt2B 93 :KALEEIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=9643 # 1orjA.45.56 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 45 :KTMHDFFKQ 1orjA 1057 :DRVYDIISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9644 # 1moq.45.197 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 45 :KTMHDFFKQ 1moq 438 :QALPSRIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9645 # 1u0fA.45.222 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 45 :KTMHDFFKQ 1u0fA 222 :ETAKEWFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9646 # 1zupA.45.288 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 45 :KTMHDFFKQ 1zupA 277 :QFLEENLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9647 # 1i60A.45.86 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 45 :KTMHDFFKQ 1i60A 87 :KGMMETCKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9648 # 1e6iA.45.78 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 45 :KTMHDFFKQ 1e6iA 397 :RLVFNNCRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9649 # 1bf5A.45.11 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 45 :KTMHDFFKQ 1bf5A 147 :RNVKDKVMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=9650 # 1ow4A.45.97 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 45 :KTMHDFFKQ 1ow4A 87 :KAVNDCANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9651 # 2acvA.45.433 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 45 :KTMHDFFKQ 2acvA 434 :QEMKEMSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9652 # 1n1fA.45.119 read from T0287.t2k.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H48 (1n1fA)H123 because H (helix) conformation "forbidden" or filtered. T0287 45 :KTM 1n1fA 120 :RVI T0287 49 :DFFKQ 1n1fA 124 :DNYDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9654 # 1ail.45.40 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 45 :KTMHDFFKQ 1ail 41 :KSLRGRGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=9655 # 1h6kA.45.547 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 45 :KTMHDFFKQ 1h6kA 567 :AKFHEVFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9656 # 2etsA.45.24 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 45 :KTMHDFFKQ 2etsA 13 :NNMQQNFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9657 # 1fjgT.45.56 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 45 :KTMHDFFKQ 1fjgT 57 :RKAESLIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9658 # 3fapB.45.33 read from T0287.t2k.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FKQ 3fapB 147 :MER Number of specific fragments extracted= 2 number of extra gaps= 2 total=9660 # 1vjxA.45.55 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 45 :KTMHDFFKQ 1vjxA 44 :RIHAEIFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9661 # 1h5uA.45.735 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 45 :KTMHDFFKQ 1h5uA 736 :PELRQIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9662 # 1p4xA.45.108 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 45 :KTMHDFFKQ 1p4xA 109 :TLFDQIIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9663 # 1jfmA.45.143 read from T0287.t2k.many.frag # found chain 1jfmA in template set T0287 45 :KTMHDFFKQ 1jfmA 144 :KDDGEFVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9664 # 1nogA.45.32 read from T0287.t2k.many.frag # found chain 1nogA in training set T0287 45 :KTMHDFFKQ 1nogA 33 :DELNSFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9665 # 1gqiA.45.619 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 45 :KTMHDFFKQ 1gqiA 624 :RAMQRTWDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9666 # 2ahmA.45.15 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 45 :KTMHDFFKQ 2ahmA 16 :VVLLSVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9667 # 1j5sA.45.227 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 45 :KTMHDFFKQ 1j5sA 216 :WKSHEHFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9668 # 2f6lA.45.44 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 45 :KTMHDFFKQ 2f6lA 78 :AKLGEDARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9669 # 1jeyA.45.518 read from T0287.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)K45 (1jeyA)G519 because S (epsilon) conformation "forbidden" or filtered. T0287 46 :TMHDFFKQ 1jeyA 520 :SLVDEFKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=9670 # 1gw5S.45.84 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 45 :KTMHDFFKQ 1gw5S 85 :HNFVEVLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9671 # 2c5rA.45.46 read from T0287.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 45 :KTMHDF 2c5rA 109 :ETQRTY T0287 53 :Q 2c5rA 117 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=9673 # 1vdkA.45.208 read from T0287.t2k.many.frag # found chain 1vdkA in training set T0287 45 :KTMHDFFKQ 1vdkA 209 :KTTLAAVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9674 # 1moq.46.198 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 46 :TMHDFFKQM 1moq 439 :ALPSRIEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9675 # 1zupA.46.289 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 46 :TMHDFFKQM 1zupA 278 :FLEENLSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9676 # 1orjA.46.57 read from T0287.t2k.many.frag # found chain 1orjA in template set T0287 46 :TMHDFFKQM 1orjA 1058 :RVYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9677 # 1u0fA.46.223 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 46 :TMHDFFKQM 1u0fA 223 :TAKEWFLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9678 # 1jqnA.46.36 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 46 :TMHDFFKQM 1jqnA 37 :TIRKLSKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9679 # 1ow4A.46.98 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 46 :TMHDFFKQM 1ow4A 88 :AVNDCANQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9680 # 1e6iA.46.79 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 46 :TMHDFFKQM 1e6iA 398 :LVFNNCRMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9681 # 1h6kA.46.548 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 46 :TMHDFFKQM 1h6kA 568 :KFHEVFKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9682 # 1bf5A.46.12 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 46 :TMHDFFKQM 1bf5A 148 :NVKDKVMCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9683 # 2acvA.46.434 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 46 :TMHDFFKQM 2acvA 435 :EMKEMSRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9684 # 1i60A.46.87 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 46 :TMHDFFKQM 1i60A 88 :GMMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9685 # 1n1fA.46.120 read from T0287.t2k.many.frag # found chain 1n1fA in template set T0287 46 :TMHDFFKQM 1n1fA 121 :VIHDNYDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9686 # 1ail.46.41 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 46 :TMHDFFKQM 1ail 42 :SLRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9687 # 1nt2B.46.82 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 46 :TMHDFFKQM 1nt2B 94 :ALEEIDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9688 # 1vjxA.46.56 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 46 :TMHDFFKQM 1vjxA 45 :IHAEIFRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9689 # 2etsA.46.25 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 46 :TMHDFFKQM 2etsA 14 :NMQQNFENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9690 # 1w33A.46.71 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 46 :TMHDFFKQM 1w33A 141 :KLKEILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9691 # 1jeyA.46.519 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 46 :TMHDFFKQM 1jeyA 520 :SLVDEFKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9692 # 1fjgT.46.57 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 46 :TMHDFFKQM 1fjgT 58 :KAESLIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9693 # 1alu.46.122 read from T0287.t2k.many.frag # found chain 1alu in template set T0287 46 :TMHDFFKQM 1alu 121 :VLIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9694 # 1gw5S.46.85 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 46 :TMHDFFKQM 1gw5S 86 :NFVEVLNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9695 # 1p4xA.46.109 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 46 :TMHDFFKQM 1p4xA 110 :LFDQIIKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9696 # 1h5uA.46.736 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 46 :TMHDFFKQM 1h5uA 737 :ELRQIIEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9697 # 2ahmA.46.16 read from T0287.t2k.many.frag # found chain 2ahmA in template set T0287 46 :TMHDFFKQM 2ahmA 17 :VLLSVLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9698 # 1gqiA.46.620 read from T0287.t2k.many.frag # found chain 1gqiA in training set T0287 46 :TMHDFFKQM 1gqiA 625 :AMQRTWDQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9699 # 1qlwA.46.267 read from T0287.t2k.many.frag # found chain 1qlwA in training set T0287 46 :TMHDFFKQM 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9700 # 2f6lA.46.45 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 46 :TMHDFFKQM 2f6lA 79 :KLGEDARSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9701 # 1j5sA.46.228 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 46 :TMHDFFKQM 1j5sA 217 :KSHEHFKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9702 # 1qf5A.46.191 read from T0287.t2k.many.frag # found chain 1qf5A in template set T0287 46 :TMHDFFKQM 1qf5A 192 :AVADILTSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9703 # 1r8iA.46.134 read from T0287.t2k.many.frag # found chain 1r8iA in template set T0287 46 :TMHDFFKQM 1r8iA 159 :DMQALTEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9704 # 1moq.47.199 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 47 :MHDFFKQMH 1moq 440 :LPSRIEQML Number of specific fragments extracted= 1 number of extra gaps= 0 total=9705 # 1u0fA.47.224 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 47 :MHDFFKQMH 1u0fA 224 :AKEWFLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9706 # 1ow4A.47.99 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 47 :MHDFFKQMH 1ow4A 89 :VNDCANQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9707 # 1zupA.47.290 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)M54 (1zupA)Y286 because G (3-10) conformation "forbidden" or filtered. T0287 47 :MHDFFKQ 1zupA 279 :LEENLSY T0287 55 :H 1zupA 287 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=9709 # 1e6iA.47.80 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 47 :MHDFFKQMH 1e6iA 399 :VFNNCRMYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9710 # 1jqnA.47.37 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 47 :MHDFFKQMH 1jqnA 38 :IRKLSKSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9711 # 1h6kA.47.549 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 47 :MHDFFKQMH 1h6kA 569 :FHEVFKTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9712 # 1w33A.47.72 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 47 :MHDFFKQMH 1w33A 142 :LKEILEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9713 # 2acvA.47.435 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 47 :MHDFFKQMH 2acvA 436 :MKEMSRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9714 # 1orjA.47.58 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 T0287 47 :MHDFFKQM 1orjA 1059 :VYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9715 # 1ail.47.42 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 47 :MHDFFKQMH 1ail 43 :LRGRGSTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9716 # 1nt2B.47.83 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 47 :MHDFFKQMH 1nt2B 95 :LEEIDESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9717 # 1vjxA.47.57 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 47 :MHDFFKQMH 1vjxA 46 :HAEIFRKMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9718 # 1jeyA.47.520 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 47 :MHDFFKQMH 1jeyA 521 :LVDEFKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9719 # 1n1fA.47.121 read from T0287.t2k.many.frag # found chain 1n1fA in template set T0287 47 :MHDFFKQMH 1n1fA 122 :IHDNYDQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9720 # 2f6lA.47.46 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 47 :MHDFFKQMH 2f6lA 80 :LGEDARSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9721 # 1bf5A.47.13 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 47 :MHDFFKQMH 1bf5A 149 :VKDKVMCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9722 # 1ajsA.47.311 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 47 :MHDFFKQMH 1ajsA 312 :DPELFHEWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9723 # 2etsA.47.26 read from T0287.t2k.many.frag # found chain 2etsA in template set T0287 47 :MHDFFKQMH 2etsA 15 :MQQNFENVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9724 # 1i60A.47.88 read from T0287.t2k.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)H55 (1i60A)G97 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1i60A 89 :MMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9725 # 1h5uA.47.737 read from T0287.t2k.many.frag # found chain 1h5uA in training set T0287 47 :MHDFFKQMH 1h5uA 738 :LRQIIEQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9726 # 1ei6A.47.220 read from T0287.t2k.many.frag # found chain 1ei6A in template set T0287 47 :MHDFFKQMH 1ei6A 222 :MDSYFKRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9727 # 1p4xA.47.110 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 47 :MHDFFKQMH 1p4xA 111 :FDQIIKQFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9728 # 1t98A.47.163 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 47 :MHDFFKQMH 1t98A 164 :VAEIFDSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=9729 # 1qlwA.47.268 read from T0287.t2k.many.frag # found chain 1qlwA in training set T0287 47 :MHDFFKQMH 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9730 # 1fjgT.47.58 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 47 :MHDFFKQMH 1fjgT 59 :AESLIDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9731 # 1alu.47.123 read from T0287.t2k.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 T0287 47 :MHDFFKQM 1alu 122 :LIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9732 # 1hz4A.47.219 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 47 :MHDFFKQMH 1hz4A 218 :VRVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9733 # 1r8iA.47.135 read from T0287.t2k.many.frag # found chain 1r8iA in template set T0287 47 :MHDFFKQMH 1r8iA 160 :MQALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9734 # 1wbeA.47.157 read from T0287.t2k.many.frag # found chain 1wbeA in template set T0287 47 :MHDFFKQMH 1wbeA 158 :KSDFLKALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9735 # 1moq.48.200 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 48 :HDFFKQMHT 1moq 441 :PSRIEQMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9736 # 1h6kA.48.550 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 48 :HDFFKQMHT 1h6kA 570 :HEVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9737 # 1ow4A.48.100 read from T0287.t2k.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1ow4A 90 :NDCANQVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=9738 # 1zupA.48.291 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 48 :HDFFKQMHT 1zupA 280 :EENLSYYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9739 # 1e6iA.48.81 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 48 :HDFFKQMHT 1e6iA 400 :FNNCRMYNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9740 # 1u0fA.48.225 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 48 :HDFFKQMHT 1u0fA 225 :KEWFLEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9741 # 2acvA.48.436 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 48 :HDFFKQMHT 2acvA 437 :KEMSRNAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9742 # 1jqnA.48.38 read from T0287.t2k.many.frag # found chain 1jqnA in template set T0287 48 :HDFFKQMHT 1jqnA 39 :RKLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9743 # 1w33A.48.73 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 48 :HDFFKQMHT 1w33A 143 :KEILEILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9744 # 1ail.48.43 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 48 :HDFFKQMHT 1ail 44 :RGRGSTLGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9745 # 1hz4A.48.220 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1hz4A 219 :RVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9746 # 2f6lA.48.47 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 2f6lA 81 :GEDARSQ T0287 56 :T 2f6lA 89 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=9748 # 1jeyA.48.521 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 48 :HDFFKQMHT 1jeyA 522 :VDEFKELVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9749 # 1vjxA.48.58 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 48 :HDFFKQMHT 1vjxA 47 :AEIFRKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9750 # 1ajsA.48.312 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 48 :HDFFKQMHT 1ajsA 313 :PELFHEWTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9751 # 1orjA.48.59 read from T0287.t2k.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)S1068 T0287 48 :HDFFKQM 1orjA 1060 :YDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=9752 # 1ei6A.48.221 read from T0287.t2k.many.frag # found chain 1ei6A in template set T0287 48 :HDFFKQMHT 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9753 # 1alu.48.124 read from T0287.t2k.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 T0287 48 :HDFFKQM 1alu 123 :IQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9754 # 1nt2B.48.84 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 48 :HDFFKQMHT 1nt2B 96 :EEIDESINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9755 # 1t98A.48.164 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 48 :HDFFKQMHT 1t98A 165 :AEIFDSIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9756 # 1wer.48.292 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 48 :HDFFKQMHT 1wer 1006 :SDELRTLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9757 # 1g5tA.48.108 read from T0287.t2k.many.frag # found chain 1g5tA in training set T0287 48 :HDFFKQMHT 1g5tA 109 :WQHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9758 # 1bf5A.48.14 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 48 :HDFFKQMHT 1bf5A 150 :KDKVMCIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9759 # 1nd4A.48.116 read from T0287.t2k.many.frag # found chain 1nd4A in template set T0287 48 :HDFFKQMHT 1nd4A 117 :ADAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9760 # 1zx4A.48.72 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1zx4A 214 :CAVGDEM T0287 56 :T 1zx4A 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=9762 # 1jixA.48.327 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 48 :HDFFKQMHT 1jixA 328 :HDILNKTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9763 # 1r8iA.48.136 read from T0287.t2k.many.frag # found chain 1r8iA in template set T0287 48 :HDFFKQMHT 1r8iA 161 :QALTEQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9764 # 1tukA.48.31 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 48 :HDFFKQMHT 1tukA 32 :QGCFCQYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9765 # 1p4xA.48.111 read from T0287.t2k.many.frag # found chain 1p4xA in template set T0287 48 :HDFFKQMHT 1p4xA 112 :DQIIKQFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9766 # 1fjgT.48.59 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 48 :HDFFKQMHT 1fjgT 60 :ESLIDKAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9767 # 1moq.49.201 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 49 :DFFKQMHTN 1moq 442 :SRIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9768 # 1h6kA.49.551 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 49 :DFFKQMHTN 1h6kA 571 :EVFKTLAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=9769 # 1e6iA.49.82 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 49 :DFFKQMHTN 1e6iA 401 :NNCRMYNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9770 # 1hz4A.49.221 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 49 :DFFKQMHTN 1hz4A 220 :VIYWQMTGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9771 # 1zupA.49.292 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)H55 (1zupA)L287 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1zupA 281 :ENLSYY T0287 56 :TN 1zupA 288 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9773 # 1ow4A.49.101 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 49 :DFFKQMHTN 1ow4A 91 :DCANQVNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9774 # 2acvA.49.437 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 49 :DFFKQMHTN 2acvA 438 :EMSRNAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9775 # 1ail.49.44 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 49 :DFFKQMHTN 1ail 45 :GRGSTLGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9776 # 2f6lA.49.48 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQM 2f6lA 82 :EDARSQ T0287 56 :T 2f6lA 89 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=9778 # 1zx4A.49.73 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1zx4A 215 :AVGDEMG T0287 57 :N 1zx4A 223 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=9780 # 1w33A.49.74 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 49 :DFFKQMHTN 1w33A 144 :EILEILKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9781 # 1jqnA.49.39 read from T0287.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1jqnA 40 :KLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=9782 # 1u0fA.49.226 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1u0fA 226 :EWFLEAA T0287 57 :N 1u0fA 234 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=9784 # 1sdiA.49.93 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1sdiA 94 :VLERKLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=9785 # 1nd4A.49.117 read from T0287.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0287)N57 (1nd4A)L126 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1nd4A 118 :DAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=9786 # 1wer.49.293 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 49 :DFFKQMHTN 1wer 1007 :DELRTLSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9787 # 1jeyA.49.522 read from T0287.t2k.many.frag # found chain 1jeyA in template set T0287 49 :DFFKQMHTN 1jeyA 523 :DEFKELVYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9788 # 1ajsA.49.313 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 49 :DFFKQMHTN 1ajsA 314 :ELFHEWTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9789 # 1r71A.49.56 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)M54 (1r71A)I178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 (1r71A)G179 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQ 1r71A 173 :DIAKE T0287 56 :TN 1r71A 180 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9791 # 1nt2B.49.85 read from T0287.t2k.many.frag # found chain 1nt2B in template set T0287 49 :DFFKQMHTN 1nt2B 97 :EIDESINML Number of specific fragments extracted= 1 number of extra gaps= 0 total=9792 # 1tukA.49.32 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 49 :DFFKQMHTN 1tukA 33 :GCFCQYAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9793 # 1alu.49.125 read from T0287.t2k.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1alu)L133 T0287 49 :DFFKQM 1alu 124 :QFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9794 # 1ei6A.49.222 read from T0287.t2k.many.frag # found chain 1ei6A in template set T0287 49 :DFFKQMHTN 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9795 # 1t98A.49.165 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 49 :DFFKQMHTN 1t98A 166 :EIFDSIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9796 # 1g5tA.49.109 read from T0287.t2k.many.frag # found chain 1g5tA in training set T0287 49 :DFFKQMHTN 1g5tA 110 :QHGKRMLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9797 # 1k78A.49.52 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1k78A 53 :DISRQL T0287 56 :TN 1k78A 60 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9799 # 1mgtA.49.113 read from T0287.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1mgtA 114 :DLAKAL T0287 56 :TN 1mgtA 121 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9801 # 1jixA.49.328 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 49 :DFFKQMHTN 1jixA 329 :DILNKTRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9802 # 1vjxA.49.59 read from T0287.t2k.many.frag # found chain 1vjxA in template set T0287 49 :DFFKQMHTN 1vjxA 48 :EIFRKMSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9803 # 1cr1A.49.109 read from T0287.t2k.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)N57 (1cr1A)N388 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1cr1A 380 :QWFDELFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=9804 # 1moq.50.202 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 50 :FFKQMHTNK 1moq 443 :RIEQMLSQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9805 # 1hz4A.50.222 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)H55 (1hz4A)T226 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1hz4A 221 :IYWQM T0287 57 :NK 1hz4A 228 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=9807 # 1e6iA.50.83 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 50 :FFKQMHTNK 1e6iA 402 :NCRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9808 # 1zupA.50.293 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)M54 (1zupA)Y286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQ 1zupA 282 :NLSY T0287 55 :HT 1zupA 287 :LT T0287 58 :K 1zupA 290 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=9811 # 2acvA.50.438 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 50 :FFKQMHTNK 2acvA 439 :MSRNAVVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9812 # 1ow4A.50.102 read from T0287.t2k.many.frag # found chain 1ow4A in training set T0287 50 :FFKQMHTNK 1ow4A 92 :CANQVNGAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9813 # 1h6kA.50.552 read from T0287.t2k.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H55 (1h6kA)A577 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1h6kA)S579 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQM 1h6kA 572 :VFKTL T0287 56 :T 1h6kA 578 :E T0287 58 :K 1h6kA 580 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=9816 # 2f6lA.50.49 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 50 :FFKQMHTNK 2f6lA 83 :DARSQHIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9817 # 1w33A.50.75 read from T0287.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1w33A 145 :ILEILKK T0287 58 :K 1w33A 153 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=9819 # 2cygA.50.57 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 50 :FFKQM 2cygA 86 :DVQSL T0287 57 :NK 2cygA 93 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9821 # 1zx4A.50.74 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1zx4A 216 :VGDEMG T0287 57 :NK 1zx4A 223 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=9823 # 1ail.50.45 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 50 :FFKQMHTNK 1ail 46 :RGSTLGLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9824 # 1sdiA.50.94 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 50 :FFKQMHTNK 1sdiA 95 :LERKLSSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9825 # 1wer.50.294 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1wer 1008 :ELRTLSN T0287 58 :K 1wer 1016 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=9827 # 1u0fA.50.227 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 50 :FFKQMHTNK 1u0fA 227 :WFLEAAKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9828 # 1z7lA.50.46 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 T0287 50 :FFKQMHTN 1z7lA 662 :NVNQYLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=9829 # 1jqnA.50.40 read from T0287.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1jqnA 41 :LSKSSRA T0287 58 :K 1jqnA 49 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=9831 # 1nd4A.50.118 read from T0287.t2k.many.frag # found chain 1nd4A in template set T0287 50 :FFKQMHTNK 1nd4A 119 :AMRRLHTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9832 # 1tukA.50.33 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 50 :FFKQMHTNK 1tukA 34 :CFCQYAKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9833 # 1jeyA.50.523 read from T0287.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)N57 (1jeyA)P531 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1jeyA 524 :EFKELVY T0287 58 :K 1jeyA 532 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=9835 # 1k78A.50.53 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQM 1k78A 54 :ISRQL T0287 56 :T 1k78A 60 :V T0287 58 :K 1k78A 62 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=9838 # 1tu9A.50.11 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 50 :FFKQMHTNK 1tu9A 10 :SYGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=9839 # 1j2zA.50.212 read from T0287.t2k.many.frag # found chain 1j2zA in template set T0287 50 :FFKQMHTNK 1j2zA 213 :LYKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9840 # 1sw5B.50.248 read from T0287.t2k.many.frag # found chain 1sw5B in template set T0287 50 :FFKQMHTNK 1sw5B 249 :LNYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9841 # 1r71A.50.57 read from T0287.t2k.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)H55 (1r71A)G179 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1r71A 174 :IAKEI T0287 56 :TNK 1r71A 180 :KSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9843 # 1jixA.50.329 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 50 :FFKQMHTNK 1jixA 330 :ILNKTRAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9844 # 1g5tA.50.110 read from T0287.t2k.many.frag # found chain 1g5tA in training set T0287 50 :FFKQMHTNK 1g5tA 111 :HGKRMLADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=9845 # 1ajsA.50.314 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 50 :FFKQMHTNK 1ajsA 315 :LFHEWTGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=9846 # 1mgtA.50.114 read from T0287.t2k.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1mgtA 115 :LAKAL T0287 56 :TNK 1mgtA 121 :TSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9848 # 2cwyA.50.47 read from T0287.t2k.many.frag # found chain 2cwyA in template set T0287 50 :FFKQMHTNK 2cwyA 48 :ALHQRRLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9849 # 1moq.51.203 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 51 :FKQMHTNKG 1moq 444 :IEQMLSQDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9850 # 1hz4A.51.223 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1hz4A 222 :YWQMT T0287 57 :NKG 1hz4A 228 :DKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9852 # 2cygA.51.58 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 51 :FKQM 2cygA 87 :VQSL T0287 57 :NKG 2cygA 93 :NPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=9854 # 1wer.51.295 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1wer 1009 :LRTLSN T0287 58 :KG 1wer 1016 :RG Number of specific fragments extracted= 2 number of extra gaps= 1 total=9856 # 1w33A.51.76 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 51 :FKQMHTNKG 1w33A 146 :LEILKKNSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9857 # 2acvA.51.439 read from T0287.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)G59 (2acvA)G448 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 2acvA 440 :SRNAVVDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=9858 # 1e6iA.51.84 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1e6iA 403 :CRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=9859 # 1sdiA.51.95 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 51 :FKQMHTNKG 1sdiA 96 :ERKLSSAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9860 # 1zupA.51.294 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)H55 (1zupA)L287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQM 1zupA 283 :LSYY T0287 56 :T 1zupA 288 :T T0287 58 :KG 1zupA 290 :KN Number of specific fragments extracted= 3 number of extra gaps= 2 total=9863 # 1z7lA.51.47 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)H55 (1z7lA)L667 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 51 :FKQM 1z7lA 663 :VNQY T0287 56 :T 1z7lA 668 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=9865 # 1ow4A.51.103 read from T0287.t2k.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMH 1ow4A 93 :ANQVN T0287 57 :NKG 1ow4A 99 :AYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=9867 # 1zx4A.51.75 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1zx4A 217 :GDEMG T0287 57 :NKG 1zx4A 223 :KNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9869 # 1u0fA.51.228 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 51 :FKQMHTNKG 1u0fA 228 :FLEAAKDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9870 # 1tu9A.51.12 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1tu9A 11 :YGRCCAS T0287 59 :G 1tu9A 19 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=9872 # 1he1A.51.86 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1he1A 181 :LQQWGTT T0287 59 :G 1he1A 189 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=9874 # 1h6kA.51.553 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 51 :FKQMHTNKG 1h6kA 573 :FKTLAESDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9875 # 2f6lA.51.50 read from T0287.t2k.many.frag # found chain 2f6lA in template set T0287 51 :FKQMHTNKG 2f6lA 84 :ARSQHIDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9876 # 1k78A.51.54 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 1k78A 55 :SRQL T0287 56 :TNKG 1k78A 60 :VSHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=9878 # 1j2zA.51.213 read from T0287.t2k.many.frag # found chain 1j2zA in template set Warning: unaligning (T0287)G59 (1j2zA)P222 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1j2zA 214 :YKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=9879 # 1q79A.51.347 read from T0287.t2k.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N57 (1q79A)S354 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1q79A)A356 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHT 1q79A 348 :TDEILL T0287 58 :K 1q79A 355 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=9881 # 1tukA.51.34 read from T0287.t2k.many.frag # found chain 1tukA in template set T0287 51 :FKQMHTNKG 1tukA 35 :FCQYAKDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=9882 # 1n69A.51.16 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)G59 (1n69A)T23 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1n69A 15 :QTAVRTNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=9883 # 1ail.51.46 read from T0287.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQM 1ail 47 :GSTL T0287 56 :T 1ail 52 :L T0287 58 :KG 1ail 54 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=9886 # 1ajsA.51.315 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 51 :FKQMHTNKG 1ajsA 316 :FHEWTGNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9887 # 2bmaA.51.35 read from T0287.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0287)N57 (2bmaA)N17 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHT 2bmaA 11 :VMKLDP T0287 58 :KG 2bmaA 18 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9889 # 1jqnA.51.41 read from T0287.t2k.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1jqnA 42 :SKSSRA T0287 58 :KG 1jqnA 49 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=9891 # 1sw5B.51.249 read from T0287.t2k.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)G59 (1sw5B)K258 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1sw5B 250 :NYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=9892 # 1jeyA.51.524 read from T0287.t2k.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)G59 (1jeyA)D533 because N (gamma') conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1jeyA 525 :FKELVYPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=9893 # 1z21A.51.62 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1z21A 100 :LQQFDSF T0287 59 :G 1z21A 108 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=9895 # 1jixA.51.330 read from T0287.t2k.many.frag # found chain 1jixA in training set Warning: unaligning (T0287)N57 (1jixA)K337 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1jixA 331 :LNKTRA T0287 58 :KG 1jixA 338 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9897 # 2cygA.52.59 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 52 :KQM 2cygA 88 :QSL T0287 57 :NKGA 2cygA 93 :NPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9899 # 1sdiA.52.96 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 52 :KQMHTNKGA 1sdiA 97 :RKLSSAKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9900 # 1hz4A.52.224 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 52 :KQMHTNKGA 1hz4A 223 :WQMTGDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9901 # 1wer.52.296 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 52 :KQMHTNKGA 1wer 1010 :RTLSNERGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9902 # 1zupA.52.295 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 52 :KQMHTNKGA 1zupA 284 :SYYLTDKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9903 # 1moq.52.204 read from T0287.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1moq 445 :EQMLSQD T0287 60 :A 1moq 453 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=9905 # 2acvA.52.440 read from T0287.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)N57 (2acvA)D446 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (2acvA)G448 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHT 2acvA 441 :RNAVV T0287 58 :K 2acvA 447 :G T0287 60 :A 2acvA 449 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=9908 # 1z7lA.52.48 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 52 :KQMHTN 1z7lA 664 :NQYLTD T0287 60 :A 1z7lA 672 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=9910 # 1w33A.52.77 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 52 :KQMHTNKGA 1w33A 147 :EILKKNSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=9911 # 1tu9A.52.13 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 52 :KQMHTNKGA 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9912 # 1e6iA.52.85 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)H55 (1e6iA)N407 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQM 1e6iA 404 :RMY T0287 56 :TNK 1e6iA 408 :GEN T0287 60 :A 1e6iA 412 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=9915 # 1he1A.52.87 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1he1A 182 :QQWGTT T0287 59 :GA 1he1A 189 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9917 # 1u0fA.52.229 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1u0fA 229 :LEAA T0287 57 :NKGA 1u0fA 234 :DPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9919 # 1zx4A.52.76 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1zx4A)K223 because E (beta_S) conformation "forbidden" or filtered. T0287 52 :KQMH 1zx4A 218 :DEMG T0287 58 :KGA 1zx4A 224 :NLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9921 # 1k78A.52.55 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 52 :KQM 1k78A 56 :RQL T0287 56 :TNK 1k78A 60 :VSH T0287 60 :A 1k78A 64 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=9924 # 1q79A.52.348 read from T0287.t2k.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)G59 (1q79A)A356 because Y (epsilon') conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1q79A 349 :DEILLSK T0287 60 :A 1q79A 357 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=9926 # 2f6lA.52.51 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 2f6lA 85 :RSQ T0287 56 :TNKGA 2f6lA 89 :IDPDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9928 # 1fipA.52.78 read from T0287.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQM 1fipA 79 :LMM T0287 56 :TNKGA 1fipA 83 :INRGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=9930 # 1sw5B.52.250 read from T0287.t2k.many.frag # found chain 1sw5B in template set T0287 52 :KQMHTNKGA 1sw5B 251 :YQYDVEKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9931 # 1w9cA.52.195 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 52 :KQMHTNKGA 1w9cA 902 :QNVAQEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9932 # 1y0zA.52.44 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 52 :KQMHTNKGA 1y0zA 45 :QTIKTQKHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9933 # 1n69A.52.17 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)G59 (1n69A)T23 because G (3-10) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1n69A 16 :TAVRTNS T0287 60 :A 1n69A 24 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=9935 # 1jixA.52.331 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 52 :KQMHTNKGA 1jixA 332 :NKTRAKKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=9936 # 1ykjA.52.368 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 52 :KQMHTNKGA 1ykjA 1369 :EYYLGSEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9937 # 2dpmA.52.71 read from T0287.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0287)N57 (2dpmA)N77 because D (zeta) conformation "forbidden" or filtered. T0287 52 :KQMHT 2dpmA 72 :QQIKD T0287 58 :KGA 2dpmA 78 :PQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=9939 # 1ail.52.47 read from T0287.t2k.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 1ail 48 :STL T0287 56 :TNKGA 1ail 52 :LNIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9941 # 2a6sA.52.13 read from T0287.t2k.many.frag # found chain 2a6sA in template set T0287 52 :KQMHTNKGA 2a6sA 14 :LYWQETDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=9942 # 1h6kA.52.554 read from T0287.t2k.many.frag # found chain 1h6kA in template set T0287 52 :KQMHTNKGA 1h6kA 574 :KTLAESDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9943 # 1ow4A.52.104 read from T0287.t2k.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)K58 (1ow4A)Y100 because D (zeta) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1ow4A 94 :NQVNGA T0287 59 :GA 1ow4A 101 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=9945 # 1t98A.52.168 read from T0287.t2k.many.frag # found chain 1t98A in template set T0287 52 :KQMHTNKGA 1t98A 169 :DSIDLTQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9946 # 1sdiA.53.97 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHTN 1sdiA 98 :KLSSA T0287 59 :GAL 1sdiA 104 :GAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9948 # 2cygA.53.60 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QM 2cygA 89 :SL T0287 58 :KGAL 2cygA 94 :PSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9950 # 1zupA.53.296 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 53 :QMHTNKGAL 1zupA 285 :YYLTDKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=9951 # 1wer.53.297 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHT 1wer 1011 :TLSN T0287 58 :KGAL 1wer 1016 :RGAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=9953 # 1hz4A.53.225 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 53 :QMHTNKGAL 1hz4A 224 :QMTGDKAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9954 # 1z7lA.53.49 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 53 :QMHTN 1z7lA 665 :QYLTD T0287 60 :AL 1z7lA 672 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9956 # 1tu9A.53.14 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 53 :QMHTNKGAL 1tu9A 13 :RCCASTGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=9957 # 2acvA.53.441 read from T0287.t2k.many.frag # found chain 2acvA in template set T0287 53 :QMHTNKGAL 2acvA 442 :NAVVDGGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9958 # 1moq.53.205 read from T0287.t2k.many.frag # found chain 1moq in training set T0287 53 :QMHTNKGAL 1moq 446 :QMLSQDKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9959 # 1w33A.53.78 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 53 :QMHTNKGAL 1w33A 148 :ILKKNSEHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=9960 # 1he1A.53.88 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QMHTN 1he1A 183 :QWGTT T0287 59 :GAL 1he1A 189 :GAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=9962 # 1zx4A.53.77 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1zx4A)K223 because E (beta_S) conformation "forbidden" or filtered. T0287 53 :QM 1zx4A 219 :EM T0287 56 :T 1zx4A 222 :N T0287 58 :KGAL 1zx4A 224 :NLEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=9965 # 1k78A.53.56 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 53 :QM 1k78A 57 :QL T0287 56 :TNK 1k78A 60 :VSH T0287 60 :AL 1k78A 64 :CV Number of specific fragments extracted= 3 number of extra gaps= 2 total=9968 # 2f6lA.53.52 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 53 :QM 2f6lA 86 :SQ T0287 56 :TNKGAL 2f6lA 89 :IDPDYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9970 # 1e6iA.53.86 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHTNK 1e6iA 405 :MYNGEN T0287 60 :AL 1e6iA 412 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=9972 # 1u0fA.53.230 read from T0287.t2k.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1u0fA 230 :EAA T0287 57 :NKGAL 1u0fA 234 :DPSAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9974 # 1ykjA.53.369 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 53 :QMHTNKGAL 1ykjA 1370 :YYLGSEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9975 # 1y0zA.53.45 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 53 :QMHTNKGAL 1y0zA 46 :TIKTQKHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9976 # 1urjA.53.604 read from T0287.t2k.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)T56 (1urjA)T608 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMH 1urjA 605 :TII T0287 57 :NKGAL 1urjA 609 :NREAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9978 # 2bnxA.53.245 read from T0287.t2k.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)G59 (2bnxA)G382 because H (helix) conformation "forbidden" or filtered. T0287 53 :QMHTNK 2bnxA 376 :MEMDDF T0287 60 :AL 2bnxA 383 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=9980 # 1w9cA.53.196 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 53 :QMHTNKGAL 1w9cA 903 :NVAQEEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=9981 # 1q79A.53.349 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 53 :QMHTNKGAL 1q79A 350 :EILLSKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9982 # 1fipA.53.79 read from T0287.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QM 1fipA 80 :MM T0287 56 :TNKGAL 1fipA 83 :INRGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9984 # 1tffA.53.119 read from T0287.t2k.many.frag # found chain 1tffA in template set T0287 53 :QMHTNKGAL 1tffA 120 :KVFNDQSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=9985 # 1jixA.53.332 read from T0287.t2k.many.frag # found chain 1jixA in training set T0287 53 :QMHTNKGAL 1jixA 333 :KTRAKKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=9986 # 1dk0A.53.138 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 53 :QMHTNKGAL 1dk0A 139 :LMSGDTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=9987 # 1tzvA.53.52 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 53 :QMHTNKGAL 1tzvA 53 :GIKENLSMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=9988 # 1b25A.53.375 read from T0287.t2k.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)N57 (1b25A)R380 because L (left) conformation "forbidden" or filtered. T0287 53 :QMHT 1b25A 376 :DIAY T0287 58 :KGAL 1b25A 381 :KGEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9990 # 2dpmA.53.72 read from T0287.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0287)N57 (2dpmA)N77 because D (zeta) conformation "forbidden" or filtered. T0287 53 :QMHT 2dpmA 73 :QIKD T0287 58 :KGAL 2dpmA 78 :PQEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9992 # 1z21A.53.64 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 53 :QMHTN 1z21A 102 :QFDSF T0287 59 :GAL 1z21A 108 :KRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=9994 # 1sdiA.54.98 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 54 :MHTNKGALD 1sdiA 99 :LSSAKGALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=9995 # 2cygA.54.61 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 54 :M 2cygA 90 :L T0287 57 :NKGALD 2cygA 93 :NPSAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=9997 # 1zupA.54.297 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 54 :MHTNKGALD 1zupA 286 :YLTDKNYMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=9998 # 1wer.54.298 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 54 :MHTNKGALD 1wer 1012 :LSNERGAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=9999 # 1tu9A.54.15 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 54 :MHTNKGALD 1tu9A 14 :CCASTGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10000 # 1z7lA.54.50 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 54 :MHTN 1z7lA 666 :YLTD T0287 60 :ALD 1z7lA 672 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10002 # 1hz4A.54.226 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1hz4A 225 :MT T0287 57 :NKGALD 1hz4A 228 :DKAAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10004 # 1zx4A.54.78 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1zx4A 220 :MG T0287 57 :NKGALD 1zx4A 223 :KNLEFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10006 # 1k78A.54.57 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1k78A 58 :L T0287 56 :TNKGALD 1k78A 60 :VSHGCVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10008 # 1dk0A.54.139 read from T0287.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1dk0A 140 :MS T0287 57 :NKGALD 1dk0A 143 :DTGALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10010 # 2acvA.54.442 read from T0287.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :MHTN 2acvA 443 :AVVD T0287 59 :GALD 2acvA 448 :GSSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10012 # 1he1A.54.89 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :MHTN 1he1A 184 :WGTT T0287 59 :GALD 1he1A 189 :GAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10014 # 2f6lA.54.53 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)M54 (2f6lA)Q87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 2f6lA 88 :HI T0287 58 :KGALD 2f6lA 91 :PDYVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=10016 # 1w33A.54.79 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 54 :MHTNKGALD 1w33A 149 :LKKNSEHYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10017 # 1zs4A.54.33 read from T0287.t2k.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)H55 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1zs4A 33 :V T0287 56 :TNKGALD 1zs4A 35 :VDKSQIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10019 # 2bnxA.54.246 read from T0287.t2k.many.frag # found chain 2bnxA in template set T0287 54 :MHTNKGALD 2bnxA 377 :EMDDFGEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10020 # 1y0zA.54.46 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 54 :MHTNKGALD 1y0zA 47 :IKTQKHYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10021 # 1fipA.54.80 read from T0287.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1fipA 81 :M T0287 56 :TNKGALD 1fipA 83 :INRGTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10023 # 1ho8A.54.254 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 54 :MHTNKGALD 1ho8A 253 :LTFNPVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10024 # 1xpjA.54.50 read from T0287.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 54 :MHTN 1xpjA 51 :MRTY T0287 59 :GALD 1xpjA 56 :GNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10026 # 1ykjA.54.370 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 54 :MHTNKGALD 1ykjA 1371 :YLGSEAGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10027 # 1e6iA.54.87 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)H55 (1e6iA)N407 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 1e6iA 406 :Y T0287 56 :TNK 1e6iA 408 :GEN T0287 60 :ALD 1e6iA 412 :SYY Number of specific fragments extracted= 3 number of extra gaps= 2 total=10030 # 1moq.54.206 read from T0287.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 54 :MHTNK 1moq 447 :MLSQD T0287 60 :ALD 1moq 453 :RIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10032 # 1tffA.54.120 read from T0287.t2k.many.frag # found chain 1tffA in template set T0287 54 :MHTNKGALD 1tffA 121 :VFNDQSASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10033 # 1cxzB.54.53 read from T0287.t2k.many.frag # found chain 1cxzB in template set T0287 54 :MHTNKGALD 1cxzB 66 :LGRSLGPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10034 # 1w9cA.54.197 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 54 :MHTNKGALD 1w9cA 904 :VAQEEAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10035 # 1cg5B.54.90 read from T0287.t2k.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)H55 (1cg5B)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1cg5B 91 :I T0287 56 :TNKGALD 1cg5B 93 :VDTQNFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10037 # 1j75A.54.34 read from T0287.t2k.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)H55 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1j75A)P141 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 1j75A 138 :C T0287 56 :T 1j75A 140 :V T0287 58 :KGALD 1j75A 142 :KKTLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=10040 # 1z21A.54.65 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :MHTN 1z21A 103 :FDSF T0287 59 :GALD 1z21A 108 :KRWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10042 # 1u0fA.54.231 read from T0287.t2k.many.frag # found chain 1u0fA in training set T0287 54 :MHTNKGALD 1u0fA 231 :AAKDPSAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10043 # 1sdiA.55.99 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HTN 1sdiA 100 :SSA T0287 59 :GALDK 1sdiA 104 :GALDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10045 # 2cygA.55.62 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDK 2cygA 93 :NPSAAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=10046 # 1tu9A.55.16 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 55 :HTNKGALDK 1tu9A 15 :CASTGFFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10047 # 1wer.55.299 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HTN 1wer 1013 :SNE T0287 59 :GALDK 1wer 1017 :GAQQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=10049 # 1zupA.55.298 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 55 :HTNKGALDK 1zupA 287 :LTDKNYMNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10050 # 1hz4A.55.227 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 55 :HTNKGALDK 1hz4A 226 :TGDKAAAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10051 # 1z7lA.55.51 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 55 :HTN 1z7lA 667 :LTD T0287 60 :ALDK 1z7lA 672 :FVER Number of specific fragments extracted= 2 number of extra gaps= 1 total=10053 # 1dk0A.55.140 read from T0287.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1dk0A 141 :S T0287 57 :NKGALDK 1dk0A 143 :DTGALET Number of specific fragments extracted= 2 number of extra gaps= 1 total=10055 # 1zx4A.55.79 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1zx4A 221 :G T0287 57 :NKGALDK 1zx4A 223 :KNLEFDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10057 # 1k78A.55.58 read from T0287.t2k.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 56 :TNK 1k78A 60 :VSH T0287 60 :ALDK 1k78A 64 :CVSK Number of specific fragments extracted= 2 number of extra gaps= 2 total=10059 # 2acvA.55.443 read from T0287.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 2acvA 444 :VVD T0287 59 :GALDK 2acvA 448 :GSSLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10061 # 1zc6A.55.221 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 55 :HTNKGALDK 1zc6A 222 :ARVDPEADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10062 # 2bnxA.55.247 read from T0287.t2k.many.frag # found chain 2bnxA in template set T0287 55 :HTNKGALDK 2bnxA 378 :MDDFGEVFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10063 # 1he1A.55.90 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 1he1A 185 :GTT T0287 59 :GALDK 1he1A 189 :GAASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10065 # 1e6iA.55.88 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 55 :HTNKGALDK 1e6iA 407 :NGENTSYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10066 # 1cxzB.55.54 read from T0287.t2k.many.frag # found chain 1cxzB in template set T0287 55 :HTNKGALDK 1cxzB 67 :GRSLGPVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10067 # 1xpjA.55.51 read from T0287.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 55 :HTN 1xpjA 52 :RTY T0287 59 :GALDK 1xpjA 56 :GNVGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10069 # 1cg5B.55.91 read from T0287.t2k.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)H55 (1cg5B)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1cg5B 93 :VDTQNFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10070 # 1zs4A.55.34 read from T0287.t2k.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)T56 (1zs4A)V35 because Y (epsilon') conformation "forbidden" or filtered. T0287 55 :H 1zs4A 34 :G T0287 57 :NKGALDK 1zs4A 36 :DKSQISR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10072 # 1tffA.55.121 read from T0287.t2k.many.frag # found chain 1tffA in template set Warning: unaligning (T0287)N57 (1tffA)D124 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 1tffA 122 :FN T0287 58 :KGALDK 1tffA 125 :QSASDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=10074 # 2f6lA.55.54 read from T0287.t2k.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HT 2f6lA 88 :HI T0287 58 :KGALDK 2f6lA 91 :PDYVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10076 # 1y6xA.55.34 read from T0287.t2k.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 55 :HT 1y6xA 35 :DG T0287 58 :KGALDK 1y6xA 38 :VHALGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10078 # 1j75A.55.35 read from T0287.t2k.many.frag # found chain 1j75A in template set T0287 55 :HTNKGALDK 1j75A 139 :QVPKKTLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10079 # 1w33A.55.80 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 55 :HTNKGALDK 1w33A 150 :KKNSEHYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10080 # 1ho8A.55.255 read from T0287.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N57 (1ho8A)N256 because D (zeta) conformation "forbidden" or filtered. T0287 55 :HT 1ho8A 254 :TF T0287 58 :KGALDK 1ho8A 257 :PVFANE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10082 # 1ykjA.55.371 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 55 :HTNKGALDK 1ykjA 1372 :LGSEAGLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10083 # 1urjA.55.606 read from T0287.t2k.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)N57 (1urjA)N609 because E (beta_S) conformation "forbidden" or filtered. T0287 55 :HT 1urjA 607 :IT T0287 58 :KGALDK 1urjA 610 :REALHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10085 # 1z21A.55.66 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 55 :HTN 1z21A 104 :DSF T0287 59 :GALDK 1z21A 108 :KRWEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10087 # 1fipA.55.81 read from T0287.t2k.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1fipA 83 :INRGTLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10088 # 1ikpA.55.301 read from T0287.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)H55 (1ikpA)R302 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1ikpA 303 :LSWNQVDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=10089 # 1sdiA.56.100 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 56 :TNKGALDKV 1sdiA 101 :SAKGALDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10090 # 1tu9A.56.17 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 56 :TNKGALDKV 1tu9A 16 :ASTGFFDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10091 # 2cygA.56.63 read from T0287.t2k.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDKV 2cygA 93 :NPSAAGDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=10092 # 1wer.56.300 read from T0287.t2k.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TN 1wer 1014 :NE T0287 59 :GALDKV 1wer 1017 :GAQQHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10094 # 1dk0A.56.141 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 56 :TNKGALDKV 1dk0A 142 :GDTGALETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10095 # 1zc6A.56.222 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 56 :TNKGALDKV 1zc6A 223 :RVDPEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10096 # 1zupA.56.299 read from T0287.t2k.many.frag # found chain 1zupA in template set T0287 56 :TNKGALDKV 1zupA 288 :TDKNYMNTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10097 # 1xpjA.56.52 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 56 :TNKGALDKV 1xpjA 53 :TYEGNVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10098 # 1hz4A.56.228 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 56 :TNKGALDKV 1hz4A 227 :GDKAAAANW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10099 # 1ikpA.56.302 read from T0287.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)A60 (1ikpA)Q307 because G (3-10) conformation "forbidden" or filtered. T0287 56 :TNKG 1ikpA 303 :LSWN T0287 61 :LDKV 1ikpA 308 :VDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10101 # 1k78A.56.59 read from T0287.t2k.many.frag # found chain 1k78A in template set T0287 56 :TNKGALDKV 1k78A 60 :VSHGCVSKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10102 # 2bnxA.56.248 read from T0287.t2k.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)N57 (2bnxA)D380 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 2bnxA 379 :D T0287 58 :KGALDKV 2bnxA 381 :FGEVFQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10104 # 1z7lA.56.52 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 56 :TN 1z7lA 668 :TD T0287 60 :ALDKV 1z7lA 672 :FVERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10106 # 1zx4A.56.80 read from T0287.t2k.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1zx4A 223 :KNLEFDQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10107 # 1q2lA.56.840 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TNK 1q2lA 864 :QAP T0287 61 :LDKV 1q2lA 869 :LGEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10109 # 1cxzB.56.55 read from T0287.t2k.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)N57 (1cxzB)S69 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1cxzB 68 :R T0287 58 :KGALDKV 1cxzB 70 :LGPVELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10111 # 1y6xA.56.35 read from T0287.t2k.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 56 :T 1y6xA 36 :G T0287 58 :KGALDKV 1y6xA 38 :VHALGKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10113 # 1j75A.56.36 read from T0287.t2k.many.frag # found chain 1j75A in template set T0287 56 :TNKGALDKV 1j75A 140 :VPKKTLNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10114 # 1zs4A.56.35 read from T0287.t2k.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)N57 (1zs4A)D36 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1zs4A 35 :V T0287 58 :KGALDKV 1zs4A 37 :KSQISRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=10116 # 1ykjA.56.372 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 56 :TNKGALDKV 1ykjA 1373 :GSEAGLATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10117 # 1tzvA.56.55 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 56 :TNKGALDKV 1tzvA 56 :ENLSMIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10118 # 1e6iA.56.89 read from T0287.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TNK 1e6iA 408 :GEN T0287 60 :ALDKV 1e6iA 412 :SYYKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10120 # 1cg5B.56.92 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 56 :TNKGALDKV 1cg5B 93 :VDTQNFKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10121 # 2acvA.56.444 read from T0287.t2k.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)G59 (2acvA)G448 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TNK 2acvA 445 :VDG T0287 60 :ALDKV 2acvA 449 :SSLIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10123 # 1he1A.56.91 read from T0287.t2k.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TN 1he1A 186 :TT T0287 59 :GALDKV 1he1A 189 :GAASQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10125 # 2aqlA.56.58 read from T0287.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKV 2aqlA 212 :YAVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10126 # 1tffA.56.122 read from T0287.t2k.many.frag # found chain 1tffA in template set T0287 56 :TNKGALDKV 1tffA 123 :NDQSASDHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10127 # 1z21A.56.67 read from T0287.t2k.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TN 1z21A 105 :SF T0287 59 :GALDKV 1z21A 108 :KRWEAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10129 # 1qoyA.56.216 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 56 :TNKGALDKV 1qoyA 202 :VVEGKLIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10130 # 1w33A.56.81 read from T0287.t2k.many.frag # found chain 1w33A in template set T0287 56 :TNKGALDKV 1w33A 151 :KNSEHYNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=10131 # 1tu9A.57.18 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 57 :NKGALDKVL 1tu9A 17 :STGFFDDFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10132 # 1zc6A.57.223 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 57 :NKGALDKVL 1zc6A 224 :VDPEADALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10133 # 1ikpA.57.303 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 57 :NKGALDKVL 1ikpA 304 :SWNQVDQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10134 # 2cygA.57.64 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 57 :NKGALDKVL 2cygA 93 :NPSAAGDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10135 # 1xpjA.57.53 read from T0287.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)A60 (1xpjA)N57 because N (gamma') conformation "forbidden" or filtered. T0287 57 :NKG 1xpjA 54 :YEG T0287 61 :LDKVL 1xpjA 58 :VGKIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=10137 # 1dk0A.57.142 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 57 :NKGALDKVL 1dk0A 143 :DTGALETAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10138 # 1sdiA.57.101 read from T0287.t2k.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :N 1sdiA 102 :A T0287 59 :GALDKVL 1sdiA 104 :GALDTLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10140 # 1wer.57.301 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 57 :NKGALDKVL 1wer 1015 :ERGAQQHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10141 # 1zx4A.57.81 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 57 :NKGALDKVL 1zx4A 223 :KNLEFDQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10142 # 2aqlA.57.59 read from T0287.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVL 2aqlA 212 :YAVNEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10143 # 1q2lA.57.841 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. T0287 57 :NK 1q2lA 865 :AP T0287 60 :ALDKVL 1q2lA 868 :TLGEEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10145 # 1y6xA.57.36 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 57 :NKGALDKVL 1y6xA 37 :GVHALGKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10146 # 1hz4A.57.229 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 57 :NKGALDKVL 1hz4A 228 :DKAAAANWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10147 # 1k78A.57.60 read from T0287.t2k.many.frag # found chain 1k78A in template set T0287 57 :NKGALDKVL 1k78A 61 :SHGCVSKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10148 # 1ykjA.57.373 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 57 :NKGALDKVL 1ykjA 1374 :SEAGLATIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10149 # 1z7lA.57.53 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 57 :N 1z7lA 669 :D T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10151 # 1tzvA.57.56 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 57 :NKGALDKVL 1tzvA 57 :NLSMIDDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10152 # 1cxzB.57.56 read from T0287.t2k.many.frag # found chain 1cxzB in template set T0287 57 :NKGALDKVL 1cxzB 69 :SLGPVELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10153 # 1zupA.57.300 read from T0287.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1zupA 290 :KNYMNTRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10154 # 1j75A.57.37 read from T0287.t2k.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)N57 (1j75A)P141 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1j75A 142 :KKTLNQVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10155 # 1qoyA.57.217 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 57 :NKGALDKVL 1qoyA 203 :VEGKLIPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10156 # 1mw9X.57.555 read from T0287.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)N57 (1mw9X)H556 because L (left) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1mw9X 557 :EAEWKAVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10157 # 2bnxA.57.249 read from T0287.t2k.many.frag # found chain 2bnxA in template set T0287 57 :NKGALDKVL 2bnxA 380 :DFGEVFQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=10158 # 1zs4A.57.36 read from T0287.t2k.many.frag # found chain 1zs4A in template set T0287 57 :NKGALDKVL 1zs4A 36 :DKSQISRWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10159 # 1cg5B.57.93 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 57 :NKGALDKVL 1cg5B 94 :DTQNFKLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10160 # 1e6iA.57.90 read from T0287.t2k.many.frag # found chain 1e6iA in template set T0287 57 :NKGALDKVL 1e6iA 409 :ENTSYYKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10161 # 1zk8A.57.107 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 57 :NKGALDKVL 1zk8A 108 :RDEEVRKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10162 # 1g3kA.57.66 read from T0287.t2k.many.frag # found chain 1g3kA in template set Warning: unaligning (T0287)K58 (1g3kA)Q68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1g3kA)H70 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :N 1g3kA 67 :H T0287 59 :G 1g3kA 69 :G T0287 61 :LDKVL 1g3kA 71 :LLKSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=10165 # 1zpyA.57.73 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)K58 (1zpyA)D75 because D (zeta) conformation "forbidden" or filtered. T0287 57 :N 1zpyA 74 :C T0287 59 :GALDKVL 1zpyA 76 :PAFDKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10167 # 1ho8A.57.257 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 57 :NKGALDKVL 1ho8A 256 :NPVFANELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10168 # 1zc6A.58.224 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 58 :KGALDKVLR 1zc6A 225 :DPEADALLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10169 # 1tu9A.58.19 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 58 :KGALDKVLR 1tu9A 18 :TGFFDDFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10170 # 1xpjA.58.54 read from T0287.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1xpjA 56 :GNVGKINI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10171 # 1y6xA.58.37 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 58 :KGALDKVLR 1y6xA 38 :VHALGKKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10172 # 1ikpA.58.304 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 58 :KGALDKVLR 1ikpA 305 :WNQVDQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10173 # 1dk0A.58.143 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 58 :KGALDKVLR 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10174 # 2aqlA.58.60 read from T0287.t2k.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVLR 2aqlA 212 :YAVNEVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10175 # 1q2lA.58.842 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :K 1q2lA 866 :P T0287 61 :LDKVLR 1q2lA 869 :LGEEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10177 # 2cygA.58.65 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 58 :KGALDKVLR 2cygA 94 :PSAAGDWIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10178 # 1tzvA.58.57 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 58 :KGALDKVLR 1tzvA 58 :LSMIDDLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10179 # 2f5xA.58.285 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 58 :KGALDKVLR 2f5xA 274 :PEALQAKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10180 # 1qoyA.58.218 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 58 :KGALDKVLR 1qoyA 204 :EGKLIPELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10181 # 1zx4A.58.82 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 58 :KGALDKVLR 1zx4A 224 :NLEFDQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10182 # 1zk8A.58.108 read from T0287.t2k.many.frag # found chain 1zk8A in template set Warning: unaligning (T0287)K58 (1zk8A)D109 because E (beta_S) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1zk8A 110 :EEVRKAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=10183 # 1hz4A.58.230 read from T0287.t2k.many.frag # found chain 1hz4A in training set T0287 58 :KGALDKVLR 1hz4A 229 :KAAAANWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10184 # 1p4cA.58.318 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 58 :KGALDKVLR 1p4cA 319 :ETGVDEVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10185 # 1wer.58.302 read from T0287.t2k.many.frag # found chain 1wer in training set T0287 58 :KGALDKVLR 1wer 1016 :RGAQQHVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10186 # 1mw9X.58.556 read from T0287.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)G59 (1mw9X)A558 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :K 1mw9X 557 :E T0287 60 :ALDKVLR 1mw9X 559 :EWKAVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10188 # 1po5A.58.119 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 58 :KGALDKVLR 1po5A 139 :KRSVEERIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10189 # 1zpyA.58.74 read from T0287.t2k.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)K58 (1zpyA)D75 because D (zeta) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1zpyA 76 :PAFDKELK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10190 # 1j75A.58.38 read from T0287.t2k.many.frag # found chain 1j75A in template set T0287 58 :KGALDKVLR 1j75A 142 :KKTLNQVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10191 # 1z7lA.58.54 read from T0287.t2k.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 Warning: unaligning (T0287)R66 (1z7lA)R678 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=10192 # 1k78A.58.61 read from T0287.t2k.many.frag # found chain 1k78A in template set T0287 58 :KGALDKVLR 1k78A 62 :HGCVSKILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10193 # 1fjgT.58.73 read from T0287.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1fjgT)N75 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLR 1fjgT 76 :AAARRKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=10194 # 1ykjA.58.374 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 58 :KGALDKVLR 1ykjA 1375 :EAGLATIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10195 # 1ho8A.58.258 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 58 :KGALDKVLR 1ho8A 257 :PVFANELVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10196 # 1zs4A.58.37 read from T0287.t2k.many.frag # found chain 1zs4A in template set T0287 58 :KGALDKVLR 1zs4A 37 :KSQISRWKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10197 # 1sdiA.58.102 read from T0287.t2k.many.frag # found chain 1sdiA in training set T0287 58 :KGALDKVLR 1sdiA 103 :KGALDTLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10198 # 1cg5B.58.94 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 58 :KGALDKVLR 1cg5B 95 :TQNFKLLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10199 # 1cxzB.58.57 read from T0287.t2k.many.frag # found chain 1cxzB in template set T0287 58 :KGALDKVLR 1cxzB 70 :LGPVELLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10200 # 1zc6A.59.225 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 59 :GALDKVLRN 1zc6A 226 :PEADALLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10201 # 1tu9A.59.20 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 59 :GALDKVLRN 1tu9A 19 :GFFDDFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10202 # 1y6xA.59.38 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 59 :GALDKVLRN 1y6xA 39 :HALGKKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10203 # 1ikpA.59.305 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 59 :GALDKVLRN 1ikpA 306 :NQVDQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10204 # 2f5xA.59.286 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 59 :GALDKVLRN 2f5xA 275 :EALQAKVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10205 # 1xpjA.59.55 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 59 :GALDKVLRN 1xpjA 56 :GNVGKINIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10206 # 1zx4A.59.83 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 59 :GALDKVLRN 1zx4A 225 :LEFDQLIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10207 # 1p4cA.59.319 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 59 :GALDKVLRN 1p4cA 320 :TGVDEVLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10208 # 1zk8A.59.109 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 59 :GALDKVLRN 1zk8A 110 :EEVRKAGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10209 # 2aqlA.59.61 read from T0287.t2k.many.frag # found chain 2aqlA in template set T0287 59 :GALDKVLRN 2aqlA 212 :YAVNEVVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10210 # 1mw9X.59.557 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 59 :GALDKVLRN 1mw9X 558 :AEWKAVLDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10211 # 1tzvA.59.58 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 59 :GALDKVLRN 1tzvA 59 :SMIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10212 # 1ho8A.59.259 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 59 :GALDKVLRN 1ho8A 258 :VFANELVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10213 # 1q2lA.59.843 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 59 :G 1q2lA 867 :Q T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10215 # 1fjgT.59.74 read from T0287.t2k.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLRN 1fjgT 76 :AAARRKSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=10216 # 2cygA.59.66 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 59 :GALDKVLRN 2cygA 95 :SAAGDWIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10217 # 1or7A.59.46 read from T0287.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0287)G59 (1or7A)G44 because H (helix) conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1or7A 45 :DVPDVVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=10218 # 1dk0A.59.144 read from T0287.t2k.many.frag # found chain 1dk0A in training set T0287 59 :GALDKVLRN 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10219 # 1h6pA.59.129 read from T0287.t2k.many.frag # found chain 1h6pA in template set T0287 59 :GALDKVLRN 1h6pA 172 :EKASKILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10220 # 1qoyA.59.219 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 59 :GALDKVLRN 1qoyA 205 :GKLIPELKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10221 # 1po5A.59.120 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 59 :GALDKVLRN 1po5A 140 :RSVEERIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10222 # 1a6m.59.128 read from T0287.t2k.many.frag # found chain 1a6m in training set Warning: unaligning (T0287)G59 (1a6m)G129 because H (helix) conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1a6m 130 :AMNKALEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10223 # 1hz4A.59.231 read from T0287.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)N67 (1hz4A)H238 because G (3-10) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1hz4A 230 :AAAANWLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=10224 # 1jk0B.59.240 read from T0287.t2k.many.frag # found chain 1jk0B in template set T0287 59 :GALDKVLRN 1jk0B 241 :KIIEKIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10225 # 1ykjA.59.375 read from T0287.t2k.many.frag # found chain 1ykjA in template set T0287 59 :GALDKVLRN 1ykjA 1376 :AGLATIAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10226 # 1xp8A.59.179 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 59 :GALDKVLRN 1xp8A 177 :GLQARLMSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10227 # 1cg5B.59.95 read from T0287.t2k.many.frag # found chain 1cg5B in training set T0287 59 :GALDKVLRN 1cg5B 96 :QNFKLLGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10228 # 1dlwA.59.71 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 59 :GALDKVLRN 1dlwA 72 :GVSNAQFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10229 # 1psrA.59.28 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 59 :GALDKVLRN 1psrA 29 :PSLLTMMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10230 # 1wa5C.59.393 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 59 :GALDKVLRN 1wa5C 394 :VLVTNIFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10231 # 1zc6A.60.226 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 60 :ALDKVLRNY 1zc6A 227 :EADALLRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10232 # 2f5xA.60.287 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 60 :ALDKVLRNY 2f5xA 276 :ALQAKVKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10233 # 1y6xA.60.39 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 60 :ALDKVLRNY 1y6xA 40 :ALGKKLLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10234 # 1mw9X.60.558 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 60 :ALDKVLRNY 1mw9X 559 :EWKAVLDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10235 # 1tu9A.60.21 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 60 :ALDKVLRNY 1tu9A 20 :FFDDFYRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10236 # 1tzvA.60.59 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 60 :ALDKVLRNY 1tzvA 60 :MIDDLISRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10237 # 1p4cA.60.320 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 60 :ALDKVLRNY 1p4cA 321 :GVDEVLTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10238 # 1zk8A.60.110 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 60 :ALDKVLRNY 1zk8A 111 :EVRKAGDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10239 # 1ikpA.60.306 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 60 :ALDKVLRNY 1ikpA 307 :QVDQVIRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10240 # 1qoyA.60.220 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 60 :ALDKVLRNY 1qoyA 206 :KLIPELKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10241 # 1h6pA.60.130 read from T0287.t2k.many.frag # found chain 1h6pA in template set T0287 60 :ALDKVLRNY 1h6pA 173 :KASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10242 # 2aqlA.60.62 read from T0287.t2k.many.frag # found chain 2aqlA in template set T0287 60 :ALDKVLRNY 2aqlA 213 :AVNEVVAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10243 # 1ho8A.60.260 read from T0287.t2k.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N67 (1ho8A)K266 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVLR 1ho8A 259 :FANELVQ T0287 68 :Y 1ho8A 267 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=10245 # 1fjgT.60.75 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 60 :ALDKVLRNY 1fjgT 76 :AAARRKSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10246 # 1psrA.60.29 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 60 :ALDKVLRNY 1psrA 30 :SLLTMMKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10247 # 1wa5C.60.394 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 60 :ALDKVLRNY 1wa5C 395 :LVTNIFLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10248 # 1xp8A.60.180 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 60 :ALDKVLRNY 1xp8A 178 :LQARLMSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10249 # 1bgf.60.100 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 60 :ALDKVLRNY 1bgf 100 :HVAVVISNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10250 # 1xpjA.60.56 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 60 :ALDKVLRNY 1xpjA 57 :NVGKINIHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10251 # 1q2lA.60.844 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1q2lA 869 :LGEEASKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10252 # 1a6m.60.129 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 60 :ALDKVLRNY 1a6m 130 :AMNKALELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10253 # 1po5A.60.121 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 60 :ALDKVLRNY 1po5A 141 :SVEERIQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10254 # 1or7A.60.47 read from T0287.t2k.many.frag # found chain 1or7A in template set T0287 60 :ALDKVLRNY 1or7A 45 :DVPDVVQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10255 # 1dk0A.60.145 read from T0287.t2k.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 T0287 60 :ALDKVLRN 1dk0A 146 :ALETALNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10256 # 1zx4A.60.84 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 60 :ALDKVLRNY 1zx4A 226 :EFDQLIQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10257 # 1txjA.60.85 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 60 :ALDKVLRNY 1txjA 86 :EYSVYIKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10258 # 2cygA.60.67 read from T0287.t2k.many.frag # found chain 2cygA in template set T0287 60 :ALDKVLRNY 2cygA 96 :AAGDWIRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10259 # 1jk0B.60.241 read from T0287.t2k.many.frag # found chain 1jk0B in template set T0287 60 :ALDKVLRNY 1jk0B 242 :IIEKIITEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10260 # 1cfr.60.33 read from T0287.t2k.many.frag # found chain 1cfr in template set T0287 60 :ALDKVLRNY 1cfr 34 :EFSKVLSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10261 # 2bnlA.60.82 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 60 :ALDKVLRNY 2bnlA 83 :FLATALAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10262 # 1zc6A.61.227 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 61 :LDKVLRNYM 1zc6A 228 :ADALLRQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10263 # 2f5xA.61.288 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 61 :LDKVLRNYM 2f5xA 277 :LQAKVKQQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10264 # 1mw9X.61.559 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 61 :LDKVLRNYM 1mw9X 560 :WKAVLDHFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10265 # 1tu9A.61.22 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 61 :LDKVLRNYM 1tu9A 21 :FDDFYRHFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10266 # 1p4cA.61.321 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 61 :LDKVLRNYM 1p4cA 322 :VDEVLTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10267 # 1y6xA.61.40 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 61 :LDKVLRNYM 1y6xA 41 :LGKKLLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10268 # 1qoyA.61.221 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 61 :LDKVLRNYM 1qoyA 207 :LIPELKNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10269 # 1zk8A.61.111 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 61 :LDKVLRNYM 1zk8A 112 :VRKAGDGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10270 # 1bgf.61.101 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 61 :LDKVLRNYM 1bgf 101 :VAVVISNCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10271 # 1txjA.61.86 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 61 :LDKVLRNYM 1txjA 87 :YSVYIKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10272 # 1fjgT.61.76 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 61 :LDKVLRNYM 1fjgT 77 :AARRKSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10273 # 1tzvA.61.60 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 61 :LDKVLRNYM 1tzvA 61 :IDDLISRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10274 # 1h6pA.61.131 read from T0287.t2k.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 61 :LDKVLRNY 1h6pA 174 :ASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10275 # 1psrA.61.30 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 61 :LDKVLRNYM 1psrA 31 :LLTMMKENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10276 # 1wa5C.61.395 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 61 :LDKVLRNYM 1wa5C 396 :VTNIFLAHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10277 # 1xp8A.61.181 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 61 :LDKVLRNYM 1xp8A 179 :QARLMSQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10278 # 1ho8A.61.261 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 61 :LDKVLRNYM 1ho8A 260 :ANELVQKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10279 # 1ikpA.61.307 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 61 :LDKVLRNYM 1ikpA 308 :VDQVIRNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10280 # 1a6m.61.130 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 61 :LDKVLRNYM 1a6m 131 :MNKALELFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10281 # 1or7A.61.48 read from T0287.t2k.many.frag # found chain 1or7A in template set T0287 61 :LDKVLRNYM 1or7A 46 :VPDVVQEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10282 # 1sz9A.61.66 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1sz9A 67 :LDSICKNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=10283 # 2aqlA.61.63 read from T0287.t2k.many.frag # found chain 2aqlA in template set T0287 61 :LDKVLRNYM 2aqlA 214 :VNEVVAGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10284 # 1cfr.61.34 read from T0287.t2k.many.frag # found chain 1cfr in template set T0287 61 :LDKVLRNYM 1cfr 35 :FSKVLSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10285 # 1zx4A.61.85 read from T0287.t2k.many.frag # found chain 1zx4A in template set T0287 61 :LDKVLRNYM 1zx4A 227 :FDQLIQNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10286 # 2bnlA.61.83 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 61 :LDKVLRNYM 2bnlA 84 :LATALAEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10287 # 1jk0B.61.242 read from T0287.t2k.many.frag # found chain 1jk0B in template set T0287 61 :LDKVLRNYM 1jk0B 243 :IEKIITEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10288 # 1q2lA.61.845 read from T0287.t2k.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)Y68 (1q2lA)L876 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK T0287 69 :M 1q2lA 877 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=10290 # 2au5A.61.84 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 61 :LDKVLRNYM 2au5A 82 :LKGELARLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10291 # 1xpjA.61.57 read from T0287.t2k.many.frag # found chain 1xpjA in template set T0287 61 :LDKVLRNYM 1xpjA 58 :VGKINIHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10292 # 1hs6A.61.424 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 61 :LDKVLRNYM 1hs6A 424 :WKDFLYSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10293 # 1zc6A.62.228 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 62 :DKVLRNYMK 1zc6A 229 :DALLRQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10294 # 2f5xA.62.289 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 62 :DKVLRNYMK 2f5xA 278 :QAKVKQQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10295 # 1bgf.62.102 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 62 :DKVLRNYMK 1bgf 102 :AVVISNCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10296 # 1qoyA.62.222 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 62 :DKVLRNYMK 1qoyA 208 :IPELKNKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10297 # 1txjA.62.87 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 62 :DKVLRNYMK 1txjA 88 :SVYIKNYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10298 # 1mw9X.62.560 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 62 :DKVLRNYMK 1mw9X 561 :KAVLDHFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10299 # 1wa5C.62.396 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 62 :DKVLRNYMK 1wa5C 397 :TNIFLAHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10300 # 1tu9A.62.23 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 62 :DKVLRNYMK 1tu9A 22 :DDFYRHFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10301 # 1tzvA.62.61 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 62 :DKVLRNYMK 1tzvA 62 :DDLISRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10302 # 1psrA.62.31 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)Y68 (1psrA)N38 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLRN 1psrA 32 :LTMMKE T0287 69 :MK 1psrA 39 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10304 # 1y6xA.62.41 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 62 :DKVLRNYMK 1y6xA 42 :GKKLLEEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10305 # 1fjgT.62.77 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 62 :DKVLRNYMK 1fjgT 78 :ARRKSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10306 # 1xp8A.62.182 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 62 :DKVLRNYMK 1xp8A 180 :ARLMSQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10307 # 1hs6A.62.425 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 62 :DKVLRNYMK 1hs6A 425 :KDFLYSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10308 # 1zk8A.62.112 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 62 :DKVLRNYMK 1zk8A 113 :RKAGDGIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10309 # 1h6pA.62.132 read from T0287.t2k.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 62 :DKVLRNY 1h6pA 175 :SKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10310 # 1sz9A.62.67 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)K70 (1sz9A)S76 because P (beta_P) conformation "forbidden" or filtered. T0287 62 :DKVLRNYM 1sz9A 68 :DSICKNVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10311 # 1p4cA.62.322 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 62 :DKVLRNYMK 1p4cA 323 :DEVLTLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10312 # 1ho8A.62.262 read from T0287.t2k.many.frag # found chain 1ho8A in template set T0287 62 :DKVLRNYMK 1ho8A 261 :NELVQKYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10313 # 2au5A.62.85 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 62 :DKVLRNYMK 2au5A 83 :KGELARLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10314 # 1j5wA.62.221 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 62 :DKVLRNYMK 1j5wA 210 :FRHFDEYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10315 # 1ytaA.62.111 read from T0287.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0287)Y68 (1ytaA)Y118 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLRN 1ytaA 112 :RRFLFK T0287 69 :MK 1ytaA 119 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10317 # 2mhr.62.47 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 62 :DKVLRNYMK 2mhr 48 :VKVTTNHFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10318 # 1hw1A.62.185 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 62 :DKVLRNYMK 1hw1A 186 :RSLALGFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10319 # 1a6m.62.131 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 62 :DKVLRNYMK 1a6m 132 :NKALELFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10320 # 1po5A.62.123 read from T0287.t2k.many.frag # found chain 1po5A in training set T0287 62 :DKVLRNYMK 1po5A 143 :EERIQEEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10321 # 1i60A.62.117 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 62 :DKVLRNYMK 1i60A 118 :KKSSVDVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10322 # 1ikpA.62.308 read from T0287.t2k.many.frag # found chain 1ikpA in training set T0287 62 :DKVLRNYMK 1ikpA 309 :DQVIRNALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10323 # 1h7cA.62.67 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 62 :DKVLRNYMK 1h7cA 68 :QRRLEAAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10324 # 2bnlA.62.84 read from T0287.t2k.many.frag # found chain 2bnlA in template set T0287 62 :DKVLRNYMK 2bnlA 85 :ATALAEFWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10325 # 1zc6A.63.229 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 63 :KVLRNYMKD 1zc6A 230 :ALLRQAGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=10326 # 1bgf.63.103 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 63 :KVLRNYMKD 1bgf 103 :VVISNCLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10327 # 2f5xA.63.290 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 63 :KVLRNYMKD 2f5xA 279 :AKVKQQVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10328 # 1txjA.63.88 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 63 :KVLRNYMKD 1txjA 89 :VYIKNYMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10329 # 1qoyA.63.223 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 63 :KVLRNYMKD 1qoyA 209 :PELKNKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10330 # 1fjgT.63.78 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 63 :KVLRNYMKD 1fjgT 79 :RRKSRLMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10331 # 1mw9X.63.561 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 63 :KVLRNYMKD 1mw9X 562 :AVLDHFFSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10332 # 1wa5C.63.397 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 63 :KVLRNYMKD 1wa5C 398 :NIFLAHMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10333 # 1tu9A.63.24 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 63 :KVLRNYMKD 1tu9A 23 :DFYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10334 # 1hs6A.63.426 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 63 :KVLRNYMKD 1hs6A 426 :DFLYSYFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10335 # 1zk8A.63.113 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 63 :KVLRNYMKD 1zk8A 114 :KAGDGIVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10336 # 1y6xA.63.42 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 63 :KVLRNYMKD 1y6xA 43 :KKLLEEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10337 # 1psrA.63.32 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 63 :KVLRNYMKD 1psrA 33 :TMMKENFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10338 # 1xp8A.63.183 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 63 :KVLRNYMKD 1xp8A 181 :RLMSQALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10339 # 1sz9A.63.68 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 63 :KVLRNY 1sz9A 69 :SICKNV T0287 70 :K 1sz9A 76 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=10341 # 1j5wA.63.222 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 63 :KVLRNYMKD 1j5wA 211 :RHFDEYEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10342 # 1ytaA.63.112 read from T0287.t2k.many.frag # found chain 1ytaA in template set T0287 63 :KVLRNYMKD 1ytaA 113 :RFLFKYMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10343 # 2au5A.63.86 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 63 :KVLRNYMKD 2au5A 84 :GELARLIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10344 # 1p4cA.63.323 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 63 :KVLRNYMKD 1p4cA 324 :EVLTLLKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10345 # 2mhr.63.48 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 63 :KVLRNYMKD 2mhr 49 :KVTTNHFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10346 # 1muwA.63.64 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 63 :KVLRNYMKD 1muwA 65 :TERESHIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10347 # 1eyqA.63.104 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 63 :KVLRNYMKD 1eyqA 105 :EYSRKVMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10348 # 1mxrA.63.123 read from T0287.t2k.many.frag # found chain 1mxrA in training set Warning: unaligning (T0287)N67 (1mxrA)N128 because G (3-10) conformation "forbidden" or filtered. T0287 63 :KVLR 1mxrA 124 :HIIR T0287 68 :YMKD 1mxrA 129 :IVND Number of specific fragments extracted= 2 number of extra gaps= 1 total=10350 # 1hw1A.63.186 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 63 :KVLRNYMKD 1hw1A 187 :SLALGFYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10351 # 1tzvA.63.62 read from T0287.t2k.many.frag # found chain 1tzvA in training set T0287 63 :KVLRNYMKD 1tzvA 63 :DLISRYLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10352 # 1a6m.63.132 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 63 :KVLRNYMKD 1a6m 133 :KALELFRKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10353 # 1i60A.63.118 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 63 :KVLRNYMKD 1i60A 119 :KSSVDVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10354 # 1h7cA.63.68 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 63 :KVLRNYMKD 1h7cA 69 :RRLEAAYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10355 # 1yacA.63.184 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 63 :KVLRNYMKD 1yacA 185 :TLFSNHIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10356 # 1z8uA.63.38 read from T0287.t2k.many.frag # found chain 1z8uA in template set T0287 63 :KVLRNYMKD 1z8uA 39 :TVVEDWMNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10357 # 1bgf.64.104 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 64 :VLRNYMKDY 1bgf 104 :VISNCLREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10358 # 1wa5C.64.398 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 64 :VLRNYMKDY 1wa5C 399 :IFLAHMKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10359 # 1txjA.64.89 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 64 :VLRNYMKDY 1txjA 90 :YIKNYMQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10360 # 2f5xA.64.291 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 64 :VLRNYMKDY 2f5xA 280 :KVKQQVPQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10361 # 1zc6A.64.230 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 64 :VLRNYMKDY 1zc6A 231 :LLRQAGEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10362 # 1qoyA.64.224 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 64 :VLRNYMKDY 1qoyA 210 :ELKNKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10363 # 1fjgT.64.79 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 64 :VLRNYMKDY 1fjgT 80 :RKSRLMRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10364 # 1mw9X.64.562 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 64 :VLRNYMKDY 1mw9X 563 :VLDHFFSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10365 # 1hs6A.64.427 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 64 :VLRNYMKDY 1hs6A 427 :FLYSYFKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10366 # 1xp8A.64.184 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 64 :VLRNYMKDY 1xp8A 182 :LMSQALRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10367 # 1ytaA.64.113 read from T0287.t2k.many.frag # found chain 1ytaA in template set T0287 64 :VLRNYMKDY 1ytaA 114 :FLFKYMPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10368 # 1psrA.64.33 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 64 :VLRNYMKDY 1psrA 34 :MMKENFPNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10369 # 1i60A.64.119 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 64 :VLRNYMKDY 1i60A 120 :SSVDVLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10370 # 1tu9A.64.25 read from T0287.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)Y72 (1tu9A)S32 because Y (epsilon') conformation "forbidden" or filtered. T0287 64 :VLRNYMKD 1tu9A 24 :FYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=10371 # 1muwA.64.65 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 64 :VLRNYMKDY 1muwA 66 :ERESHIKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10372 # 1j5wA.64.223 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 64 :VLRNYMKDY 1j5wA 212 :HFDEYEKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10373 # 1y6xA.64.43 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 64 :VLRNYMKDY 1y6xA 44 :KLLEEAGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10374 # 1hw1A.64.187 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 64 :VLRNYMKDY 1hw1A 188 :LALGFYHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10375 # 2mhr.64.49 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 64 :VLRNYMKDY 2mhr 50 :VTTNHFTHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10376 # 1eyqA.64.105 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 64 :VLRNYMKDY 1eyqA 106 :YSRKVMENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10377 # 1zk8A.64.114 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 64 :VLRNYMKDY 1zk8A 115 :AGDGIVKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10378 # 1mxrA.64.124 read from T0287.t2k.many.frag # found chain 1mxrA in training set Warning: unaligning (T0287)D71 (1mxrA)D132 because D (zeta) conformation "forbidden" or filtered. T0287 64 :VLRNYMK 1mxrA 125 :IIRNIVN T0287 72 :Y 1mxrA 133 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=10380 # 1h7cA.64.69 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 64 :VLRNYMKDY 1h7cA 70 :RLEAAYLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10381 # 2au5A.64.87 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 64 :VLRNYMKDY 2au5A 85 :ELARLIRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10382 # 1b5l.64.118 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 64 :VLRNYMKDY 1b5l 119 :TVKKYFQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10383 # 1yacA.64.185 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 64 :VLRNYMKDY 1yacA 186 :LFSNHIPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10384 # 1l9lA.64.43 read from T0287.t2k.many.frag # found chain 1l9lA in training set Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE in next template residue (1l9lA)Y52 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE at template residue (1l9lA)Y52 T0287 64 :VLRNYMK 1l9lA 44 :VCRNFMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=10385 # 1p4cA.64.324 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 64 :VLRNYMKDY 1p4cA 325 :VLTLLKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10386 # 1z8uA.64.39 read from T0287.t2k.many.frag # found chain 1z8uA in template set T0287 64 :VLRNYMKDY 1z8uA 40 :VVEDWMNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10387 # 1sz9A.64.69 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 64 :VLRNYMK 1sz9A 70 :ICKNVGS T0287 72 :Y 1sz9A 78 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=10389 # 1wa5C.65.399 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 65 :LRNYMKDYR 1wa5C 400 :FLAHMKGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10390 # 1bgf.65.105 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 65 :LRNYMKDYR 1bgf 105 :ISNCLREER Number of specific fragments extracted= 1 number of extra gaps= 0 total=10391 # 1zc6A.65.231 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 65 :LRNYMKDYR 1zc6A 232 :LRQAGEDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10392 # 2f5xA.65.292 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 65 :LRNYMKDYR 2f5xA 281 :VKQQVPQWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10393 # 1txjA.65.90 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 65 :LRNYMKDYR 1txjA 91 :IKNYMQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10394 # 1fjgT.65.80 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 65 :LRNYMKDYR 1fjgT 81 :KSRLMRKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10395 # 1xp8A.65.185 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 65 :LRNYMKDYR 1xp8A 183 :MSQALRKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10396 # 1muwA.65.66 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 65 :LRNYMKDYR 1muwA 67 :RESHIKRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10397 # 1mw9X.65.563 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 65 :LRNYMKDYR 1mw9X 564 :LDHFFSDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10398 # 1qoyA.65.225 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 65 :LRNYMKDYR 1qoyA 211 :LKNKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10399 # 1j5wA.65.224 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 65 :LRNYMKDYR 1j5wA 213 :FDEYEKEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10400 # 1hs6A.65.428 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)M69 (1hs6A)F432 because G (3-10) conformation "forbidden" or filtered. T0287 65 :LRNY 1hs6A 428 :LYSY T0287 70 :KDYR 1hs6A 433 :KDKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10402 # 1eyqA.65.106 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 65 :LRNYMKDYR 1eyqA 107 :SRKVMENCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10403 # 2mhr.65.50 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 65 :LRNYMKDYR 2mhr 51 :TTNHFTHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10404 # 1ytaA.65.114 read from T0287.t2k.many.frag # found chain 1ytaA in template set T0287 65 :LRNYMKDYR 1ytaA 115 :LFKYMPELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10405 # 1psrA.65.34 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 65 :LRNYMKDYR 1psrA 35 :MKENFPNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10406 # 1p4cA.65.325 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 65 :LRNYMKDYR 1p4cA 326 :LTLLKADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=10407 # 1zk8A.65.115 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 65 :LRNYMKDYR 1zk8A 116 :GDGIVKLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10408 # 1b5l.65.119 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 65 :LRNYMKDYR 1b5l 120 :VKKYFQGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10409 # 1tu9A.65.26 read from T0287.t2k.many.frag # found chain 1tu9A in training set T0287 65 :LRNYMKDYR 1tu9A 25 :YRHFLASSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10410 # 1i60A.65.120 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 65 :LRNYMKDYR 1i60A 121 :SVDVLTELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10411 # 1h7cA.65.70 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 65 :LRNYMKDYR 1h7cA 71 :LEAAYLDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10412 # 1a6m.65.134 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 65 :LRNYMKDYR 1a6m 135 :LELFRKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10413 # 1hw1A.65.188 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 65 :LRNYMKDYR 1hw1A 189 :ALGFYHKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10414 # 1uw4B.65.78 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 65 :LRNYMKDYR 1uw4B 846 :VDGVLEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10415 # 1y6xA.65.44 read from T0287.t2k.many.frag # found chain 1y6xA in training set T0287 65 :LRNYMKDYR 1y6xA 45 :LLEEAGEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10416 # 1dlwA.65.77 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 65 :LRNYMKDYR 1dlwA 78 :FTTVIGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10417 # 1fjgI.65.84 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 65 :LRNYMKDYR 1fjgI 85 :LVQYNPDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10418 # 1ail.65.35 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 65 :LRNYMKDYR 1ail 36 :LRRDQKSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10419 # 2au5A.65.88 read from T0287.t2k.many.frag # found chain 2au5A in template set T0287 65 :LRNYMKDYR 2au5A 86 :LARLIRLYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10420 # 1wa5C.66.400 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 66 :RNYMKDYRA 1wa5C 401 :LAHMKGFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10421 # 2f5xA.66.293 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 66 :RNYMKDYRA 2f5xA 282 :KQQVPQWAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10422 # 1bgf.66.106 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 66 :RNYMKDYRA 1bgf 106 :SNCLREERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10423 # 1qoyA.66.226 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 66 :RNYMKDYRA 1qoyA 212 :KNKLKSVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10424 # 1txjA.66.91 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 66 :RNYMKDYRA 1txjA 92 :KNYMQKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10425 # 1fjgT.66.81 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 66 :RNYMKDYRA 1fjgT 82 :SRLMRKVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10426 # 1muwA.66.67 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 66 :RNYMKDYRA 1muwA 68 :ESHIKRFRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10427 # 1zc6A.66.232 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 66 :RNYMKDYRA 1zc6A 233 :RQAGEDAWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10428 # 1xp8A.66.186 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 66 :RNYMKDYRA 1xp8A 184 :SQALRKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10429 # 1psrA.66.35 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 66 :RNYMKDYRA 1psrA 36 :KENFPNFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10430 # 2mhr.66.51 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 66 :RNYMKDYRA 2mhr 52 :TNHFTHEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10431 # 1i60A.66.121 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 66 :RNYMKDYRA 1i60A 122 :VDVLTELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10432 # 1eyqA.66.107 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 66 :RNYMKDYRA 1eyqA 108 :RKVMENCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10433 # 1hs6A.66.429 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 66 :RNYMKDYRA 1hs6A 429 :YSYFKDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10434 # 1h7cA.66.71 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 66 :RNYMKDYRA 1h7cA 72 :EAAYLDLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10435 # 1a6m.66.135 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 66 :RNYMKDYRA 1a6m 136 :ELFRKDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10436 # 1mw9X.66.564 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 66 :RNYMKDYRA 1mw9X 565 :DHFFSDFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10437 # 1hw1A.66.189 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 66 :RNYMKDYRA 1hw1A 190 :LGFYHKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10438 # 1b5l.66.120 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 66 :RNYMKDYRA 1b5l 121 :KKYFQGIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10439 # 1ytaA.66.115 read from T0287.t2k.many.frag # found chain 1ytaA in template set T0287 66 :RNYMKDYRA 1ytaA 116 :FKYMPELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10440 # 1iuqA.66.37 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 66 :RNYMKDYRA 1iuqA 39 :EELYQNYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10441 # 1j5wA.66.225 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 66 :RNYMKDYRA 1j5wA 214 :DEYEKEFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10442 # 1fkmA.66.61 read from T0287.t2k.many.frag # found chain 1fkmA in template set T0287 66 :RNYMKDYRA 1fkmA 309 :QRKRKEYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10443 # 1fjgI.66.85 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 66 :RNYMKDYRA 1fjgI 86 :VQYNPDYRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10444 # 1ail.66.36 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 66 :RNYMKDYRA 1ail 37 :RRDQKSLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10445 # 1dlwA.66.78 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 66 :RNYMKDYRA 1dlwA 79 :TTVIGHLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10446 # 1p4cA.66.326 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 66 :RNYMKDYRA 1p4cA 327 :TLLKADIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10447 # 1zk8A.66.116 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 66 :RNYMKDYRA 1zk8A 117 :DGIVKLCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10448 # 1yacA.66.187 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 66 :RNYMKDYRA 1yacA 188 :SNHIPDYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10449 # 1yviA.66.75 read from T0287.t2k.many.frag # found chain 1yviA in template set T0287 66 :RNYMKDYRA 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10450 # 2f5xA.67.294 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 67 :NYMKDYRAV 2f5xA 283 :QQVPQWAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10451 # 1wa5C.67.401 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 67 :NYMKDYRAV 1wa5C 402 :AHMKGFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10452 # 1fjgT.67.82 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 67 :NYMKDYRAV 1fjgT 83 :RLMRKVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10453 # 1muwA.67.68 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 67 :NYMKDYRAV 1muwA 69 :SHIKRFRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10454 # 1bgf.67.107 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 67 :NYMKDYRAV 1bgf 107 :NCLREERRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10455 # 1xp8A.67.187 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 67 :NYMKDYRAV 1xp8A 185 :QALRKLTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10456 # 1fjgI.67.86 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 67 :NYMKDYRAV 1fjgI 87 :QYNPDYRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10457 # 2mhr.67.52 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 67 :NYMKDYRAV 2mhr 53 :NHFTHEEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10458 # 1iuqA.67.38 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 67 :NYMKDYRAV 1iuqA 40 :ELYQNYRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10459 # 1zc6A.67.233 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 67 :NYMKDYRAV 1zc6A 234 :QAGEDAWAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10460 # 1eyqA.67.108 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 67 :NYMKDYRAV 1eyqA 109 :KVMENCVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10461 # 1qoyA.67.227 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 67 :NYMKDYRAV 1qoyA 213 :NKLKSVQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10462 # 1txjA.67.92 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 67 :NYMKDYRAV 1txjA 93 :NYMQKILKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10463 # 1hw1A.67.190 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 67 :NYMKDYRAV 1hw1A 191 :GFYHKLSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10464 # 1dlwA.67.79 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 67 :NYMKDYRAV 1dlwA 80 :TVIGHLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10465 # 1psrA.67.36 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 67 :NYMKDYRAV 1psrA 37 :ENFPNFLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10466 # 1a6m.67.136 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 67 :NYMKDYRAV 1a6m 137 :LFRKDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10467 # 1h7cA.67.72 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 67 :NYMKDYRAV 1h7cA 73 :AAYLDLQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10468 # 1hs6A.67.430 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 67 :NYMKDYRAV 1hs6A 430 :SYFKDKVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10469 # 1i60A.67.122 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 67 :NYMKDYRAV 1i60A 123 :DVLTELSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10470 # 1zk8A.67.117 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 67 :NYMKDYRAV 1zk8A 118 :GIVKLCLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10471 # 1b5l.67.121 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 67 :NYMKDYRAV 1b5l 122 :KYFQGIYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10472 # 1p4cA.67.327 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 67 :NYMKDYRAV 1p4cA 328 :LLKADIDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10473 # 1fkmA.67.62 read from T0287.t2k.many.frag # found chain 1fkmA in template set T0287 67 :NYMKDYRAV 1fkmA 310 :RKRKEYRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10474 # 1mw9X.67.565 read from T0287.t2k.many.frag # found chain 1mw9X in training set T0287 67 :NYMKDYRAV 1mw9X 566 :HFFSDFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10475 # 1j5wA.67.226 read from T0287.t2k.many.frag # found chain 1j5wA in template set T0287 67 :NYMKDYRAV 1j5wA 215 :EYEKEFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10476 # 1uw4B.67.80 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 67 :NYMKDYRAV 1uw4B 848 :GVLEDIRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10477 # 1m48A.67.60 read from T0287.t2k.many.frag # found chain 1m48A in template set T0287 67 :NYMKDYRAV 1m48A 61 :EELKPLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10478 # 1ail.67.37 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 67 :NYMKDYRAV 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10479 # 1yacA.67.188 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 67 :NYMKDYRAV 1yacA 189 :NHIPDYRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10480 # 2f5xA.68.295 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 68 :YMKDYRAVI 2f5xA 284 :QVPQWAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10481 # 1fjgI.68.87 read from T0287.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 68 :YMKDYRA 1fjgI 88 :YNPDYRA T0287 76 :I 1fjgI 96 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=10483 # 1wa5C.68.402 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 68 :YMKDYRAVI 1wa5C 403 :HMKGFVDQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10484 # 1fjgT.68.83 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 68 :YMKDYRAVI 1fjgT 84 :LMRKVRQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10485 # 1muwA.68.69 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 68 :YMKDYRAVI 1muwA 70 :HIKRFRQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10486 # 1bgf.68.108 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 68 :YMKDYRAVI 1bgf 108 :CLREERRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10487 # 1psrA.68.37 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 68 :YMKDYRAVI 1psrA 38 :NFPNFLSAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10488 # 2mhr.68.53 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 68 :YMKDYRAVI 2mhr 54 :HFTHEEAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10489 # 1dlwA.68.80 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 68 :YMKDYRAVI 1dlwA 81 :VIGHLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10490 # 1iuqA.68.39 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 68 :YMKDYRAVI 1iuqA 41 :LYQNYRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10491 # 1xp8A.68.188 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 68 :YMKDYRAVI 1xp8A 186 :ALRKLTAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10492 # 1eyqA.68.109 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 68 :YMKDYRAVI 1eyqA 110 :VMENCVAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10493 # 1hw1A.68.191 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 68 :YMKDYRAVI 1hw1A 192 :FYHKLSALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10494 # 1zc6A.68.234 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 68 :YMKDYRAVI 1zc6A 235 :AGEDAWAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10495 # 1txjA.68.93 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 68 :YMKDYRAVI 1txjA 94 :YMQKILKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10496 # 1yacA.68.189 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 68 :YMKDYRAVI 1yacA 190 :HIPDYRNLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10497 # 1hs6A.68.431 read from T0287.t2k.many.frag # found chain 1hs6A in template set T0287 68 :YMKDYRAVI 1hs6A 431 :YFKDKVDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10498 # 1h7cA.68.73 read from T0287.t2k.many.frag # found chain 1h7cA in training set T0287 68 :YMKDYRAVI 1h7cA 74 :AYLDLQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10499 # 1qoyA.68.228 read from T0287.t2k.many.frag # found chain 1qoyA in template set T0287 68 :YMKDYRAVI 1qoyA 214 :KLKSVQNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10500 # 1yqyA.68.53 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 68 :YMKDYRAVI 1yqyA 311 :LSQEEKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10501 # 1a6m.68.137 read from T0287.t2k.many.frag # found chain 1a6m in training set T0287 68 :YMKDYRAVI 1a6m 138 :FRKDIAAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10502 # 1ail.68.38 read from T0287.t2k.many.frag # found chain 1ail in template set T0287 68 :YMKDYRAVI 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10503 # 1i60A.68.123 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 68 :YMKDYRAVI 1i60A 124 :VLTELSDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10504 # 1p4cA.68.328 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 68 :YMKDYRAVI 1p4cA 329 :LKADIDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10505 # 1a8o.68.43 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 68 :YMKDYRAVI 1a8o 194 :ANPDCKTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10506 # 1zk8A.68.118 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 68 :YMKDYRAVI 1zk8A 119 :IVKLCLQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10507 # 1b5l.68.122 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 68 :YMKDYRAVI 1b5l 123 :YFQGIYDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10508 # 1cxqA.68.115 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 68 :YMKDYRAVI 1cxqA 163 :LKDKIRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10509 # 2f6hX.68.76 read from T0287.t2k.many.frag # found chain 2f6hX in template set T0287 68 :YMKDYRAVI 2f6hX 98 :VLTTIQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10510 # 1uw4B.68.81 read from T0287.t2k.many.frag # found chain 1uw4B in template set T0287 68 :YMKDYRAVI 1uw4B 849 :VLEDIRLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10511 # 2f5xA.69.296 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 69 :MKDYRAVIK 2f5xA 285 :VPQWAELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10512 # 1fjgI.69.88 read from T0287.t2k.many.frag # found chain 1fjgI in template set T0287 69 :MKDYRAVIK 1fjgI 89 :NPDYRAKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10513 # 2mhr.69.54 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 69 :MKDYRAVIK 2mhr 55 :FTHEEAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10514 # 1fjgT.69.84 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 69 :MKDYRAVIK 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10515 # 1iuqA.69.40 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 69 :MKDYRAVIK 1iuqA 42 :YQNYRNAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10516 # 1hw1A.69.192 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 69 :MKDYRAVIK 1hw1A 193 :YHKLSALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10517 # 1dlwA.69.81 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 69 :MKDYRAVIK 1dlwA 82 :IGHLRSALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10518 # 1xp8A.69.189 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 69 :MKDYRAVIK 1xp8A 187 :LRKLTAILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10519 # 1muwA.69.70 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 69 :MKDYRAVIK 1muwA 71 :IKRFRQALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10520 # 1eyqA.69.110 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 69 :MKDYRAVIK 1eyqA 111 :MENCVAHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10521 # 1psrA.69.38 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 69 :MKDYRAVIK 1psrA 39 :FPNFLSACD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10522 # 1bgf.69.109 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 69 :MKDYRAVIK 1bgf 109 :LREERRILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10523 # 1yqyA.69.54 read from T0287.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)M69 (1yqyA)S312 because P (beta_P) conformation "forbidden" or filtered. T0287 70 :KDYRAVIK 1yqyA 313 :QEEKELLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10524 # 1wa5C.69.403 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 69 :MKDYRAVIK 1wa5C 404 :MKGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10525 # 1bxyA.69.15 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 69 :MKDYRAVIK 1bxyA 16 :PKDQKAALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10526 # 1eexA.69.415 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 69 :MKDYRAVIK 1eexA 416 :ARALQAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10527 # 1i60A.69.124 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 69 :MKDYRAVIK 1i60A 125 :LTELSDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10528 # 2f6hX.69.77 read from T0287.t2k.many.frag # found chain 2f6hX in template set T0287 69 :MKDYRAVIK 2f6hX 99 :LTTIQKVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10529 # 1cxqA.69.116 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 69 :MKDYRAVIK 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10530 # 1zk8A.69.119 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 69 :MKDYRAVIK 1zk8A 120 :VKLCLQVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10531 # 1ajsA.69.333 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 69 :MKDYRAVIK 1ajsA 334 :RSELRARLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10532 # 1t0fA.69.197 read from T0287.t2k.many.frag # found chain 1t0fA in template set T0287 69 :MKDYRAVIK 1t0fA 195 :LSPLAHILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10533 # 1a8o.69.44 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 69 :MKDYRAVIK 1a8o 195 :NPDCKTILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10534 # 1zc6A.69.235 read from T0287.t2k.many.frag # found chain 1zc6A in template set T0287 69 :MKDYRAVIK 1zc6A 236 :GEDAWAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10535 # 1yacA.69.190 read from T0287.t2k.many.frag # found chain 1yacA in training set T0287 69 :MKDYRAVIK 1yacA 191 :IPDYRNLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10536 # 1txjA.69.94 read from T0287.t2k.many.frag # found chain 1txjA in template set T0287 69 :MKDYRAVIK 1txjA 95 :MQKILKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10537 # 1b5l.69.123 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 69 :MKDYRAVIK 1b5l 124 :FQGIYDYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10538 # 1p4cA.69.329 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 69 :MKDYRAVIK 1p4cA 330 :KADIDRTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10539 # 8abp.69.117 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 69 :MKDYRAVIK 8abp 118 :GQELYKEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10540 # 2f22A.69.119 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 69 :MKDYRAVIK 2f22A 119 :QGQYYVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10541 # 2f5xA.70.297 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 70 :KDYRAVIKS 2f5xA 286 :PQWAELFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10542 # 2mhr.70.55 read from T0287.t2k.many.frag # found chain 2mhr in training set T0287 70 :KDYRAVIKS 2mhr 56 :THEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10543 # 1fjgT.70.85 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 70 :KDYRAVIKS 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10544 # 1dlwA.70.82 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 70 :KDYRAVIKS 1dlwA 83 :GHLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10545 # 1eyqA.70.111 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 70 :KDYRAVIKS 1eyqA 112 :ENCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10546 # 1hw1A.70.193 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 70 :KDYRAVIKS 1hw1A 194 :HKLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10547 # 1eexA.70.416 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 70 :KDYRAVIKS 1eexA 417 :RALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10548 # 1iuqA.70.41 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 70 :KDYRAVIKS 1iuqA 43 :QNYRNAVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10549 # 1xp8A.70.190 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 70 :KDYRAVIKS 1xp8A 188 :RKLTAILSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10550 # 1yqyA.70.55 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 70 :KDYRAVIKS 1yqyA 313 :QEEKELLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10551 # 1fjgI.70.89 read from T0287.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 70 :KDYRA 1fjgI 90 :PDYRA T0287 76 :IKS 1fjgI 96 :LKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10553 # 2f6hX.70.78 read from T0287.t2k.many.frag # found chain 2f6hX in template set T0287 70 :KDYRAVIKS 2f6hX 100 :TTIQKVVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10554 # 1bgf.70.110 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 70 :KDYRAVIKS 1bgf 110 :REERRILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10555 # 1psrA.70.39 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 70 :KDYRAVIKS 1psrA 40 :PNFLSACDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10556 # 1bxyA.70.16 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 70 :KDYRAVIKS 1bxyA 17 :KDQKAALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10557 # 1muwA.70.71 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 70 :KDYRAVIKS 1muwA 72 :KRFRQALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10558 # 1cxqA.70.117 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 70 :KDYRAVIKS 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10559 # 1a8o.70.45 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 70 :KDYRAVIKS 1a8o 196 :PDCKTILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10560 # 1y0zA.70.74 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 70 :KDYRAVIKS 1y0zA 75 :DDFNDVVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10561 # 1t0fA.70.198 read from T0287.t2k.many.frag # found chain 1t0fA in template set T0287 70 :KDYRAVIKS 1t0fA 196 :SPLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10562 # 1p4cA.70.330 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 70 :KDYRAVIKS 1p4cA 331 :ADIDRTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10563 # 2f22A.70.120 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 70 :KDYRAVIKS 2f22A 120 :GQYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10564 # 1zk8A.70.120 read from T0287.t2k.many.frag # found chain 1zk8A in template set T0287 70 :KDYRAVIKS 1zk8A 121 :KLCLQVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10565 # 1i60A.70.125 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 70 :KDYRAVIKS 1i60A 126 :TELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10566 # 1wa5C.70.404 read from T0287.t2k.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wa5C)N418 T0287 70 :KDYRAVIK 1wa5C 405 :KGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10567 # 1b5l.70.124 read from T0287.t2k.many.frag # found chain 1b5l in template set T0287 70 :KDYRAVIKS 1b5l 125 :QGIYDYLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10568 # 1pa7A.70.75 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 70 :KDYRAVIKS 1pa7A 76 :KILQAGFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10569 # 1mn8A.70.17 read from T0287.t2k.many.frag # found chain 1mn8A in training set T0287 70 :KDYRAVIKS 1mn8A 17 :KDVERIAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10570 # 8abp.70.118 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 70 :KDYRAVIKS 8abp 119 :QELYKEMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10571 # 1y2qA.70.61 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 70 :KDYRAVIKS 1y2qA 62 :EEISKVAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10572 # 2f5xA.71.298 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 71 :DYRAVIKSI 2f5xA 287 :QWAELFKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10573 # 1fjgT.71.86 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 71 :DYRAVIKSI 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10574 # 2mhr.71.56 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 T0287 71 :DYRAVIKS 2mhr 57 :HEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10575 # 1yqyA.71.56 read from T0287.t2k.many.frag # found chain 1yqyA in template set T0287 71 :DYRAVIKSI 1yqyA 314 :EEKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10576 # 1eyqA.71.112 read from T0287.t2k.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1eyqA 113 :NCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=10577 # 1hw1A.71.194 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 71 :DYRAVIKSI 1hw1A 195 :KLSALCSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10578 # 1iuqA.71.42 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 71 :DYRAVIKSI 1iuqA 44 :NYRNAVIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=10579 # 1xp8A.71.191 read from T0287.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0287)S78 (1xp8A)K196 because D (zeta) conformation "forbidden" or filtered. T0287 71 :DYRAVIK 1xp8A 189 :KLTAILS T0287 79 :I 1xp8A 197 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=10581 # 1dlwA.71.83 read from T0287.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0287)I79 (1dlwA)A92 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1dlwA 84 :HLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10582 # 1bxyA.71.17 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 71 :DYRAVIKSI 1bxyA 18 :DQKAALKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10583 # 2f6hX.71.79 read from T0287.t2k.many.frag # found chain 2f6hX in template set T0287 71 :DYRAVIKSI 2f6hX 101 :TIQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10584 # 1eexA.71.417 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 71 :DYRAVIKSI 1eexA 418 :ALQAVFAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10585 # 1a8o.71.46 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 71 :DYRAVIKSI 1a8o 197 :DCKTILKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10586 # 1psrA.71.40 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 71 :DYRAVIKSI 1psrA 41 :NFLSACDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10587 # 1t0fA.71.199 read from T0287.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1t0fA 197 :PLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=10588 # 1y0zA.71.75 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 71 :DYRAVIKSI 1y0zA 76 :DFNDVVEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10589 # 2f22A.71.121 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 71 :DYRAVIKSI 2f22A 121 :QYYVALKQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10590 # 1y2qA.71.62 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 71 :DYRAVIKSI 1y2qA 63 :EISKVAEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10591 # 1p4cA.71.331 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 71 :DYRAVIKSI 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10592 # 1i60A.71.126 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 71 :DYRAVIKSI 1i60A 127 :ELSDIAEPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10593 # 1fjgI.71.90 read from T0287.t2k.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRA 1fjgI 91 :DYRA T0287 76 :IKSI 1fjgI 96 :LKPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10595 # 1ajsA.71.335 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 71 :DYRAVIKSI 1ajsA 336 :ELRARLEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10596 # 1bgf.71.111 read from T0287.t2k.many.frag # found chain 1bgf in training set T0287 71 :DYRAVIKSI 1bgf 111 :EERRILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10597 # 1pa7A.71.76 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 71 :DYRAVIKSI 1pa7A 77 :ILQAGFKRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10598 # 1muwA.71.72 read from T0287.t2k.many.frag # found chain 1muwA in training set T0287 71 :DYRAVIKSI 1muwA 73 :RFRQALDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10599 # 1cxqA.71.118 read from T0287.t2k.many.frag # found chain 1cxqA in training set Warning: unaligning (T0287)I79 (1cxqA)D174 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1cxqA 166 :KIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10600 # 1rcwA.71.183 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 71 :DYRAVIKSI 1rcwA 184 :EEKALIEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=10601 # 1mn8A.71.18 read from T0287.t2k.many.frag # found chain 1mn8A in training set T0287 71 :DYRAVIKSI 1mn8A 18 :DVERIAHNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10602 # 8abp.71.119 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 71 :DYRAVIKSI 8abp 120 :ELYKEMQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10603 # 2ajtA.71.212 read from T0287.t2k.many.frag # found chain 2ajtA in template set T0287 71 :DYRAVIKSI 2ajtA 213 :DLVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10604 # 2f5xA.72.299 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 72 :YRAVIKSIG 2f5xA 288 :WAELFKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10605 # 1fjgT.72.87 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 72 :YRAVIKSIG 1fjgT 88 :VRQLLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10606 # 1yqyA.72.57 read from T0287.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1yqyA 315 :EKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10607 # 2mhr.72.57 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 72 :YRAVIKS 2mhr 58 :EEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10608 # 1eyqA.72.113 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 72 :YRAVIKSIG 1eyqA 114 :CVAHLKSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10609 # 1bxyA.72.18 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 72 :YRAVIKSIG 1bxyA 19 :QKAALKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10610 # 1eexA.72.418 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 72 :YRAVIKSIG 1eexA 419 :LQAVFAGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10611 # 1y0zA.72.76 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 72 :YRAVIKSIG 1y0zA 77 :FNDVVEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10612 # 1y2qA.72.63 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 72 :YRAVIKSIG 1y2qA 64 :ISKVAEQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10613 # 1xp8A.72.192 read from T0287.t2k.many.frag # found chain 1xp8A in template set Warning: unaligning (T0287)I79 (1xp8A)T197 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1xp8A 190 :LTAILSK T0287 80 :G 1xp8A 198 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=10615 # 1hw1A.72.195 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1hw1A 196 :LSALCSE T0287 80 :G 1hw1A 204 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=10617 # 1iuqA.72.43 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 72 :YRAVIKSIG 1iuqA 45 :YRNAVIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10618 # 1dlwA.72.84 read from T0287.t2k.many.frag # found chain 1dlwA in training set T0287 72 :YRAVIKSIG 1dlwA 85 :LRSALTGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10619 # 1t0fA.72.200 read from T0287.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)G80 (1t0fA)G206 because H (helix) conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1t0fA 198 :LAHILQEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10620 # 2f22A.72.122 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 72 :YRAVIKSIG 2f22A 122 :YYVALKQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10621 # 2f6hX.72.80 read from T0287.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)S78 (2f6hX)Q108 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. T0287 72 :YRAVIK 2f6hX 102 :IQKVVT T0287 79 :I 2f6hX 109 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=10623 # 1a8o.72.47 read from T0287.t2k.many.frag # found chain 1a8o in training set T0287 72 :YRAVIKSIG 1a8o 198 :CKTILKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10624 # 1psrA.72.41 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 72 :YRAVIKSIG 1psrA 42 :FLSACDKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10625 # 1cxqA.72.119 read from T0287.t2k.many.frag # found chain 1cxqA in training set Warning: unaligning (T0287)I79 (1cxqA)D174 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1cxqA 167 :IRVLAEG T0287 80 :G 1cxqA 175 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=10627 # 1pa7A.72.77 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 72 :YRAVIKSIG 1pa7A 78 :LQAGFKRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10628 # 1k3yA.72.134 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)I79 (1k3yA)H143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 T0287 72 :YRAVIKS 1k3yA 136 :FEKVLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=10629 # 1p4cA.72.332 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 72 :YRAVIKSIG 1p4cA 333 :IDRTLAQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10630 # 1ve4A.72.18 read from T0287.t2k.many.frag # found chain 1ve4A in template set T0287 72 :YRAVIKSIG 1ve4A 19 :AYEVLKRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10631 # 2bu3A.72.138 read from T0287.t2k.many.frag # found chain 2bu3A in template set T0287 72 :YRAVIKSIG 2bu3A 128 :LGRLIASYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10632 # 1rcwA.72.184 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 72 :YRAVIKSIG 1rcwA 185 :EKALIEMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10633 # 1s1dA.72.195 read from T0287.t2k.many.frag # found chain 1s1dA in training set T0287 72 :YRAVIKSIG 1s1dA 196 :YNALRAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10634 # 2ajtA.72.213 read from T0287.t2k.many.frag # found chain 2ajtA in template set T0287 72 :YRAVIKSIG 2ajtA 214 :LVQVVNSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10635 # 1ajsA.72.336 read from T0287.t2k.many.frag # found chain 1ajsA in training set T0287 72 :YRAVIKSIG 1ajsA 337 :LRARLEALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10636 # 1i60A.72.127 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 72 :YRAVIKSIG 1i60A 128 :LSDIAEPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10637 # 1f5mA.72.52 read from T0287.t2k.many.frag # found chain 1f5mA in template set T0287 72 :YRAVIKSIG 1f5mA 53 :IWHAYKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10638 # 2f5xA.73.300 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 73 :RAVIKSIGV 2f5xA 289 :AELFKKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10639 # 1yqyA.73.58 read from T0287.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 73 :RAVIKSI 1yqyA 316 :KELLKRI T0287 81 :V 1yqyA 324 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=10641 # 2mhr.73.58 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 73 :RAVIKS 2mhr 59 :EAMMDA T0287 81 :V 2mhr 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=10643 # 1fjgT.73.88 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 73 :RAVIKSIGV 1fjgT 89 :RQLLEAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10644 # 1bxyA.73.19 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 73 :RAVIKSIGV 1bxyA 20 :KAALKALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10645 # 1iuqA.73.44 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 73 :RAVIKSIGV 1iuqA 46 :RNAVIESGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10646 # 1hw1A.73.196 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1hw1A 197 :SALCSE T0287 81 :V 1hw1A 205 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=10648 # 1eexA.73.419 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 73 :RAVIKSIGV 1eexA 420 :QAVFAGMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10649 # 1psrA.73.42 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1psrA 43 :LSACDK T0287 80 :GV 1psrA 50 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10651 # 1t0fA.73.201 read from T0287.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1t0fA 199 :AHILQE T0287 80 :GV 1t0fA 206 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10653 # 1y0zA.73.77 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 73 :RAVIKSIGV 1y0zA 78 :NDVVEAFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10654 # 1eyqA.73.114 read from T0287.t2k.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1eyqA 115 :VAHLKS T0287 80 :GV 1eyqA 122 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10656 # 2f6hX.73.81 read from T0287.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)V81 (2f6hX)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 73 :RAVIKSIG 2f6hX 103 :QKVVTQLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10657 # 1y2qA.73.64 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 73 :RAVIKSIGV 1y2qA 65 :SKVAEQVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10658 # 1dlwA.73.85 read from T0287.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0287)I79 (1dlwA)A92 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1dlwA 86 :RSALTG T0287 80 :GV 1dlwA 93 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10660 # 1xp8A.73.193 read from T0287.t2k.many.frag # found chain 1xp8A in template set T0287 73 :RAVIKSIGV 1xp8A 191 :TAILSKTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10661 # 2f22A.73.123 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 73 :RAVIKSIGV 2f22A 123 :YVALKQSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10662 # 1pa7A.73.78 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 73 :RAVIKSIGV 1pa7A 79 :QAGFKRMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10663 # 1ve4A.73.19 read from T0287.t2k.many.frag # found chain 1ve4A in template set T0287 73 :RAVIKSIGV 1ve4A 20 :YEVLKRAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10664 # 1f5mA.73.53 read from T0287.t2k.many.frag # found chain 1f5mA in template set T0287 73 :RAVIKSIGV 1f5mA 54 :WHAYKSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10665 # 1a8o.73.48 read from T0287.t2k.many.frag # found chain 1a8o in training set Warning: unaligning (T0287)S78 (1a8o)A204 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIK 1a8o 199 :KTILK T0287 79 :IGV 1a8o 205 :LGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=10667 # 1cxqA.73.120 read from T0287.t2k.many.frag # found chain 1cxqA in training set T0287 73 :RAVIKSIGV 1cxqA 168 :RVLAEGDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10668 # 1k3yA.73.135 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 73 :RAVIKSI 1k3yA 137 :EKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=10669 # 1v4vA.73.83 read from T0287.t2k.many.frag # found chain 1v4vA in training set Warning: unaligning (T0287)I79 (1v4vA)M90 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1v4vA 84 :ARALKE T0287 80 :GV 1v4vA 91 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10671 # 2bu3A.73.139 read from T0287.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0287)I79 (2bu3A)Y135 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 2bu3A 129 :GRLIAS T0287 80 :GV 2bu3A 136 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10673 # 1p4cA.73.333 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 73 :RAVIKSIGV 1p4cA 334 :DRTLAQIGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=10674 # 1smbA.73.17 read from T0287.t2k.many.frag # found chain 1smbA in training set T0287 73 :RAVIKSIGV 1smbA 18 :NEYRQKHGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10675 # 1s1dA.73.196 read from T0287.t2k.many.frag # found chain 1s1dA in training set T0287 73 :RAVIKSIGV 1s1dA 197 :NALRAAAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10676 # 2f8lA.73.70 read from T0287.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. T0287 73 :RAVIKSI 2f8lA 59 :QASYESI T0287 81 :V 2f8lA 67 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=10678 # 1yviA.73.82 read from T0287.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 T0287 73 :RAVIKSIG 1yviA 83 :KGSSASVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10679 # 1pa7A.74.79 read from T0287.t2k.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)I79 (1pa7A)M85 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1pa7A 80 :AGFKR T0287 80 :GVD 1pa7A 86 :GVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10681 # 2f5xA.74.301 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 74 :AVIKSIGVD 2f5xA 290 :ELFKKAGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10682 # 1iuqA.74.45 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 74 :AVIKSIGVD 1iuqA 47 :NAVIESGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10683 # 2mhr.74.59 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 74 :AVIKS 2mhr 60 :AMMDA T0287 81 :VD 2mhr 67 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10685 # 1smbA.74.18 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1smbA 19 :EYRQKHGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=10686 # 1bxyA.74.20 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 74 :AVIKSIGVD 1bxyA 21 :AALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10687 # 1y0zA.74.78 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 74 :AVIKSIGVD 1y0zA 79 :DVVEAFGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10688 # 1eexA.74.420 read from T0287.t2k.many.frag # found chain 1eexA in training set T0287 74 :AVIKSIGVD 1eexA 421 :AVFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10689 # 1psrA.74.43 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 74 :AVIKSIGVD 1psrA 44 :SACDKKGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10690 # 1f5mA.74.54 read from T0287.t2k.many.frag # found chain 1f5mA in template set T0287 74 :AVIKSIGVD 1f5mA 55 :HAYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10691 # 1yqyA.74.59 read from T0287.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 74 :AVIKSI 1yqyA 317 :ELLKRI T0287 81 :VD 1yqyA 324 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=10693 # 1fjgT.74.89 read from T0287.t2k.many.frag # found chain 1fjgT in template set T0287 74 :AVIKSIGVD 1fjgT 90 :QLLEAAGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10694 # 2f22A.74.124 read from T0287.t2k.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)D82 (2f22A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 2f22A 124 :VALKQSGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10695 # 1t0fA.74.202 read from T0287.t2k.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)I79 (1t0fA)K205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1t0fA)E208 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKS 1t0fA 200 :HILQE T0287 80 :GV 1t0fA 206 :GD Number of specific fragments extracted= 2 number of extra gaps= 2 total=10697 # 1z3eB.74.21 read from T0287.t2k.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1z3eB 264 :NCLKR T0287 80 :GVD 1z3eB 270 :GIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=10699 # 1w0hA.74.160 read from T0287.t2k.many.frag # found chain 1w0hA in training set Warning: unaligning (T0287)I79 (1w0hA)L284 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1w0hA 279 :IMLEK T0287 80 :GVD 1w0hA 285 :GMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10701 # 1q0uA.74.16 read from T0287.t2k.many.frag # found chain 1q0uA in template set Warning: unaligning (T0287)I79 (1q0uA)L22 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1q0uA 17 :EAIKT T0287 80 :GVD 1q0uA 23 :RFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10703 # 1eyqA.74.115 read from T0287.t2k.many.frag # found chain 1eyqA in template set T0287 74 :AVIKSIGVD 1eyqA 116 :AHLKSVGTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10704 # 1ve4A.74.20 read from T0287.t2k.many.frag # found chain 1ve4A in template set T0287 74 :AVIKSIGVD 1ve4A 21 :EVLKRAGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10705 # 1s1dA.74.197 read from T0287.t2k.many.frag # found chain 1s1dA in training set T0287 74 :AVIKSIGVD 1s1dA 198 :ALRAAAGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10706 # 1k3yA.74.136 read from T0287.t2k.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 74 :AVIKSI 1k3yA 138 :KVLKSH T0287 82 :D 1k3yA 146 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=10708 # 1y2qA.74.65 read from T0287.t2k.many.frag # found chain 1y2qA in template set T0287 74 :AVIKSIGVD 1y2qA 66 :KVAEQVKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10709 # 1hw1A.74.197 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKS 1hw1A 198 :ALCSE T0287 81 :VD 1hw1A 205 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10711 # 1tqgA.74.49 read from T0287.t2k.many.frag # found chain 1tqgA in training set Warning: unaligning (T0287)I79 (1tqgA)M54 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1tqgA 49 :GMAGT T0287 80 :GVD 1tqgA 55 :GFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10713 # 2f8lA.74.71 read from T0287.t2k.many.frag # found chain 2f8lA in template set T0287 74 :AVIKSIGVD 2f8lA 60 :ASYESIELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10714 # 2fokA.74.329 read from T0287.t2k.many.frag # found chain 2fokA in template set T0287 74 :AVIKSIGVD 2fokA 330 :DNLKKLGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10715 # 1p4cA.74.334 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 74 :AVIKSIGVD 1p4cA 335 :RTLAQIGCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10716 # 8abp.74.122 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 74 :AVIKSIGVD 8abp 123 :KEMQKRGWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10717 # 2f6hX.74.82 read from T0287.t2k.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)S78 (2f6hX)Q108 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 (2f6hX)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 74 :AVIK 2f6hX 104 :KVVT T0287 79 :IG 2f6hX 109 :LK T0287 82 :D 2f6hX 112 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=10720 # 1a62.74.15 read from T0287.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1a62 16 :TLGENMGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=10721 # 1pa7A.75.80 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 75 :VIKSIGVDK 1pa7A 81 :GFKRMGVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10722 # 1smbA.75.19 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGV 1smbA 20 :YRQKHGV T0287 83 :K 1smbA 28 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=10724 # 1iuqA.75.46 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 75 :VIKSIGVDK 1iuqA 48 :AVIESGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10725 # 1psrA.75.44 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 75 :VIKSIGVDK 1psrA 45 :ACDKKGTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10726 # 1y0zA.75.79 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 75 :VIKSIGVDK 1y0zA 80 :VVEAFGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10727 # 1iirA.75.172 read from T0287.t2k.many.frag # found chain 1iirA in training set T0287 75 :VIKSIGVDK 1iirA 173 :HRDAIGLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10728 # 2f5xA.75.302 read from T0287.t2k.many.frag # found chain 2f5xA in template set T0287 75 :VIKSIGVDK 2f5xA 291 :LFKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10729 # 1z3eB.75.22 read from T0287.t2k.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1z3eB 265 :CLKR T0287 80 :GVDK 1z3eB 270 :GINT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10731 # 2f22A.75.125 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 75 :VIKSIGVDK 2f22A 125 :ALKQSGINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10732 # 2fokA.75.330 read from T0287.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)I79 (2fokA)L335 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 2fokA 331 :NLKK T0287 80 :GVDK 2fokA 336 :GFDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10734 # 1tqgA.75.50 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 75 :VIKSIGVDK 1tqgA 50 :MAGTMGFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10735 # 1uocA.75.231 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)I79 (1uocA)L236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1uocA)R240 because N (gamma') conformation "forbidden" or filtered. T0287 75 :VIKS 1uocA 232 :LADE T0287 80 :GVD 1uocA 237 :GLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=10737 # 2mhr.75.60 read from T0287.t2k.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 75 :VIKS 2mhr 61 :MMDA T0287 81 :VDK 2mhr 67 :YSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10739 # 1c1kA.75.122 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 75 :VIKSIGVDK 1c1kA 123 :FSKKVEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10740 # 1kr7A.75.89 read from T0287.t2k.many.frag # found chain 1kr7A in training set T0287 75 :VIKSIGVDK 1kr7A 89 :ACSAHGAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10741 # 1eexA.75.421 read from T0287.t2k.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1eexA)I431 T0287 75 :VIKSIGVD 1eexA 422 :VFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=10742 # 1bxyA.75.21 read from T0287.t2k.many.frag # found chain 1bxyA in template set T0287 75 :VIKSIGVDK 1bxyA 22 :ALKALGLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10743 # 1wu7A.75.247 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1wu7A 248 :LLASYGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=10744 # 1q0uA.75.17 read from T0287.t2k.many.frag # found chain 1q0uA in template set T0287 75 :VIKSIGVDK 1q0uA 18 :AIKTLRFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10745 # 2ar0A.75.75 read from T0287.t2k.many.frag # found chain 2ar0A in template set T0287 75 :VIKSIGVDK 2ar0A 76 :MLVHLGEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10746 # 1bc5A.75.41 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 75 :VIKSIGVDK 1bc5A 57 :RLRALGLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10747 # 1w0hA.75.161 read from T0287.t2k.many.frag # found chain 1w0hA in training set T0287 75 :VIKSIGVDK 1w0hA 280 :MLEKLGMDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10748 # 1hw1A.75.198 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 75 :VIKSIGVDK 1hw1A 199 :LCSEGAHDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10749 # 2f8lA.75.72 read from T0287.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. T0287 75 :VIKSI 2f8lA 61 :SYESI T0287 81 :VDK 2f8lA 67 :LEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=10751 # 1ejbA.75.40 read from T0287.t2k.many.frag # found chain 1ejbA in template set T0287 75 :VIKSIGVDK 1ejbA 41 :RMASLGVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10752 # 1f5mA.75.55 read from T0287.t2k.many.frag # found chain 1f5mA in template set T0287 75 :VIKSIGVDK 1f5mA 56 :AYKSLAVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10753 # 2cx1A.75.81 read from T0287.t2k.many.frag # found chain 2cx1A in template set T0287 75 :VIKSIGVDK 2cx1A 81 :CLKAFGVDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=10754 # 1wteA.75.42 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKS 1wteA 43 :IFDY T0287 80 :GVD 1wteA 48 :SLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=10756 # 8abp.75.123 read from T0287.t2k.many.frag # found chain 8abp in training set T0287 75 :VIKSIGVDK 8abp 124 :EMQKRGWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10757 # 1p4cA.75.335 read from T0287.t2k.many.frag # found chain 1p4cA in training set T0287 75 :VIKSIGVDK 1p4cA 336 :TLAQIGCPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10758 # 1iuqA.76.47 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 76 :IKSIGVDKF 1iuqA 49 :VIESGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10759 # 1iirA.76.173 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)I79 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 1iirA 174 :RDA T0287 80 :GV 1iirA 178 :GL T0287 83 :KF 1iirA 181 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=10762 # 1smbA.76.20 read from T0287.t2k.many.frag # found chain 1smbA in training set T0287 76 :IKSIGVDKF 1smbA 21 :RQKHGVPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10763 # 1kr7A.76.90 read from T0287.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1kr7A 90 :CSAHGA T0287 83 :KF 1kr7A 97 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10765 # 1psrA.76.45 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)D82 (1psrA)N52 because N (gamma') conformation "forbidden" or filtered. T0287 76 :IKSIGV 1psrA 46 :CDKKGT T0287 83 :KF 1psrA 53 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10767 # 1pa7A.76.81 read from T0287.t2k.many.frag # found chain 1pa7A in training set T0287 76 :IKSIGVDKF 1pa7A 82 :FKRMGVDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10768 # 1bc5A.76.42 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 76 :IKSIGVDKF 1bc5A 58 :LRALGLDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10769 # 1z3eB.76.23 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 76 :IKSIGVDKF 1z3eB 266 :LKRAGINTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10770 # 2ar0A.76.76 read from T0287.t2k.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)D82 (2ar0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0287 76 :IKSIGV 2ar0A 77 :LVHLGE T0287 83 :KF 2ar0A 84 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10772 # 2f22A.76.126 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 76 :IKSIGVDKF 2f22A 126 :LKQSGINLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=10773 # 1k8kG.76.82 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1k8kG 83 :LISF T0287 81 :VDKF 1k8kG 88 :ANDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10775 # 1tqgA.76.51 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 76 :IKSIGVDKF 1tqgA 51 :AGTMGFSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=10776 # 2fokA.76.331 read from T0287.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)I79 (2fokA)L335 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 2fokA 332 :LKK T0287 80 :GVDKF 2fokA 336 :GFDEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10778 # 1c1kA.76.123 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 76 :IKSIGVDKF 1c1kA 124 :SKKVEVSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10779 # 1uocA.76.232 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 76 :IKSIGVDKF 1uocA 233 :ADELGLPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10780 # 1y0zA.76.80 read from T0287.t2k.many.frag # found chain 1y0zA in template set T0287 76 :IKSIGVDKF 1y0zA 81 :VEAFGFDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10781 # 1wteA.76.43 read from T0287.t2k.many.frag # found chain 1wteA in template set T0287 76 :IKSIGVDKF 1wteA 44 :FDYHSLNDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10782 # 1ib2A.76.150 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)F84 (1ib2A)L986 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKSIGVDK 1ib2A 978 :IECVQPQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=10783 # 1ejbA.76.41 read from T0287.t2k.many.frag # found chain 1ejbA in template set T0287 76 :IKSIGVDKF 1ejbA 42 :MASLGVEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10784 # 2f5xA.76.303 read from T0287.t2k.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)F84 because last residue in template chain is (2f5xA)Q300 T0287 76 :IKSIGVDK 2f5xA 292 :FKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10785 # 1wu7A.76.248 read from T0287.t2k.many.frag # found chain 1wu7A in template set T0287 76 :IKSIGVDKF 1wu7A 249 :LASYGVKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10786 # 1usgA.76.290 read from T0287.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0287)K83 (1usgA)E298 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1usgA 291 :LERTGSD T0287 84 :F 1usgA 299 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=10788 # 2f8lA.76.73 read from T0287.t2k.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. T0287 76 :IKSI 2f8lA 62 :YESI T0287 81 :VDKF 2f8lA 67 :LENF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10790 # 1hw1A.76.199 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 76 :IKS 1hw1A 200 :CSE T0287 80 :GVDKF 1hw1A 204 :AHDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10792 # 2c5uA.76.329 read from T0287.t2k.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)I79 (2c5uA)A332 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 2c5uA 329 :AKG T0287 80 :GVDKF 2c5uA 333 :GMDHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10794 # 1rp4A.76.271 read from T0287.t2k.many.frag # found chain 1rp4A in template set Warning: unaligning (T0287)I79 (1rp4A)L313 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1rp4A)D314 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 1rp4A 310 :ISQ T0287 81 :VDKF 1rp4A 315 :TKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10796 # 1oqjA.76.48 read from T0287.t2k.many.frag # found chain 1oqjA in training set T0287 76 :IKSIGVDKF 1oqjA 134 :VHLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10797 # 2cx1A.76.82 read from T0287.t2k.many.frag # found chain 2cx1A in template set Warning: unaligning (T0287)V81 (2cx1A)V87 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKSIG 2cx1A 82 :LKAFG T0287 82 :DKF 2cx1A 88 :DWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10799 # 1ojrA.76.259 read from T0287.t2k.many.frag # found chain 1ojrA in training set T0287 76 :IKSIGVDKF 1ojrA 260 :GKRFGVTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10800 # 1a62.76.17 read from T0287.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)I79 (1a62)M21 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0287 76 :IKS 1a62 18 :GEN T0287 80 :GVD 1a62 22 :GLE T0287 84 :F 1a62 26 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=10803 # 1iuqA.77.48 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 77 :KSIGVDKFK 1iuqA 50 :IESGNPKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10804 # 1iirA.77.174 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)I79 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1iirA 175 :DA T0287 80 :GVDKFK 1iirA 178 :GLPPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10806 # 1k8kG.77.83 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1k8kG 84 :ISF T0287 81 :VDKFK 1k8kG 88 :ANDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10808 # 1bc5A.77.43 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 77 :KSIGVDKFK 1bc5A 59 :RALGLDDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10809 # 1kr7A.77.91 read from T0287.t2k.many.frag # found chain 1kr7A in training set T0287 77 :KSIGVDKFK 1kr7A 91 :SAHGAPDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10810 # 1smbA.77.21 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGV 1smbA 22 :QKHGV T0287 83 :KFK 1smbA 28 :PLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10812 # 1hw1A.77.200 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1hw1A 201 :SEG T0287 81 :VDKFK 1hw1A 205 :HDQVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10814 # 1tqgA.77.52 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 77 :KSIGVDKFK 1tqgA 52 :GTMGFSSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10815 # 1wteA.77.44 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSIGVD 1wteA 45 :DYHSLN T0287 84 :FK 1wteA 52 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10817 # 1z3eB.77.24 read from T0287.t2k.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1z3eB 267 :KR T0287 80 :GVDKFK 1z3eB 270 :GINTVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10819 # 1pa7A.77.82 read from T0287.t2k.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)K83 (1pa7A)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGVD 1pa7A 83 :KRMGVD T0287 84 :FK 1pa7A 90 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=10821 # 1ib2A.77.151 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1ib2A 979 :ECV T0287 81 :VDKFK 1ib2A 983 :PQSLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=10823 # 1psrA.77.46 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 77 :KSIGVDKFK 1psrA 47 :DKKGTNYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10824 # 1c1kA.77.124 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 77 :KSIGVDKFK 1c1kA 125 :KKVEVSAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10825 # 2f22A.77.127 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 77 :KSIGVDKFK 2f22A 127 :KQSGINLPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10826 # 1uocA.77.233 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 77 :KSIGVDKFK 1uocA 234 :DELGLPRFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10827 # 2ar0A.77.77 read from T0287.t2k.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)G80 (2ar0A)G81 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSI 2ar0A 78 :VHL T0287 81 :VDKFK 2ar0A 82 :EDDKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10829 # 2c5uA.77.330 read from T0287.t2k.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)F84 (2c5uA)L337 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSIGVDK 2c5uA 330 :KGAGMDH T0287 85 :K 2c5uA 338 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=10831 # 2f8lA.77.74 read from T0287.t2k.many.frag # found chain 2f8lA in template set T0287 77 :KSIGVDKFK 2f8lA 63 :ESIELENFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10832 # 1usgA.77.291 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 77 :KSIGVDKFK 1usgA 292 :ERTGSDEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10833 # 2fokA.77.332 read from T0287.t2k.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)K83 (2fokA)E339 because E (beta_S) conformation "forbidden" or filtered. T0287 77 :KSIGVD 2fokA 333 :KKLGFD T0287 84 :FK 2fokA 340 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10835 # 1wu7A.77.249 read from T0287.t2k.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)I79 (1wu7A)Y252 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 77 :KS 1wu7A 250 :AS T0287 80 :GVD 1wu7A 253 :GVK T0287 84 :FK 1wu7A 257 :VR Number of specific fragments extracted= 3 number of extra gaps= 2 total=10838 # 1ezwA.77.275 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 77 :KSIGV 1ezwA 276 :EAIGK T0287 83 :KFK 1ezwA 282 :DFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=10840 # 1oqjA.77.49 read from T0287.t2k.many.frag # found chain 1oqjA in training set T0287 77 :KSIGVDKFK 1oqjA 135 :HLAGKSTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10841 # 1jy1A.77.183 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 77 :KSIGVDKFK 1jy1A 328 :TAYNAPSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10842 # 1h6gA.77.154 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 77 :KSIGVDKFK 1h6gA 531 :QEKDVDGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10843 # 1a62.77.18 read from T0287.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)I79 (1a62)M21 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1a62 19 :EN T0287 80 :GVDKFK 1a62 22 :GLENLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10845 # 1yviA.77.86 read from T0287.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1yviA)Q92 T0287 77 :KSIG 1yviA 87 :ASVG T0287 83 :KFK 1yviA 93 :KVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10847 # 1q9uA.77.103 read from T0287.t2k.many.frag # found chain 1q9uA in training set T0287 77 :KSIGVDKFK 1q9uA 101 :GMMNDPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10848 # 1sedA.77.62 read from T0287.t2k.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSIGVDK 1sedA 61 :KAQGFVT T0287 85 :K 1sedA 69 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=10850 # 1k8kG.78.84 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 78 :SIGVDKFKK 1k8kG 85 :SFKANDIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10851 # 1bc5A.78.44 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 78 :SIGVDKFKK 1bc5A 60 :ALGLDDFGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10852 # 1iuqA.78.49 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 78 :SIGVDKFKK 1iuqA 51 :ESGNPKADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10853 # 1wteA.78.45 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1wteA 46 :YHSLN T0287 84 :FKK 1wteA 52 :FDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10855 # 1hw1A.78.201 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :S 1hw1A 202 :E T0287 81 :VDKFKK 1hw1A 205 :HDQVYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10857 # 1kr7A.78.92 read from T0287.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)I79 (1kr7A)H93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F84 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 1kr7A 92 :A T0287 80 :GVDK 1kr7A 94 :GAPD T0287 85 :KK 1kr7A 99 :GH Number of specific fragments extracted= 3 number of extra gaps= 2 total=10860 # 1iirA.78.175 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1iirA 176 :AIGL T0287 83 :KFKK 1iirA 181 :PVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=10862 # 1ib2A.78.152 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SI 1ib2A 980 :CV T0287 81 :VDKFKK 1ib2A 983 :PQSLQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10864 # 1tqgA.78.53 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 78 :SIGVDKFKK 1tqgA 53 :TMGFSSMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10865 # 1z3eB.78.25 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 78 :SIGVDKFKK 1z3eB 268 :RAGINTVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10866 # 1h6gA.78.155 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 78 :SIGVDKFKK 1h6gA 532 :EKDVDGLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10867 # 1c1kA.78.125 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 78 :SIGVDKFKK 1c1kA 126 :KVEVSAFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10868 # 1jy1A.78.184 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 78 :SIGVDKFKK 1jy1A 329 :AYNAPSLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10869 # 1smbA.78.22 read from T0287.t2k.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)I79 (1smbA)H24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0287 78 :S 1smbA 23 :K T0287 80 :GVDKFK 1smbA 25 :GVPPLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10871 # 1sedA.78.63 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 78 :SIGVDKFKK 1sedA 62 :AQGFVTFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10872 # 2aeuA.78.252 read from T0287.t2k.many.frag # found chain 2aeuA in template set Warning: unaligning (T0287)G80 (2aeuA)N255 because E (beta_S) conformation "forbidden" or filtered. T0287 78 :SI 2aeuA 253 :NF T0287 81 :VDKFKK 2aeuA 256 :LERIRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10874 # 2c5uA.78.331 read from T0287.t2k.many.frag # found chain 2c5uA in template set T0287 78 :SIGVDKFKK 2c5uA 331 :GAGMDHLFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10875 # 1ezwA.78.276 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 78 :SIG 1ezwA 277 :AIG T0287 83 :KFKK 1ezwA 282 :DFGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=10877 # 1u00A.78.186 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 78 :SIGVDKFKK 1u00A 575 :GDDVDAIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10878 # 1usgA.78.292 read from T0287.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0287)K83 (1usgA)E298 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGVD 1usgA 293 :RTGSD T0287 84 :FKK 1usgA 299 :PLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10880 # 1psrA.78.47 read from T0287.t2k.many.frag # found chain 1psrA in training set T0287 78 :SIGVDKFKK 1psrA 48 :KKGTNYLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10881 # 1sqsA.78.217 read from T0287.t2k.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1sqsA 218 :LFEAN T0287 84 :FKK 1sqsA 224 :LEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10883 # 1zhxA.78.329 read from T0287.t2k.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)I79 (1zhxA)G327 because L (left) conformation "forbidden" or filtered. T0287 78 :S 1zhxA 326 :L T0287 80 :GVDKFKK 1zhxA 328 :DFNLIAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=10885 # 1owlA.78.266 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 78 :SIGVDKFKK 1owlA 267 :LSRSDEARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=10886 # 2f22A.78.128 read from T0287.t2k.many.frag # found chain 2f22A in template set T0287 78 :SIGVDKFKK 2f22A 128 :QSGINLPKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10887 # 1lo7A.78.40 read from T0287.t2k.many.frag # found chain 1lo7A in training set T0287 78 :SIGVDKFKK 1lo7A 41 :KCGLPPWRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10888 # 2fbqA.78.121 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 78 :SIGVDKFKK 2fbqA 120 :SQSQGHLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10889 # 1uvjA.78.179 read from T0287.t2k.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 78 :SIGV 1uvjA 180 :LMLQ T0287 83 :KFKK 1uvjA 185 :KFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10891 # 1uocA.78.234 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)D82 (1uocA)P239 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1uocA)R240 because N (gamma') conformation "forbidden" or filtered. T0287 78 :SIGV 1uocA 235 :ELGL T0287 84 :FKK 1uocA 241 :FSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10893 # 1q9uA.78.104 read from T0287.t2k.many.frag # found chain 1q9uA in training set T0287 78 :SIGVDKFKK 1q9uA 102 :MMNDPALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10894 # 1bc5A.79.45 read from T0287.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1bc5A 62 :GLDDFGRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=10895 # 1k8kG.79.85 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1k8kG)D90 because G (3-10) conformation "forbidden" or filtered. T0287 79 :I 1k8kG 86 :F T0287 81 :VD 1k8kG 88 :AN T0287 84 :FKKV 1k8kG 91 :IEKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=10898 # 1wteA.79.46 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FKKV 1wteA 52 :FDEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=10900 # 1hw1A.79.202 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKV 1hw1A 205 :HDQVYET Number of specific fragments extracted= 1 number of extra gaps= 1 total=10901 # 1h6gA.79.156 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKV 1h6gA 535 :VDGLDRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=10902 # 1sedA.79.64 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 79 :IGVDKFKKV 1sedA 63 :QGFVTFDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10903 # 1ib2A.79.153 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. T0287 79 :I 1ib2A 981 :V T0287 81 :VD 1ib2A 983 :PQ T0287 84 :FKKV 1ib2A 986 :LQFI Number of specific fragments extracted= 3 number of extra gaps= 2 total=10906 # 1kr7A.79.93 read from T0287.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)I79 (1kr7A)H93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F84 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDK 1kr7A 94 :GAPD T0287 85 :KKV 1kr7A 99 :GHA Number of specific fragments extracted= 2 number of extra gaps= 2 total=10908 # 1iuqA.79.50 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 79 :IGVDKFKKV 1iuqA 52 :SGNPKADEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10909 # 1iirA.79.176 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)I79 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1iirA 178 :GLPPVEDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10910 # 2aeuA.79.253 read from T0287.t2k.many.frag # found chain 2aeuA in template set Warning: unaligning (T0287)G80 (2aeuA)N255 because E (beta_S) conformation "forbidden" or filtered. T0287 79 :I 2aeuA 254 :F T0287 81 :VDKFKKV 2aeuA 256 :LERIRKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10912 # 1uvjA.79.180 read from T0287.t2k.many.frag # found chain 1uvjA in template set T0287 79 :IGVDKFKKV 1uvjA 181 :MLQGKFDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10913 # 2fbqA.79.122 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 79 :IGVDKFKKV 2fbqA 121 :QSQGHLRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10914 # 1zhxA.79.330 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 79 :IGVDKFKKV 1zhxA 327 :GDFNLIAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10915 # 1u00A.79.187 read from T0287.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 79 :I 1u00A 576 :D T0287 81 :VDKFKKV 1u00A 578 :VDAIEQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10917 # 1ezwA.79.277 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IG 1ezwA 278 :IG T0287 82 :DKFKKV 1ezwA 281 :GDFGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=10919 # 2f6kA.79.131 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 79 :IGVDKFKKV 2f6kA 132 :FGSPVLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10920 # 1jy1A.79.185 read from T0287.t2k.many.frag # found chain 1jy1A in training set Warning: unaligning (T0287)F84 (1jy1A)L335 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IGVDK 1jy1A 330 :YNAPS T0287 85 :KKV 1jy1A 336 :KEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=10922 # 1z3eB.79.26 read from T0287.t2k.many.frag # found chain 1z3eB in template set T0287 79 :IGVDKFKKV 1z3eB 269 :AGINTVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10923 # 1sqsA.79.218 read from T0287.t2k.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 79 :IGVD 1sqsA 219 :FEAN T0287 84 :FKKV 1sqsA 224 :LEEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=10925 # 1owlA.79.267 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 79 :IGVDKFKKV 1owlA 268 :SRSDEARNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=10926 # 1z3xA.79.107 read from T0287.t2k.many.frag # found chain 1z3xA in template set T0287 79 :IGVDKFKKV 1z3xA 105 :LVAEKFEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10927 # 1tqgA.79.54 read from T0287.t2k.many.frag # found chain 1tqgA in training set T0287 79 :IGVDKFKKV 1tqgA 54 :MGFSSMAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10928 # 1xm9A.79.430 read from T0287.t2k.many.frag # found chain 1xm9A in template set T0287 79 :IGVDKFKKV 1xm9A 674 :SASPKAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10929 # 1c1kA.79.126 read from T0287.t2k.many.frag # found chain 1c1kA in training set T0287 79 :IGVDKFKKV 1c1kA 127 :VEVSAFKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10930 # 1usgA.79.293 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 79 :IGVDKFKKV 1usgA 294 :TGSDEPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10931 # 1rwhA.79.27 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 79 :IGVDKFKKV 1rwhA 28 :AGDPDFAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10932 # 2anuA.79.76 read from T0287.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0287)G80 (2anuA)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 2anuA 65 :I T0287 81 :VDKFKKV 2anuA 67 :EDKFQDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10934 # 2c5uA.79.332 read from T0287.t2k.many.frag # found chain 2c5uA in template set T0287 79 :IGVDKFKKV 2c5uA 332 :AGMDHLFGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10935 # 1psrA.79.48 read from T0287.t2k.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)D82 (1psrA)N52 because N (gamma') conformation "forbidden" or filtered. T0287 79 :IGV 1psrA 49 :KGT T0287 83 :KFKKV 1psrA 53 :YLADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10937 # 1bc5A.80.46 read from T0287.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)K83 (1bc5A)D65 because E (beta_S) conformation "forbidden" or filtered. T0287 80 :GVD 1bc5A 62 :GLD T0287 84 :FKKVY 1bc5A 66 :FGRYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=10939 # 1k8kG.80.86 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 80 :GVDKFKKVY 1k8kG 87 :KANDIEKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10940 # 1sedA.80.65 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 80 :GVDKFKKVY 1sedA 64 :GFVTFDKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10941 # 1ib2A.80.154 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1ib2A 983 :PQSLQFII Number of specific fragments extracted= 1 number of extra gaps= 1 total=10942 # 1wteA.80.47 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FKKVY 1wteA 52 :FDELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=10944 # 1h6gA.80.157 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 80 :GVDKFKKVY 1h6gA 534 :DVDGLDRTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10945 # 1hw1A.80.203 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 80 :GVDKFKKVY 1hw1A 204 :AHDQVYETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10946 # 1uvjA.80.181 read from T0287.t2k.many.frag # found chain 1uvjA in template set T0287 80 :GVDKFKKVY 1uvjA 182 :LQGKFDDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10947 # 2f6kA.80.132 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 80 :GVDKFKKVY 2f6kA 133 :GSPVLERVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10948 # 1ezwA.80.278 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 80 :GV 1ezwA 279 :GK T0287 83 :KFKKVY 1ezwA 282 :DFGTAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=10950 # 1rwhA.80.28 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 80 :GVDKFKKVY 1rwhA 29 :GDPDFAKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10951 # 2aeuA.80.254 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 80 :GVDKFKKVY 2aeuA 255 :NLERIRKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10952 # 1zhxA.80.331 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 80 :GVDKFKKVY 1zhxA 328 :DFNLIAKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10953 # 1z3xA.80.108 read from T0287.t2k.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 80 :GV 1z3xA 106 :VA T0287 83 :KFKKVY 1z3xA 109 :KFEAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=10955 # 2anuA.80.77 read from T0287.t2k.many.frag # found chain 2anuA in template set T0287 80 :GVDKFKKVY 2anuA 66 :TEDKFQDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10956 # 1owlA.80.268 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 80 :GVDKFKKVY 1owlA 269 :RSDEARNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10957 # 1u00A.80.188 read from T0287.t2k.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1u00A 578 :VDAIEQAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=10958 # 2fbqA.80.123 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 80 :GVDKFKKVY 2fbqA 122 :SQGHLRKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10959 # 1sqsA.80.219 read from T0287.t2k.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1sqsA 220 :EAN T0287 84 :FKKVY 1sqsA 224 :LEEWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=10961 # 1kr7A.80.94 read from T0287.t2k.many.frag # found chain 1kr7A in training set T0287 80 :GVDKFKKVY 1kr7A 94 :GAPDLGHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10962 # 1iuqA.80.51 read from T0287.t2k.many.frag # found chain 1iuqA in training set T0287 80 :GVDKFKKVY 1iuqA 53 :GNPKADEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10963 # 1e9rA.80.164 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 80 :GVDKFKKVY 1e9rA 235 :GTPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=10964 # 1jy1A.80.186 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 80 :GVDKFKKVY 1jy1A 331 :NAPSLKEWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=10965 # 1usgA.80.294 read from T0287.t2k.many.frag # found chain 1usgA in training set T0287 80 :GVDKFKKVY 1usgA 295 :GSDEPLALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=10966 # 1iirA.80.177 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K85 (1iirA)E183 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKF 1iirA 178 :GLPPV T0287 86 :KVY 1iirA 184 :DIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=10968 # 1j79A.80.145 read from T0287.t2k.many.frag # found chain 1j79A in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1j79A)I147 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1j79A)I147 T0287 82 :DKFKKVY 1j79A 148 :DIFDREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10969 # 1rcwA.80.192 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 80 :GVDKFKKVY 1rcwA 193 :LKDDADKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=10970 # 2cc3A.80.25 read from T0287.t2k.many.frag # found chain 2cc3A in template set T0287 80 :GVDKFKKVY 2cc3A 113 :DADTAQYAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=10971 # 2bz1A.80.96 read from T0287.t2k.many.frag # found chain 2bz1A in template set Warning: unaligning (T0287)G80 (2bz1A)G97 because S (epsilon) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 2bz1A 98 :LLNKIRAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=10972 # 1gvdA.80.21 read from T0287.t2k.many.frag # found chain 1gvdA in training set Warning: unaligning (T0287)G80 (1gvdA)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1gvdA 112 :PKRWSVIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=10973 # 1k8kG.81.87 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 81 :VDKFKKVYR 1k8kG 88 :ANDIEKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10974 # 1bc5A.81.47 read from T0287.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)K83 (1bc5A)D65 because E (beta_S) conformation "forbidden" or filtered. T0287 81 :VD 1bc5A 63 :LD T0287 84 :FKKVYR 1bc5A 66 :FGRYLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=10976 # 1h6gA.81.158 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 81 :VDKFKKVYR 1h6gA 535 :VDGLDRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=10977 # 1sedA.81.66 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 81 :VDKFKKVYR 1sedA 65 :FVTFDKLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=10978 # 1hw1A.81.204 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 81 :VDKFKKVYR 1hw1A 205 :HDQVYETVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10979 # 2f6kA.81.133 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 81 :VDKFKKVYR 2f6kA 134 :SPVLERVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10980 # 1ib2A.81.155 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)F84 (1ib2A)L986 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDK 1ib2A 983 :PQS T0287 85 :KKVYR 1ib2A 987 :QFIID Number of specific fragments extracted= 2 number of extra gaps= 1 total=10982 # 2aeuA.81.255 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 81 :VDKFKKVYR 2aeuA 256 :LERIRKAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10983 # 1uvjA.81.182 read from T0287.t2k.many.frag # found chain 1uvjA in template set T0287 81 :VDKFKKVYR 1uvjA 183 :QGKFDDAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=10984 # 1rwhA.81.29 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 81 :VDKFKKVYR 1rwhA 30 :DPDFAKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10985 # 1wteA.81.48 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 81 :VD 1wteA 49 :LN T0287 84 :FKKVYR 1wteA 52 :FDELVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=10987 # 1pb7A.81.187 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 81 :VDKFKKVYR 1pb7A 188 :QVELSTMYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10988 # 1ezwA.81.279 read from T0287.t2k.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1ezwA)D282 because N (gamma') conformation "forbidden" or filtered. T0287 84 :FKKVYR 1ezwA 283 :FGTAIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=10989 # 1z3xA.81.109 read from T0287.t2k.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 81 :V 1z3xA 107 :A T0287 83 :KFKKVYR 1z3xA 109 :KFEAADR Number of specific fragments extracted= 2 number of extra gaps= 1 total=10991 # 1zhxA.81.332 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 81 :VDKFKKVYR 1zhxA 329 :FNLIAKTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=10992 # 1u00A.81.189 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 81 :VDKFKKVYR 1u00A 578 :VDAIEQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10993 # 2anuA.81.78 read from T0287.t2k.many.frag # found chain 2anuA in template set T0287 81 :VDKFKKVYR 2anuA 67 :EDKFQDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=10994 # 2fbqA.81.124 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 81 :VDKFKKVYR 2fbqA 123 :QGHLRKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10995 # 1lugA.81.151 read from T0287.t2k.many.frag # found chain 1lugA in training set T0287 81 :VDKFKKVYR 1lugA 153 :KPGLQKVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=10996 # 1owlA.81.269 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 81 :VDKFKKVYR 1owlA 270 :SDEARNSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10997 # 1m2oA.81.541 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 81 :VDKFKKVYR 1m2oA 542 :TDDGADVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=10998 # 1e9rA.81.165 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 81 :VDKFKKVYR 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10999 # 2b6cA.81.121 read from T0287.t2k.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 82 :DKFKKVYR 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=11000 # 1aa7A.81.105 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 81 :VDKFKKVYR 1aa7A 106 :EITFHGAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11001 # 1jy1A.81.187 read from T0287.t2k.many.frag # found chain 1jy1A in training set T0287 81 :VDKFKKVYR 1jy1A 332 :APSLKEWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=11002 # 2bz1A.81.97 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 81 :VDKFKKVYR 2bz1A 98 :LLNKIRAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11003 # 1yw3A.81.115 read from T0287.t2k.many.frag # found chain 1yw3A in template set T0287 81 :VDKFKKVYR 1yw3A 116 :AENFQPWSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11004 # 2ae5B.81.320 read from T0287.t2k.many.frag # found chain 2ae5B in template set T0287 81 :VDKFKKVYR 2ae5B 321 :DPEVQAAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11005 # 1iirA.81.178 read from T0287.t2k.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :V 1iirA 179 :L T0287 83 :KFKKVYR 1iirA 181 :PVEDIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11007 # 2cc3A.81.26 read from T0287.t2k.many.frag # found chain 2cc3A in template set T0287 81 :VDKFKKVYR 2cc3A 114 :ADTAQYAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11008 # 1k8kG.82.88 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 82 :DKFKKVYRL 1k8kG 89 :NDIEKAVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11009 # 1h6gA.82.159 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 82 :DKFKKVYRL 1h6gA 536 :DGLDRTAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11010 # 1hw1A.82.205 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 82 :DKFKKVYRL 1hw1A 206 :DQVYETVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11011 # 1sedA.82.67 read from T0287.t2k.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 82 :DK 1sedA 66 :VT T0287 85 :KKVYRL 1sedA 69 :DKLLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11013 # 2f6kA.82.134 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 82 :DKFKKVYRL 2f6kA 135 :PVLERVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11014 # 1ib2A.82.156 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. T0287 82 :D 1ib2A 984 :Q T0287 84 :FKKVYRL 1ib2A 986 :LQFIIDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11016 # 1m2oA.82.542 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 82 :DKFKKVYRL 1m2oA 543 :DDGADVIRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11017 # 1pb7A.82.188 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 82 :DKFKKVYRL 1pb7A 189 :VELSTMYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11018 # 1bc5A.82.48 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 82 :DKFKKVYRL 1bc5A 64 :DDFGRYLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11019 # 1rwhA.82.30 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 82 :DKFKKVYRL 1rwhA 31 :PDFAKAITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11020 # 2aeuA.82.256 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 82 :DKFKKVYRL 2aeuA 257 :ERIRKAFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=11021 # 1ezwA.82.280 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 82 :DKFKKVYRL 1ezwA 281 :GDFGTAIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11022 # 1uvjA.82.183 read from T0287.t2k.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1uvjA 185 :KFDDAYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11023 # 1zhxA.82.333 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 82 :DKFKKVYRL 1zhxA 330 :NLIAKTKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11024 # 1z3xA.82.110 read from T0287.t2k.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1z3xA 109 :KFEAADRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11025 # 1e9rA.82.166 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 82 :DKFKKVYRL 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11026 # 2b6cA.82.122 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 82 :DKFKKVYRL 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11027 # 1u00A.82.190 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 82 :DKFKKVYRL 1u00A 579 :DAIEQAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11028 # 1lugA.82.152 read from T0287.t2k.many.frag # found chain 1lugA in training set T0287 82 :DKFKKVYRL 1lugA 154 :PGLQKVVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11029 # 2bz1A.82.98 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 82 :DKFKKVYRL 2bz1A 99 :LNKIRAYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11030 # 1sz9A.82.87 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 82 :DKFKKVYRL 1sz9A 88 :NLYKRTYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11031 # 1aa7A.82.106 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 82 :DKFKKVYRL 1aa7A 107 :ITFHGAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11032 # 1wteA.82.49 read from T0287.t2k.many.frag # found chain 1wteA in template set T0287 82 :DKFKKVYRL 1wteA 50 :NDFDELVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11033 # 1owlA.82.270 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 82 :DKFKKVYRL 1owlA 271 :DEARNSIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11034 # 2ae5B.82.321 read from T0287.t2k.many.frag # found chain 2ae5B in template set T0287 82 :DKFKKVYRL 2ae5B 322 :PEVQAAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11035 # 1vykA.82.127 read from T0287.t2k.many.frag # found chain 1vykA in template set T0287 82 :DKFKKVYRL 1vykA 128 :TEAEKYYGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11036 # 1j93A.82.167 read from T0287.t2k.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)F84 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 82 :DK 1j93A 167 :KN T0287 85 :KKVYRL 1j93A 170 :TKIKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11038 # 1xkpA.82.118 read from T0287.t2k.many.frag # found chain 1xkpA in training set Warning: unaligning (T0287)F84 (1xkpA)L152 because G (3-10) conformation "forbidden" or filtered. T0287 82 :DK 1xkpA 150 :PE T0287 85 :KKVYRL 1xkpA 153 :AHLSHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11040 # 1qs1A.82.304 read from T0287.t2k.many.frag # found chain 1qs1A in training set T0287 82 :DKFKKVYRL 1qs1A 305 :QDYKEINNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11041 # 1ae9A.82.6 read from T0287.t2k.many.frag # found chain 1ae9A in template set T0287 82 :DKFKKVYRL 1ae9A 183 :DEYLKIYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11042 # 1k8kG.83.89 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 83 :KFKKVYRLL 1k8kG 90 :DIEKAVQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11043 # 1hw1A.83.206 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 83 :KFKKVYRLL 1hw1A 207 :QVYETVRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11044 # 1m2oA.83.543 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 83 :KFKKVYRLL 1m2oA 544 :DGADVIRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11045 # 1h6gA.83.160 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 83 :KFKKVYRLL 1h6gA 537 :GLDRTAGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11046 # 2f6kA.83.135 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 83 :KFKKVYRLL 2f6kA 136 :VLERVYQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11047 # 1sedA.83.68 read from T0287.t2k.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)K83 (1sedA)T67 because E (beta_S) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1sedA 68 :FDKLLALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11048 # 1pb7A.83.189 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 83 :KFKKVYRLL 1pb7A 190 :ELSTMYRHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11049 # 1sz9A.83.88 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 83 :KFKKVYRLL 1sz9A 89 :LYKRTYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11050 # 1rwhA.83.31 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 83 :KFKKVYRLL 1rwhA 32 :DFAKAITAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11051 # 1ib2A.83.157 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 83 :KFKKVYRLL 1ib2A 985 :SLQFIIDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11052 # 1bc5A.83.49 read from T0287.t2k.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)K83 (1bc5A)D65 because E (beta_S) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1bc5A 66 :FGRYLSML Number of specific fragments extracted= 1 number of extra gaps= 1 total=11053 # 2aeuA.83.257 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 83 :KFKKVYRLL 2aeuA 258 :RIRKAFERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11054 # 1e9rA.83.167 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 83 :KFKKVYRLL 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11055 # 1u00A.83.191 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 83 :KFKKVYRLL 1u00A 580 :AIEQAIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11056 # 1zhxA.83.334 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 83 :KFKKVYRLL 1zhxA 331 :LIAKTKTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11057 # 1vykA.83.128 read from T0287.t2k.many.frag # found chain 1vykA in template set T0287 83 :KFKKVYRLL 1vykA 129 :EAEKYYGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11058 # 1owlA.83.271 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 83 :KFKKVYRLL 1owlA 272 :EARNSIRVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11059 # 1z3xA.83.111 read from T0287.t2k.many.frag # found chain 1z3xA in template set T0287 83 :KFKKVYRLL 1z3xA 109 :KFEAADRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11060 # 1uvjA.83.184 read from T0287.t2k.many.frag # found chain 1uvjA in template set T0287 83 :KFKKVYRLL 1uvjA 185 :KFDDAYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11061 # 2bz1A.83.99 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 83 :KFKKVYRLL 2bz1A 100 :NKIRAYALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11062 # 2b6cA.83.123 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 83 :KFKKVYRLL 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11063 # 2audA.83.70 read from T0287.t2k.many.frag # found chain 2audA in template set T0287 83 :KFKKVYRLL 2audA 72 :GHEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11064 # 1k55A.83.98 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 83 :KFKKVYRLL 1k55A 119 :VFQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11065 # 1ae9A.83.7 read from T0287.t2k.many.frag # found chain 1ae9A in template set T0287 83 :KFKKVYRLL 1ae9A 184 :EYLKIYQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11066 # 1ezwA.83.281 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 83 :KFKKVYRLL 1ezwA 282 :DFGTAIGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11067 # 1zj8A.83.152 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 83 :KFKKVYRLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11068 # 1aa7A.83.107 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 83 :KFKKVYRLL 1aa7A 108 :TFHGAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11069 # 2fbqA.83.126 read from T0287.t2k.many.frag # found chain 2fbqA in template set T0287 83 :KFKKVYRLL 2fbqA 125 :HLRKYLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11070 # 1zybA.83.135 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 83 :KFKKVYRLL 1zybA 124 :IFRLNYMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11071 # 1j93A.83.168 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 83 :KFKKVYRLL 1j93A 168 :NFTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11072 # 1m2oA.84.544 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 84 :FKKVYRLLE 1m2oA 545 :GADVIRWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11073 # 1k8kG.84.90 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)E92 (1k8kG)D99 because P (beta_P) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1k8kG 91 :IEKAVQSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11074 # 1hw1A.84.207 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 84 :FKKVYRLLE 1hw1A 208 :VYETVRRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11075 # 1h6gA.84.161 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 84 :FKKVYRLLE 1h6gA 538 :LDRTAGAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11076 # 2f6kA.84.136 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 84 :FKKVYRLLE 2f6kA 137 :LERVYQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11077 # 1pb7A.84.190 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 84 :FKKVYRLLE 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=11078 # 1sz9A.84.89 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 84 :FKKVYRLLE 1sz9A 90 :YKRTYLLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11079 # 2audA.84.71 read from T0287.t2k.many.frag # found chain 2audA in template set T0287 84 :FKKVYRLLE 2audA 73 :HEARYKLFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11080 # 1rwhA.84.32 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 84 :FKKVYRLLE 1rwhA 33 :FAKAITALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11081 # 1sedA.84.69 read from T0287.t2k.many.frag # found chain 1sedA in template set T0287 84 :FKKVYRLLE 1sedA 68 :FDKLLALFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11082 # 1e9rA.84.168 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 84 :FKKVYRLLE 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11083 # 1ib2A.84.158 read from T0287.t2k.many.frag # found chain 1ib2A in template set T0287 84 :FKKVYRLLE 1ib2A 986 :LQFIIDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11084 # 1k55A.84.99 read from T0287.t2k.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1k55A 120 :FQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11085 # 1qmgA.84.297 read from T0287.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1qmgA 369 :MLALYNSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11086 # 1u00A.84.192 read from T0287.t2k.many.frag # found chain 1u00A in template set T0287 84 :FKKVYRLLE 1u00A 581 :IEQAIKNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11087 # 1bc5A.84.50 read from T0287.t2k.many.frag # found chain 1bc5A in template set T0287 84 :FKKVYRLLE 1bc5A 66 :FGRYLSMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11088 # 2bz1A.84.100 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 84 :FKKVYRLLE 2bz1A 101 :KIRAYALQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11089 # 1ezwA.84.282 read from T0287.t2k.many.frag # found chain 1ezwA in training set T0287 84 :FKKVYRLLE 1ezwA 283 :FGTAIGLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11090 # 1bf5A.84.49 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 84 :FKKVYRLLE 1bf5A 199 :LKKMYLMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11091 # 1zhxA.84.335 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 84 :FKKVYRLLE 1zhxA 332 :IAKTKTELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11092 # 1zj8A.84.153 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 84 :FKKVYRLLE 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11093 # 2fkcA.84.145 read from T0287.t2k.many.frag # found chain 2fkcA in template set T0287 84 :FKKVYRLLE 2fkcA 146 :QNIVLNWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11094 # 1owlA.84.272 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 84 :FKKVYRLLE 1owlA 273 :ARNSIRVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11095 # 2aeuA.84.258 read from T0287.t2k.many.frag # found chain 2aeuA in template set T0287 84 :FKKVYRLLE 2aeuA 259 :IRKAFERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11096 # 1j93A.84.169 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 84 :FKKVYRLLE 1j93A 169 :FTKIKRLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11097 # 1jx4A.84.209 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1jx4A 210 :FDKLKGMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11098 # 1aa7A.84.108 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 84 :FKKVYRLLE 1aa7A 109 :FHGAKEISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11099 # 1vykA.84.129 read from T0287.t2k.many.frag # found chain 1vykA in template set T0287 84 :FKKVYRLLE 1vykA 130 :AEKYYGQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11100 # 1ae9A.84.8 read from T0287.t2k.many.frag # found chain 1ae9A in template set T0287 84 :FKKVYRLLE 1ae9A 185 :YLKIYQAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11101 # 2b6cA.84.124 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 84 :FKKVYRLLE 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11102 # 1m2oA.85.545 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 85 :KKVYRLLES 1m2oA 546 :ADVIRWLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11103 # 1hw1A.85.208 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 85 :KKVYRLLES 1hw1A 209 :YETVRRYGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11104 # 1h6gA.85.162 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 85 :KKVYRLLES 1h6gA 539 :DRTAGAIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11105 # 1k8kG.85.91 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 85 :KKVYRLLES 1k8kG 92 :EKAVQSLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11106 # 1sz9A.85.90 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 85 :KKVYRLLES 1sz9A 91 :KRTYLLVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11107 # 2audA.85.72 read from T0287.t2k.many.frag # found chain 2audA in template set T0287 85 :KKVYRLLES 2audA 74 :EARYKLFNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11108 # 1pb7A.85.191 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 85 :KKVYRLLES 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11109 # 2f6kA.85.137 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 85 :KKVYRLLES 2f6kA 138 :ERVYQELDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11110 # 1bf5A.85.50 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 85 :KKVYRLLES 1bf5A 200 :KKMYLMLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11111 # 1qmgA.85.298 read from T0287.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1qmgA 370 :LALYNSL T0287 93 :S 1qmgA 378 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=11113 # 1e9rA.85.169 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 85 :KKVYRLLES 1e9rA 240 :RELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11114 # 1jx4A.85.210 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1jx4A 211 :DKLKGMI T0287 93 :S 1jx4A 219 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=11116 # 1rwhA.85.33 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 85 :KKVYRLLES 1rwhA 34 :AKAITALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11117 # 2fkcA.85.146 read from T0287.t2k.many.frag # found chain 2fkcA in template set T0287 85 :KKVYRLLES 2fkcA 147 :NIVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11118 # 2bz1A.85.101 read from T0287.t2k.many.frag # found chain 2bz1A in template set T0287 85 :KKVYRLLES 2bz1A 102 :IRAYALQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11119 # 1zhxA.85.336 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 85 :KKVYRLLES 1zhxA 333 :AKTKTELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11120 # 2ccyA.85.82 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 85 :KKVYR 2ccyA 83 :LEGWK T0287 92 :ES 2ccyA 90 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11122 # 1vraB.85.64 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 85 :KKVYRLLES 1vraB 261 :ANFYKALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11123 # 1zybA.85.137 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 85 :KKVYRLLES 1zybA 126 :RLNYMNIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11124 # 1zj8A.85.154 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 85 :KKVYRLLES 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11125 # 1k55A.85.100 read from T0287.t2k.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1k55A 121 :QQIAREV T0287 93 :S 1k55A 129 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=11127 # 1usyA.85.147 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 85 :KKVYRLLES 1usyA 148 :EKVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11128 # 1owlA.85.273 read from T0287.t2k.many.frag # found chain 1owlA in training set T0287 85 :KKVYRLLES 1owlA 274 :RNSIRVWQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11129 # 1w2xA.85.693 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 85 :KKVYRLLES 1w2xA 2169 :RQVATWIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11130 # 2erbA.85.73 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 85 :KKVYRLLES 2erbA 74 :EKLHDSLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11131 # 1jt6A.85.112 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 85 :KKVYRLLES 1jt6A 113 :NEKMNKLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11132 # 1j93A.85.170 read from T0287.t2k.many.frag # found chain 1j93A in template set T0287 85 :KKVYRLLES 1j93A 170 :TKIKRLAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11133 # 2b6cA.85.125 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 85 :KKVYRLLES 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11134 # 1x6iA.85.43 read from T0287.t2k.many.frag # found chain 1x6iA in training set Warning: unaligning (T0287)S93 (1x6iA)C49 because P (beta_P) conformation "forbidden" or filtered. T0287 85 :KKVYRLLE 1x6iA 41 :RIFIRLLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11135 # 1aa7A.85.109 read from T0287.t2k.many.frag # found chain 1aa7A in template set T0287 85 :KKVYRLLES 1aa7A 110 :HGAKEISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11136 # 1m2oA.86.546 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 86 :KVYRLLESE 1m2oA 547 :DVIRWLDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11137 # 1hw1A.86.209 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 86 :KVYRLLESE 1hw1A 210 :ETVRRYGHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11138 # 1h6gA.86.163 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 86 :KVYRLLESE 1h6gA 540 :RTAGAIRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11139 # 1k8kG.86.92 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 86 :KVYRLLESE 1k8kG 93 :KAVQSLDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11140 # 1jx4A.86.211 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1jx4A 212 :KLKGMI T0287 93 :SE 1jx4A 219 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11142 # 1qmgA.86.299 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 86 :KVYRLLESE 1qmgA 371 :ALYNSLSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11143 # 2fkcA.86.147 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 T0287 86 :KVYRLLES 2fkcA 148 :IVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=11144 # 1sz9A.86.91 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 86 :KVYRLLESE 1sz9A 92 :RTYLLVDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11145 # 1bf5A.86.51 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 86 :KVYRLLESE 1bf5A 201 :KMYLMLDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11146 # 1e9rA.86.170 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1e9rA 241 :ELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11147 # 1rwhA.86.34 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 86 :KVYRLLESE 1rwhA 35 :KAITALNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11148 # 1pb7A.86.192 read from T0287.t2k.many.frag # found chain 1pb7A in training set T0287 86 :KVYRLLESE 1pb7A 193 :TMYRHMEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11149 # 2audA.86.73 read from T0287.t2k.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLL 2audA 75 :ARYKLF T0287 93 :SE 2audA 82 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11151 # 1vls.86.101 read from T0287.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1vls 136 :ELIQFLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11152 # 2ccyA.86.83 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 86 :KVYR 2ccyA 84 :EGWK T0287 92 :ESE 2ccyA 90 :ATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11154 # 1w96A.86.529 read from T0287.t2k.many.frag # found chain 1w96A in training set T0287 86 :KVYRLLESE 1w96A 542 :YLIKLLETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11155 # 1k55A.86.101 read from T0287.t2k.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1k55A 122 :QIAREV T0287 93 :SE 1k55A 129 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11157 # 1w2xA.86.694 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 86 :KVYRLLESE 1w2xA 2170 :QVATWIEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11158 # 2erbA.86.74 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 86 :KVYRLLESE 2erbA 75 :KLHDSLPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11159 # 2f6kA.86.138 read from T0287.t2k.many.frag # found chain 2f6kA in template set T0287 86 :KVYRLLESE 2f6kA 139 :RVYQELDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11160 # 1zj8A.86.155 read from T0287.t2k.many.frag # found chain 1zj8A in template set T0287 86 :KVYRLLESE 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11161 # 1z72A.86.85 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 86 :KVYRLLESE 1z72A 83 :KQLGFLEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11162 # 1jt6A.86.113 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 86 :KVYRLLESE 1jt6A 114 :EKMNKLENK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11163 # 1vraB.86.65 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 86 :KVYRLLESE 1vraB 262 :NFYKALQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11164 # 1zybA.86.138 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 86 :KVYRLLESE 1zybA 127 :LNYMNIVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11165 # 1k5nA.86.154 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 86 :KVYRLLESE 1k5nA 155 :QLRAYLEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11166 # 1sauA.86.88 read from T0287.t2k.many.frag # found chain 1sauA in training set Warning: unaligning (T0287)E94 (1sauA)G97 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1sauA 89 :YIYKLFPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=11167 # 1zhxA.86.337 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 86 :KVYRLLESE 1zhxA 334 :KTKTELEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=11168 # 1usyA.86.148 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 86 :KVYRLLESE 1usyA 149 :KVLNLIDTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11169 # 1ib2A.86.160 read from T0287.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)S93 (1ib2A)G995 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLLE 1ib2A 988 :FIIDAFK T0287 94 :E 1ib2A 996 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=11171 # 1m2oA.87.547 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 87 :VYRLLESET 1m2oA 548 :VIRWLDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11172 # 1hw1A.87.210 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 87 :VYRLLESET 1hw1A 211 :TVRRYGHES Number of specific fragments extracted= 1 number of extra gaps= 0 total=11173 # 1jx4A.87.212 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRLL 1jx4A 213 :LKGMI T0287 93 :SET 1jx4A 219 :EAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11175 # 2fkcA.87.148 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 87 :VYRLLES 2fkcA 149 :VLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=11176 # 1vls.87.102 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 87 :VYRLLESET 1vls 137 :LIQFLDNGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11177 # 1sz9A.87.92 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 87 :VYRLLESET 1sz9A 93 :TYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11178 # 1qmgA.87.300 read from T0287.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLL 1qmgA 372 :LYNSL T0287 93 :SET 1qmgA 378 :EEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11180 # 1h6gA.87.164 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 87 :VYRLLESET 1h6gA 541 :TAGAIRGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11181 # 1bf5A.87.52 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 87 :VYRLLESET 1bf5A 202 :MYLMLDNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11182 # 1e9rA.87.171 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1e9rA 242 :LFHWTTI T0287 95 :T 1e9rA 250 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=11184 # 1k5nA.87.155 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 87 :VYRLLESET 1k5nA 156 :LRAYLEGEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11185 # 1z72A.87.86 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 87 :VYRLLESET 1z72A 84 :QLGFLEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11186 # 1k8kG.87.93 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 87 :VYRLLESET 1k8kG 94 :AVQSLDKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11187 # 1w96A.87.530 read from T0287.t2k.many.frag # found chain 1w96A in training set T0287 87 :VYRLLESET 1w96A 543 :LIKLLETED Number of specific fragments extracted= 1 number of extra gaps= 0 total=11188 # 1dk8A.87.82 read from T0287.t2k.many.frag # found chain 1dk8A in training set Warning: unaligning (T0287)E92 (1dk8A)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLL 1dk8A 193 :VSRQT T0287 93 :SET 1dk8A 199 :PAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11190 # 1rwhA.87.35 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 87 :VYRLLESET 1rwhA 36 :AITALNNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11191 # 2ccyA.87.84 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 87 :VYR 2ccyA 85 :GWK T0287 92 :ESET 2ccyA 90 :ATES Number of specific fragments extracted= 2 number of extra gaps= 1 total=11193 # 1usyA.87.149 read from T0287.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1usyA 150 :VLNLIDT T0287 95 :T 1usyA 158 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=11195 # 2audA.87.74 read from T0287.t2k.many.frag # found chain 2audA in template set T0287 87 :VYRLLESET 2audA 76 :RYKLFNSPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11196 # 1jt6A.87.114 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 87 :VYRLLESET 1jt6A 115 :KMNKLENKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11197 # 1wwjA.87.64 read from T0287.t2k.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLL 1wwjA 65 :LAKIL T0287 93 :SET 1wwjA 71 :PPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11199 # 1k55A.87.102 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 87 :VYRLLESET 1k55A 123 :IAREVGEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11200 # 1x6iA.87.45 read from T0287.t2k.many.frag # found chain 1x6iA in training set T0287 87 :VYRLLESET 1x6iA 43 :FIRLLECDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11201 # 1w2xA.87.695 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 87 :VYRLLESET 1w2xA 2171 :VATWIEENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11202 # 2erbA.87.75 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 87 :VYRLLESET 2erbA 76 :LHDSLPSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11203 # 1q92A.87.48 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 87 :VY 1q92A 80 :QY T0287 91 :LESET 1q92A 84 :LRPGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11205 # 1zybA.87.139 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 87 :VYRLLESET 1zybA 128 :NYMNIVSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11206 # 1vraB.87.66 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 87 :VYRLLESET 1vraB 263 :FYKALQLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11207 # 1o82A.87.30 read from T0287.t2k.many.frag # found chain 1o82A in training set T0287 87 :VYRLLESET 1o82A 31 :ILTAVGSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11208 # 1v9mA.87.71 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 87 :VYRLL 1v9mA 72 :LPRLV T0287 93 :SET 1v9mA 78 :GEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11210 # 1hw1A.88.211 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 88 :YRLLESETM 1hw1A 212 :VRRYGHESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11211 # 1m2oA.88.548 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 88 :YRLLESETM 1m2oA 549 :IRWLDRTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11212 # 1jx4A.88.213 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1jx4A 214 :KGMI T0287 93 :SETM 1jx4A 219 :EAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11214 # 2fkcA.88.149 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 88 :YRLLES 2fkcA 150 :LNWLEK T0287 96 :M 2fkcA 158 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11216 # 1k5nA.88.156 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 88 :YRLLESETM 1k5nA 157 :RAYLEGECV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11217 # 1h6gA.88.165 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 88 :YRLLESETM 1h6gA 542 :AGAIRGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11218 # 1vls.88.103 read from T0287.t2k.many.frag # found chain 1vls in template set T0287 88 :YRLLESETM 1vls 138 :IQFLDNGNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11219 # 1wwjA.88.65 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 88 :YRLLESETM 1wwjA 66 :AKILPPPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11220 # 1bf5A.88.53 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 88 :YRLLESETM 1bf5A 203 :YLMLDNKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11221 # 1sz9A.88.93 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1sz9A 94 :YLLV T0287 93 :SETM 1sz9A 99 :NTTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11223 # 1qmgA.88.301 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 88 :YRLLESETM 1qmgA 373 :YNSLSEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11224 # 1dk8A.88.83 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 88 :YRLLESETM 1dk8A 194 :SRQTKPATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11225 # 1z72A.88.87 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 88 :YRLLESETM 1z72A 85 :LGFLEADED Number of specific fragments extracted= 1 number of extra gaps= 0 total=11226 # 2ccyA.88.85 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 88 :YR 2ccyA 86 :WK T0287 92 :ESETM 2ccyA 90 :ATEST Number of specific fragments extracted= 2 number of extra gaps= 1 total=11228 # 1usyA.88.150 read from T0287.t2k.many.frag # found chain 1usyA in template set T0287 88 :YRLLESETM 1usyA 151 :LNLIDTKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11229 # 1e9rA.88.172 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLLES 1e9rA 243 :FHWTTI T0287 95 :TM 1e9rA 250 :TF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11231 # 1rwhA.88.36 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 88 :YRLLESETM 1rwhA 37 :ITALNNKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11232 # 1jt6A.88.115 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 88 :YRLLESETM 1jt6A 116 :MNKLENKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11233 # 1zybA.88.140 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 88 :YRLLESETM 1zybA 129 :YMNIVSNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11234 # 1w96A.88.531 read from T0287.t2k.many.frag # found chain 1w96A in training set T0287 88 :YRLLESETM 1w96A 544 :IKLLETEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11235 # 1v9mA.88.72 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1v9mA 73 :PRLV T0287 94 :ETM 1v9mA 79 :EAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11237 # 1q92A.88.49 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 88 :Y 1q92A 81 :Y T0287 91 :LESETM 1q92A 84 :LRPGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11239 # 1vraB.88.67 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 88 :YRLLESETM 1vraB 264 :YKALQLACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11240 # 1w2xA.88.696 read from T0287.t2k.many.frag # found chain 1w2xA in template set T0287 88 :YRLLESETM 1w2xA 2172 :ATWIEENYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11241 # 2erbA.88.76 read from T0287.t2k.many.frag # found chain 2erbA in template set T0287 88 :YRLLESETM 2erbA 77 :HDSLPSSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11242 # 1k8kG.88.94 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)E92 (1k8kG)D99 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1k8kG 95 :VQSL T0287 93 :SETM 1k8kG 100 :KNGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11244 # 1k55A.88.103 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 88 :YRLLESETM 1k55A 124 :AREVGEVRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11245 # 1m0kA.88.183 read from T0287.t2k.many.frag # found chain 1m0kA in training set T0287 88 :YRLLESETM 1m0kA 171 :FKVLRNVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11246 # 1o82A.88.31 read from T0287.t2k.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1o82A 32 :LTAV T0287 93 :SETM 1o82A 37 :SGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11248 # 1c9kA.88.107 read from T0287.t2k.many.frag # found chain 1c9kA in template set T0287 88 :YRLLESETM 1c9kA 108 :ERAIDDEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11249 # 1hw1A.89.212 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 89 :RLLESETME 1hw1A 213 :RRYGHESGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11250 # 1m2oA.89.549 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 89 :RLLESETME 1m2oA 550 :RWLDRTLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11251 # 1jx4A.89.214 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 89 :RLLESETME 1jx4A 215 :GMIGEAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11252 # 1k5nA.89.157 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 89 :RLLESETME 1k5nA 158 :AYLEGECVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11253 # 2fkcA.89.150 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 89 :RLLES 2fkcA 151 :NWLEK T0287 96 :ME 2fkcA 158 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11255 # 1wwjA.89.66 read from T0287.t2k.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1wwjA 67 :KIL T0287 93 :SETME 1wwjA 71 :PPVRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11257 # 1dk8A.89.84 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 89 :RLLESETME 1dk8A 195 :RQTKPATKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11258 # 1sz9A.89.94 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1sz9A 95 :LLV T0287 93 :SETME 1sz9A 99 :NTTRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11260 # 1h6gA.89.166 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 89 :RLLESETME 1h6gA 543 :GAIRGRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11261 # 1qmgA.89.302 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 89 :RLLESETME 1qmgA 374 :NSLSEEGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11262 # 1z72A.89.88 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 89 :RLLESETME 1z72A 86 :GFLEADEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11263 # 2ccyA.89.86 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 89 :R 2ccyA 87 :K T0287 92 :ESETME 2ccyA 90 :ATESTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11265 # 1bf5A.89.54 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 89 :RLLESETME 1bf5A 204 :LMLDNKRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11266 # 1jt6A.89.116 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 89 :RLLESETME 1jt6A 117 :NKLENKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=11267 # 1v9mA.89.73 read from T0287.t2k.many.frag # found chain 1v9mA in template set T0287 89 :RLLESETME 1v9mA 74 :RLVTGEARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11268 # 1vls.89.104 read from T0287.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 89 :RLLES 1vls 139 :QFLDN T0287 95 :TME 1vls 145 :NMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11270 # 1zybA.89.141 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 89 :RLLESETME 1zybA 130 :MNIVSNRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11271 # 1q92A.89.50 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 91 :LESETME 1q92A 84 :LRPGLSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11272 # 1usyA.89.151 read from T0287.t2k.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 89 :RLLES 1usyA 152 :NLIDT T0287 95 :TME 1usyA 158 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11274 # 1e9rA.89.173 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLLES 1e9rA 244 :HWTTI T0287 95 :TME 1e9rA 250 :TFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11276 # 1uruA.89.99 read from T0287.t2k.many.frag # found chain 1uruA in template set T0287 89 :RLLESETME 1uruA 100 :GASESLWAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11277 # 1k55A.89.104 read from T0287.t2k.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1k55A 125 :REV T0287 93 :SETME 1k55A 129 :EVRMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=11279 # 1vraB.89.68 read from T0287.t2k.many.frag # found chain 1vraB in template set T0287 89 :RLLESETME 1vraB 265 :KALQLACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=11280 # 1o82A.89.32 read from T0287.t2k.many.frag # found chain 1o82A in training set T0287 89 :RLLESETME 1o82A 33 :TAVGSGGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11281 # 1qwnA.89.138 read from T0287.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0287)E92 (1qwnA)G142 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1qwnA 139 :HDL T0287 93 :SETME 1qwnA 143 :ENKKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11283 # 1rwhA.89.37 read from T0287.t2k.many.frag # found chain 1rwhA in training set T0287 89 :RLLESETME 1rwhA 38 :TALNNKAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11284 # 1zs3A.89.148 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 89 :RLLESETME 1zs3A 149 :VELYGYNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11285 # 1k8kG.89.95 read from T0287.t2k.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)E92 (1k8kG)D99 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1k8kG 96 :QSL T0287 93 :SETME 1k8kG 100 :KNGVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11287 # 1zhxA.89.340 read from T0287.t2k.many.frag # found chain 1zhxA in template set T0287 89 :RLLESETME 1zhxA 337 :TELEETQRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11288 # 1qc7A.89.43 read from T0287.t2k.many.frag # found chain 1qc7A in template set T0287 89 :RLLESETME 1qc7A 278 :KNMSKRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11289 # 1hw1A.90.213 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 90 :LLESETMEL 1hw1A 214 :RYGHESGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11290 # 1k5nA.90.158 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 90 :LLESETMEL 1k5nA 159 :YLEGECVEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11291 # 1jx4A.90.215 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1jx4A 216 :MI T0287 93 :SETMEL 1jx4A 219 :EAKAKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=11293 # 1dk8A.90.85 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 90 :LLESETMEL 1dk8A 196 :QTKPATKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11294 # 1wwjA.90.67 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 90 :LLESETMEL 1wwjA 68 :ILPPPVRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11295 # 1m2oA.90.550 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 90 :LLESETMEL 1m2oA 551 :WLDRTLIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11296 # 2fkcA.90.151 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 90 :LLES 2fkcA 152 :WLEK T0287 96 :MEL 2fkcA 158 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11298 # 1sz9A.90.95 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 90 :LLESETMEL 1sz9A 96 :LVDNTTRTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11299 # 1h6gA.90.167 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 90 :LLESETMEL 1h6gA 544 :AIRGRAARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11300 # 2czrA.90.11 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 90 :LLESETMEL 2czrA 4 :ELSPGTKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11301 # 1q92A.90.51 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TMEL 1q92A 88 :LSEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=11303 # 2ccyA.90.87 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMEL 2ccyA 90 :ATESTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11304 # 1z72A.90.89 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 90 :LLESETMEL 1z72A 87 :FLEADEDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11305 # 1g61A.90.74 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 90 :LLESETMEL 1g61A 2075 :IVEDEELDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11306 # 1bf5A.90.55 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 90 :LLESETMEL 1bf5A 205 :MLDNKRKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11307 # 1qmgA.90.303 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 90 :LLESETMEL 1qmgA 375 :SLSEEGKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11308 # 1v9mA.90.74 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 90 :L 1v9mA 75 :L T0287 93 :SETMEL 1v9mA 78 :GEAREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11310 # 1zs3A.90.149 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 90 :LLESETMEL 1zs3A 150 :ELYGYNLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11311 # 1jt6A.90.117 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 90 :LLESETMEL 1jt6A 118 :KLENKYIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11312 # 1uruA.90.100 read from T0287.t2k.many.frag # found chain 1uruA in template set T0287 90 :LLESETMEL 1uruA 101 :ASESLWADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11313 # 1kaeA.90.78 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 90 :LLESETMEL 1kaeA 79 :RLSDELKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11314 # 1zybA.90.142 read from T0287.t2k.many.frag # found chain 1zybA in template set T0287 90 :LLESETMEL 1zybA 131 :NIVSNRAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11315 # 1e9rA.90.174 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LLES 1e9rA 245 :WTTI T0287 95 :TMEL 1e9rA 250 :TFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11317 # 1k8kG.90.96 read from T0287.t2k.many.frag # found chain 1k8kG in template set T0287 90 :LLESETMEL 1k8kG 97 :SLDKNGVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11318 # 1k55A.90.105 read from T0287.t2k.many.frag # found chain 1k55A in training set T0287 90 :LLESETMEL 1k55A 126 :EVGEVRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11319 # 1lc5A.90.271 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 90 :LLESETMEL 1lc5A 272 :WLREEGARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11320 # 1o82A.90.33 read from T0287.t2k.many.frag # found chain 1o82A in training set T0287 90 :LLESETMEL 1o82A 34 :AVGSGGLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11321 # 1zz1A.90.74 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 90 :LLESETMEL 1zz1A 75 :AHSAAHLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11322 # 1q6uA.90.97 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 90 :LLESETMEL 1q6uA 98 :DNEAKGKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11323 # 1fi4A.90.355 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 90 :LLESETMEL 1fi4A 336 :KFTTEQLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11324 # 1hw1A.91.214 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 91 :LESETMELL 1hw1A 215 :YGHESGEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11325 # 1k5nA.91.159 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 91 :LESETMELL 1k5nA 160 :LEGECVEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11326 # 1jx4A.91.216 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 91 :LESETMELL 1jx4A 217 :IGEAKAKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11327 # 1dk8A.91.86 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 91 :LESETMELL 1dk8A 197 :TKPATKSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11328 # 1wwjA.91.68 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 91 :LESETMELL 1wwjA 69 :LPPPVRKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=11329 # 1q92A.91.52 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TMELL 1q92A 88 :LSEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11331 # 2czrA.91.12 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 91 :LESETMELL 2czrA 5 :LSPGTKKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11332 # 2fkcA.91.152 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 91 :LES 2fkcA 153 :LEK T0287 96 :MELL 2fkcA 158 :VLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11334 # 1m2oA.91.551 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 91 :LESETMELL 1m2oA 552 :LDRTLIKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11335 # 1sz9A.91.96 read from T0287.t2k.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1sz9A 97 :V T0287 93 :SETMELL 1sz9A 99 :NTTRTKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11337 # 1h6gA.91.168 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 91 :LESETMELL 1h6gA 545 :IRGRAARVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11338 # 2ccyA.91.88 read from T0287.t2k.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMELL 2ccyA 90 :ATESTKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=11339 # 1g61A.91.75 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2076 :VEDEELDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11340 # 1zz1A.91.75 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 91 :LESETMELL 1zz1A 76 :HSAAHLENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11341 # 1z72A.91.90 read from T0287.t2k.many.frag # found chain 1z72A in template set T0287 91 :LESETMELL 1z72A 88 :LEADEDGYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11342 # 1fi4A.91.356 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 91 :LESETMELL 1fi4A 337 :FTTEQLEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11343 # 1lc5A.91.272 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 91 :LESETMELL 1lc5A 273 :LREEGARFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11344 # 1oohA.91.78 read from T0287.t2k.many.frag # found chain 1oohA in training set T0287 91 :LESETMELL 1oohA 77 :VPPEMMEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11345 # 1zs3A.91.150 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 91 :LESETMELL 1zs3A 151 :LYGYNLQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11346 # 1v9mA.91.75 read from T0287.t2k.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 94 :ETMELL 1v9mA 79 :EAREAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11347 # 1jt6A.91.118 read from T0287.t2k.many.frag # found chain 1jt6A in template set T0287 91 :LESETMELL 1jt6A 119 :LENKYIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11348 # 1kaeA.91.79 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 91 :LESETMELL 1kaeA 80 :LSDELKQAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11349 # 1l5aA.91.214 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 91 :LESETMELL 1l5aA 215 :LNSQLNHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11350 # 1qmgA.91.304 read from T0287.t2k.many.frag # found chain 1qmgA in training set T0287 91 :LESETMELL 1qmgA 376 :LSEEGKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11351 # 1uruA.91.101 read from T0287.t2k.many.frag # found chain 1uruA in template set T0287 91 :LESETMELL 1uruA 102 :SESLWADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11352 # 1ekqA.91.145 read from T0287.t2k.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELL 1ekqA 148 :GDIIRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11353 # 1fobA.91.109 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 91 :LESETMELL 1fobA 110 :LYNYTLEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11354 # 1bf5A.91.56 read from T0287.t2k.many.frag # found chain 1bf5A in template set T0287 91 :LESETMELL 1bf5A 206 :LDNKRKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11355 # 1g61A.91.166 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2167 :VEDDELEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11356 # 1za0A.91.206 read from T0287.t2k.many.frag # found chain 1za0A in template set Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)R208 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)R208 T0287 93 :SETMELL 1za0A 209 :DETIAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11357 # 1hw1A.92.215 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 92 :ESETMELLH 1hw1A 216 :GHESGEIWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11358 # 1k5nA.92.160 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 92 :ESETMELLH 1k5nA 161 :EGECVEWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11359 # 1jx4A.92.217 read from T0287.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1jx4A 219 :EAKAKYLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11360 # 1q92A.92.53 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 92 :ES 1q92A 85 :RP T0287 95 :TMELLH 1q92A 88 :LSEKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11362 # 1wwjA.92.69 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 92 :ESETMELLH 1wwjA 70 :PPPVRKIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11363 # 1dk8A.92.87 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 92 :ESETMELLH 1dk8A 198 :KPATKSFIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11364 # 2czrA.92.13 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 92 :ESETMELLH 2czrA 6 :SPGTKKVYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11365 # 2fkcA.92.153 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 92 :ES 2fkcA 154 :EK T0287 96 :MELLH 2fkcA 158 :VLVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11367 # 1zz1A.92.76 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 92 :ESETMELLH 1zz1A 77 :SAAHLENMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11368 # 1h6gA.92.169 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)H100 (1h6gA)H554 because H (helix) conformation "forbidden" or filtered. T0287 92 :ESETMELL 1h6gA 546 :RGRAARVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11369 # 1m2oA.92.552 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 92 :ESETMELLH 1m2oA 553 :DRTLIKLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11370 # 2ccyA.92.89 read from T0287.t2k.many.frag # found chain 2ccyA in training set T0287 92 :ESETMELLH 2ccyA 90 :ATESTKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11371 # 1fi4A.92.357 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 92 :ESETMELLH 1fi4A 338 :TTEQLEAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11372 # 1g61A.92.76 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 92 :ESETMELLH 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11373 # 1y1pA.92.107 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 92 :ESETMELLH 1y1pA 109 :IGGTLNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11374 # 1sz9A.92.97 read from T0287.t2k.many.frag # found chain 1sz9A in template set T0287 92 :ESETMELLH 1sz9A 98 :DNTTRTKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11375 # 1zs3A.92.151 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 92 :ESETMELLH 1zs3A 152 :YGYNLQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11376 # 1lc5A.92.273 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 92 :ESETMELLH 1lc5A 274 :REEGARFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11377 # 1uhvA.92.31 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 92 :ESETMELLH 1uhvA 32 :QKEYIETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11378 # 1l5aA.92.215 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 92 :ESETMELLH 1l5aA 216 :NSQLNHLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11379 # 1a4iA.92.77 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 92 :ESETMELLH 1a4iA 78 :ESEVMKYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11380 # 1fobA.92.110 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 92 :ESETMELLH 1fobA 111 :YNYTLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11381 # 1e9rA.92.176 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 92 :ESETMELLH 1e9rA 247 :TIATFDDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11382 # 1ekqA.92.146 read from T0287.t2k.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELLH 1ekqA 148 :GDIIRLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11383 # 1oohA.92.79 read from T0287.t2k.many.frag # found chain 1oohA in training set T0287 92 :ESETMELLH 1oohA 78 :PPEMMEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11384 # 1q6uA.92.99 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 92 :ESETMELLH 1q6uA 100 :EAKGKEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11385 # 3nul.92.41 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 92 :ESETMELLH 3nul 43 :KPQEIDGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11386 # 1qtwA.92.44 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 92 :ESETMELLH 1qtwA 45 :TTQTIDEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11387 # 1jftA.92.27 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 92 :ESETMELLH 1jftA 29 :AEETRNAVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11388 # 1gsoA.92.305 read from T0287.t2k.many.frag # found chain 1gsoA in training set T0287 92 :ESETMELLH 1gsoA 304 :KSDLVELCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11389 # 1hw1A.93.216 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. T0287 93 :SETMELL 1hw1A 217 :HESGEIW T0287 101 :A 1hw1A 225 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=11391 # 1k5nA.93.161 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 93 :SETMELLHA 1k5nA 162 :GECVEWLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11392 # 1jx4A.93.218 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 93 :SETMELLHA 1jx4A 219 :EAKAKYLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11393 # 1q92A.93.54 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 93 :S 1q92A 86 :P T0287 95 :TMELLHA 1q92A 88 :LSEKAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11395 # 2fkcA.93.154 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 93 :S 2fkcA 155 :K T0287 96 :MELLHA 2fkcA 158 :VLVLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11397 # 2czrA.93.14 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 93 :SETMELLHA 2czrA 7 :PGTKKVYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11398 # 1y1pA.93.108 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 93 :SETMELLHA 1y1pA 110 :GGTLNALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11399 # 1e9rA.93.177 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :S 1e9rA 248 :I T0287 95 :TMELLHA 1e9rA 250 :TFDDLRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11401 # 1fi4A.93.358 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 93 :SETMELLHA 1fi4A 339 :TEQLEAFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11402 # 1zz1A.93.77 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 93 :SETMELLHA 1zz1A 78 :AAHLENMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11403 # 1h6gA.93.170 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 93 :SETMELLHA 1h6gA 547 :GRAARVIHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11404 # 1wwjA.93.70 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 93 :SETMELLHA 1wwjA 71 :PPVRKIIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11405 # 1dk8A.93.88 read from T0287.t2k.many.frag # found chain 1dk8A in training set T0287 93 :SETMELLHA 1dk8A 199 :PATKSFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11406 # 2ccyA.93.90 read from T0287.t2k.many.frag # found chain 2ccyA in training set T0287 93 :SETMELLHA 2ccyA 91 :TESTKLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11407 # 1lc5A.93.274 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 93 :SETMELLHA 1lc5A 275 :EEGARFYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11408 # 1m2oA.93.553 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 93 :SETMELLHA 1m2oA 554 :RTLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11409 # 1zs3A.93.152 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 93 :SETMELLHA 1zs3A 153 :GYNLQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11410 # 1g61A.93.77 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 93 :SETMELLHA 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11411 # 1uhvA.93.32 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 93 :SETMELLHA 1uhvA 33 :KEYIETLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11412 # 1g8mA.93.126 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 93 :SETMELLHA 1g8mA 127 :IGGVALLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11413 # 1uq5A.93.204 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 93 :SETMELLHA 1uq5A 209 :NSWGRLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11414 # 1qtwA.93.45 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 93 :SETMELLHA 1qtwA 46 :TQTIDEFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11415 # 1a4iA.93.78 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 93 :SETMELLHA 1a4iA 79 :SEVMKYITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11416 # 1jftA.93.28 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 93 :SETMELLHA 1jftA 30 :EETRNAVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11417 # 1l5aA.93.216 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 93 :SETMELLHA 1l5aA 217 :SQLNHLLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11418 # 1fobA.93.111 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 93 :SETMELLHA 1fobA 112 :NYTLEVCNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11419 # 1q6uA.93.100 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 93 :SETMELLHA 1q6uA 101 :AKGKEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11420 # 1oohA.93.80 read from T0287.t2k.many.frag # found chain 1oohA in training set T0287 93 :SETMELLHA 1oohA 79 :PEMMEMSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11421 # 1wgzA.93.189 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 93 :SETMELLHA 1wgzA 190 :EGLKGLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11422 # 1lycA.93.95 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 93 :SETMELLHA 1lycA 96 :TDTVEALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11423 # 1hw1A.94.217 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 94 :ETMELLHAI 1hw1A 218 :ESGEIWHRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11424 # 1k5nA.94.162 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 94 :ETMELLHAI 1k5nA 163 :ECVEWLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11425 # 1q92A.94.55 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 95 :TMELLHAI 1q92A 88 :LSEKAISI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11426 # 1y1pA.94.109 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 94 :ETMELLHAI 1y1pA 111 :GTLNALRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11427 # 1jx4A.94.219 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 94 :ETMELLHAI 1jx4A 220 :AKAKYLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11428 # 1zz1A.94.78 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 94 :ETMELLHAI 1zz1A 79 :AHLENMKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11429 # 2fkcA.94.155 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAI 2fkcA 158 :VLVLTDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11430 # 2czrA.94.15 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 94 :ETMELLHAI 2czrA 8 :GTKKVYTQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11431 # 1uhvA.94.33 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 94 :ETMELLHAI 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11432 # 1h6gA.94.171 read from T0287.t2k.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)H100 (1h6gA)H554 because H (helix) conformation "forbidden" or filtered. T0287 94 :ETMELL 1h6gA 548 :RAARVI T0287 101 :AI 1h6gA 555 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11434 # 1fi4A.94.359 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 94 :ETMELLHAI 1fi4A 340 :EQLEAFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11435 # 1g8mA.94.127 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 94 :ETMELLHAI 1g8mA 128 :GGVALLRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11436 # 1e9rA.94.178 read from T0287.t2k.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 95 :TMELLHAI 1e9rA 250 :TFDDLRGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11437 # 1zs3A.94.153 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 94 :ETMELLHAI 1zs3A 154 :YNLQVIRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11438 # 1lc5A.94.275 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 94 :ETMELLHAI 1lc5A 276 :EGARFYQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11439 # 1wwjA.94.71 read from T0287.t2k.many.frag # found chain 1wwjA in template set T0287 94 :ETMELLHAI 1wwjA 72 :PVRKIIGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11440 # 1qtwA.94.46 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 94 :ETMELLHAI 1qtwA 47 :QTIDEFKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11441 # 1uq5A.94.205 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 94 :ETMELLHAI 1uq5A 210 :SWGRLSTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11442 # 1lniA.94.13 read from T0287.t2k.many.frag # found chain 1lniA in training set T0287 94 :ETMELLHAI 1lniA 14 :EATDTLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11443 # 1lycA.94.96 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 94 :ETMELLHAI 1lycA 97 :DTVEALRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11444 # 1fobA.94.112 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 94 :ETMELLHAI 1fobA 113 :YTLEVCNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11445 # 1q6uA.94.101 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 94 :ETMELLHAI 1q6uA 102 :KGKEYREKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11446 # 1g61A.94.78 read from T0287.t2k.many.frag # found chain 1g61A in training set T0287 94 :ETMELLHAI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11447 # 1a4iA.94.79 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 94 :ETMELLHAI 1a4iA 80 :EVMKYITSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11448 # 1m2oA.94.554 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 94 :ETMELLHAI 1m2oA 555 :TLIKLCQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11449 # 1wgzA.94.190 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 94 :ETMELLHAI 1wgzA 191 :GLKGLLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11450 # 1jftA.94.29 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 94 :ETMELLHAI 1jftA 31 :ETRNAVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11451 # 1l5aA.94.217 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 94 :ETMELLHAI 1l5aA 218 :QLNHLLLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11452 # 1vpbA.94.139 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 94 :ETMELLHAI 1vpbA 128 :DKIEMAKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11453 # 2ccyA.94.91 read from T0287.t2k.many.frag # found chain 2ccyA in training set T0287 94 :ETMELLHAI 2ccyA 92 :ESTKLAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11454 # 1hw1A.95.218 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 95 :TMELLHAIA 1hw1A 219 :SGEIWHRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11455 # 1k5nA.95.163 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 95 :TMELLHAIA 1k5nA 164 :CVEWLRRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11456 # 1y1pA.95.110 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 95 :TMELLHAIA 1y1pA 112 :TLNALRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11457 # 1q92A.95.56 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 95 :TMELLHAIA 1q92A 88 :LSEKAISIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=11458 # 1g8mA.95.128 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 95 :TMELLHAIA 1g8mA 129 :GVALLRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11459 # 1uq5A.95.206 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 95 :TMELLHAIA 1uq5A 211 :WGRLSTAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11460 # 1h6gA.95.172 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 95 :TMELLHAIA 1h6gA 549 :AARVIHVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11461 # 1zs3A.95.154 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 95 :TMELLHAIA 1zs3A 155 :NLQVIRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11462 # 2fkcA.95.156 read from T0287.t2k.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 Warning: unaligning (T0287)I102 (2fkcA)I164 because G (3-10) conformation "forbidden" or filtered. T0287 96 :MELLHA 2fkcA 158 :VLVLTD T0287 103 :A 2fkcA 165 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=11464 # 1uhvA.95.34 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 95 :TMELLHAIA 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11465 # 1lc5A.95.276 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 95 :TMELLHAIA 1lc5A 277 :GARFYQALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11466 # 1zz1A.95.79 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 95 :TMELLHAIA 1zz1A 80 :HLENMKRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11467 # 1fi4A.95.360 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 95 :TMELLHAIA 1fi4A 341 :QLEAFNHQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11468 # 2czrA.95.16 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 95 :TMELLHAIA 2czrA 9 :TKKVYTQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11469 # 1lniA.95.14 read from T0287.t2k.many.frag # found chain 1lniA in training set T0287 95 :TMELLHAIA 1lniA 15 :ATDTLNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11470 # 1jx4A.95.220 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 95 :TMELLHAIA 1jx4A 221 :KAKYLISLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11471 # 1q6uA.95.102 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 95 :TMELLHAIA 1q6uA 103 :GKEYREKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11472 # 1qtwA.95.47 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 95 :TMELLHAIA 1qtwA 48 :TIDEFKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11473 # 1q79A.95.397 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 95 :TMELLHAIA 1q79A 398 :IRILVGSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11474 # 1vpbA.95.140 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 95 :TMELLHAIA 1vpbA 129 :KIEMAKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11475 # 1wgzA.95.191 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 95 :TMELLHAIA 1wgzA 192 :LKGLLDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11476 # 1lycA.95.97 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 95 :TMELLHAIA 1lycA 98 :TVEALRAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11477 # 1fobA.95.113 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 95 :TMELLHAIA 1fobA 114 :TLEVCNTFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11478 # 1wa5C.95.311 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 95 :TMELLHAIA 1wa5C 312 :SLSFLTAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11479 # 1jftA.95.30 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 95 :TMELLHAIA 1jftA 32 :TRNAVWAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11480 # 1gxqA.95.35 read from T0287.t2k.many.frag # found chain 1gxqA in template set T0287 95 :TMELLHAIA 1gxqA 159 :EFKLLHFFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11481 # 1e9rA.95.179 read from T0287.t2k.many.frag # found chain 1e9rA in template set T0287 95 :TMELLHAIA 1e9rA 250 :TFDDLRGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11482 # 3nul.95.44 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 95 :TMELLHAIA 3nul 46 :EIDGIKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11483 # 1m2oA.95.555 read from T0287.t2k.many.frag # found chain 1m2oA in template set T0287 95 :TMELLHAIA 1m2oA 556 :LIKLCQKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11484 # 1a4iA.95.80 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 95 :TMELLHAIA 1a4iA 81 :VMKYITSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11485 # 1y1pA.96.111 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 96 :MELLHAIAE 1y1pA 113 :LNALRAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11486 # 1hw1A.96.219 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 96 :MELLHAIAE 1hw1A 220 :GEIWHRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11487 # 1k5nA.96.164 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 96 :MELLHAIAE 1k5nA 165 :VEWLRRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11488 # 1q92A.96.57 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 96 :MELLHAIAE 1q92A 89 :SEKAISIWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11489 # 1g8mA.96.129 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 96 :MELLHAIAE 1g8mA 130 :VALLRAAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11490 # 1zz1A.96.80 read from T0287.t2k.many.frag # found chain 1zz1A in template set T0287 96 :MELLHAIAE 1zz1A 81 :LENMKRVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11491 # 1uhvA.96.35 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 96 :MELLHAIAE 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11492 # 1zs3A.96.155 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 96 :MELLHAIAE 1zs3A 156 :LQVIRNLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11493 # 1uq5A.96.207 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 96 :MELLHAIAE 1uq5A 212 :GRLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11494 # 1lc5A.96.277 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 96 :MELLHAIAE 1lc5A 278 :ARFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11495 # 1fi4A.96.361 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 96 :MELLHAIAE 1fi4A 342 :LEAFNHQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11496 # 1q6uA.96.103 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 96 :MELLHAIAE 1q6uA 104 :KEYREKFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11497 # 1qtwA.96.48 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 96 :MELLHAIAE 1qtwA 49 :IDEFKAACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11498 # 1wa5C.96.312 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 96 :MELLHAIAE 1wa5C 313 :LSFLTAVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11499 # 2fkcA.96.157 read from T0287.t2k.many.frag # found chain 2fkcA in template set T0287 96 :MELLHAIAE 2fkcA 158 :VLVLTDILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11500 # 3nul.96.45 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 96 :MELLHAIAE 3nul 47 :IDGIKKDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11501 # 1h6gA.96.173 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 96 :MELLHAIAE 1h6gA 550 :ARVIHVVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11502 # 1lycA.96.98 read from T0287.t2k.many.frag # found chain 1lycA in training set T0287 96 :MELLHAIAE 1lycA 99 :VEALRAVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11503 # 1q79A.96.398 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 96 :MELLHAIAE 1q79A 399 :RILVGSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11504 # 1jx4A.96.221 read from T0287.t2k.many.frag # found chain 1jx4A in training set T0287 96 :MELLHAIAE 1jx4A 222 :AKYLISLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11505 # 1vpbA.96.141 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 96 :MELLHAIAE 1vpbA 130 :IEMAKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11506 # 1lniA.96.15 read from T0287.t2k.many.frag # found chain 1lniA in training set T0287 96 :MELLHAIAE 1lniA 16 :TDTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11507 # 1jftA.96.31 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 96 :MELLHAIAE 1jftA 33 :RNAVWAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11508 # 1zl0A.96.68 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)H100 (1zl0A)H71 because H (helix) conformation "forbidden" or filtered. T0287 96 :MELL 1zl0A 67 :LEDL T0287 101 :AIAE 1zl0A 72 :NAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11510 # 1gxqA.96.36 read from T0287.t2k.many.frag # found chain 1gxqA in template set T0287 96 :MELLHAIAE 1gxqA 160 :FKLLHFFMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11511 # 2czrA.96.17 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 96 :MELLHAIAE 2czrA 10 :KKVYTQVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11512 # 1a4iA.96.81 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 96 :MELLHAIAE 1a4iA 82 :MKYITSLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11513 # 2bptA.96.681 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 96 :MELLHAIAE 2bptA 682 :MNVLAQMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11514 # 1wgzA.96.192 read from T0287.t2k.many.frag # found chain 1wgzA in template set T0287 96 :MELLHAIAE 1wgzA 193 :KGLLDRILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11515 # 1fobA.96.114 read from T0287.t2k.many.frag # found chain 1fobA in training set T0287 96 :MELLHAIAE 1fobA 115 :LEVCNTFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11516 # 1y1pA.97.112 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 97 :ELLHAIAEN 1y1pA 114 :NALRAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11517 # 1q92A.97.58 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 97 :ELLHAIAEN 1q92A 90 :EKAISIWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=11518 # 1k5nA.97.165 read from T0287.t2k.many.frag # found chain 1k5nA in training set T0287 97 :ELLHAIAEN 1k5nA 166 :EWLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11519 # 1hw1A.97.220 read from T0287.t2k.many.frag # found chain 1hw1A in training set T0287 97 :ELLHAIAEN 1hw1A 221 :EIWHRMQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11520 # 1uhvA.97.36 read from T0287.t2k.many.frag # found chain 1uhvA in template set T0287 97 :ELLHAIAEN 1uhvA 37 :ETLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11521 # 1lc5A.97.278 read from T0287.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N105 (1lc5A)L287 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1lc5A 279 :RFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=11522 # 1zz1A.97.81 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N105 (1zz1A)L90 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1zz1A 82 :ENMKRVSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11523 # 1q79A.97.399 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 97 :ELLHAIAEN 1q79A 400 :ILVGSLEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11524 # 1g8mA.97.130 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 97 :ELLHAIAEN 1g8mA 131 :ALLRAAAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11525 # 1uq5A.97.208 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 97 :ELLHAIAEN 1uq5A 213 :RLSTAIQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=11526 # 1zs3A.97.156 read from T0287.t2k.many.frag # found chain 1zs3A in template set T0287 97 :ELLHAIAEN 1zs3A 157 :QVIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11527 # 2czrA.97.18 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 97 :ELLHAIAEN 2czrA 11 :KVYTQVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11528 # 1wa5C.97.313 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 97 :ELLHAIAEN 1wa5C 314 :SFLTAVTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11529 # 1q6uA.97.104 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 97 :ELLHAIAEN 1q6uA 105 :EYREKFAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11530 # 1n5uA.97.258 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 97 :ELLHAIAEN 1n5uA 259 :DLAKYICEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11531 # 1lniA.97.16 read from T0287.t2k.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)N105 (1lniA)D25 because L (left) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1lniA 17 :DTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=11532 # 3nul.97.46 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 97 :ELLHAIAEN 3nul 48 :DGIKKDFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11533 # 1zl0A.97.69 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1zl0A 68 :EDLHNAFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11534 # 1h6gA.97.174 read from T0287.t2k.many.frag # found chain 1h6gA in template set T0287 97 :ELLHAIAEN 1h6gA 551 :RVIHVVTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11535 # 1fi4A.97.362 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 97 :ELLHAIAEN 1fi4A 343 :EAFNHQFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=11536 # 1g5aA.97.80 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 97 :ELLHAIAEN 1g5aA 81 :DIDIARENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11537 # 1gxqA.97.37 read from T0287.t2k.many.frag # found chain 1gxqA in template set Warning: unaligning (T0287)H100 (1gxqA)H164 because H (helix) conformation "forbidden" or filtered. T0287 97 :ELL 1gxqA 161 :KLL T0287 101 :AIAEN 1gxqA 165 :FFMTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=11539 # 1vpbA.97.142 read from T0287.t2k.many.frag # found chain 1vpbA in training set T0287 97 :ELLHAIAEN 1vpbA 131 :EMAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11540 # 1qtwA.97.49 read from T0287.t2k.many.frag # found chain 1qtwA in training set T0287 97 :ELLHAIAEN 1qtwA 50 :DEFKAACEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11541 # 1w79A.97.6 read from T0287.t2k.many.frag # found chain 1w79A in template set T0287 97 :ELLHAIAEN 1w79A 7 :EDIDAILED Number of specific fragments extracted= 1 number of extra gaps= 0 total=11542 # 1a4iA.97.82 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 97 :ELLHAIAEN 1a4iA 83 :KYITSLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=11543 # 1t1vA.97.47 read from T0287.t2k.many.frag # found chain 1t1vA in training set T0287 97 :ELLHAIAEN 1t1vA 48 :DEMRTLAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11544 # 1kpsB.97.140 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 97 :ELLHAIAEN 1kpsB 559 :PLLLAFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11545 # 1jftA.97.32 read from T0287.t2k.many.frag # found chain 1jftA in template set T0287 97 :ELLHAIAEN 1jftA 34 :NAVWAAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11546 # 1colA.97.60 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELL 1colA 61 :ASL T0287 102 :IAE 1colA 66 :ITA Number of specific fragments extracted= 2 number of extra gaps= 2 total=11548 # 1y1pA.98.113 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 98 :LLHAIAENP 1y1pA 115 :ALRAAAATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11549 # 1q92A.98.59 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 98 :LLHAIAENP 1q92A 91 :KAISIWESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11550 # 1n5uA.98.259 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1n5uA 260 :LAKYICE T0287 106 :P 1n5uA 268 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=11552 # 1k5nA.98.166 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1k5nA 167 :WLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11553 # 1uhvA.98.37 read from T0287.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1uhvA 38 :TLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11554 # 1zz1A.98.82 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N105 (1zz1A)L90 because P (beta_P) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1zz1A 83 :NMKRVSN T0287 106 :P 1zz1A 91 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=11556 # 3nul.98.47 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 98 :LLHAIAENP 3nul 49 :GIKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11557 # 1g5aA.98.81 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 98 :LLHAIAENP 1g5aA 82 :IDIARENNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11558 # 1lc5A.98.279 read from T0287.t2k.many.frag # found chain 1lc5A in training set T0287 98 :LLHAIAENP 1lc5A 280 :FYQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11559 # 1t1vA.98.48 read from T0287.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)N105 (1t1vA)N56 because D (zeta) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1t1vA 49 :EMRTLAG T0287 106 :P 1t1vA 57 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=11561 # 1kpsB.98.141 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 98 :LLHAIAENP 1kpsB 560 :LLLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11562 # 1colA.98.61 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 98 :LL 1colA 62 :SL T0287 102 :IAENP 1colA 66 :ITANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11564 # 1q79A.98.400 read from T0287.t2k.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N105 (1q79A)N408 because P (beta_P) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1q79A 401 :LVGSLEK T0287 106 :P 1q79A 409 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=11566 # 1g8mA.98.131 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 98 :LLHAIAENP 1g8mA 132 :LLRAAAKNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=11567 # 1hw1A.98.221 read from T0287.t2k.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)P106 because last residue in template chain is (1hw1A)L230 T0287 98 :LLHAIAEN 1hw1A 222 :IWHRMQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11568 # 1a4iA.98.83 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 98 :LLHAIAENP 1a4iA 84 :YITSLNEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11569 # 1wa5C.98.314 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 98 :LLHAIAENP 1wa5C 315 :FLTAVTRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11570 # 1f74A.98.149 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 98 :LLHAIAENP 1f74A 150 :QFGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11571 # 1q6uA.98.105 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 98 :LLHAIAENP 1q6uA 106 :YREKFAKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11572 # 1zs3A.98.157 read from T0287.t2k.many.frag # found chain 1zs3A in template set Warning: unaligning (T0287)P106 (1zs3A)L166 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1zs3A 158 :VIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11573 # 1lniA.98.17 read from T0287.t2k.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 T0287 98 :LLHAIAEN 1lniA 18 :TLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11574 # 1uq5A.98.209 read from T0287.t2k.many.frag # found chain 1uq5A in training set T0287 98 :LLHAIAENP 1uq5A 214 :LSTAIQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11575 # 1zl0A.98.70 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. T0287 98 :LLHAI 1zl0A 69 :DLHNA T0287 104 :E 1zl0A 75 :D T0287 106 :P 1zl0A 77 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=11578 # 1fi4A.98.363 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 98 :LLHAIAENP 1fi4A 344 :AFNHQFESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11579 # 1w79A.98.7 read from T0287.t2k.many.frag # found chain 1w79A in template set T0287 98 :LLHAIAENP 1w79A 8 :DIDAILEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11580 # 2czrA.98.19 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 98 :LLHAIAENP 2czrA 12 :VYTQVRYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11581 # 1h80A.98.44 read from T0287.t2k.many.frag # found chain 1h80A in training set T0287 98 :LLHAIAENP 1h80A 72 :AINAISRKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11582 # 1gxqA.98.38 read from T0287.t2k.many.frag # found chain 1gxqA in template set T0287 98 :LLHAIAENP 1gxqA 162 :LLHFFMTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11583 # 1no7A.98.162 read from T0287.t2k.many.frag # found chain 1no7A in template set T0287 98 :LLHAIAENP 1no7A 613 :AVRGAFDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11584 # 1vpbA.98.143 read from T0287.t2k.many.frag # found chain 1vpbA in training set Warning: unaligning (T0287)P106 (1vpbA)A140 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1vpbA 132 :MAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11585 # 1q92A.99.60 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N105 (1q92A)S98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1q92A 92 :AISIWE T0287 106 :P 1q92A 99 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=11587 # 1y1pA.99.114 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 99 :LHAIAENPN 1y1pA 116 :LRAAAATPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11588 # 1n5uA.99.260 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 99 :LHAIAENPN 1n5uA 261 :AKYICENQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11589 # 1g5aA.99.82 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 99 :LHAIAENPN 1g5aA 83 :DIARENNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11590 # 3nul.99.48 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 99 :LHAIAENPN 3nul 50 :IKKDFEEPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11591 # 1colA.99.62 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 99 :L 1colA 63 :L T0287 102 :IAENPN 1colA 66 :ITANPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11593 # 1f74A.99.150 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 99 :LHAIAENPN 1f74A 151 :FGELYKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11594 # 1lc5A.99.280 read from T0287.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N107 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1lc5A 281 :YQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11595 # 1zz1A.99.83 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 T0287 99 :LHAIAENP 1zz1A 84 :MKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11596 # 1t1vA.99.49 read from T0287.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIA 1t1vA 50 :MRTLA T0287 105 :NPN 1t1vA 56 :NPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11598 # 1kpsB.99.142 read from T0287.t2k.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1kpsB 561 :LLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11599 # 1uhvA.99.38 read from T0287.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1uhvA 39 :LKYVKEN T0287 107 :N 1uhvA 47 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=11601 # 1k5nA.99.167 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1k5nA 168 :LRRYLEN T0287 107 :N 1k5nA 176 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=11603 # 1h80A.99.45 read from T0287.t2k.many.frag # found chain 1h80A in training set T0287 99 :LHAIAENPN 1h80A 73 :INAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11604 # 1a4iA.99.84 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 99 :LHAIAENPN 1a4iA 85 :ITSLNEDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=11605 # 1q79A.99.401 read from T0287.t2k.many.frag # found chain 1q79A in template set T0287 99 :LHAIAENPN 1q79A 402 :VGSLEKNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11606 # 1g8mA.99.132 read from T0287.t2k.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)N105 (1g8mA)N139 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1g8mA 133 :LRAAAK T0287 106 :PN 1g8mA 140 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11608 # 1q6uA.99.106 read from T0287.t2k.many.frag # found chain 1q6uA in template set T0287 99 :LHAIAENPN 1q6uA 107 :REKFAKEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11609 # 1gvjA.99.79 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIA 1gvjA 375 :WGKRK T0287 105 :NPN 1gvjA 381 :KPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11611 # 2ffsA.99.28 read from T0287.t2k.many.frag # found chain 2ffsA in template set T0287 99 :LHAIAENPN 2ffsA 29 :LVCRAREPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11612 # 1fi4A.99.364 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 99 :LHAIAENPN 1fi4A 345 :FNHQFESSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11613 # 1wa5C.99.315 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 99 :LHAIAENPN 1wa5C 316 :LTAVTRIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11614 # 1zl0A.99.71 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAI 1zl0A 70 :LHNA T0287 104 :ENPN 1zl0A 75 :DMPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11616 # 1rloA.99.92 read from T0287.t2k.many.frag # found chain 1rloA in template set T0287 99 :LHAIAENPN 1rloA 93 :IGELLKDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11617 # 1z5zA.99.155 read from T0287.t2k.many.frag # found chain 1z5zA in template set Warning: unaligning (T0287)N105 (1z5zA)N797 because D (zeta) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1z5zA 791 :ISKFQN T0287 106 :PN 1z5zA 798 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11619 # 1ye8A.99.121 read from T0287.t2k.many.frag # found chain 1ye8A in training set T0287 99 :LHAIAENPN 1ye8A 122 :VRQIMHDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11620 # 1vjhA.99.20 read from T0287.t2k.many.frag # found chain 1vjhA in template set T0287 99 :LHAIAENPN 1vjhA 21 :FSAFVEDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11621 # 1uq5A.99.210 read from T0287.t2k.many.frag # found chain 1uq5A in training set Warning: unaligning (T0287)N107 (1uq5A)Q223 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1uq5A 215 :STAIQESN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11622 # 1lniA.99.18 read from T0287.t2k.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)N105 (1lniA)D25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1lniA)P27 T0287 99 :LHAIAE 1lniA 19 :LNLIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=11623 # 1w79A.99.8 read from T0287.t2k.many.frag # found chain 1w79A in template set T0287 99 :LHAIAENPN 1w79A 9 :IDAILEDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11624 # 3nul.100.49 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 100 :HAIAENPNF 3nul 51 :KKDFEEPGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11625 # 1n5uA.100.261 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 100 :HAIAENPNF 1n5uA 262 :KYICENQDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11626 # 1g5aA.100.83 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N107 (1g5aA)D91 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1g5aA 84 :IARENNP T0287 108 :F 1g5aA 92 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=11628 # 1y1pA.100.115 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 100 :HAIAENPNF 1y1pA 117 :RAAAATPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11629 # 1q92A.100.61 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1q92A 93 :ISIWESK T0287 108 :F 1q92A 101 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=11631 # 2ffsA.100.29 read from T0287.t2k.many.frag # found chain 2ffsA in template set T0287 100 :HAIAENPNF 2ffsA 30 :VCRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11632 # 1gvjA.100.80 read from T0287.t2k.many.frag # found chain 1gvjA in training set T0287 100 :HAIAENPNF 1gvjA 376 :GKRKNKPKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=11633 # 1f74A.100.151 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 100 :HAIAENPNF 1f74A 152 :GELYKNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11634 # 1colA.100.63 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 102 :IAENPNF 1colA 66 :ITANPAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=11635 # 1kpsB.100.143 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 100 :HAIAENPNF 1kpsB 562 :LAFVTKPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11636 # 1yw4A.100.236 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 100 :HAIAENPNF 1yw4A 237 :RGLLSNPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11637 # 1zz1A.100.84 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N105 (1zz1A)L90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 T0287 100 :HAIAE 1zz1A 85 :KRVSN T0287 106 :P 1zz1A 91 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=11639 # 1k5nA.100.168 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1k5nA 169 :RRYLEN T0287 107 :NF 1k5nA 176 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11641 # 1z5zA.100.156 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 100 :HAIAENPNF 1z5zA 792 :SKFQNNPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11642 # 1g8mA.100.133 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 100 :HAIAENPNF 1g8mA 134 :RAAAKNHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11643 # 1fi4A.100.365 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1fi4A 346 :NHQFESS T0287 108 :F 1fi4A 354 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=11645 # 1t1vA.100.50 read from T0287.t2k.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIA 1t1vA 51 :RTLA T0287 105 :NPNF 1t1vA 56 :NPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11647 # 1h80A.100.46 read from T0287.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)N107 (1h80A)N81 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1h80A 74 :NAISRKP T0287 108 :F 1h80A 82 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=11649 # 2bptA.100.685 read from T0287.t2k.many.frag # found chain 2bptA in template set Warning: unaligning (T0287)N105 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 2bptA 686 :AQMIS T0287 106 :PNF 2bptA 692 :PNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11651 # 1lc5A.100.281 read from T0287.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N107 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1lc5A 282 :QALCQLP T0287 108 :F 1lc5A 290 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=11653 # 1a4iA.100.85 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 100 :HAIAENPNF 1a4iA 86 :TSLNEDSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11654 # 1q6uA.100.107 read from T0287.t2k.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N107 (1q6uA)G115 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1q6uA 108 :EKFAKEK T0287 108 :F 1q6uA 116 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11656 # 1l0bA.100.23 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1l0bA 1612 :QKFAEK T0287 107 :NF 1l0bA 1619 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11658 # 1zl0A.100.72 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)H100 (1zl0A)H71 because H (helix) conformation "forbidden" or filtered. T0287 101 :AIAENPNF 1zl0A 72 :NAFDMPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=11659 # 1vjhA.100.21 read from T0287.t2k.many.frag # found chain 1vjhA in template set T0287 100 :HAIAENPNF 1vjhA 22 :SAFVEDTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11660 # 1z7xW.100.418 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 100 :HAIAENPNF 1z7xW 418 :VESVRQPGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=11661 # 1ye8A.100.122 read from T0287.t2k.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1ye8A 123 :RQIMH T0287 106 :PNF 1ye8A 129 :PNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11663 # 1l9vA.100.114 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 100 :HAIAENPNF 1l9vA 115 :VIRKENPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11664 # 1lu4A.100.47 read from T0287.t2k.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N105 (1lu4A)N1053 because D (zeta) conformation "forbidden" or filtered. T0287 100 :HAIAE 1lu4A 1048 :QVAAA T0287 106 :PNF 1lu4A 1054 :PAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11666 # 1sra.100.44 read from T0287.t2k.many.frag # found chain 1sra in template set T0287 100 :HAIAENPNF 1sra 180 :KKIHENEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11667 # 3nul.101.50 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 101 :AIAENPNFL 3nul 52 :KDFEEPGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11668 # 1g5aA.101.84 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 101 :AIAENPNFL 1g5aA 85 :ARENNPDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11669 # 1n5uA.101.262 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 101 :AIAENPNFL 1n5uA 263 :YICENQDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11670 # 2ffsA.101.30 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 T0287 101 :AIAENPNF 2ffsA 31 :CRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=11671 # 1gvjA.101.81 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENPNF 1gvjA 377 :KRKNKPKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=11672 # 1q92A.101.62 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 101 :AIAENPNFL 1q92A 94 :SIWESKNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11673 # 1yw4A.101.237 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 101 :AIAENPNFL 1yw4A 238 :GLLSNPQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11674 # 1fi4A.101.366 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 101 :AIAENPNFL 1fi4A 347 :HQFESSNFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11675 # 1kpsB.101.144 read from T0287.t2k.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAENP 1kpsB 563 :AFVTKP T0287 108 :FL 1kpsB 570 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11677 # 1colA.101.64 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)F108 (1colA)M72 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAENPN 1colA 66 :ITANPA T0287 109 :L 1colA 73 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=11679 # 1f74A.101.152 read from T0287.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)A103 (1f74A)Y155 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AI 1f74A 153 :EL T0287 104 :ENPNFL 1f74A 156 :KNPKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11681 # 1y1pA.101.116 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 101 :AIAENPNFL 1y1pA 118 :AAAATPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11682 # 1w23A.101.313 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1w23A 314 :AKAKE T0287 107 :NFL 1w23A 320 :GFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11684 # 2bptA.101.686 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 101 :AIAENPNFL 2bptA 687 :QMISNPNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11685 # 1k5nA.101.169 read from T0287.t2k.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1k5nA 170 :RYLEN T0287 107 :NFL 1k5nA 176 :KET Number of specific fragments extracted= 2 number of extra gaps= 1 total=11687 # 1lu4A.101.48 read from T0287.t2k.many.frag # found chain 1lu4A in training set T0287 101 :AIAENPNFL 1lu4A 1049 :VAAANPAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11688 # 1g8mA.101.134 read from T0287.t2k.many.frag # found chain 1g8mA in training set T0287 101 :AIAENPNFL 1g8mA 135 :AAAKNHARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11689 # 1z5zA.101.157 read from T0287.t2k.many.frag # found chain 1z5zA in template set Warning: unaligning (T0287)N105 (1z5zA)N797 because D (zeta) conformation "forbidden" or filtered. T0287 101 :AIAE 1z5zA 793 :KFQN T0287 106 :PNFL 1z5zA 798 :PSVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11691 # 1l0bA.101.24 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l0bA 1613 :KFAEK T0287 108 :FL 1l0bA 1620 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11693 # 1z7xW.101.419 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 101 :AIAENPNFL 1z7xW 419 :ESVRQPGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11694 # 1sra.101.45 read from T0287.t2k.many.frag # found chain 1sra in template set Warning: unaligning (T0287)N105 (1sra)N185 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1sra 181 :KIHE T0287 106 :PNFL 1sra 186 :EKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11696 # 1l9vA.101.115 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N105 (1l9vA)N120 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1l9vA 116 :IRKE T0287 106 :PNFL 1l9vA 121 :PQDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11698 # 1vjhA.101.22 read from T0287.t2k.many.frag # found chain 1vjhA in template set T0287 101 :AIAENPNFL 1vjhA 23 :AFVEDTNRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11699 # 1h80A.101.47 read from T0287.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENPN 1h80A 75 :AISRKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11700 # 1l8aA.101.418 read from T0287.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l8aA 419 :HIRDR T0287 107 :NFL 1l8aA 425 :NVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11702 # 1zl0A.101.73 read from T0287.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1zl0A)D78 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AI 1zl0A 72 :NA T0287 104 :E 1zl0A 75 :D T0287 106 :P 1zl0A 77 :P T0287 108 :FL 1zl0A 79 :IT Number of specific fragments extracted= 4 number of extra gaps= 3 total=11706 # 1uehA.101.159 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAEN 1uehA 160 :EKVQQ T0287 107 :NFL 1uehA 166 :NLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=11708 # 1ye8A.101.123 read from T0287.t2k.many.frag # found chain 1ye8A in training set T0287 101 :AIAENPNFL 1ye8A 124 :QIMHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11709 # 1sbxA.101.54 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1sbxA 141 :AVCDE T0287 107 :NFL 1sbxA 147 :HIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=11711 # 1zz1A.101.85 read from T0287.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 Warning: unaligning (T0287)L109 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENP 1zz1A 86 :RVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11712 # 3nul.102.51 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 102 :IAENPNFLF 3nul 53 :DFEEPGFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11713 # 1g5aA.102.85 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 102 :IAENPNFLF 1g5aA 86 :RENNPDWIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11714 # 1n5uA.102.263 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 102 :IAENPNFLF 1n5uA 264 :ICENQDSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11715 # 1gvjA.102.82 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1gvjA)K383 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IA 1gvjA 378 :RK T0287 105 :NP 1gvjA 381 :KP T0287 108 :FLF 1gvjA 384 :MNY Number of specific fragments extracted= 3 number of extra gaps= 2 total=11718 # 2ffsA.102.31 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 102 :IAENPNF 2ffsA 32 :RAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=11719 # 1colA.102.65 read from T0287.t2k.many.frag # found chain 1colA in template set T0287 102 :IAENPNFLF 1colA 66 :ITANPAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11720 # 1q92A.102.63 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 102 :IAENPNFLF 1q92A 95 :IWESKNFFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11721 # 1yw4A.102.238 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 102 :IAENPNFLF 1yw4A 239 :LLSNPQANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11722 # 1w23A.102.314 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1w23A 315 :KAKE T0287 108 :FLF 1w23A 321 :FVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11724 # 1lu4A.102.49 read from T0287.t2k.many.frag # found chain 1lu4A in training set T0287 102 :IAENPNFLF 1lu4A 1050 :AAANPAVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11725 # 1f74A.102.153 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 102 :IAENPNFLF 1f74A 154 :LYKNPKVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11726 # 1kpsB.102.145 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 102 :IAENPNFLF 1kpsB 564 :FVTKPNGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11727 # 1z5zA.102.158 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 102 :IAENPNFLF 1z5zA 794 :FQNNPSVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11728 # 1fi4A.102.367 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAENP 1fi4A 348 :QFESS T0287 108 :FLF 1fi4A 354 :FTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11730 # 2bptA.102.687 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 102 :IAENPNFLF 2bptA 688 :MISNPNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11731 # 1y1pA.102.117 read from T0287.t2k.many.frag # found chain 1y1pA in template set T0287 102 :IAENPNFLF 1y1pA 119 :AAATPSVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11732 # 1l9vA.102.116 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 102 :IAENPNFLF 1l9vA 117 :RKENPQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11733 # 1z7xW.102.420 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 102 :IAENPNFLF 1z7xW 420 :SVRQPGCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11734 # 1l0bA.102.25 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1l0bA 1614 :FAEK T0287 108 :FLF 1l0bA 1620 :LAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11736 # 1zl0A.102.74 read from T0287.t2k.many.frag # found chain 1zl0A in template set T0287 102 :IAENPNFLF 1zl0A 73 :AFDMPDITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11737 # 1sbxA.102.55 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1sbxA 142 :VCDE T0287 107 :NFLF 1sbxA 147 :HIYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=11739 # 1sra.102.46 read from T0287.t2k.many.frag # found chain 1sra in template set Warning: unaligning (T0287)N105 (1sra)N185 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1sra 182 :IHE T0287 106 :PNFLF 1sra 186 :EKRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11741 # 1yt8A.102.452 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. T0287 102 :IA 1yt8A 453 :LS T0287 105 :NPNFLF 1yt8A 456 :KPVFLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11743 # 1h80A.102.48 read from T0287.t2k.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IAENPN 1h80A 76 :ISRKPN T0287 110 :F 1h80A 84 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=11745 # 1musA.102.62 read from T0287.t2k.many.frag # found chain 1musA in template set T0287 102 :IAENPNFLF 1musA 63 :FIRNPNVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11746 # 1ye8A.102.124 read from T0287.t2k.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 T0287 102 :IAE 1ye8A 125 :IMH T0287 106 :PNFL 1ye8A 129 :PNVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=11748 # 1rp0A.102.57 read from T0287.t2k.many.frag # found chain 1rp0A in training set T0287 102 :IAENPNFLF 1rp0A 58 :ISKNPNVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11749 # 1uehA.102.160 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1uehA 161 :KVQQ T0287 107 :NFLF 1uehA 166 :NLQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11751 # 1l8aA.102.419 read from T0287.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1l8aA 420 :IRDR T0287 107 :NFLF 1l8aA 425 :NVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11753 # 1a4iA.102.87 read from T0287.t2k.many.frag # found chain 1a4iA in training set T0287 102 :IAENPNFLF 1a4iA 88 :LNEDSTVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=11754 # 3nul.103.52 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 103 :AENPNFLFS 3nul 54 :FEEPGFLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11755 # 1g5aA.103.86 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N107 (1g5aA)D91 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1g5aA 87 :ENNP T0287 108 :FLFS 1g5aA 92 :WILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11757 # 1gvjA.103.83 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1gvjA 379 :K T0287 105 :NPNFLFS 1gvjA 381 :KPKMNYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11759 # 1n5uA.103.264 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AE 1n5uA 265 :CE T0287 106 :PNFLFS 1n5uA 268 :QDSISS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11761 # 2ffsA.103.32 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 103 :AENPNF 2ffsA 33 :AREPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11763 # 1yw4A.103.239 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 103 :AENPNFLFS 1yw4A 240 :LSNPQANVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11764 # 1kpsB.103.146 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 103 :AENPNFLFS 1kpsB 565 :VTKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11765 # 1z5zA.103.159 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 103 :AENPNFLFS 1z5zA 795 :QNNPSVKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11766 # 1lu4A.103.50 read from T0287.t2k.many.frag # found chain 1lu4A in training set T0287 103 :AENPNFLFS 1lu4A 1051 :AANPAVTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11767 # 1colA.103.66 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1colA)N75 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AE 1colA 67 :TA T0287 106 :PNFLF 1colA 70 :PAMKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=11769 # 1q92A.103.64 read from T0287.t2k.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AENP 1q92A 96 :WESK T0287 108 :FLFS 1q92A 101 :FFFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11771 # 1f74A.103.154 read from T0287.t2k.many.frag # found chain 1f74A in training set T0287 103 :AENPNFLFS 1f74A 155 :YKNPKVLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11772 # 1yt8A.103.453 read from T0287.t2k.many.frag # found chain 1yt8A in template set T0287 103 :AENPNFLFS 1yt8A 454 :SGKPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11773 # 1w23A.103.315 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 1w23A 316 :AKE T0287 108 :FLFS 1w23A 321 :FVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11775 # 1l9vA.103.117 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 103 :AENPNFLFS 1l9vA 118 :KENPQDILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=11776 # 1z7xW.103.421 read from T0287.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AE 1z7xW 421 :VR T0287 106 :PNFLFS 1z7xW 424 :PGCLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11778 # 2bptA.103.688 read from T0287.t2k.many.frag # found chain 2bptA in template set T0287 103 :AENPNFLFS 2bptA 689 :ISNPNARRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11779 # 1fi4A.103.368 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1fi4A 349 :FESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=11780 # 2jdxA.103.201 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 2jdxA 239 :AAQ T0287 107 :NFLFS 2jdxA 243 :KFVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11782 # 1sbxA.103.56 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1sbxA 143 :CDE T0287 107 :NFLFS 1sbxA 147 :HIYCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11784 # 1l0bA.103.26 read from T0287.t2k.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1l0bA 1615 :AEK T0287 107 :NFLFS 1l0bA 1619 :RLALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=11786 # 1eokA.103.18 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 103 :AENPNFLFS 1eokA 19 :GRNPTFKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11787 # 1ye8A.103.125 read from T0287.t2k.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1ye8A)V134 T0287 103 :AENPNFL 1ye8A 126 :MHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11788 # 1musA.103.63 read from T0287.t2k.many.frag # found chain 1musA in template set T0287 103 :AENPNFLFS 1musA 64 :IRNPNVSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11789 # 1rlzA.103.213 read from T0287.t2k.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)N105 (1rlzA)N216 because E (beta_S) conformation "forbidden" or filtered. T0287 103 :AE 1rlzA 214 :IN T0287 106 :PNFLFS 1rlzA 217 :PESVYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=11791 # 1oygA.103.31 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)S111 (1oygA)P66 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1oygA 58 :QKNEKYQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11792 # 2f2gA.103.95 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 2f2gA 96 :GSK T0287 107 :NFLFS 2f2gA 100 :DVDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11794 # 1kcfA.103.198 read from T0287.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0287)P106 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1kcfA 199 :IDG T0287 107 :NFLFS 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11796 # 1rp0A.103.58 read from T0287.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0287)S111 (1rp0A)A67 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1rp0A 59 :SKNPNVQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11797 # 1x9iA.103.8 read from T0287.t2k.many.frag # found chain 1x9iA in training set T0287 103 :AENPNFLFS 1x9iA 9 :LNWENYILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11798 # 1gvjA.104.84 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FSK 1gvjA 386 :YEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=11800 # 3nul.104.53 read from T0287.t2k.many.frag # found chain 3nul in training set T0287 104 :ENPNFLFSK 3nul 55 :EEPGFLAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11801 # 1yw4A.104.240 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1yw4A 241 :SNPQANVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=11802 # 1n5uA.104.265 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 104 :E 1n5uA 266 :E T0287 106 :PNFLFSK 1n5uA 268 :QDSISSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11804 # 1kpsB.104.147 read from T0287.t2k.many.frag # found chain 1kpsB in template set T0287 104 :ENPNFLFSK 1kpsB 566 :TKPNGALET Number of specific fragments extracted= 1 number of extra gaps= 0 total=11805 # 1g5aA.104.87 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N107 (1g5aA)D91 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENP 1g5aA 88 :NNP T0287 108 :FLFSK 1g5aA 92 :WILSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11807 # 2ffsA.104.33 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPNF 2ffsA 34 :REPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=11809 # 1z5zA.104.160 read from T0287.t2k.many.frag # found chain 1z5zA in template set T0287 104 :ENPNFLFSK 1z5zA 796 :NNPSVKFIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11810 # 1eokA.104.19 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 104 :ENPNFLFSK 1eokA 20 :RNPTFKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11811 # 1x9iA.104.9 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)N107 (1x9iA)N13 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1x9iA)Y14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENP 1x9iA 10 :NWE T0287 109 :LFS 1x9iA 15 :ILR Number of specific fragments extracted= 2 number of extra gaps= 2 total=11813 # 1z7xW.104.422 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 104 :ENPNFLFSK 1z7xW 422 :RQPGCLLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11814 # 2jdxA.104.202 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 2jdxA 240 :AQ T0287 107 :NFLFSK 2jdxA 243 :KFVTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=11816 # 1oygA.104.32 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 104 :ENPNFLFSK 1oygA 59 :KNEKYQVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11817 # 1q92A.104.65 read from T0287.t2k.many.frag # found chain 1q92A in training set T0287 104 :ENPNFLFSK 1q92A 97 :ESKNFFFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11818 # 1yt8A.104.454 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 2 total=11819 # 1sbxA.104.57 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1sbxA 144 :DE T0287 107 :NFLFSK 1sbxA 147 :HIYCSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11821 # 1lu4A.104.51 read from T0287.t2k.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N105 (1lu4A)N1053 because D (zeta) conformation "forbidden" or filtered. T0287 104 :E 1lu4A 1052 :A T0287 106 :PNFLFSK 1lu4A 1054 :PAVTFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11823 # 1colA.104.67 read from T0287.t2k.many.frag # found chain 1colA in template set T0287 104 :ENPNFLFSK 1colA 68 :ANPAMKINK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11824 # 1ox0A.104.105 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1ox0A 87 :NHANLDVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11825 # 1rlzA.104.214 read from T0287.t2k.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 105 :NPNFLFSK 1rlzA 216 :NPESVYYW Number of specific fragments extracted= 1 number of extra gaps= 1 total=11826 # 1l9vA.104.118 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N105 (1l9vA)N120 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :E 1l9vA 119 :E T0287 106 :PNFLFSK 1l9vA 121 :PQDILFH Number of specific fragments extracted= 2 number of extra gaps= 1 total=11828 # 2f2gA.104.96 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (2f2gA)T105 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 2f2gA 97 :SK T0287 107 :NFLFS 2f2gA 100 :DVDFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=11830 # 1fi4A.104.369 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLF 1fi4A 350 :ESSNFTA T0287 112 :K 1fi4A 358 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=11832 # 1tjvA.104.400 read from T0287.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1tjvA 401 :ET T0287 108 :FLFSK 1tjvA 405 :ITINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11834 # 1qlmA.104.269 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1qlmA 270 :EE T0287 107 :N 1qlmA 273 :D T0287 109 :LFSK 1qlmA 275 :DFYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=11837 # 1w23A.104.279 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)N282 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G283 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 280 :ES T0287 108 :FLFSK 1w23A 284 :FYVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=11839 # 1w23A.104.316 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 317 :KE T0287 107 :NFLFSK 1w23A 320 :GFVGLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=11841 # 1pea.104.301 read from T0287.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1pea 302 :AA T0287 107 :NFLFSK 1pea 305 :NWRVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=11843 # 1musA.104.64 read from T0287.t2k.many.frag # found chain 1musA in template set T0287 104 :ENPNFLFSK 1musA 65 :RNPNVSAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11844 # 1rz4A.104.55 read from T0287.t2k.many.frag # found chain 1rz4A in template set T0287 104 :ENPNFLFSK 1rz4A 56 :FNPAFFQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=11845 # 1yw4A.105.241 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yw4A 242 :NPQANVP T0287 113 :F 1yw4A 250 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=11847 # 1gvjA.105.85 read from T0287.t2k.many.frag # found chain 1gvjA in training set T0287 105 :NPNFLFSKF 1gvjA 381 :KPKMNYEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11848 # 1oygA.105.33 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)K112 (1oygA)E67 because P (beta_P) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1oygA 60 :NEKYQVP T0287 113 :F 1oygA 68 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=11850 # 1n5uA.105.266 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 105 :NPNFLFSKF 1n5uA 267 :NQDSISSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11851 # 1ox0A.105.106 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 T0287 105 :NPNFLFSK 1ox0A 88 :HANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=11852 # 1sbxA.105.58 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1sbxA 145 :E T0287 108 :FLFSKF 1sbxA 148 :IYCSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=11854 # 1eokA.105.20 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 105 :NPNFLFSKF 1eokA 21 :NPTFKLKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=11855 # 1x9iA.105.10 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1x9iA 11 :WENYILR T0287 113 :F 1x9iA 19 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=11857 # 2ffsA.105.34 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NPNF 2ffsA 35 :EPQY T0287 111 :S 2ffsA 41 :V T0287 113 :F 2ffsA 43 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=11860 # 1qlmA.105.270 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1qlmA 271 :E T0287 107 :N 1qlmA 273 :D T0287 109 :LFSKF 1qlmA 275 :DFYKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=11863 # 2jdxA.105.203 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. T0287 105 :N 2jdxA 241 :Q T0287 108 :FLFSKF 2jdxA 244 :FVTTEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11865 # 1tjvA.105.401 read from T0287.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1tjvA 402 :T T0287 108 :FLFSKF 1tjvA 405 :ITINKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11867 # 2f2gA.105.97 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 2f2gA 98 :K T0287 107 :NFLFSKF 2f2gA 100 :DVDFSTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11869 # 1w23A.105.317 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1w23A 318 :E T0287 108 :FLFSKF 1w23A 321 :FVGLNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=11871 # 1pea.105.302 read from T0287.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1pea 303 :A T0287 107 :NFLFSKF 1pea 305 :NWRVEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11873 # 1g5aA.105.88 read from T0287.t2k.many.frag # found chain 1g5aA in training set T0287 105 :NPNFLFSKF 1g5aA 89 :NPDWILSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11874 # 1fi4A.105.370 read from T0287.t2k.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLF 1fi4A 351 :SSNFTA T0287 112 :KF 1fi4A 358 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=11876 # 1zvdA.105.240 read from T0287.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)F110 (1zvdA)L614 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NPNFL 1zvdA 609 :IPQHL T0287 111 :SKF 1zvdA 615 :KTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11878 # 3nul.105.54 read from T0287.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0287)F113 (3nul)G64 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NPNFLFSK 3nul 56 :EPGFLAPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=11879 # 1kpsB.105.148 read from T0287.t2k.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1kpsB 567 :KPNGALE T0287 113 :F 1kpsB 575 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=11881 # 1rz4A.105.56 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F108 (1rz4A)F60 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NPN 1rz4A 57 :NPA T0287 109 :LFSKF 1rz4A 61 :FQTTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=11883 # 1yt8A.105.455 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11884 # 1uehA.105.163 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1uehA 164 :Q T0287 108 :FLFSKF 1uehA 167 :LQPDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=11886 # 2b59B.105.152 read from T0287.t2k.many.frag # found chain 2b59B in template set T0287 105 :NPNFLFSKF 2b59B 153 :HFGATSSDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=11887 # 1u8xX.105.455 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 T0287 105 :N 1u8xX 433 :A T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=11890 # 1z7xW.105.423 read from T0287.t2k.many.frag # found chain 1z7xW in template set T0287 105 :NPNFLFSKF 1z7xW 423 :QPGCLLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11891 # 1colA.105.68 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)S111 (1colA)N75 because P (beta_P) conformation "forbidden" or filtered. T0287 105 :NPNFLF 1colA 69 :NPAMKI T0287 112 :KF 1colA 76 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=11893 # 1s4nA.105.203 read from T0287.t2k.many.frag # found chain 1s4nA in template set T0287 105 :NPNFLFSKF 1s4nA 298 :NPEYLDENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=11894 # 1wteA.105.97 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 105 :NP 1wteA 98 :NE T0287 108 :FLFSKF 1wteA 101 :FIHPCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11896 # 1oqjA.105.76 read from T0287.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1oqjA 162 :S T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :F 1oqjA 170 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=11899 # 1ox0A.106.107 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)N107 (1ox0A)N90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 106 :P 1ox0A 89 :A T0287 108 :FLFSK 1ox0A 91 :LDVEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=11901 # 1oygA.106.34 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)F108 (1oygA)Y63 because G (3-10) conformation "forbidden" or filtered. T0287 106 :PN 1oygA 61 :EK T0287 109 :LFSKFD 1oygA 64 :QVPEFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11903 # 1yw4A.106.242 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 106 :PNFLFSKFD 1yw4A 243 :PQANVPDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11904 # 1gvjA.106.86 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)N107 (1gvjA)K383 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :P 1gvjA 382 :P T0287 108 :F 1gvjA 384 :M T0287 110 :FSKFD 1gvjA 386 :YEKLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=11907 # 1n5uA.106.267 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 106 :PNFLFSKFD 1n5uA 268 :QDSISSKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11908 # 1zvdA.106.241 read from T0287.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1zvdA 610 :PQHLLKTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=11909 # 1eokA.106.21 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)K112 (1eokA)D28 because G (3-10) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1eokA 22 :PTFKLK T0287 113 :FD 1eokA 29 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=11911 # 1sbxA.106.59 read from T0287.t2k.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1sbxA 147 :HIYCSRCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=11912 # 1x9iA.106.11 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLFS 1x9iA 12 :ENYILR T0287 113 :FD 1x9iA 19 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11914 # 1pea.106.303 read from T0287.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1pea 306 :WRVEDVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=11915 # 2f2gA.106.98 read from T0287.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 2f2gA 100 :DVDFSTVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=11916 # 1qlmA.106.271 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFD 1qlmA 275 :DFYKID Number of specific fragments extracted= 1 number of extra gaps= 1 total=11917 # 1tjvA.106.402 read from T0287.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1tjvA 405 :ITINKL Number of specific fragments extracted= 1 number of extra gaps= 2 total=11918 # 2jdxA.106.204 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 2jdxA 244 :FVTTEFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11919 # 1odmA.106.167 read from T0287.t2k.many.frag # found chain 1odmA in training set Warning: unaligning (T0287)F113 (1odmA)F175 because D (zeta) conformation "forbidden" or filtered. T0287 106 :PNFLFSK 1odmA 168 :ENFFARH T0287 114 :D 1odmA 176 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=11921 # 1uehA.106.164 read from T0287.t2k.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1uehA 167 :LQPDQID Number of specific fragments extracted= 1 number of extra gaps= 1 total=11922 # 1t4bA.106.210 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)P106 (1t4bA)G211 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1t4bA 212 :ELPVDNFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=11923 # 2ffsA.106.35 read from T0287.t2k.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :PNF 2ffsA 36 :PQY T0287 111 :S 2ffsA 41 :V T0287 113 :FD 2ffsA 43 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=11926 # 1yt8A.106.456 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1yt8A 457 :PVFLLD T0287 114 :D 1yt8A 465 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=11928 # 1pkhA.106.14 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)P106 (1pkhA)K15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :F 1pkhA 22 :F Number of specific fragments extracted= 2 number of extra gaps= 3 total=11930 # 2b59B.106.153 read from T0287.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :P 2b59B 154 :F T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11932 # 1fi4A.106.371 read from T0287.t2k.many.frag # found chain 1fi4A in template set T0287 106 :PNFLFSKFD 1fi4A 352 :SNFTARELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11933 # 1u8xX.106.456 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 3 total=11935 # 1w23A.106.318 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFL 1w23A 320 :GFV T0287 111 :S 1w23A 324 :L T0287 113 :F 1w23A 326 :G Number of specific fragments extracted= 3 number of extra gaps= 4 total=11938 # 1u8xX.106.316 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 106 :P 1u8xX 294 :E T0287 109 :L 1u8xX 297 :I T0287 113 :FD 1u8xX 301 :CD Number of specific fragments extracted= 3 number of extra gaps= 2 total=11941 # 1up8A.106.170 read from T0287.t2k.many.frag # found chain 1up8A in template set T0287 106 :PNFLFSKFD 1up8A 170 :REIEFSEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11942 # 1qw9A.106.11 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 106 :PNFLF 1qw9A 12 :KDFKI T0287 113 :FD 1qw9A 19 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=11944 # 1wteA.106.98 read from T0287.t2k.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1wteA)F106 because G (3-10) conformation "forbidden" or filtered. T0287 106 :P 1wteA 99 :E T0287 108 :FLFSK 1wteA 101 :FIHPC T0287 114 :D 1wteA 107 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=11947 # 1s4nA.106.204 read from T0287.t2k.many.frag # found chain 1s4nA in template set T0287 106 :PNFLFSKFD 1s4nA 299 :PEYLDENNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11948 # 1oqjA.106.77 read from T0287.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FD 1oqjA 170 :HD Number of specific fragments extracted= 2 number of extra gaps= 2 total=11950 # 1oygA.107.35 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 107 :NFLFSKFDR 1oygA 62 :KYQVPEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11951 # 1ox0A.107.108 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 107 :NFLFSK 1ox0A 90 :NLDVEA T0287 115 :R 1ox0A 98 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=11953 # 1zvdA.107.242 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 107 :NFLFSKFDR 1zvdA 611 :QHLLKTFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11954 # 1yw4A.107.243 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 107 :NFLFSKFDR 1yw4A 244 :QANVPDLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11955 # 1pkhA.107.15 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :F 1pkhA 22 :F T0287 115 :R 1pkhA 24 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=11958 # 1eokA.107.22 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 107 :NFLFSKFDR 1eokA 23 :TFKLKDIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=11959 # 1tjvA.107.403 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 107 :NFLFSKFDR 1tjvA 404 :GITINKLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=11960 # 1qlmA.107.272 read from T0287.t2k.many.frag # found chain 1qlmA in template set T0287 107 :NFLFSKFDR 1qlmA 273 :DYDFYKIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11961 # 1t4bA.107.211 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 107 :NFLFSKFDR 1t4bA 212 :ELPVDNFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=11962 # 1sbxA.107.60 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 107 :NFLFSKFDR 1sbxA 147 :HIYCSRCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=11963 # 1pea.107.304 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 107 :NFLFSKFDR 1pea 305 :NWRVEDVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11964 # 1qw9A.107.12 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 107 :NFLF 1qw9A 13 :DFKI T0287 113 :FDR 1qw9A 19 :IDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11966 # 1n5uA.107.268 read from T0287.t2k.many.frag # found chain 1n5uA in template set T0287 107 :NFLFSKFDR 1n5uA 269 :DSISSKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11967 # 1yt8A.107.457 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)N107 (1yt8A)V458 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1yt8A)D462 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLF 1yt8A 459 :FLL T0287 113 :FDR 1yt8A 464 :GTS Number of specific fragments extracted= 2 number of extra gaps= 2 total=11969 # 1y93A.107.41 read from T0287.t2k.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1y93A 146 :PLKFSKIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=11970 # 1up8A.107.171 read from T0287.t2k.many.frag # found chain 1up8A in template set Warning: unaligning (T0287)K112 (1up8A)E176 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFS 1up8A 171 :EIEFS T0287 113 :FDR 1up8A 177 :FDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=11972 # 2f2gA.107.99 read from T0287.t2k.many.frag # found chain 2f2gA in template set T0287 107 :NFLFSKFDR 2f2gA 100 :DVDFSTVVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11973 # 1x9iA.107.12 read from T0287.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFS 1x9iA 13 :NYILR T0287 113 :FDR 1x9iA 19 :VDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=11975 # 1uehA.107.165 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 107 :NFLFSKFDR 1uehA 166 :NLQPDQIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11976 # 1gvjA.107.87 read from T0287.t2k.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NF 1gvjA 383 :KM T0287 110 :FSKFDR 1gvjA 386 :YEKLSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=11978 # 2b59B.107.154 read from T0287.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=11979 # 1w4sA.107.113 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFS 1w4sA 1043 :KLCPE T0287 113 :FDR 1w4sA 1049 :FRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11981 # 1odmA.107.168 read from T0287.t2k.many.frag # found chain 1odmA in training set T0287 107 :NFLFSKFDR 1odmA 169 :NFFARHFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=11982 # 1u8xX.107.317 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 109 :L 1u8xX 297 :I T0287 113 :FDR 1u8xX 301 :CDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=11984 # 1srvA.107.114 read from T0287.t2k.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)N107 (1srvA)G306 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1srvA 307 :FKLENATL Number of specific fragments extracted= 1 number of extra gaps= 1 total=11985 # 2jdxA.107.205 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 2jdxA 244 :FVTTEF T0287 115 :R 2jdxA 251 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=11987 # 1e4cP.107.43 read from T0287.t2k.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)N107 (1e4cP)G44 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1e4cP 45 :IPYEKLTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=11988 # 1oqjA.107.78 read from T0287.t2k.many.frag # found chain 1oqjA in training set T0287 107 :NFLFSKFDR 1oqjA 164 :QIDFYQHDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=11989 # 1rqpA.107.171 read from T0287.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1rqpA 172 :GFPLSEV T0287 115 :R 1rqpA 180 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=11991 # 1w23A.107.319 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFL 1w23A 320 :GFV T0287 111 :S 1w23A 324 :L T0287 113 :FDR 1w23A 326 :GHR Number of specific fragments extracted= 3 number of extra gaps= 2 total=11994 # 1ox0A.108.109 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFSK 1ox0A 91 :LDVEA T0287 115 :RS 1ox0A 98 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=11996 # 1oygA.108.36 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 108 :FLFSKFDRS 1oygA 63 :YQVPEFDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=11997 # 1zvdA.108.243 read from T0287.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)K112 (1zvdA)T616 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFS 1zvdA 612 :HLLK T0287 113 :FDRS 1zvdA 617 :FDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=11999 # 1qw9A.108.13 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 108 :FLF 1qw9A 14 :FKI T0287 113 :FDRS 1qw9A 19 :IDKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12001 # 1yw4A.108.244 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 108 :FLFSKFDRS 1yw4A 245 :ANVPDLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=12002 # 1pkhA.108.16 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 108 :FLFS 1pkhA 17 :IIIK T0287 113 :FDRS 1pkhA 22 :FNKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12004 # 1tjvA.108.404 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 108 :FLFSKFDRS 1tjvA 405 :ITINKLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12005 # 1t4bA.108.212 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1t4bA 213 :LPVDNF T0287 115 :RS 1t4bA 220 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12007 # 1eokA.108.23 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 108 :FLFSKFDRS 1eokA 24 :FKLKDIPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12008 # 1y93A.108.42 read from T0287.t2k.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1y93A)G155 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1y93A 147 :LKFSKIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=12009 # 1qlmA.108.273 read from T0287.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFDRS 1qlmA 275 :DFYKIDPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12010 # 1sbxA.108.61 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 108 :FLFSKFDRS 1sbxA 148 :IYCSRCTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12011 # 1w4sA.108.114 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)D114 (1w4sA)R1050 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1w4sA 1044 :LCPENF T0287 115 :RS 1w4sA 1051 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12013 # 1up8A.108.172 read from T0287.t2k.many.frag # found chain 1up8A in template set T0287 108 :FLFSKFDRS 1up8A 172 :IEFSEFDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12014 # 1srvA.108.115 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 108 :FLFSKFDRS 1srvA 307 :FKLENATLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12015 # 1pe9A.108.286 read from T0287.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFS 1pe9A 287 :FTIA T0287 113 :FDRS 1pe9A 292 :LSAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12017 # 1pea.108.305 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 108 :FLFSKFDRS 1pea 306 :WRVEDVQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=12018 # 1e4cP.108.44 read from T0287.t2k.many.frag # found chain 1e4cP in training set T0287 108 :FLFSKFDRS 1e4cP 45 :IPYEKLTES Number of specific fragments extracted= 1 number of extra gaps= 0 total=12019 # 1uehA.108.166 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 108 :FLFSKFDRS 1uehA 167 :LQPDQIDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12020 # 1rqpA.108.172 read from T0287.t2k.many.frag # found chain 1rqpA in training set T0287 108 :FLFSKFDRS 1rqpA 173 :FPLSEVGRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12021 # 1yt8A.108.458 read from T0287.t2k.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFS 1yt8A 459 :FLLD T0287 114 :DRS 1yt8A 465 :TSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12023 # 2be1A.108.223 read from T0287.t2k.many.frag # found chain 2be1A in template set T0287 108 :FLFSKFDRS 2be1A 334 :LLASDLDFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12024 # 1n5uA.108.269 read from T0287.t2k.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F113 (1n5uA)L275 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSK 1n5uA 270 :SISSK T0287 114 :DRS 1n5uA 276 :KEC Number of specific fragments extracted= 2 number of extra gaps= 1 total=12026 # 1tt8A.108.103 read from T0287.t2k.many.frag # found chain 1tt8A in training set T0287 108 :FLFSKFDRS 1tt8A 104 :LALQKLGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=12027 # 1odmA.108.169 read from T0287.t2k.many.frag # found chain 1odmA in training set Warning: unaligning (T0287)D114 (1odmA)K176 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1odmA 170 :FFARHF T0287 115 :RS 1odmA 177 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12029 # 1bkrA.108.21 read from T0287.t2k.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1bkrA)F27 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFS 1bkrA 22 :VNIH T0287 114 :DRS 1bkrA 28 :TTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12031 # 2b59B.108.155 read from T0287.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12032 # 1hs6A.108.481 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1hs6A 481 :DDLNSF T0287 115 :RS 1hs6A 488 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12034 # 1my7A.108.23 read from T0287.t2k.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)F110 (1my7A)C216 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FL 1my7A 214 :LL T0287 111 :SKFDRS 1my7A 217 :DKVQKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12036 # 1u8xX.108.458 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 T0287 108 :FL 1u8xX 436 :DF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12038 # 1ox0A.109.110 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 109 :LFSK 1ox0A 92 :DVEA T0287 115 :RSI 1ox0A 98 :RDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12040 # 1oygA.109.37 read from T0287.t2k.many.frag # found chain 1oygA in training set T0287 109 :LFSKFDRSI 1oygA 64 :QVPEFDSST Number of specific fragments extracted= 1 number of extra gaps= 0 total=12041 # 1zvdA.109.244 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 109 :LFSKFDRSI 1zvdA 613 :LLKTFDEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12042 # 1qw9A.109.14 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 109 :LF 1qw9A 15 :KI T0287 113 :FDRSI 1qw9A 19 :IDKRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12044 # 1yw4A.109.245 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 109 :LFSKFDRSI 1yw4A 246 :NVPDLDEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12045 # 1pkhA.109.17 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1pkhA)F26 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFS 1pkhA 18 :IIK T0287 113 :FDRS 1pkhA 22 :FNKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=12047 # 1tjvA.109.405 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 109 :LFSKFDRSI 1tjvA 406 :TINKLSLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=12048 # 1t4bA.109.213 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 109 :LFSKFDRSI 1t4bA 214 :PVDNFGVPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12049 # 1srvA.109.116 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 109 :LFSKFDRSI 1srvA 308 :KLENATLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=12050 # 1qlmA.109.274 read from T0287.t2k.many.frag # found chain 1qlmA in template set T0287 109 :LFSKFDRSI 1qlmA 275 :DFYKIDPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12051 # 1eokA.109.24 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 109 :LFSKFDRSI 1eokA 25 :KLKDIPDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12052 # 1e4cP.109.45 read from T0287.t2k.many.frag # found chain 1e4cP in training set T0287 109 :LFSKFDRSI 1e4cP 46 :PYEKLTESH Number of specific fragments extracted= 1 number of extra gaps= 0 total=12053 # 1h2wA.109.316 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K112 (1h2wA)D320 because D (zeta) conformation "forbidden" or filtered. T0287 109 :LFS 1h2wA 317 :DFT T0287 113 :FDRSI 1h2wA 321 :PEESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12055 # 1sbxA.109.62 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 109 :LFSKFDRSI 1sbxA 149 :YCSRCTADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12056 # 1w4sA.109.115 read from T0287.t2k.many.frag # found chain 1w4sA in template set T0287 109 :LFSKFDRSI 1w4sA 1045 :CPENFRDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=12057 # 1y93A.109.43 read from T0287.t2k.many.frag # found chain 1y93A in template set T0287 109 :LFSKFDRSI 1y93A 148 :KFSKINTGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=12058 # 1tt8A.109.104 read from T0287.t2k.many.frag # found chain 1tt8A in training set T0287 109 :LFSKFDRSI 1tt8A 105 :ALQKLGKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12059 # 1pe9A.109.287 read from T0287.t2k.many.frag # found chain 1pe9A in training set T0287 109 :LFSKFDRSI 1pe9A 288 :TIANLSASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12060 # 1uehA.109.167 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 109 :LFSKFDRSI 1uehA 168 :QPDQIDEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=12061 # 1rqpA.109.173 read from T0287.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)K112 (1rqpA)E177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFS 1rqpA 174 :PLS T0287 113 :F 1rqpA 178 :V T0287 115 :RSI 1rqpA 180 :RPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12064 # 1kg0C.109.54 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L109 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1kg0C)G143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1kg0C)T145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1kg0C)I148 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1kg0C 141 :FY T0287 113 :F 1kg0C 144 :P T0287 115 :RS 1kg0C 146 :PD Number of specific fragments extracted= 3 number of extra gaps= 4 total=12067 # 1g9gA.109.98 read from T0287.t2k.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)K112 (1g9gA)R102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1g9gA)D104 because D (zeta) conformation "forbidden" or filtered. T0287 109 :LFS 1g9gA 99 :SMS T0287 113 :F 1g9gA 103 :Y T0287 115 :RSI 1g9gA 105 :ANK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12070 # 1up8A.109.173 read from T0287.t2k.many.frag # found chain 1up8A in template set T0287 109 :LFSKFDRSI 1up8A 173 :EFSEFDSPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12071 # 1hs6A.109.482 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 1hs6A 482 :DLNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12073 # 1pea.109.306 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 109 :LFSKFDRSI 1pea 307 :RVEDVQRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12074 # 1ut7A.109.52 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D50 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RS 1ut7A 56 :PW Number of specific fragments extracted= 2 number of extra gaps= 3 total=12076 # 1qxmA.109.188 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)F113 (1qxmA)F179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSK 1qxmA 175 :LWQW T0287 115 :RSI 1qxmA 181 :SSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12078 # 2a3nA.109.260 read from T0287.t2k.many.frag # found chain 2a3nA in template set T0287 109 :LFSKFDRSI 2a3nA 249 :ALELLEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12079 # 1bkrA.109.22 read from T0287.t2k.many.frag # found chain 1bkrA in training set T0287 109 :LFSKFDRSI 1bkrA 23 :NIHNFTTSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=12080 # 1u8xX.109.459 read from T0287.t2k.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 Warning: unaligning (T0287)I117 because last residue in template chain is (1u8xX)P445 T0287 109 :L 1u8xX 437 :F T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12082 # 1ox0A.110.111 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 110 :FSK 1ox0A 93 :VEA T0287 115 :RSIL 1ox0A 98 :RDRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12084 # 1oygA.110.38 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)I117 (1oygA)T72 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1oygA 65 :VPEFDSS T0287 118 :L 1oygA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12086 # 1qw9A.110.15 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 110 :F 1qw9A 16 :I T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12088 # 1zvdA.110.245 read from T0287.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 110 :FSKF 1zvdA 614 :LKTF T0287 115 :RSIL 1zvdA 619 :EKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12090 # 1yw4A.110.246 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FS 1yw4A 247 :VP T0287 113 :FDRSIL 1yw4A 250 :LDEDKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12092 # 1t4bA.110.214 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)S116 (1t4bA)P221 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKFDR 1t4bA 215 :VDNFGV T0287 117 :IL 1t4bA 222 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12094 # 1srvA.110.117 read from T0287.t2k.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)I117 (1srvA)M316 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1srvA 309 :LENATLS T0287 118 :L 1srvA 317 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12096 # 1h2wA.110.317 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)D114 (1h2wA)E322 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKF 1h2wA 318 :FTDP T0287 115 :RSIL 1h2wA 323 :ESKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=12098 # 1pkhA.110.18 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1pkhA)D25 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1pkhA 19 :IK T0287 113 :F 1pkhA 22 :F T0287 115 :R 1pkhA 24 :K T0287 117 :IL 1pkhA 26 :FV Number of specific fragments extracted= 4 number of extra gaps= 3 total=12102 # 1tt8A.110.105 read from T0287.t2k.many.frag # found chain 1tt8A in training set T0287 110 :FSKFDRSIL 1tt8A 106 :LQKLGKTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12103 # 1qlmA.110.275 read from T0287.t2k.many.frag # found chain 1qlmA in template set T0287 110 :FSKFDRSIL 1qlmA 276 :FYKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12104 # 1tjvA.110.406 read from T0287.t2k.many.frag # found chain 1tjvA in template set T0287 110 :FSKFDRSIL 1tjvA 407 :INKLSLEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12105 # 1w4sA.110.116 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1w4sA)D1053 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1w4sA 1046 :PE T0287 113 :FDRS 1w4sA 1049 :FRDE T0287 118 :L 1w4sA 1054 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=12108 # 1e4cP.110.46 read from T0287.t2k.many.frag # found chain 1e4cP in training set T0287 110 :FSKFDRSIL 1e4cP 47 :YEKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12109 # 1kg0C.110.55 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 T0287 110 :FSKFDRSI 1kg0C 141 :FYGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12110 # 1eokA.110.25 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 110 :FSKFDRSIL 1eokA 26 :LKDIPDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12111 # 1xruA.110.41 read from T0287.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)K112 (1xruA)H41 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1xruA 39 :YS T0287 113 :FDRSIL 1xruA 42 :IDRIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12113 # 1pea.110.307 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 110 :FSKFDRSIL 1pea 308 :VEDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=12114 # 1qxmA.110.189 read from T0287.t2k.many.frag # found chain 1qxmA in training set T0287 110 :FSKFDRSIL 1qxmA 176 :WQWFDSSRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12115 # 1l8bA.110.114 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 110 :FSKFDRSIL 1l8bA 142 :FDDYSDDVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=12116 # 1rqpA.110.174 read from T0287.t2k.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKF 1rqpA 175 :LSEV T0287 115 :RSIL 1rqpA 180 :RPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12118 # 1ut7A.110.53 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RS 1ut7A 56 :PW T0287 118 :L 1ut7A 59 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=12121 # 1g4mA.110.306 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 110 :FS 1g4mA 307 :RE T0287 113 :FDRSIL 1g4mA 310 :ANREIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12123 # 1vefA.110.361 read from T0287.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FSKF 1vefA 362 :ALQA T0287 115 :RSIL 1vefA 367 :PTVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12125 # 1sbxA.110.63 read from T0287.t2k.many.frag # found chain 1sbxA in training set T0287 110 :FSKFDRSIL 1sbxA 150 :CSRCTADQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12126 # 1hs6A.110.483 read from T0287.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)K492 T0287 110 :FSKF 1hs6A 483 :LNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=12128 # 1uehA.110.168 read from T0287.t2k.many.frag # found chain 1uehA in training set T0287 110 :FSKFDRSIL 1uehA 169 :PDQIDEEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=12129 # 1w23A.110.322 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FS 1w23A 323 :GL T0287 113 :FDRSIL 1w23A 326 :GHRSVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12131 # 1g9gA.110.99 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 110 :FSKFDRSIL 1g9gA 100 :MSRYDANKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12132 # 1nkr.110.66 read from T0287.t2k.many.frag # found chain 1nkr in training set T0287 110 :FSKFDRSIL 1nkr 66 :ISRMTQDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12133 # 1ox0A.111.112 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 111 :SK 1ox0A 94 :EA T0287 115 :RSILG 1ox0A 98 :RDRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12135 # 1qw9A.111.16 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12136 # 1oygA.111.39 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 T0287 111 :SKFDRSIL 1oygA 66 :PEFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12137 # 1yw4A.111.247 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :S 1yw4A 248 :P T0287 113 :FDRSILG 1yw4A 250 :LDEDKLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12139 # 1zvdA.111.246 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 111 :SKFDRSILG 1zvdA 615 :KTFDEKELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12140 # 1h2wA.111.318 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)S111 (1h2wA)T319 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KFDRSILG 1h2wA 320 :DPEESKWK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12141 # 1t4bA.111.215 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F113 (1t4bA)F218 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SK 1t4bA 216 :DN T0287 114 :DRSILG 1t4bA 219 :GVPLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12143 # 1srvA.111.118 read from T0287.t2k.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)I117 (1srvA)M316 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDRS 1srvA 310 :ENATLS T0287 118 :LG 1srvA 317 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12145 # 1tt8A.111.106 read from T0287.t2k.many.frag # found chain 1tt8A in training set T0287 111 :SKFDRSILG 1tt8A 107 :QKLGKTPLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12146 # 1xruA.111.42 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 111 :SKFDRSILG 1xruA 40 :SHIDRIIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12147 # 1g4mA.111.307 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 111 :S 1g4mA 308 :E T0287 113 :FDRSILG 1g4mA 310 :ANREILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12149 # 1w4sA.111.117 read from T0287.t2k.many.frag # found chain 1w4sA in template set T0287 111 :SKFDRSILG 1w4sA 1047 :ENFRDEDVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=12150 # 1kg0C.111.56 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)I117 (1kg0C)I148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 111 :SKFDRS 1kg0C 142 :YGPTPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=12151 # 1vefA.111.362 read from T0287.t2k.many.frag # found chain 1vefA in template set T0287 111 :SKFDRSILG 1vefA 363 :LQAGPTVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12152 # 1l8bA.111.115 read from T0287.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)S111 (1l8bA)D143 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KFDRSILG 1l8bA 144 :DYSDDVCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12153 # 1qxmA.111.190 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)F113 (1qxmA)F179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1qxmA)K185 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SK 1qxmA 177 :QW T0287 114 :DRSIL 1qxmA 180 :DSSRQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=12155 # 1ut7A.111.54 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)S111 (1ut7A)Y52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 112 :K 1ut7A 53 :K T0287 115 :RSILG 1ut7A 56 :PWVLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=12157 # 1tjvA.111.407 read from T0287.t2k.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKF 1tjvA 408 :NKL T0287 115 :RSILG 1tjvA 412 :LEDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12159 # 1w23A.111.323 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKF 1w23A 324 :LNG T0287 115 :RSI 1w23A 328 :RSV T0287 119 :G 1w23A 332 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=12162 # 1pkhA.111.19 read from T0287.t2k.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 111 :S 1pkhA 20 :K T0287 113 :FDRSILG 1pkhA 22 :FNKDFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12164 # 1qlmA.111.276 read from T0287.t2k.many.frag # found chain 1qlmA in template set T0287 111 :SKFDRSILG 1qlmA 277 :YKIDPGVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12165 # 1e4cP.111.47 read from T0287.t2k.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)D114 (1e4cP)T51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1e4cP)V56 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKF 1e4cP 48 :EKL T0287 115 :RSIL 1e4cP 52 :ESHI Number of specific fragments extracted= 2 number of extra gaps= 2 total=12167 # 1nkr.111.67 read from T0287.t2k.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)K112 (1nkr)R68 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1nkr)G75 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :S 1nkr 67 :S T0287 113 :FDRSIL 1nkr 69 :MTQDLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=12169 # 2a3nA.111.262 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2a3nA)D256 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKF 2a3nA 251 :ELL T0287 115 :R 2a3nA 255 :K T0287 117 :ILG 2a3nA 257 :VPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12172 # 1g9gA.111.100 read from T0287.t2k.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1g9gA 101 :SRYDANKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=12173 # 1eokA.111.26 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKFDR 1eokA 27 :KDIPD T0287 117 :ILG 1eokA 33 :VDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=12175 # 1ogoX.111.139 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDR 1ogoX 140 :SQSDD T0287 117 :IL 1ogoX 146 :GI Number of specific fragments extracted= 2 number of extra gaps= 2 total=12177 # 1ig0A.111.178 read from T0287.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0287)G119 (1ig0A)L187 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1ig0A 179 :SKVTPISL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12178 # 1pe9A.111.289 read from T0287.t2k.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)S111 (1pe9A)A290 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KFDRSILG 1pe9A 291 :NLSASKAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=12179 # 1pea.111.308 read from T0287.t2k.many.frag # found chain 1pea in template set T0287 111 :SKFDRSILG 1pea 309 :EDVQRHLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12180 # 1ox0A.112.113 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 112 :K 1ox0A 95 :A T0287 115 :RSILGI 1ox0A 98 :RDRFGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12182 # 1qw9A.112.17 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 2 total=12183 # 1yw4A.112.248 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1yw4A 250 :LDEDKL T0287 120 :I 1yw4A 257 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=12185 # 1h2wA.112.319 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K112 (1h2wA)D320 because D (zeta) conformation "forbidden" or filtered. T0287 113 :FDRSILGI 1h2wA 321 :PEESKWKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12186 # 1zvdA.112.247 read from T0287.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1zvdA 616 :TF T0287 115 :RSILGI 1zvdA 619 :EKELEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12188 # 1xruA.112.43 read from T0287.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. T0287 112 :KFD 1xruA 41 :HID T0287 116 :SILGI 1xruA 45 :IIVGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12190 # 1oygA.112.40 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)N75 T0287 112 :KFDRSIL 1oygA 67 :EFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12191 # 1t4bA.112.216 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 112 :KFDRSILGI 1t4bA 217 :NFGVPLAGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12192 # 1g4mA.112.308 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)D114 (1g4mA)N311 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1g4mA)I314 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KF 1g4mA 309 :GA T0287 115 :RS 1g4mA 312 :RE T0287 118 :LGI 1g4mA 315 :LGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=12195 # 1vefA.112.363 read from T0287.t2k.many.frag # found chain 1vefA in template set T0287 112 :KFDRSILGI 1vefA 364 :QAGPTVIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12196 # 1srvA.112.119 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 112 :KFDRSILGI 1srvA 311 :NATLSMLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12197 # 1tt8A.112.107 read from T0287.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KF 1tt8A 108 :KL T0287 115 :RSILGI 1tt8A 111 :KTPLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12199 # 1l8bA.112.116 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 112 :KFDRSILGI 1l8bA 144 :DYSDDVCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12200 # 3cla.112.132 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)D114 (3cla)P141 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KF 3cla 139 :VT T0287 115 :RSILGI 3cla 142 :ENHLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12202 # 1qxmA.112.191 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)K112 (1qxmA)W178 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDRSILGI 1qxmA 179 :FDSSRQKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=12203 # 1chd.112.123 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KF 1chd 270 :HA T0287 115 :RSILGI 1chd 273 :RNAVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12205 # 1ogoX.112.140 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1ogoX 141 :QSDDGGI T0287 120 :I 1ogoX 149 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12207 # 1kg0C.112.57 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)K112 (1kg0C)G143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :FDRSI 1kg0C 144 :PTPDI T0287 120 :I 1kg0C 151 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=12209 # 1w4sA.112.118 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)I117 (1w4sA)D1053 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KFDRS 1w4sA 1048 :NFRDE T0287 118 :LGI 1w4sA 1054 :VYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12211 # 2fckA.112.128 read from T0287.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 112 :KFDRSIL 2fckA 126 :RLELTRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12212 # 1w23A.112.324 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1w23A 326 :G T0287 115 :RSI 1w23A 328 :RSV T0287 119 :GI 1w23A 332 :GC Number of specific fragments extracted= 3 number of extra gaps= 3 total=12215 # 2a3nA.112.263 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)G119 (2a3nA)L259 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 2a3nA 252 :LLEKDVP T0287 120 :I 2a3nA 260 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12217 # 1qs1A.112.198 read from T0287.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)D114 (1qs1A)E201 because N (gamma') conformation "forbidden" or filtered. T0287 112 :KF 1qs1A 199 :SK T0287 115 :RSILGI 1qs1A 202 :RVILKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12219 # 2be1A.112.227 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 112 :KFDRS 2be1A 338 :DLDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=12220 # 1wl8A.112.69 read from T0287.t2k.many.frag # found chain 1wl8A in template set Warning: unaligning (T0287)D114 (1wl8A)N72 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1wl8A 70 :EF T0287 115 :RSILGI 1wl8A 73 :VPILGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12222 # 1ut7A.112.55 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 112 :K 1ut7A 53 :K T0287 115 :RSILGI 1ut7A 56 :PWVLPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12224 # 1nkr.112.68 read from T0287.t2k.many.frag # found chain 1nkr in training set T0287 112 :KFDRSILGI 1nkr 68 :RMTQDLAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=12225 # 1wd3A.112.26 read from T0287.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0287)L118 (1wd3A)Y50 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KFDRSI 1wd3A 44 :SFSGAL T0287 119 :GI 1wd3A 51 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12227 # 1as4B.112.7 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 112 :KFDRSILGI 1as4B 365 :RFNRPFLMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12228 # 2bw3A.112.110 read from T0287.t2k.many.frag # found chain 2bw3A in template set Warning: unaligning (T0287)D114 (2bw3A)K188 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 2bw3A 186 :YI T0287 115 :RSILGI 2bw3A 189 :RNFLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12230 # 1ox0A.113.114 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 115 :RSILGIF 1ox0A 98 :RDRFGVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12231 # 1qw9A.113.18 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12232 # 1yw4A.113.249 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 113 :FDRSILGIF 1yw4A 250 :LDEDKLPLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12233 # 1h2wA.113.320 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)D114 (1h2wA)E322 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :F 1h2wA 321 :P T0287 115 :RSIL 1h2wA 323 :ESKW T0287 120 :IF 1h2wA 328 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12236 # 3cla.113.133 read from T0287.t2k.many.frag # found chain 3cla in training set T0287 113 :FDRSILGIF 3cla 140 :TPENHLNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12237 # 1seiA.113.53 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)F113 (1seiA)N54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. T0287 115 :RSILGIF 1seiA 56 :QGILRIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12238 # 1ogoX.113.141 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDR 1ogoX 142 :SDD T0287 117 :IL 1ogoX 146 :GI T0287 120 :IF 1ogoX 149 :IR Number of specific fragments extracted= 3 number of extra gaps= 2 total=12241 # 1chd.113.124 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1chd 271 :AGRNAV T0287 120 :IF 1chd 278 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12243 # 1g4mA.113.309 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)D114 (1g4mA)N311 because N (gamma') conformation "forbidden" or filtered. T0287 113 :F 1g4mA 310 :A T0287 115 :RSILGIF 1g4mA 312 :REILGII Number of specific fragments extracted= 2 number of extra gaps= 1 total=12245 # 1vefA.113.364 read from T0287.t2k.many.frag # found chain 1vefA in template set T0287 113 :FDRSILGIF 1vefA 365 :AGPTVIRFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12246 # 1xruA.113.44 read from T0287.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :F 1xruA 42 :I T0287 115 :RSILGIF 1xruA 44 :RIIVGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12248 # 1qxmA.113.192 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)F113 (1qxmA)F179 because G (3-10) conformation "forbidden" or filtered. T0287 114 :DRSILGIF 1qxmA 180 :DSSRQKWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12249 # 1l8bA.113.117 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 113 :FDRSILGIF 1l8bA 145 :YSDDVCGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12250 # 1srvA.113.120 read from T0287.t2k.many.frag # found chain 1srvA in template set T0287 113 :FDRSILGIF 1srvA 312 :ATLSMLGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12251 # 1t4bA.113.217 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)S116 (1t4bA)P221 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDR 1t4bA 218 :FGV T0287 117 :ILGIF 1t4bA 222 :LAGSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12253 # 1crzA.113.225 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :FD 1crzA 232 :PD T0287 116 :SIL 1crzA 235 :SKL T0287 121 :F 1crzA 240 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=12256 # 2fckA.113.129 read from T0287.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 113 :FDRSIL 2fckA 127 :LELTRL T0287 121 :F 2fckA 135 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=12258 # 1kg0C.113.58 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)D114 (1kg0C)T145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :F 1kg0C 144 :P T0287 115 :RSI 1kg0C 146 :PDI T0287 120 :IF 1kg0C 151 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12261 # 1tt8A.113.108 read from T0287.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1tt8A 109 :L T0287 115 :RSILGIF 1tt8A 111 :KTPLGRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12263 # 2a3nA.113.264 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)G119 (2a3nA)L259 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 2a3nA 253 :LEKDVP T0287 120 :IF 2a3nA 260 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12265 # 1zvdA.113.248 read from T0287.t2k.many.frag # found chain 1zvdA in template set T0287 113 :FDRSILGIF 1zvdA 617 :FDEKELELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12266 # 1as4B.113.8 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1as4B 366 :FNRPFL T0287 120 :IF 1as4B 373 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=12268 # 1w23A.113.325 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w23A)G332 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :FDRSI 1w23A 326 :GHRSV T0287 120 :IF 1w23A 333 :CR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12270 # 2be1A.113.228 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 113 :FDRS 2be1A 339 :LDFR T0287 121 :F 2be1A 347 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=12272 # 1u7iA.113.46 read from T0287.t2k.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :FD 1u7iA 45 :PE T0287 116 :SILGIF 1u7iA 48 :SVLKAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12274 # 1qs1A.113.199 read from T0287.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)R115 (1qs1A)R202 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 113 :FD 1qs1A 200 :KE T0287 116 :SIL 1qs1A 203 :VIL T0287 120 :IF 1qs1A 207 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=12277 # 1n7zA.113.80 read from T0287.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0287)I117 (1n7zA)M85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1n7zA)D87 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRS 1n7zA 81 :VLPS T0287 118 :L 1n7zA 86 :L T0287 120 :IF 1n7zA 88 :AV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12280 # 1w4sA.113.119 read from T0287.t2k.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)D114 (1w4sA)R1050 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :F 1w4sA 1049 :F T0287 115 :RSIL 1w4sA 1051 :DEDV T0287 120 :IF 1w4sA 1056 :VC Number of specific fragments extracted= 3 number of extra gaps= 2 total=12283 # 1lm8V.113.26 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)R115 (1lm8V)R82 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FD 1lm8V 80 :SP T0287 116 :SILGIF 1lm8V 83 :VVLPVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=12285 # 1w66A.113.127 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1w66A)V127 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIF 1w66A 130 :RSGVW Number of specific fragments extracted= 2 number of extra gaps= 2 total=12287 # 1h2wA.114.321 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 114 :DRSILGIFL 1h2wA 322 :EESKWKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12288 # 1ox0A.114.115 read from T0287.t2k.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 115 :RSILGIFL 1ox0A 98 :RDRFGVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12289 # 1qw9A.114.19 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 114 :DRSILG 1qw9A 20 :DKRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12291 # 1seiA.114.54 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12292 # 1w66A.114.128 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIFL 1w66A 130 :RSGVWL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12294 # 1ogoX.114.142 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :DR 1ogoX 143 :DD T0287 117 :ILGIFL 1ogoX 146 :GIVIRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12296 # 3cla.114.134 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)D114 (3cla)P141 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 3cla 142 :ENHLNISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12297 # 1yw4A.114.250 read from T0287.t2k.many.frag # found chain 1yw4A in template set T0287 114 :DRSILGIFL 1yw4A 251 :DEDKLPLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12298 # 1chd.114.125 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1chd)N274 because G (3-10) conformation "forbidden" or filtered. T0287 115 :R 1chd 273 :R T0287 117 :ILGIFL 1chd 275 :AVGVIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12300 # 1crzA.114.226 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :D 1crzA 233 :D T0287 116 :SILG 1crzA 235 :SKLA T0287 121 :FL 1crzA 240 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=12303 # 1g4mA.114.310 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)D114 (1g4mA)N311 because N (gamma') conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1g4mA 312 :REILGIIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12304 # 1l8bA.114.118 read from T0287.t2k.many.frag # found chain 1l8bA in training set T0287 114 :DRSILGIFL 1l8bA 146 :SDDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12305 # 1t4bA.114.218 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 114 :DRSILGIFL 1t4bA 219 :GVPLAGSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12306 # 1xruA.114.45 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 114 :DRSILGIFL 1xruA 43 :DRIIVGGIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=12307 # 1vefA.114.365 read from T0287.t2k.many.frag # found chain 1vefA in template set T0287 114 :DRSILGIFL 1vefA 366 :GPTVIRFLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12308 # 1wurA.114.80 read from T0287.t2k.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 114 :DRSI 1wurA 81 :EEVV T0287 119 :GIFL 1wurA 86 :GAVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12310 # 1qxmA.114.193 read from T0287.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)R115 (1qxmA)S181 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :D 1qxmA 180 :D T0287 116 :SILGIFL 1qxmA 182 :SRQKWII Number of specific fragments extracted= 2 number of extra gaps= 1 total=12312 # 2be1A.114.129 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 T0287 114 :DRSILGIF 2be1A 240 :NGEIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12313 # 1kg0C.114.59 read from T0287.t2k.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)D114 (1kg0C)T145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 115 :RSI 1kg0C 146 :PDI T0287 120 :IFL 1kg0C 151 :VVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=12315 # 2asbA.114.22 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)S116 (2asbA)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DR 2asbA 127 :AR T0287 117 :ILGIF 2asbA 130 :LVVVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=12317 # 1u7iA.114.47 read from T0287.t2k.many.frag # found chain 1u7iA in training set T0287 114 :DRSILGIFL 1u7iA 46 :EGSVLKALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12318 # 1as4B.114.9 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 114 :DRSILGIFL 1as4B 367 :NRPFLMIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12319 # 1oewA.114.243 read from T0287.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1oewA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSI 1oewA 244 :SSSV T0287 120 :IFL 1oewA 250 :YVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12321 # 1w23A.114.326 read from T0287.t2k.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 114 :DRSI 1w23A 327 :HRSV T0287 119 :GIFL 1w23A 332 :GCRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12323 # 2a3nA.114.265 read from T0287.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILGIFL 2a3nA 255 :KDVPLILV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12324 # 2be1A.114.229 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 114 :DR 2be1A 340 :DF T0287 121 :FL 2be1A 347 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12326 # 1lm8V.114.27 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DRSIL 1lm8V 81 :PRVVL T0287 120 :IFL 1lm8V 87 :VWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12328 # 2f6kA.114.114 read from T0287.t2k.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2f6kA)G120 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DR 2f6kA 115 :QD T0287 117 :IL 2f6kA 118 :AL T0287 120 :IFL 2f6kA 121 :VTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12331 # 1my7A.114.29 read from T0287.t2k.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)G119 (1my7A)E225 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSIL 1my7A 220 :QKEDI T0287 120 :IFL 1my7A 226 :VYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12333 # 1n7zA.114.81 read from T0287.t2k.many.frag # found chain 1n7zA in template set T0287 114 :DRSILGIFL 1n7zA 82 :LPSMLDAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12334 # 1h2wA.115.322 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 115 :RSILGIFLP 1h2wA 323 :ESKWKVLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12335 # 1w66A.115.129 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIFLP 1w66A 130 :RSGVWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12337 # 1qw9A.115.20 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 T0287 115 :RSIL 1qw9A 21 :KRIY T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=12339 # 1seiA.115.55 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12340 # 1ogoX.115.143 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1ogoX)V151 because D (zeta) conformation "forbidden" or filtered. T0287 115 :R 1ogoX 144 :D T0287 117 :ILGIF 1ogoX 146 :GIVIR T0287 123 :P 1ogoX 152 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=12343 # 3cla.115.135 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 3cla 142 :ENHLNISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12344 # 1t4bA.115.219 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 115 :RSILGIFLP 1t4bA 220 :VPLAGSLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12345 # 1crzA.115.227 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 T0287 115 :RSILGIFL 1crzA 234 :GSKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12346 # 1ox0A.115.116 read from T0287.t2k.many.frag # found chain 1ox0A in training set T0287 115 :RSILGIFLP 1ox0A 98 :RDRFGVIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12347 # 1oewA.115.244 read from T0287.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILGIF 1oewA 245 :SSVGGYV T0287 123 :P 1oewA 253 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=12349 # 1wurA.115.81 read from T0287.t2k.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 115 :RSI 1wurA 82 :EVV T0287 119 :GIFLP 1wurA 86 :GAVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12351 # 1chd.115.126 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S116 (1chd)N274 because G (3-10) conformation "forbidden" or filtered. T0287 115 :R 1chd 273 :R T0287 117 :ILGIFLP 1chd 275 :AVGVILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12353 # 1t1uA.115.165 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)R167 Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLP 1t1uA 172 :YRLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=12355 # 2be1A.115.130 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 T0287 115 :RSILGIF 2be1A 241 :GEIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12356 # 1g4mA.115.311 read from T0287.t2k.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)P123 (1g4mA)S320 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1g4mA 312 :REILGIIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12357 # 1yw4A.115.251 read from T0287.t2k.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1yw4A 252 :EDKL T0287 120 :IFLP 1yw4A 257 :LFRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12359 # 2asbA.115.23 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILGIF 2asbA 128 :RGLVVVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=12360 # 1as4B.115.10 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :R 1as4B 368 :R T0287 117 :ILGIFLP 1as4B 370 :FLMIIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12362 # 1jo0A.115.78 read from T0287.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)R115 (1jo0A)G80 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1jo0A 81 :HIL T0287 120 :IFLP 1jo0A 85 :LYRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=12364 # 1wdaA.115.582 read from T0287.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)G119 (1wdaA)E580 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 115 :RSIL 1wdaA 576 :FSKA T0287 120 :I 1wdaA 581 :A T0287 123 :P 1wdaA 584 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=12367 # 1l8bA.115.119 read from T0287.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)P123 (1l8bA)N155 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1l8bA 147 :DDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12368 # 1l1dA.115.43 read from T0287.t2k.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)R115 (1l1dA)L414 because P (beta_P) conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1l1dA 415 :FKPGIYVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=12369 # 1kaeA.115.123 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 115 :RSILGIFLP 1kaeA 124 :VASVGLYIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12370 # 1xruA.115.46 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 115 :RSILGIFLP 1xruA 44 :RIIVGGIMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12371 # 1t61A.115.157 read from T0287.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. T0287 115 :RSILG 1t61A 158 :LASPG T0287 121 :FLP 1t61A 164 :CLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12373 # 2bzvA.115.66 read from T0287.t2k.many.frag # found chain 2bzvA in template set T0287 115 :RSILGIFLP 2bzvA 281 :DNALSLKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12374 # 1lm8V.115.28 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1lm8V 82 :RVVL T0287 120 :IFLP 1lm8V 87 :VWLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12376 # 2be1A.115.230 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 115 :RS 2be1A 341 :FR T0287 121 :FLP 2be1A 347 :VSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12378 # 1vefA.115.366 read from T0287.t2k.many.frag # found chain 1vefA in template set T0287 115 :RSILGIFLP 1vefA 367 :PTVIRFLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12379 # 2f6kA.115.115 read from T0287.t2k.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. T0287 115 :R 2f6kA 116 :D T0287 117 :ILGIFLP 2f6kA 118 :ALGVTVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12381 # 1h2wA.116.323 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 116 :SILGIFLPF 1h2wA 324 :SKWKVLVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12382 # 1w66A.116.130 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 116 :SIL 1w66A 129 :GRS T0287 120 :IFLPF 1w66A 133 :VWLPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12384 # 1seiA.116.56 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SILGIFL 1seiA 57 :GILRIFL T0287 124 :F 1seiA 65 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=12386 # 1qw9A.116.21 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 116 :SIL 1qw9A 22 :RIY T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=12388 # 1ogoX.116.144 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1ogoX)V151 because D (zeta) conformation "forbidden" or filtered. T0287 117 :IL 1ogoX 146 :GI T0287 120 :IF 1ogoX 149 :IR T0287 123 :PF 1ogoX 152 :PA Number of specific fragments extracted= 3 number of extra gaps= 3 total=12391 # 1t4bA.116.220 read from T0287.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)S116 (1t4bA)P221 because P (beta_P) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1t4bA 222 :LAGSLIPW Number of specific fragments extracted= 1 number of extra gaps= 1 total=12392 # 1wurA.116.82 read from T0287.t2k.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 116 :SI 1wurA 83 :VV T0287 119 :GIFLPF 1wurA 86 :GAVFPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12394 # 3cla.116.136 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SILGIFL 3cla 143 :NHLNISA T0287 124 :F 3cla 151 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=12396 # 1t1uA.116.166 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLPF 1t1uA 170 :SSYRLPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12397 # 1crzA.116.228 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 T0287 116 :SIL 1crzA 235 :SKL T0287 120 :IFL 1crzA 239 :FAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12399 # 1as4B.116.11 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1as4B 370 :FLMIIVPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=12400 # 1chd.116.127 read from T0287.t2k.many.frag # found chain 1chd in training set T0287 116 :SILGIFLPF 1chd 274 :NAVGVILTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12401 # 1oewA.116.245 read from T0287.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SI 1oewA 246 :SV T0287 119 :GIF 1oewA 249 :GYV T0287 123 :PF 1oewA 253 :PC Number of specific fragments extracted= 3 number of extra gaps= 2 total=12404 # 1kaeA.116.124 read from T0287.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1kaeA)G133 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 1kaeA 125 :ASV T0287 120 :IFLP 1kaeA 129 :LYIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=12406 # 2be1A.116.131 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 T0287 116 :SILGIF 2be1A 242 :EIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12407 # 1jo0A.116.79 read from T0287.t2k.many.frag # found chain 1jo0A in training set T0287 116 :SILGIFLPF 1jo0A 81 :HILVLYRPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12408 # 3eipA.116.52 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 116 :SILGIFLPF 3eipA 53 :EWVPLLQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=12409 # 1xruA.116.47 read from T0287.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 1xruA 45 :IIV T0287 120 :IFLPF 1xruA 49 :GIMPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12411 # 1wdaA.116.583 read from T0287.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :PF 1wdaA 584 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12413 # 1g9gA.116.105 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 116 :SILGIFLPF 1g9gA 106 :NKPATYAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12414 # 2be1A.116.231 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 116 :S 2be1A 342 :R T0287 121 :FLPF 2be1A 347 :VSPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12416 # 1lm8V.116.29 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 116 :SIL 1lm8V 83 :VVL T0287 120 :IFLPF 1lm8V 87 :VWLNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12418 # 1t61A.116.158 read from T0287.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. T0287 116 :SILG 1t61A 159 :ASPG T0287 121 :FLPF 1t61A 164 :CLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12420 # 1cv8.116.134 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 116 :SIL 1cv8 135 :EVI T0287 120 :IFL 1cv8 139 :IWN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12422 # 2bjqA.116.226 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)G230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 2bjqA 227 :PVF T0287 120 :IF 2bjqA 231 :RA T0287 123 :PF 2bjqA 234 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=12425 # 2bzvA.116.67 read from T0287.t2k.many.frag # found chain 2bzvA in template set T0287 116 :SILGIFLPF 2bzvA 282 :NALSLKLPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12426 # 1l1dA.116.44 read from T0287.t2k.many.frag # found chain 1l1dA in template set T0287 116 :SILGIFLPF 1l1dA 415 :FKPGIYVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12427 # 1ewfA.116.200 read from T0287.t2k.many.frag # found chain 1ewfA in training set T0287 116 :SILGIFLPF 1ewfA 201 :SVAGINYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12428 # 1repC.116.133 read from T0287.t2k.many.frag # found chain 1repC in template set T0287 116 :SILGIFLPF 1repC 134 :YLIPFFIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12429 # 1t62A.116.68 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 116 :SILGIFLPF 1t62A 1069 :GQYDIILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12430 # 1h2wA.117.324 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 117 :ILGIFLPFF 1h2wA 325 :KWKVLVPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=12431 # 1w66A.117.131 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F124 (1w66A)G137 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILGIFLP 1w66A 130 :RSGVWLP T0287 125 :F 1w66A 138 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=12433 # 1seiA.117.57 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :ILGIFL 1seiA 58 :ILRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12435 # 1ogoX.117.145 read from T0287.t2k.many.frag # found chain 1ogoX in training set T0287 117 :ILGIFLPFF 1ogoX 146 :GIVIRVPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12436 # 1qw9A.117.22 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 117 :ILG 1qw9A 23 :IYG T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=12439 # 1t1uA.117.167 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLPFF 1t1uA 170 :SSYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=12440 # 1as4B.117.12 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 117 :ILGIFLPFF 1as4B 370 :FLMIIVPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12441 # 3cla.117.137 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 117 :ILGIFL 3cla 144 :HLNISA T0287 124 :FF 3cla 151 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=12443 # 1crzA.117.229 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 117 :IL 1crzA 236 :KL T0287 120 :IFL 1crzA 239 :FAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12445 # 1kaeA.117.125 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 117 :ILGIFLPFF 1kaeA 126 :SVGLYIPGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12446 # 3eipA.117.53 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 117 :ILGIFLPFF 3eipA 54 :WVPLLQPYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12447 # 1jo0A.117.80 read from T0287.t2k.many.frag # found chain 1jo0A in training set T0287 117 :ILGIFLPFF 1jo0A 82 :ILVLYRPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12448 # 1chd.117.128 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1chd 275 :AV T0287 120 :IFLPFF 1chd 278 :VILTGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=12450 # 1t4bA.117.221 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 117 :ILGIFLPFF 1t4bA 222 :LAGSLIPWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12451 # 2be1A.117.132 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 T0287 117 :ILGIF 2be1A 243 :IISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12452 # 1cv8.117.135 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 117 :IL 1cv8 136 :VI T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=12455 # 1g9gA.117.106 read from T0287.t2k.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1g9gA 107 :KP T0287 120 :IFLPFF 1g9gA 110 :TYAPEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12457 # 1oewA.117.246 read from T0287.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1oewA)G249 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :I 1oewA 247 :V T0287 120 :IFLPFF 1oewA 250 :YVFPCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12459 # 1f8eA.117.74 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 117 :I 1f8eA 156 :R T0287 120 :IF 1f8eA 159 :IS T0287 123 :PF 1f8eA 162 :PL Number of specific fragments extracted= 3 number of extra gaps= 3 total=12462 # 1t61A.117.159 read from T0287.t2k.many.frag # found chain 1t61A in training set T0287 117 :ILGIFLPFF 1t61A 160 :SPGSCLEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12463 # 1wurA.117.83 read from T0287.t2k.many.frag # found chain 1wurA in template set T0287 117 :ILGIFLPFF 1wurA 84 :VGGAVFPAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12464 # 1wdaA.117.584 read from T0287.t2k.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 117 :ILGI 1wdaA 578 :KAEA T0287 123 :PFF 1wdaA 584 :PNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=12466 # 2bjqA.117.227 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILGIF 2bjqA 228 :VFGRA T0287 123 :PFF 2bjqA 234 :PDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12468 # 2be1A.117.232 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFF 2be1A 347 :VSPTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12469 # 1t62A.117.69 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 117 :ILGIFLPFF 1t62A 1070 :QYDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12470 # 1xruA.117.48 read from T0287.t2k.many.frag # found chain 1xruA in template set T0287 117 :ILGIFLPFF 1xruA 46 :IVGGIMPIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=12471 # 1lm8V.117.30 read from T0287.t2k.many.frag # found chain 1lm8V in template set T0287 117 :ILGIFLPFF 1lm8V 84 :VLPVWLNFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12472 # 2bzvA.117.68 read from T0287.t2k.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)I117 (2bzvA)A283 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 2bzvA 284 :LSLKLPFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=12473 # 1f8eA.117.323 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)F121 (1f8eA)F410 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILGI 1f8eA 406 :YSGS T0287 122 :LPFF 1f8eA 411 :MDYW Number of specific fragments extracted= 2 number of extra gaps= 1 total=12475 # 1ttwA.117.35 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 T0287 117 :ILGIFLP 1ttwA 36 :WVVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=12476 # 1h2wA.118.325 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1h2wA 326 :W T0287 120 :IFLPFFS 1h2wA 328 :VLVPEHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12478 # 1w66A.118.132 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1w66A 131 :SGVWLPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=12479 # 1seiA.118.58 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 T0287 118 :LGIFL 1seiA 59 :LRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12481 # 1ogoX.118.146 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1ogoX 147 :I T0287 120 :IFLPFFS 1ogoX 149 :IRVPADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12483 # 3eipA.118.54 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 118 :LGIFLPFFS 3eipA 55 :VPLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12484 # 1as4B.118.13 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1as4B 371 :L T0287 120 :IFLPFFS 1as4B 373 :IIVPTDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12486 # 1crzA.118.230 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 118 :LGIFL 1crzA 237 :LAFAL T0287 126 :S 1crzA 245 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=12488 # 1t1uA.118.168 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 T0287 118 :LGIFLPFF 1t1uA 170 :SSYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=12489 # 1kaeA.118.126 read from T0287.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :L 1kaeA 127 :V T0287 120 :IFLPF 1kaeA 129 :LYIPG T0287 126 :S 1kaeA 135 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=12492 # 1cv8.118.136 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)S126 (1cv8)N145 because G (3-10) conformation "forbidden" or filtered. T0287 118 :L 1cv8 137 :I T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=12495 # 1jo0A.118.81 read from T0287.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1jo0A)E91 because D (zeta) conformation "forbidden" or filtered. T0287 118 :L 1jo0A 83 :L T0287 120 :IFLPFF 1jo0A 85 :LYRPSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=12497 # 1qw9A.118.23 read from T0287.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 118 :LG 1qw9A 24 :YG T0287 122 :L 1qw9A 28 :I T0287 125 :FS 1qw9A 31 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=12500 # 1g9gA.118.107 read from T0287.t2k.many.frag # found chain 1g9gA in template set T0287 118 :LGIFLPFFS 1g9gA 108 :PATYAPEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12501 # 3cla.118.138 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 118 :LGIFL 3cla 145 :LNISA T0287 124 :FFS 3cla 151 :PWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12503 # 1chd.118.129 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1chd 276 :V T0287 120 :IFLPFFS 1chd 278 :VILTGMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12505 # 2be1A.118.133 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 Warning: unaligning (T0287)S126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2be1A)K252 T0287 118 :LGIF 2be1A 244 :ISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=12506 # 1t4bA.118.222 read from T0287.t2k.many.frag # found chain 1t4bA in training set T0287 118 :LGIFLPFFS 1t4bA 223 :AGSLIPWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=12507 # 1f8eA.118.75 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1f8eA 158 :LISWPLSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12508 # 1t61A.118.160 read from T0287.t2k.many.frag # found chain 1t61A in training set T0287 118 :LGIFLPFFS 1t61A 161 :PGSCLEEFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=12509 # 1t62A.118.70 read from T0287.t2k.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)S126 (1t62A)S1079 because L (left) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1t62A 1071 :YDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12510 # 1y8xB.118.78 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 118 :LGIFLPFFS 1y8xB 423 :LAVADVTTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12511 # 1lm8V.118.31 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 118 :L 1lm8V 85 :L T0287 120 :IFLPFFS 1lm8V 87 :VWLNFDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=12513 # 1flmA.118.15 read from T0287.t2k.many.frag # found chain 1flmA in training set T0287 118 :LGIFLPFFS 1flmA 16 :VAIATQGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=12514 # 1sz2A.118.114 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 T0287 118 :LGIFLPFF 1sz2A 104 :VSMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=12515 # 1sqwA.118.85 read from T0287.t2k.many.frag # found chain 1sqwA in template set T0287 118 :LGIFLPFFS 1sqwA 86 :LDYLAPYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12516 # 1ttwA.118.36 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 T0287 118 :LGIFLP 1ttwA 37 :VVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=12517 # 2be1A.118.233 read from T0287.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFFS 2be1A 347 :VSPTFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=12518 # 2fhpA.118.35 read from T0287.t2k.many.frag # found chain 2fhpA in template set T0287 118 :LGIFLPFFS 2fhpA 33 :FNMIGPYFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12519 # 1repC.118.135 read from T0287.t2k.many.frag # found chain 1repC in template set Warning: unaligning (T0287)F124 (1repC)L142 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIFLP 1repC 136 :IPFFIG T0287 125 :FS 1repC 143 :QN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12521 # 2asbA.118.26 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 118 :L 2asbA 131 :V T0287 120 :IF 2asbA 133 :VR T0287 124 :FFS 2asbA 137 :TET Number of specific fragments extracted= 3 number of extra gaps= 2 total=12524 # 1h2wA.119.326 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1h2wA 328 :VLVPEHEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12525 # 1w66A.119.133 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1w66A 132 :GVWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=12527 # 1ogoX.119.147 read from T0287.t2k.many.frag # found chain 1ogoX in training set T0287 119 :GIFLPFFSK 1ogoX 148 :VIRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12528 # 1crzA.119.231 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 119 :GIFL 1crzA 238 :AFAL T0287 126 :SK 1crzA 245 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12530 # 3eipA.119.55 read from T0287.t2k.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)K127 (3eipA)H64 because P (beta_P) conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 3eipA 56 :PLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=12531 # 1seiA.119.59 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 119 :GIFL 1seiA 60 :RIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12533 # 1as4B.119.14 read from T0287.t2k.many.frag # found chain 1as4B in template set T0287 119 :GIFLPFFSK 1as4B 372 :MIIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12534 # 1t1uA.119.169 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 119 :GIFLPFF 1t1uA 171 :SYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=12535 # 1cv8.119.137 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFL 1cv8 138 :IIWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12537 # 1y8xB.119.79 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 119 :GIFLPFFSK 1y8xB 424 :AVADVTTPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12538 # 1kaeA.119.127 read from T0287.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)K127 (1kaeA)A136 because D (zeta) conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1kaeA 128 :GLYIPGGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12539 # 1flmA.119.16 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1flmA 17 :AIATQGED Number of specific fragments extracted= 1 number of extra gaps= 1 total=12540 # 1f8eA.119.76 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIF 1f8eA 158 :LIS T0287 123 :PF 1f8eA 162 :PL T0287 126 :SK 1f8eA 165 :SP Number of specific fragments extracted= 3 number of extra gaps= 2 total=12543 # 1jo0A.119.82 read from T0287.t2k.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1jo0A 85 :LYRPSEEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12544 # 2asbA.119.27 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIF 2asbA 132 :VVR T0287 124 :F 2asbA 137 :T T0287 126 :SK 2asbA 139 :TK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12547 # 1t62A.119.71 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 119 :GIFLPFFSK 1t62A 1072 :DIILDGQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12548 # 1sz2A.119.115 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 119 :GIFLPFF 1sz2A 105 :SMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=12549 # 1ttwA.119.37 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)G119 (1ttwA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 2 total=12550 # 1lm8V.119.32 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1lm8V 87 :VWLNFDGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12551 # 1mpxA.119.461 read from T0287.t2k.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)S126 (1mpxA)T491 because G (3-10) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1mpxA 484 :TFVTEPL T0287 127 :K 1mpxA 492 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=12553 # 1hynP.119.230 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)G119 (1hynP)V231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1hynP 232 :GRADFLE Number of specific fragments extracted= 1 number of extra gaps= 2 total=12554 # 1g9gA.119.108 read from T0287.t2k.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)S126 (1g9gA)Q116 because G (3-10) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1g9gA 109 :ATYAPEF T0287 127 :K 1g9gA 117 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=12556 # 1chd.119.130 read from T0287.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1chd 278 :VILTGMGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=12557 # 2bzvA.119.70 read from T0287.t2k.many.frag # found chain 2bzvA in template set T0287 119 :GIFLPFFSK 2bzvA 285 :SLKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12558 # 1qg3A.119.19 read from T0287.t2k.many.frag # found chain 1qg3A in template set Warning: unaligning (T0287)S126 (1qg3A)G1152 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1qg3A 1145 :FNWLPPS T0287 127 :K 1qg3A 1153 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=12560 # 1io0A.119.124 read from T0287.t2k.many.frag # found chain 1io0A in training set Warning: unaligning (T0287)G119 (1io0A)E284 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1io0A 285 :LRIDNQSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12561 # 3cla.119.139 read from T0287.t2k.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFL 3cla 147 :ISA T0287 124 :FFSK 3cla 151 :PWVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12563 # 2bjqA.119.33 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)V34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :FF 2bjqA 39 :KF T0287 127 :K 2bjqA 42 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=12566 # 1oltA.119.55 read from T0287.t2k.many.frag # found chain 1oltA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)K64 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)K64 T0287 119 :GIFLPFF 1oltA 56 :YVHIPFC Number of specific fragments extracted= 1 number of extra gaps= 1 total=12567 # 1t61A.119.161 read from T0287.t2k.many.frag # found chain 1t61A in training set T0287 119 :GIFLPFFSK 1t61A 162 :GSCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12568 # 1h2wA.120.327 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 120 :IFLPFFSKP 1h2wA 328 :VLVPEHEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=12569 # 1ttwA.120.38 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=12570 # 1crzA.120.232 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 120 :IFL 1crzA 239 :FAL T0287 126 :SKP 1crzA 245 :GSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12572 # 1flmA.120.17 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1flmA 18 :IATQGED T0287 128 :P 1flmA 26 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=12574 # 1mpxA.120.462 read from T0287.t2k.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)K127 (1mpxA)E492 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1mpxA 485 :FVTEPLT T0287 128 :P 1mpxA 493 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=12576 # 1w66A.120.134 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1w66A 133 :VWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=12578 # 2asbA.120.28 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IF 2asbA 133 :VR T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=12581 # 3eipA.120.56 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 120 :IFLPFFSKP 3eipA 57 :LLQPYFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12582 # 1ogoX.120.148 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ogoX 149 :IRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=12583 # 1t1uA.120.170 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH T0287 128 :P 1t1uA 180 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=12585 # 1y8xB.120.80 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IF 1y8xB 425 :VA T0287 123 :PFFS 1y8xB 428 :VTTP T0287 128 :P 1y8xB 433 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=12588 # 1as4B.120.15 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1as4B 373 :IIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12589 # 1sz2A.120.116 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 120 :IFLPFF 1sz2A 106 :MAIPML T0287 128 :P 1sz2A 114 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=12591 # 1seiA.120.60 read from T0287.t2k.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG T0287 128 :P 1seiA 69 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=12594 # 2bjqA.120.34 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :FF 2bjqA 39 :KF T0287 127 :KP 2bjqA 42 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=12597 # 1hynP.120.231 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. T0287 120 :IFLP 1hynP 232 :GRAD T0287 125 :FSKP 1hynP 237 :LEQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12599 # 1f8eA.120.77 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PF 1f8eA 162 :PL T0287 126 :SKP 1f8eA 165 :SPP Number of specific fragments extracted= 3 number of extra gaps= 2 total=12602 # 1kaeA.120.128 read from T0287.t2k.many.frag # found chain 1kaeA in training set T0287 120 :IFLPFFSKP 1kaeA 129 :LYIPGGSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12603 # 1cv8.120.138 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FSK 1cv8 144 :DNG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12605 # 1te0A.120.296 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 T0287 120 :IF 1te0A 333 :VV T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12607 # 1t62A.120.72 read from T0287.t2k.many.frag # found chain 1t62A in template set T0287 120 :IFLPFFSKP 1t62A 1073 :IILDGQSQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12608 # 1r5mA.120.142 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1r5mA 255 :NVL T0287 124 :FFSKP 1r5mA 259 :FHRAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12610 # 1ut7A.120.63 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ut7A 61 :NKALFGEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12611 # 1wnaA.120.47 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1wnaA 48 :LLLHTGKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12612 # 1jo0A.120.83 read from T0287.t2k.many.frag # found chain 1jo0A in training set T0287 120 :IFLPFFSKP 1jo0A 85 :LYRPSEEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12613 # 1t61A.120.162 read from T0287.t2k.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)P128 (1t61A)A171 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1t61A 163 :SCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12614 # 1l1dA.120.48 read from T0287.t2k.many.frag # found chain 1l1dA in template set T0287 120 :IFLPFFSKP 1l1dA 419 :IYVDVVSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12615 # 1lm8V.120.33 read from T0287.t2k.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)K127 (1lm8V)E94 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1lm8V 87 :VWLNFDG T0287 128 :P 1lm8V 95 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=12617 # 2bzvA.120.71 read from T0287.t2k.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)P128 (2bzvA)G294 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 2bzvA 286 :LKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12618 # 3bamA.120.94 read from T0287.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 3bamA 95 :VYK T0287 124 :FFSK 3bamA 99 :FIEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12620 # 1ttwA.121.39 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 121 :FLP 1ttwA 40 :LAP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12622 # 1flmA.121.18 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1flmA 19 :ATQGED T0287 128 :PI 1flmA 26 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=12624 # 1h2wA.121.328 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 121 :FLPFFSKPI 1h2wA 329 :LVPEHEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12625 # 2bjqA.121.35 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :FL 2bjqA 36 :LW T0287 124 :F 2bjqA 39 :K T0287 126 :S 2bjqA 41 :G T0287 128 :PI 2bjqA 43 :PI Number of specific fragments extracted= 4 number of extra gaps= 3 total=12629 # 1hynP.121.232 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLP 1hynP 233 :RAD T0287 125 :FS 1hynP 237 :LE T0287 128 :PI 1hynP 240 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12632 # 1mpxA.121.463 read from T0287.t2k.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)K127 (1mpxA)E492 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFS 1mpxA 486 :VTEPLT T0287 128 :PI 1mpxA 493 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12634 # 1y8xB.121.81 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 121 :FLPFFSKPI 1y8xB 426 :ADVTTPQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12635 # 2asbA.121.29 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 2asbA 134 :RI T0287 124 :F 2asbA 137 :T T0287 126 :SKPI 2asbA 139 :TKAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=12638 # 1crzA.121.233 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 240 :AL T0287 127 :KPI 1crzA 246 :SLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=12640 # 1dkiA.121.193 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)S126 (1dkiA)N81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 121 :FLPFF 1dkiA 76 :NNPYF T0287 127 :K 1dkiA 82 :H T0287 129 :I 1dkiA 84 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=12643 # 1te0A.121.297 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 T0287 121 :F 1te0A 334 :V T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12645 # 1ut7A.121.64 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1ut7A 62 :KALFGEK T0287 129 :I 1ut7A 70 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=12647 # 1t1uA.121.171 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 121 :FLPFF 1t1uA 173 :RLPGH T0287 128 :PI 1t1uA 180 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12649 # 1sz2A.121.117 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 121 :FLPFF 1sz2A 107 :AIPML T0287 128 :PI 1sz2A 114 :EH Number of specific fragments extracted= 2 number of extra gaps= 1 total=12651 # 3eipA.121.57 read from T0287.t2k.many.frag # found chain 3eipA in training set T0287 121 :FLPFFSKPI 3eipA 58 :LQPYFNHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12652 # 1f8eA.121.78 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 1f8eA 160 :S T0287 123 :PFFSKPI 1f8eA 162 :PLSSPPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12654 # 1oh0A.121.88 read from T0287.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 121 :F 1oh0A 89 :E T0287 124 :F 1oh0A 92 :W T0287 127 :KPI 1oh0A 95 :QPC Number of specific fragments extracted= 3 number of extra gaps= 2 total=12657 # 1ogoX.121.149 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1ogoX 150 :RVPADAN T0287 129 :I 1ogoX 158 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=12659 # 1w0pA.121.419 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :FLP 1w0pA 420 :NLN T0287 125 :FS 1w0pA 424 :VS T0287 128 :PI 1w0pA 427 :PI Number of specific fragments extracted= 3 number of extra gaps= 2 total=12662 # 1r5mA.121.143 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1r5mA 256 :VL T0287 124 :FFSKPI 1r5mA 259 :FHRAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12664 # 1w66A.121.135 read from T0287.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFF 1w66A 134 :WLPGR T0287 127 :K 1w66A 140 :A T0287 129 :I 1w66A 142 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=12667 # 1crzA.121.277 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 284 :TS T0287 124 :FF 1crzA 287 :QA T0287 127 :KPI 1crzA 290 :RPQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=12670 # 1nwzA.121.94 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FL 1nwzA 95 :TF T0287 124 :FF 1nwzA 98 :YQ T0287 127 :KPI 1nwzA 101 :TPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=12673 # 1as4B.121.16 read from T0287.t2k.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)K127 (1as4B)Q380 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1as4B 374 :IVPTDT T0287 129 :I 1as4B 382 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=12675 # 1quqB.121.16 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FL 1quqB 17 :LA T0287 124 :FFSKP 1quqB 20 :FIDKP Number of specific fragments extracted= 2 number of extra gaps= 2 total=12677 # 1cv8.121.139 read from T0287.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)S126 (1cv8)N145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1cv8 140 :WN T0287 125 :F 1cv8 144 :D T0287 129 :I 1cv8 148 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=12680 # 1wnaA.121.48 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1wnaA 49 :LLHTGKK T0287 129 :I 1wnaA 57 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12682 # 2fbeA.121.56 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2fbeA 57 :TP T0287 124 :FFS 2fbeA 60 :FTS T0287 129 :I 2fbeA 65 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=12685 # 2axwA.121.82 read from T0287.t2k.many.frag # found chain 2axwA in template set Warning: unaligning (T0287)P128 (2axwA)Q90 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 2axwA 83 :SRPGQEE T0287 129 :I 2axwA 91 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=12687 # 3bamA.121.95 read from T0287.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 3bamA 96 :YK T0287 124 :FFSK 3bamA 99 :FIEN T0287 129 :I 3bamA 104 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=12690 # 2bjqA.122.36 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 122 :L 2bjqA 37 :W T0287 124 :FFS 2bjqA 39 :KFG T0287 128 :PIM 2bjqA 43 :PIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=12693 # 1flmA.122.19 read from T0287.t2k.many.frag # found chain 1flmA in training set T0287 122 :LPFFSKPIM 1flmA 20 :TQGEDGPHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12694 # 1hynP.122.233 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 122 :LPFFSKPIM 1hynP 234 :ADFLEQPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12695 # 1ttwA.122.40 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 T0287 122 :LP 1ttwA 41 :AP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=12697 # 1y8xB.122.82 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1y8xB 428 :VTTPQTVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12698 # 1mpxA.122.464 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 122 :LPFFSKPIM 1mpxA 487 :TEPLTEPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12699 # 1dkiA.122.194 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 122 :LPFFSKPIM 1dkiA 77 :NPYFNHPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12700 # 1h2wA.122.329 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 122 :LPFFSKPIM 1h2wA 330 :VPEHEKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12701 # 1te0A.122.298 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 1 number of extra gaps= 2 total=12702 # 2asbA.122.30 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 124 :FFSKPIM 2asbA 137 :TETKASE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12703 # 1quqB.122.17 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1quqB 18 :A T0287 124 :FFSKPIM 1quqB 20 :FIDKPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=12705 # 1crzA.122.234 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 122 :L 1crzA 241 :L T0287 126 :SKPIM 1crzA 245 :GSLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12707 # 1crzA.122.278 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 122 :L 1crzA 285 :S T0287 124 :FF 1crzA 287 :QA T0287 127 :KPIM 1crzA 290 :RPQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12710 # 1w0pA.122.420 read from T0287.t2k.many.frag # found chain 1w0pA in training set T0287 122 :LPFFSKPIM 1w0pA 421 :LNGVSAPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=12711 # 1nwzA.122.95 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :L 1nwzA 96 :F T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12714 # 1ut7A.122.65 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFSK 1ut7A 63 :ALFGEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 2 number of extra gaps= 1 total=12716 # 1oh0A.122.89 read from T0287.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 122 :L 1oh0A 90 :M T0287 124 :F 1oh0A 92 :W T0287 127 :KPIM 1oh0A 95 :QPCA Number of specific fragments extracted= 3 number of extra gaps= 2 total=12719 # 1amx.122.59 read from T0287.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0287)L122 (1amx)K198 because L (left) conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1amx 199 :SYVSKDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=12720 # 2bsfA.122.86 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFSK 2bsfA 237 :LTVTSN T0287 129 :IM 2bsfA 244 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12722 # 2fbeA.122.57 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2fbeA 58 :P T0287 124 :FFS 2fbeA 60 :FTS T0287 129 :IM 2fbeA 65 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=12725 # 1sz2A.122.118 read from T0287.t2k.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 Warning: unaligning (T0287)I129 (1sz2A)H115 because G (3-10) conformation "forbidden" or filtered. T0287 122 :LPFF 1sz2A 108 :IPML T0287 128 :P 1sz2A 114 :E T0287 130 :M 1sz2A 116 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=12728 # 1j0pA.122.11 read from T0287.t2k.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 Warning: unaligning (T0287)M130 (1j0pA)V19 because P (beta_P) conformation "forbidden" or filtered. T0287 122 :L 1j0pA 11 :M T0287 124 :FF 1j0pA 13 :KT T0287 128 :PI 1j0pA 17 :PV Number of specific fragments extracted= 3 number of extra gaps= 3 total=12731 # 1b12A.122.36 read from T0287.t2k.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 122 :L 1b12A 112 :D T0287 128 :PIM 1b12A 118 :TLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12733 # 1r5mA.122.144 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1r5mA)R261 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1r5mA 257 :L T0287 124 :FF 1r5mA 259 :FH T0287 127 :KPIM 1r5mA 262 :APIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12736 # 2a25A.122.137 read from T0287.t2k.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (2a25A)G229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2a25A 227 :L T0287 125 :F 2a25A 230 :H T0287 127 :K 2a25A 232 :R T0287 129 :IM 2a25A 234 :LT Number of specific fragments extracted= 4 number of extra gaps= 3 total=12740 # 4bcl.122.244 read from T0287.t2k.many.frag # found chain 4bcl in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (4bcl)Q247 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)Q247 Warning: unaligning (T0287)K127 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (4bcl)S253 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :L 4bcl 245 :V T0287 125 :FS 4bcl 248 :LN T0287 128 :PI 4bcl 251 :PA Number of specific fragments extracted= 3 number of extra gaps= 3 total=12743 # 1cczA.122.78 read from T0287.t2k.many.frag # found chain 1cczA in training set Warning: unaligning (T0287)K127 (1cczA)D84 because P (beta_P) conformation "forbidden" or filtered. T0287 122 :LPFFS 1cczA 79 :SPNIT T0287 128 :PIM 1cczA 85 :TMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12745 # 1b7yA.122.257 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)F124 (1b7yA)F260 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :LP 1b7yA 258 :FP T0287 125 :FS 1b7yA 261 :VE T0287 128 :P 1b7yA 264 :G T0287 130 :M 1b7yA 266 :Q Number of specific fragments extracted= 4 number of extra gaps= 3 total=12749 # 1zsqA.122.46 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 122 :L 1zsqA 116 :S T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIM 1zsqA 122 :PFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12752 # 1t1uA.122.172 read from T0287.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 122 :LPFF 1t1uA 174 :LPGH T0287 128 :PIM 1t1uA 180 :DTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12754 # 2bjqA.123.37 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. T0287 124 :F 2bjqA 39 :K T0287 126 :SKPIMF 2bjqA 41 :GKPIHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=12756 # 1flmA.123.20 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFS 1flmA 21 :QGED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12758 # 1hynP.123.234 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 123 :PFFSKPIMF 1hynP 235 :DFLEQPVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=12759 # 1y8xB.123.83 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 123 :PFFSKPIMF 1y8xB 428 :VTTPQTVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12760 # 1ttwA.123.41 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 123 :P 1ttwA 42 :P T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=12762 # 1te0A.123.299 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :F 1te0A 344 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=12765 # 1dkiA.123.195 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFSK 1dkiA 78 :PYFNH T0287 129 :IMF 1dkiA 84 :KNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12767 # 1quqB.123.18 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIMF 1quqB 23 :KPVCF Number of specific fragments extracted= 2 number of extra gaps= 2 total=12769 # 1h2wA.123.330 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 123 :PFFSKPIMF 1h2wA 331 :PEHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12770 # 1crzA.123.279 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1crzA)A288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 124 :F 1crzA 287 :Q T0287 127 :KPIMF 1crzA 290 :RPQVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12772 # 1crzA.123.235 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMF 1crzA 246 :SLNLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=12773 # 1mpxA.123.465 read from T0287.t2k.many.frag # found chain 1mpxA in template set T0287 123 :PFFSKPIMF 1mpxA 488 :EPLTEPLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12774 # 2asbA.123.31 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 2asbA 137 :TETKASEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=12775 # 1nwzA.123.96 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 3 total=12777 # 1w0pA.123.421 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 123 :P 1w0pA 422 :N T0287 125 :FSKPIMF 1w0pA 424 :VSAPIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12779 # 1dg6A.123.123 read from T0287.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)P123 (1dg6A)T214 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1dg6A 215 :SYPAPILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12780 # 1zsqA.123.47 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMF 1zsqA 122 :PFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12782 # 2a25A.123.138 read from T0287.t2k.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2a25A)R232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 2a25A 229 :GHR T0287 129 :IMF 2a25A 234 :LTW Number of specific fragments extracted= 2 number of extra gaps= 2 total=12784 # 2bsfA.123.87 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFFSK 2bsfA 238 :TVTSN T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12786 # 1b7yA.123.258 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFS 1b7yA 259 :PFVE T0287 128 :PIMF 1b7yA 264 :GAQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12788 # 1ut7A.123.66 read from T0287.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)F73 T0287 123 :PFFSK 1ut7A 64 :LFGEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 2 number of extra gaps= 2 total=12790 # 1vchA.123.86 read from T0287.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)F124 (1vchA)Y88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1vchA)E90 because P (beta_P) conformation "forbidden" or filtered. T0287 123 :P 1vchA 87 :P T0287 125 :F 1vchA 89 :M T0287 127 :KPIMF 1vchA 91 :DPIIQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=12793 # 1amx.123.60 read from T0287.t2k.many.frag # found chain 1amx in template set T0287 123 :PFFSKPIMF 1amx 199 :SYVSKDITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12794 # 1oh0A.123.90 read from T0287.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 127 :KPIMF 1oh0A 95 :QPCAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12796 # 2fbeA.123.58 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IMF 2fbeA 65 :HYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=12798 # 1xubA.123.259 read from T0287.t2k.many.frag # found chain 1xubA in training set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xubA)R244 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xubA)R244 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1xubA)S246 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1xubA)S246 T0287 123 :PFF 1xubA 240 :VEI T0287 130 :MF 1xubA 247 :LM Number of specific fragments extracted= 2 number of extra gaps= 1 total=12800 # 1j0pA.123.12 read from T0287.t2k.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 Warning: unaligning (T0287)M130 (1j0pA)V19 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 1j0pA 13 :KT T0287 128 :PI 1j0pA 17 :PV T0287 131 :F 1j0pA 20 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=12803 # 1b12A.123.37 read from T0287.t2k.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 128 :PIMF 1b12A 118 :TLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12804 # 1cczA.123.79 read from T0287.t2k.many.frag # found chain 1cczA in training set T0287 123 :PFFSKPIMF 1cczA 80 :PNITDTMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12805 # 2fojA.123.12 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P123 because first residue in template chain is (2fojA)T63 Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMF 2fojA 69 :ATF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12807 # 2bjqA.124.38 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 2bjqA 39 :KF T0287 127 :KPIMFK 2bjqA 42 :KPIHGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12809 # 1y8xB.124.84 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 124 :FFSKPIMFK 1y8xB 429 :TTPQTVLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12810 # 1hynP.124.235 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 124 :FFSKPIMFK 1hynP 236 :FLEQPVLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12811 # 1ttwA.124.42 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=12812 # 1flmA.124.21 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 T0287 124 :FFS 1flmA 22 :GED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=12814 # 1te0A.124.300 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :FK 1te0A 344 :LQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=12817 # 1quqB.124.19 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIMFK 1quqB 23 :KPVCFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12819 # 1dkiA.124.196 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1dkiA)F87 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 1dkiA 79 :YFNH T0287 129 :IMF 1dkiA 84 :KNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12821 # 1crzA.124.280 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1crzA)V293 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 1crzA 287 :QA T0287 127 :KPI 1crzA 290 :RPQ T0287 131 :FK 1crzA 294 :YK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12824 # 1crzA.124.236 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1crzA)V251 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :KPIMF 1crzA 246 :SLNLY Number of specific fragments extracted= 1 number of extra gaps= 2 total=12825 # 1h2wA.124.331 read from T0287.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1h2wA 332 :EHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=12826 # 1dg6A.124.124 read from T0287.t2k.many.frag # found chain 1dg6A in training set T0287 124 :FFSKPIMFK 1dg6A 215 :SYPAPILLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=12827 # 1w0pA.124.422 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1w0pA 424 :VSAPIILQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=12828 # 2asbA.124.32 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIMFK 2asbA 139 :TKASEGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12830 # 1zsqA.124.48 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMFK 1zsqA 122 :PFVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=12832 # 1nwzA.124.97 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12834 # 2bsfA.124.88 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2bsfA)T247 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2bsfA 239 :VTSN T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12836 # 1gvp.124.37 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M130 (1gvp)L44 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFSKPI 1gvp 38 :GNEYPV T0287 131 :FK 1gvp 45 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=12838 # 1b7yA.124.259 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 124 :FFS 1b7yA 260 :FVE T0287 128 :PIMFK 1b7yA 264 :GAQFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12840 # 2a25A.124.139 read from T0287.t2k.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IMFK 2a25A 234 :LTWE Number of specific fragments extracted= 3 number of extra gaps= 2 total=12843 # 1amx.124.61 read from T0287.t2k.many.frag # found chain 1amx in template set T0287 124 :FFSKPIMFK 1amx 200 :YVSKDITIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12844 # 1vchA.124.87 read from T0287.t2k.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)F124 (1vchA)Y88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. T0287 125 :FS 1vchA 89 :ME T0287 128 :PIMFK 1vchA 92 :PIIQE Number of specific fragments extracted= 2 number of extra gaps= 2 total=12846 # 1gnyA.124.100 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K132 (1gnyA)T199 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1gnyA 191 :TADTDLTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12847 # 2fojA.124.13 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMFK 2fojA 69 :ATFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=12849 # 1mpxA.124.466 read from T0287.t2k.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)K127 (1mpxA)E492 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 1mpxA 489 :PLT T0287 128 :PIMFK 1mpxA 493 :PLQIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12851 # 1uh4A.124.584 read from T0287.t2k.many.frag # found chain 1uh4A in template set T0287 124 :FFSKPIMFK 1uh4A 585 :NDSVSHTVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12852 # 2fbeA.124.59 read from T0287.t2k.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2fbeA)E68 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IMF 2fbeA 65 :HYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=12854 # 1wnaA.124.51 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 1wnaA 52 :TGKK T0287 129 :IMFK 1wnaA 57 :LLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12856 # 1y1oA.124.70 read from T0287.t2k.many.frag # found chain 1y1oA in template set T0287 124 :FFSKPIMFK 1y1oA 68 :KRSAAVITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12857 # 1l6pA.124.75 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 1l6pA 76 :IYRD T0287 129 :IMFK 1l6pA 81 :LTLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=12859 # 1quqB.125.20 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1quqB 21 :IDKPVCFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12860 # 1dkiA.125.197 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 125 :FSK 1dkiA 80 :FNH T0287 129 :IMFKM 1dkiA 84 :KNLFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12862 # 1y8xB.125.85 read from T0287.t2k.many.frag # found chain 1y8xB in template set T0287 125 :FSKPIMFKM 1y8xB 430 :TPQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12863 # 2bjqA.125.39 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FS 2bjqA 40 :FG T0287 128 :PIMFKM 2bjqA 43 :PIHGRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12865 # 1te0A.125.301 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 125 :F 1te0A 338 :D T0287 127 :K 1te0A 340 :K T0287 131 :FKM 1te0A 344 :LQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12868 # 1hynP.125.236 read from T0287.t2k.many.frag # found chain 1hynP in template set T0287 125 :FSKPIMFKM 1hynP 237 :LEQPVLGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12869 # 1flmA.125.22 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 125 :FSKPIMF 1flmA 23 :EDGPHLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12870 # 1ttwA.125.43 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :KM 1ttwA 51 :FM Number of specific fragments extracted= 2 number of extra gaps= 2 total=12872 # 1crzA.125.281 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F125 (1crzA)A288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 127 :KPIMFKM 1crzA 290 :RPQVYKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12873 # 1crzA.125.237 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKM 1crzA 246 :SLNLYVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=12874 # 1dg6A.125.125 read from T0287.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)K132 (1dg6A)M223 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSKPIMF 1dg6A 216 :YPAPILL T0287 133 :M 1dg6A 224 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=12876 # 1gnyA.125.101 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1gnyA 192 :AD T0287 128 :PIMFKM 1gnyA 195 :DLTLTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=12878 # 1w0pA.125.423 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)M130 (1w0pA)I429 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPI 1w0pA 424 :VSAPI T0287 131 :FKM 1w0pA 430 :LQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12880 # 1zsqA.125.49 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 125 :F 1zsqA 119 :R T0287 128 :PIMFKM 1zsqA 122 :PFVLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12882 # 1gvp.125.38 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 T0287 125 :FSKPIMFK 1gvp 39 :NEYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=12883 # 2asbA.125.33 read from T0287.t2k.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)I129 (2asbA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKP 2asbA 138 :ETKA T0287 130 :MFKM 2asbA 143 :EGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12885 # 1nwzA.125.98 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 125 :F 1nwzA 99 :Q T0287 127 :KPIM 1nwzA 101 :TPTK T0287 133 :M 1nwzA 107 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=12888 # 1h2wA.125.332 read from T0287.t2k.many.frag # found chain 1h2wA in training set T0287 125 :FSKPIMFKM 1h2wA 333 :HEKDVLEWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12889 # 1ikoP.125.77 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ikoP)I115 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPI 1ikoP 107 :PDQDV T0287 131 :FK 1ikoP 113 :FT Number of specific fragments extracted= 2 number of extra gaps= 2 total=12891 # 1b7yA.125.260 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFKM 1b7yA 264 :GAQFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12893 # 1ddlA.125.123 read from T0287.t2k.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ddlA)S124 T0287 126 :SKPIMFKM 1ddlA 125 :VKPIDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=12894 # 1pgl2.125.290 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 1pgl2 291 :IQE T0287 129 :IMFKM 1pgl2 295 :VVLKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=12896 # 2awgA.125.9 read from T0287.t2k.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)F125 (2awgA)L97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 126 :SK 2awgA 98 :GN T0287 129 :IMFKM 2awgA 101 :LLRKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=12898 # 2bsfA.125.89 read from T0287.t2k.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2bsfA)T247 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 2bsfA 240 :TSN T0287 129 :IMF 2bsfA 244 :VLL T0287 133 :M 2bsfA 248 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=12901 # 1vcaA.125.104 read from T0287.t2k.many.frag # found chain 1vcaA in training set Warning: unaligning (T0287)S126 (1vcaA)G106 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 1vcaA 105 :A T0287 127 :KPIMFKM 1vcaA 107 :KPITVKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=12903 # 1v05A.125.20 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)S126 (1v05A)G2651 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 125 :F 1v05A 2650 :V T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKM 1v05A 2656 :FTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=12906 # 2fojA.125.14 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)S126 (2fojA)R66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2fojA)Q72 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :F 2fojA 65 :W T0287 127 :K 2fojA 67 :S T0287 129 :IMF 2fojA 69 :ATF T0287 133 :M 2fojA 73 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=12910 # 1uh4A.125.585 read from T0287.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)K127 (1uh4A)V588 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FS 1uh4A 586 :DS T0287 128 :PIMFKM 1uh4A 589 :SHTVNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12912 # 1l6pA.125.76 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSK 1l6pA 77 :YRD T0287 129 :IMFKM 1l6pA 81 :LTLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=12914 # 2bbdA.125.126 read from T0287.t2k.many.frag # found chain 2bbdA in template set Warning: unaligning (T0287)P128 (2bbdA)N131 because L (left) conformation "forbidden" or filtered. T0287 125 :FSK 2bbdA 128 :MVQ T0287 129 :IMFKM 2bbdA 132 :IILSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12916 # 1te0A.126.302 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)K132 (1te0A)Q345 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1te0A 339 :DK T0287 131 :F 1te0A 344 :L T0287 133 :MS 1te0A 346 :VT Number of specific fragments extracted= 3 number of extra gaps= 2 total=12919 # 1dkiA.126.198 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 126 :SK 1dkiA 81 :NH T0287 129 :IMFKMS 1dkiA 84 :KNLFAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=12921 # 2bjqA.126.40 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFKM 2bjqA 43 :PIHGRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=12922 # 1quqB.126.21 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SKP 1quqB 22 :DKP T0287 130 :MFK 1quqB 26 :CFV T0287 134 :S 1quqB 30 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=12925 # 1y8xB.126.86 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 T0287 126 :SKPIMFKM 1y8xB 431 :PQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12926 # 1gnyA.126.102 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1gnyA 193 :D T0287 128 :PIMFKMS 1gnyA 195 :DLTLTCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12928 # 1flmA.126.23 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 126 :S 1flmA 24 :D T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :S 1flmA 32 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=12931 # 1dg6A.126.126 read from T0287.t2k.many.frag # found chain 1dg6A in training set T0287 126 :SKPIMFKMS 1dg6A 217 :PAPILLMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=12932 # 1crzA.126.282 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 126 :SKPIMFKMS 1crzA 289 :GRPQVYKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12933 # 1hynP.126.237 read from T0287.t2k.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1hynP 238 :E T0287 128 :PIMFKMS 1hynP 240 :PVLGFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=12935 # 1crzA.126.238 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1crzA 246 :SLNLYVMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=12936 # 1ttwA.126.44 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 134 :S 1ttwA 53 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=12938 # 1pgl2.126.291 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1pgl2 292 :QE T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=12940 # 1gvp.126.39 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 126 :SKPIMF 1gvp 40 :EYPVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=12941 # 1ikoP.126.78 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1ikoP 108 :D T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKMS 1ikoP 113 :FTIK Number of specific fragments extracted= 3 number of extra gaps= 2 total=12944 # 1v05A.126.21 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)S126 (1v05A)G2651 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKMS 1v05A 2656 :FTVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=12946 # 1b7yA.126.261 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1b7yA 262 :E T0287 128 :P 1b7yA 264 :G T0287 130 :MFKMS 1b7yA 266 :QFAVW Number of specific fragments extracted= 3 number of extra gaps= 2 total=12949 # 1l6pA.126.77 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1l6pA 78 :R T0287 129 :IMFKMS 1l6pA 81 :LTLPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12951 # 1ddlA.126.124 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 126 :SKPIMFKMS 1ddlA 125 :VKPIDVEAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=12952 # 1zsqA.126.50 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMS 1zsqA 122 :PFVLDAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12953 # 1wmxA.126.130 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 Warning: unaligning (T0287)S134 (1wmxA)P139 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 1wmxA 131 :T T0287 129 :IM 1wmxA 134 :QH T0287 133 :M 1wmxA 138 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=12956 # 1ogoX.126.154 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 126 :SK 1ogoX 155 :AN T0287 129 :IMFKMS 1ogoX 158 :RKFSVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=12958 # 2fojA.126.15 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 2fojA 66 :RS T0287 129 :IMFKMS 2fojA 69 :ATFQFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12960 # 1vcaA.126.105 read from T0287.t2k.many.frag # found chain 1vcaA in training set Warning: unaligning (T0287)S126 (1vcaA)G106 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 1vcaA 107 :KPITVKCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=12961 # 2awgA.126.10 read from T0287.t2k.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 126 :SK 2awgA 98 :GN T0287 129 :IMFKMS 2awgA 101 :LLRKKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=12963 # 1w0pA.126.424 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)M133 (1w0pA)S432 because G (3-10) conformation "forbidden" or filtered. T0287 126 :SKPIMFK 1w0pA 425 :SAPIILQ T0287 134 :S 1w0pA 433 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=12965 # 2d9rA.126.18 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MS 2d9rA 26 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12967 # 1mspA.126.64 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)K127 (1mspA)E66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1mspA)A71 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :S 1mspA 65 :K T0287 129 :IMF 1mspA 68 :VLM T0287 133 :MS 1mspA 72 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=12970 # 1mwpA.126.61 read from T0287.t2k.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 126 :SKPIMFK 1mwpA 89 :NQPVTIQ T0287 134 :S 1mwpA 97 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=12972 # 1nwzA.126.99 read from T0287.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1nwzA)K104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 127 :KPI 1nwzA 101 :TPT T0287 133 :MS 1nwzA 107 :VH Number of specific fragments extracted= 2 number of extra gaps= 2 total=12974 # 1te0A.127.303 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=12976 # 1quqB.127.22 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMFK 1quqB 23 :KPVCFV T0287 134 :SI 1quqB 30 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=12978 # 1gnyA.127.103 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1gnyA 195 :DLTLTCTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12979 # 1dkiA.127.199 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 127 :K 1dkiA 82 :H T0287 129 :IMFKMSI 1dkiA 84 :KNLFAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=12981 # 2bjqA.127.41 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 (2bjqA)G46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 T0287 128 :PIM 2bjqA 43 :PIH T0287 132 :KM 2bjqA 47 :RA Number of specific fragments extracted= 2 number of extra gaps= 3 total=12983 # 1y8xB.127.87 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 127 :KPIMFKM 1y8xB 432 :QTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=12984 # 1dg6A.127.127 read from T0287.t2k.many.frag # found chain 1dg6A in training set T0287 127 :KPIMFKMSI 1dg6A 218 :APILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=12985 # 1pgl2.127.292 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 127 :K 1pgl2 293 :E T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=12987 # 1wmxA.127.131 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSI 1wmxA 138 :IPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=12989 # 1l6pA.127.78 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1l6pA 81 :LTLPVTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=12990 # 1flmA.127.24 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SI 1flmA 32 :WN Number of specific fragments extracted= 2 number of extra gaps= 2 total=12992 # 1ddlA.127.125 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 127 :KPIMFKMSI 1ddlA 126 :KPIDVEANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=12993 # 1gvp.127.40 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 127 :KPIMF 1gvp 41 :YPVLV T0287 135 :I 1gvp 49 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=12995 # 1crzA.127.283 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 290 :RPQVYKVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=12996 # 1ikoP.127.79 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1ikoP)T114 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 1ikoP 109 :QDV T0287 131 :F 1ikoP 113 :F T0287 133 :MSI 1ikoP 115 :IKF Number of specific fragments extracted= 3 number of extra gaps= 2 total=12999 # 1v05A.127.22 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKMSI 1v05A 2656 :FTVDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13001 # 2d9rA.127.19 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSI 2d9rA 26 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=13003 # 1b7yA.127.262 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :P 1b7yA 264 :G T0287 130 :MFKMSI 1b7yA 266 :QFAVWW Number of specific fragments extracted= 2 number of extra gaps= 2 total=13005 # 1ogoX.127.155 read from T0287.t2k.many.frag # found chain 1ogoX in training set T0287 127 :KPIMFKMSI 1ogoX 156 :NGRKFSVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13006 # 1zsqA.127.51 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMSI 1zsqA 122 :PFVLDASL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13007 # 1qexA.127.155 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)K132 (1qexA)N161 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMF 1qexA 156 :STSVW T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13009 # 2fojA.127.16 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2fojA)A69 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 2fojA 67 :S T0287 130 :MFKMSI 2fojA 70 :TFQFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13011 # 1ttwA.127.45 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)I135 (1ttwA)A54 because G (3-10) conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 132 :KMS 1ttwA 51 :FMR Number of specific fragments extracted= 2 number of extra gaps= 3 total=13013 # 1mspA.127.65 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMFKMSI 1mspA 68 :VLMAVSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13015 # 1crzA.127.239 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 246 :SLNLYVMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13016 # 1mwpA.127.62 read from T0287.t2k.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1mwpA)W97 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPIMFK 1mwpA 90 :QPVTIQ T0287 135 :I 1mwpA 98 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=13018 # 1w0pA.127.425 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1w0pA 427 :PIILQSEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=13019 # 1vcaA.127.106 read from T0287.t2k.many.frag # found chain 1vcaA in training set T0287 127 :KPIMFKMSI 1vcaA 107 :KPITVKCSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13020 # 2awgA.127.11 read from T0287.t2k.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :K 2awgA 99 :N T0287 129 :IMFKMSI 2awgA 101 :LLRKKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13022 # 1iq4A.127.123 read from T0287.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0287)K127 (1iq4A)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1iq4A)R125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1iq4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFKMSI 1iq4A 127 :NYTLGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=13023 # 1te0A.128.304 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=13024 # 1gnyA.128.104 read from T0287.t2k.many.frag # found chain 1gnyA in training set T0287 128 :PIMFKMSIR 1gnyA 195 :DLTLTCTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=13025 # 1quqB.128.23 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :P 1quqB 24 :P T0287 130 :MFK 1quqB 26 :CFV T0287 134 :SIR 1quqB 30 :RLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=13028 # 1pgl2.128.293 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1pgl2 295 :VVLKFSQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13029 # 1dkiA.128.200 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 128 :PIMFKMSIR 1dkiA 83 :PKNLFAAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13030 # 1l6pA.128.79 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1l6pA 81 :LTLPVTIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13031 # 1dg6A.128.128 read from T0287.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)M130 (1dg6A)L221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 T0287 128 :PI 1dg6A 219 :PI T0287 131 :FKMSI 1dg6A 222 :LMKSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13033 # 1ddlA.128.126 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 128 :PIMFKMSIR 1ddlA 127 :PIDVEANLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13034 # 1y8xB.128.88 read from T0287.t2k.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 128 :PIMFKM 1y8xB 433 :TVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13035 # 1gvp.128.41 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 128 :PIMF 1gvp 42 :PVLV T0287 135 :IR 1gvp 49 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13037 # 1ikoP.128.80 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1ikoP)Q118 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKMSI 1ikoP 113 :FTIKF Number of specific fragments extracted= 2 number of extra gaps= 2 total=13039 # 1wmxA.128.132 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIR 1wmxA 138 :IPLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=13041 # 2d9rA.128.20 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSIR 2d9rA 26 :AIIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13043 # 1qexA.128.156 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFK 1qexA 157 :TSVWN T0287 134 :SIR 1qexA 163 :SIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13045 # 2bjqA.128.42 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 128 :PIMFKM 2bjqA 43 :PIHGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13046 # 1flmA.128.25 read from T0287.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SIR 1flmA 32 :WNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13048 # 1v05A.128.23 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :P 1v05A 2653 :K T0287 132 :KMSIR 1v05A 2657 :TVDCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13050 # 1crzA.128.284 read from T0287.t2k.many.frag # found chain 1crzA in template set T0287 128 :PIMFKMSIR 1crzA 291 :PQVYKVNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13051 # 1b7yA.128.263 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)S134 (1b7yA)W270 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFKM 1b7yA 264 :GAQFAV T0287 135 :IR 1b7yA 271 :WP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13053 # 2fojA.128.17 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2fojA 69 :ATFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13054 # 1mspA.128.66 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1mspA 68 :VLMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13055 # 2bzgA.128.114 read from T0287.t2k.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)P128 (2bzgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2bzgA 129 :SLYCCSIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=13056 # 1ttwA.128.46 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)M133 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ttwA)A54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 132 :K 1ttwA 51 :F T0287 134 :S 1ttwA 53 :R Number of specific fragments extracted= 3 number of extra gaps= 4 total=13059 # 1zsqA.128.52 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :MSIR 1zsqA 127 :ASLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13061 # 1ogoX.128.156 read from T0287.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1ogoX 158 :RKFSVEFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13062 # 1mwpA.128.63 read from T0287.t2k.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 128 :PIMFK 1mwpA 91 :PVTIQ T0287 134 :SIR 1mwpA 97 :WCK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13064 # 2f15A.128.21 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)P128 (2f15A)E89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 T0287 129 :IM 2f15A 90 :VF T0287 133 :MSIR 2f15A 94 :GSFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=13066 # 1uh4A.128.588 read from T0287.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)M133 (1uh4A)V594 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFK 1uh4A 589 :SHTVN T0287 134 :SIR 1uh4A 595 :PVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=13068 # 2cy7A.128.305 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 128 :PIMFKMSIR 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13069 # 1vajA.128.113 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 128 :PIMFKMSIR 1vajA 114 :PELIEGPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13070 # 1te0A.129.305 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :E 1te0A 350 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=13072 # 1pgl2.129.294 read from T0287.t2k.many.frag # found chain 1pgl2 in template set T0287 129 :IMFKMSIRE 1pgl2 295 :VVLKFSQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13073 # 1gnyA.129.105 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K132 (1gnyA)T199 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1gnyA)T201 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMF 1gnyA 196 :LTL T0287 133 :M 1gnyA 200 :C T0287 135 :IRE 1gnyA 202 :IDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=13076 # 1l6pA.129.80 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMF 1l6pA 81 :LTL T0287 133 :MSIRE 1l6pA 85 :VTINQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13078 # 1dkiA.129.201 read from T0287.t2k.many.frag # found chain 1dkiA in training set T0287 129 :IMFKMSIRE 1dkiA 84 :KNLFAAIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=13079 # 1quqB.129.24 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1quqB 25 :VCFV T0287 134 :SIRE 1quqB 30 :RLEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13081 # 1ddlA.129.127 read from T0287.t2k.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IMF 1ddlA 128 :IDV T0287 133 :MS 1ddlA 132 :AN T0287 136 :RE 1ddlA 135 :TN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13084 # 1qexA.129.157 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1qexA 158 :SVWNYSI T0287 137 :E 1qexA 166 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=13086 # 2d9rA.129.21 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 129 :IM 2d9rA 22 :IE T0287 133 :MSIRE 2d9rA 26 :AIIRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13088 # 1v05A.129.24 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIRE 1v05A 2657 :TVDCSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13089 # 2cy7A.129.306 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 129 :IMFKMSIRE 2cy7A 304 :PPCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13090 # 1gvp.129.42 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)E137 (1gvp)E51 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFK 1gvp 43 :VLVK T0287 135 :IR 1gvp 49 :LD Number of specific fragments extracted= 2 number of extra gaps= 2 total=13092 # 1ikoP.129.81 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ikoP 111 :V T0287 131 :FKMSIRE 1ikoP 113 :FTIKFQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13094 # 1mspA.129.67 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)E137 (1mspA)T76 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1mspA 68 :VLMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13095 # 1dg6A.129.129 read from T0287.t2k.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1dg6A)N228 T0287 129 :IMFKMSI 1dg6A 220 :ILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13096 # 1b7yA.129.264 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K132 (1b7yA)A268 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMF 1b7yA 265 :AQF T0287 133 :MSIRE 1b7yA 269 :VWWPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13098 # 1wmxA.129.133 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIRE 1wmxA 138 :IPLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13100 # 2fojA.129.18 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2fojA 69 :ATFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13101 # 2f15A.129.22 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 133 :MSIR 2f15A 94 :GSFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=13103 # 1ng0A.129.179 read from T0287.t2k.many.frag # found chain 1ng0A in template set T0287 129 :IMFKMSIRE 1ng0A 180 :VTSALPCDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13104 # 1vajA.129.114 read from T0287.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)K132 (1vajA)E118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :IMF 1vajA 115 :ELI T0287 134 :SIRE 1vajA 120 :PPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13106 # 1ttwA.129.47 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 132 :KMSI 1ttwA 51 :FMRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13108 # 1ntvA.129.81 read from T0287.t2k.many.frag # found chain 1ntvA in training set T0287 129 :IMFKMSIRE 1ntvA 104 :LQHHHAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13109 # 1wyzA.129.206 read from T0287.t2k.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1wyzA 207 :FIQT T0287 134 :SIRE 1wyzA 212 :TVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13111 # 1wthD.129.83 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1wthD 84 :KTRIYGCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13112 # 2bzgA.129.115 read from T0287.t2k.many.frag # found chain 2bzgA in template set T0287 129 :IMFKMSIRE 2bzgA 129 :SLYCCSIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13113 # 2bjqA.129.43 read from T0287.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 Warning: unaligning (T0287)E137 (2bjqA)N52 because L (left) conformation "forbidden" or filtered. T0287 129 :IMFKMS 2bjqA 44 :IHGRAW Number of specific fragments extracted= 1 number of extra gaps= 1 total=13114 # 1crzA.129.285 read from T0287.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)E137 (1crzA)G300 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1crzA 292 :QVYKVNIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13115 # 2bvcA.129.40 read from T0287.t2k.many.frag # found chain 2bvcA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2bvcA)F35 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2bvcA)F35 T0287 129 :I 2bvcA 33 :Q T0287 132 :KMSIRE 2bvcA 36 :TIPASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13117 # 1c8nA.129.202 read from T0287.t2k.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M133 (1c8nA)V207 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFK 1c8nA 203 :IYVD T0287 134 :SIRE 1c8nA 208 :DVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13119 # 1te0A.130.306 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=13121 # 1pgl2.130.295 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 130 :MFKMS 1pgl2 296 :VLKFS T0287 136 :REM 1pgl2 302 :EEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13123 # 1l6pA.130.81 read from T0287.t2k.many.frag # found chain 1l6pA in training set T0287 130 :MFKMSIREM 1l6pA 82 :TLPVTINQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13124 # 1gnyA.130.106 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)E137 (1gnyA)E204 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1gnyA 197 :TLTCTID T0287 138 :M 1gnyA 205 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=13126 # 1dkiA.130.202 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)K132 (1dkiA)F87 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MF 1dkiA 85 :NL T0287 133 :MSIREM 1dkiA 88 :AAISTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13128 # 1ddlA.130.128 read from T0287.t2k.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MF 1ddlA 129 :DV T0287 133 :MSIREM 1ddlA 132 :ANLTNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13130 # 2cy7A.130.307 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 130 :MFKMSIREM 2cy7A 305 :PCRMSIAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13131 # 1quqB.130.25 read from T0287.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)K132 (1quqB)V28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MF 1quqB 26 :CF T0287 134 :SIREM 1quqB 30 :RLEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13133 # 1vajA.130.115 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 130 :MFKMSIREM 1vajA 116 :LIEGPPEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=13134 # 2f15A.130.23 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2f15A)N97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 130 :M 2f15A 91 :F T0287 134 :SI 2f15A 95 :SF Number of specific fragments extracted= 2 number of extra gaps= 2 total=13136 # 1qexA.130.158 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1qexA 159 :VWN T0287 134 :SIREM 1qexA 163 :SIESM Number of specific fragments extracted= 2 number of extra gaps= 1 total=13138 # 1b7yA.130.265 read from T0287.t2k.many.frag # found chain 1b7yA in template set T0287 130 :MFKMSIREM 1b7yA 266 :QFAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13139 # 1ng0A.130.180 read from T0287.t2k.many.frag # found chain 1ng0A in template set T0287 130 :MFKMSIREM 1ng0A 181 :TSALPCDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13140 # 1mspA.130.68 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIRE 1mspA 69 :LMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=13141 # 1v05A.130.25 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIREM 1v05A 2657 :TVDCSKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13142 # 1gvp.130.43 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFK 1gvp 44 :LVK T0287 135 :IRE 1gvp 49 :LDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=13144 # 1wthD.130.84 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)S134 (1wthD)G89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKM 1wthD 85 :TRIY T0287 135 :IR 1wthD 90 :CK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=13147 # 1ikoP.130.82 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1ikoP 113 :FTIKFQEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=13148 # 2fojA.130.19 read from T0287.t2k.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 2fojA 70 :TFQFTVE T0287 138 :M 2fojA 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=13150 # 1c8nA.130.203 read from T0287.t2k.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M130 (1c8nA)Y204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1c8nA)F212 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1c8nA 205 :VDVDVTR Number of specific fragments extracted= 1 number of extra gaps= 2 total=13151 # 1wmxA.130.134 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 130 :M 1wmxA 135 :H T0287 133 :MSIREM 1wmxA 138 :IPLRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13153 # 2d9rA.130.22 read from T0287.t2k.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 130 :M 2d9rA 23 :E T0287 133 :MSIREM 2d9rA 26 :AIIRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13155 # 1wyzA.130.207 read from T0287.t2k.many.frag # found chain 1wyzA in template set T0287 130 :MFKMSIREM 1wyzA 208 :IQTRTVKDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=13156 # 1ntvA.130.82 read from T0287.t2k.many.frag # found chain 1ntvA in training set T0287 130 :MFKMSIREM 1ntvA 105 :QHHHAVHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13157 # 1ttwA.130.48 read from T0287.t2k.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)M133 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)T58 T0287 132 :K 1ttwA 51 :F T0287 134 :SI 1ttwA 53 :RA Number of specific fragments extracted= 2 number of extra gaps= 3 total=13159 # 1nls.130.61 read from T0287.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 T0287 130 :MFKM 1nls 62 :SAVV T0287 136 :REM 1nls 68 :PNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13161 # 1msc.130.42 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 130 :MFKMSI 1msc 43 :KVTCSV T0287 138 :M 1msc 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=13163 # 1gmeA.130.55 read from T0287.t2k.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1gmeA 56 :VFKADLP T0287 138 :M 1gmeA 64 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=13165 # 1ve2A.130.194 read from T0287.t2k.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)M133 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1ve2A 195 :VRL T0287 134 :SIREM 1ve2A 199 :RVEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13167 # 1e2wA.130.190 read from T0287.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)M130 (1e2wA)G191 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1e2wA 192 :FEVSIEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13168 # 1l6pA.131.82 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1l6pA 83 :LPVTINQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13169 # 1pgl2.131.296 read from T0287.t2k.many.frag # found chain 1pgl2 in template set T0287 131 :FKMSIREMD 1pgl2 297 :LKFSQEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13170 # 1te0A.131.307 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=13172 # 1gnyA.131.107 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)R136 (1gnyA)D203 because D (zeta) conformation "forbidden" or filtered. T0287 131 :FKMSI 1gnyA 198 :LTCTI T0287 137 :EMD 1gnyA 204 :EDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13174 # 2cy7A.131.308 read from T0287.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)M138 (2cy7A)L313 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIRE 2cy7A 306 :CRMSIAE T0287 139 :D 2cy7A 314 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=13176 # 2f15A.131.24 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)R136 (2f15A)N97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 133 :MSI 2f15A 94 :GSF T0287 138 :MD 2f15A 99 :WS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13178 # 1ng0A.131.181 read from T0287.t2k.many.frag # found chain 1ng0A in template set T0287 131 :FKMSIREMD 1ng0A 182 :SALPCDEFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13179 # 1vajA.131.116 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 131 :FKMSIREMD 1vajA 117 :IEGPPEERP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13180 # 1bco.131.285 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1bco 533 :VR T0287 134 :SIREMD 1bco 536 :DPQQLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13182 # 1qexA.131.159 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1qexA 160 :WN T0287 134 :SI 1qexA 163 :SI T0287 137 :EMD 1qexA 166 :SMF Number of specific fragments extracted= 3 number of extra gaps= 2 total=13185 # 1ddlA.131.129 read from T0287.t2k.many.frag # found chain 1ddlA in template set T0287 131 :FKMSIREMD 1ddlA 130 :VEANLTNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13186 # 1mspA.131.69 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)E137 (1mspA)T76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIR 1mspA 70 :MAVSCD T0287 139 :D 1mspA 78 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=13188 # 1c8nA.131.204 read from T0287.t2k.many.frag # found chain 1c8nA in template set T0287 131 :FKMSIREMD 1c8nA 205 :VDVDVTRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13189 # 1dkiA.131.203 read from T0287.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)M138 (1dkiA)R93 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1dkiA 86 :LFAAIST T0287 139 :D 1dkiA 94 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=13191 # 1c96A.131.309 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 T0287 131 :FKMSIREM 1c96A 311 :IEINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13192 # 1e2wA.131.191 read from T0287.t2k.many.frag # found chain 1e2wA in training set T0287 131 :FKMSIREMD 1e2wA 192 :FEVSIEKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13193 # 1wthD.131.85 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIR 1wthD 86 :RIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=13195 # 1msc.131.43 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 131 :FKMSI 1msc 44 :VTCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13197 # 1b7yA.131.266 read from T0287.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)D139 (1b7yA)G275 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1b7yA 267 :FAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13198 # 1wyzA.131.208 read from T0287.t2k.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1wyzA 209 :QT T0287 134 :SIREMD 1wyzA 212 :TVKDWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13200 # 1xt5A.131.72 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1xt5A)Y73 T0287 132 :KMSIREMD 1xt5A 74 :KESFGDFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13201 # 1nls.131.62 read from T0287.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0287)K132 (1nls)V64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 Warning: unaligning (T0287)R136 (1nls)P68 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :F 1nls 63 :A T0287 133 :M 1nls 65 :V T0287 137 :EMD 1nls 69 :NAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=13204 # 1gvp.131.44 read from T0287.t2k.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 131 :FK 1gvp 45 :VK T0287 135 :IREMD 1gvp 49 :LDEGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13206 # 1gmeA.131.56 read from T0287.t2k.many.frag # found chain 1gmeA in template set T0287 131 :FKMSIREMD 1gmeA 57 :FKADLPGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13207 # 1wmxA.131.135 read from T0287.t2k.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 133 :MSIREMD 1wmxA 138 :IPLRDLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=13208 # 1v05A.131.26 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 131 :FKMSIREMD 1v05A 2656 :FTVDCSKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13209 # 1s28A.131.53 read from T0287.t2k.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)S134 (1s28A)D57 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :FKM 1s28A 54 :FLS T0287 135 :I 1s28A 58 :I T0287 137 :EMD 1s28A 60 :VID Number of specific fragments extracted= 3 number of extra gaps= 2 total=13212 # 1quqB.131.26 read from T0287.t2k.many.frag # found chain 1quqB in template set T0287 131 :FKMSIREMD 1quqB 27 :FVGRLEKIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=13213 # 1kq1A.131.31 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1kq1A 32 :MKGVIEE T0287 139 :D 1kq1A 40 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=13215 # 1gpqA.131.80 read from T0287.t2k.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)K132 (1gpqA)F82 because E (beta_S) conformation "forbidden" or filtered. T0287 131 :F 1gpqA 81 :L T0287 133 :MSIREMD 1gpqA 83 :STIDEKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13217 # 1l6pA.132.83 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIR 1l6pA 84 :PVTIN T0287 138 :M 1l6pA 90 :A T0287 140 :S 1l6pA 92 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13220 # 1bco.132.286 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 132 :KMSIREMDS 1bco 534 :RFDPQQLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13221 # 2cy7A.132.309 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 132 :KMSIREMDS 2cy7A 307 :RMSIAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13222 # 2f15A.132.25 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2f15A)N97 because G (3-10) conformation "forbidden" or filtered. T0287 134 :SI 2f15A 95 :SF T0287 137 :EMDS 2f15A 98 :NWST Number of specific fragments extracted= 2 number of extra gaps= 2 total=13224 # 1gnyA.132.108 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1gnyA 199 :TCTIDEDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13225 # 1te0A.132.308 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)E137 (1te0A)E350 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 T0287 132 :KMS 1te0A 345 :QVT T0287 138 :M 1te0A 351 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=13227 # 1vajA.132.117 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 132 :KMSIREMDS 1vajA 118 :EGPPEERPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13228 # 1ng0A.132.182 read from T0287.t2k.many.frag # found chain 1ng0A in template set T0287 132 :KMSIREMDS 1ng0A 183 :ALPCDEFSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13229 # 1pgl2.132.297 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)S140 (1pgl2)T306 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1pgl2 298 :KFSQEEFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13230 # 1e2wA.132.192 read from T0287.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)K132 (1e2wA)E193 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1e2wA 194 :VSIEKANG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13231 # 1xt5A.132.73 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EMDS 1xt5A 79 :DFLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13233 # 1h6lA.132.171 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)K132 (1h6lA)K200 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1h6lA 201 :VRAFKMNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=13234 # 1luzA.132.15 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :K 1luzA 16 :K T0287 134 :SI 1luzA 18 :RV T0287 137 :EMD 1luzA 21 :EKD Number of specific fragments extracted= 3 number of extra gaps= 3 total=13237 # 1c96A.132.310 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)M138 (1c96A)L318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 132 :KMSIRE 1c96A 312 :EINLSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13238 # 1qexA.132.160 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1qexA 161 :NYSI T0287 137 :EMD 1qexA 166 :SMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=13240 # 1hx6A.132.359 read from T0287.t2k.many.frag # found chain 1hx6A in training set T0287 132 :KMSIREMDS 1hx6A 361 :VVNPKTVNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13241 # 1kq1A.132.32 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIRE 1kq1A 33 :KGVIEE T0287 139 :DS 1kq1A 40 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13243 # 1wyzA.132.209 read from T0287.t2k.many.frag # found chain 1wyzA in template set T0287 132 :KMSIREMDS 1wyzA 210 :TRTVKDWKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13244 # 1y4wA.132.335 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1y4wA 355 :HMALKTI T0287 140 :S 1y4wA 363 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=13246 # 2airB.132.123 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2airB)A131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSIRE 2airB 124 :SFAVRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13247 # 1s28A.132.54 read from T0287.t2k.many.frag # found chain 1s28A in template set T0287 132 :KMSIREMDS 1s28A 55 :LSDIGVIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13248 # 1wthD.132.86 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIR 1wthD 87 :IYGCK T0287 138 :MDS 1wthD 93 :FSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13250 # 1msc.132.44 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)K132 (1msc)T45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 T0287 133 :MSI 1msc 46 :CSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 3 total=13252 # 1gpqA.132.81 read from T0287.t2k.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)R136 (1gpqA)D86 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSI 1gpqA 82 :FSTI T0287 137 :EMD 1gpqA 87 :EKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=13254 # 1ddlA.132.130 read from T0287.t2k.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)I135 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1ddlA)T135 because G (3-10) conformation "forbidden" or filtered. T0287 132 :KMS 1ddlA 131 :EAN T0287 137 :EMDS 1ddlA 136 :NLNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13256 # 1c8nA.132.205 read from T0287.t2k.many.frag # found chain 1c8nA in template set T0287 132 :KMSIREMDS 1c8nA 206 :DVDVTRFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13257 # 1mspA.132.70 read from T0287.t2k.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)E137 (1mspA)T76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1mspA)N78 because D (zeta) conformation "forbidden" or filtered. T0287 132 :KMSIR 1mspA 71 :AVSCD T0287 138 :M 1mspA 77 :F T0287 140 :S 1mspA 79 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13260 # 1s3rA.132.261 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 132 :KMSIREMDS 1s3rA 259 :TASVDSPNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13261 # 1ve2A.132.196 read from T0287.t2k.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)M133 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0287 132 :K 1ve2A 197 :L T0287 134 :SIREM 1ve2A 199 :RVEDL T0287 140 :S 1ve2A 205 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=13264 # 2ayh.132.120 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)K132 (2ayh)N121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (2ayh)Y122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIR 2ayh 123 :YTN T0287 138 :M 2ayh 127 :V T0287 140 :S 2ayh 129 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=13267 # 1bco.133.287 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 133 :MSIREMDSQ 1bco 535 :FDPQQLHST Number of specific fragments extracted= 1 number of extra gaps= 0 total=13268 # 1l6pA.133.84 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREM 1l6pA 85 :VTINQA T0287 140 :S 1l6pA 92 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=13270 # 2f15A.133.26 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)R136 (2f15A)N97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 133 :MSI 2f15A 94 :GSF T0287 138 :MDSQ 2f15A 99 :WSTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13272 # 1luzA.133.16 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMDS 1luzA 18 :RVYEKDY Number of specific fragments extracted= 1 number of extra gaps= 2 total=13273 # 1h6lA.133.172 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSI 1h6lA 201 :VRA T0287 137 :EMDSQ 1h6lA 205 :KMNSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13275 # 2cy7A.133.310 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 133 :MSIREMDSQ 2cy7A 308 :MSIAELDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13276 # 1xt5A.133.74 read from T0287.t2k.many.frag # found chain 1xt5A in template set T0287 133 :MSIREMDSQ 1xt5A 75 :ESFGDFLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13277 # 1vajA.133.118 read from T0287.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMDSQ 1vajA 120 :PPEERPRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13278 # 1y4wA.133.336 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREM 1y4wA 356 :MALKTI T0287 141 :Q 1y4wA 364 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=13280 # 1hx6A.133.360 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)S140 (1hx6A)Q369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1hx6A 362 :VNPKTVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13281 # 1s3rA.133.262 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIR 1s3rA 260 :ASVD T0287 138 :MDSQ 1s3rA 265 :PNSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13283 # 1te0A.133.309 read from T0287.t2k.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0287)Q141 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0287 133 :MS 1te0A 346 :VT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=13285 # 1gnyA.133.109 read from T0287.t2k.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1gnyA 200 :CTIDEDD T0287 141 :Q 1gnyA 208 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=13287 # 1kq1A.133.33 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMDSQ 1kq1A 35 :VIEEYDKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=13288 # 1c96A.133.311 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 133 :MSIREM 1c96A 313 :INLSEL T0287 141 :Q 1c96A 321 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=13290 # 2airB.133.124 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIRE 2airB 125 :FAVRK T0287 139 :DS 2airB 131 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=13292 # 1oygA.133.170 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 T0287 133 :MSIRE 1oygA 197 :VNVSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13294 # 1e2wA.133.193 read from T0287.t2k.many.frag # found chain 1e2wA in training set T0287 133 :MSIREMDSQ 1e2wA 194 :VSIEKANGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13295 # 1zpwX.133.63 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E137 (1zpwX)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1zpwX)A70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSIR 1zpwX 64 :LRIY T0287 138 :M 1zpwX 69 :V T0287 141 :Q 1zpwX 72 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=13298 # 1ng0A.133.183 read from T0287.t2k.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)Q141 (1ng0A)K192 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1ng0A 184 :LPCDEFSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13299 # 1pgl2.133.298 read from T0287.t2k.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1pgl2)T306 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MS 1pgl2 299 :FS T0287 136 :REMD 1pgl2 302 :EEFL T0287 141 :Q 1pgl2 307 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13302 # 1b66A.133.124 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIRE 1b66A 129 :VKVYE T0287 139 :DSQ 1b66A 135 :DNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13304 # 1msc.133.45 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 T0287 133 :MSI 1msc 46 :CSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13306 # 1mkfA.133.319 read from T0287.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1mkfA 320 :LQMTSHD T0287 141 :Q 1mkfA 328 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=13308 # 1obdA.133.219 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1obdA 220 :FGIDEKT T0287 141 :Q 1obdA 228 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=13310 # 1gpqA.133.82 read from T0287.t2k.many.frag # found chain 1gpqA in template set T0287 133 :MSIREMDSQ 1gpqA 83 :STIDEKTSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13311 # 2ayh.133.121 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSI 2ayh 122 :YYT T0287 138 :MD 2ayh 127 :VG T0287 141 :Q 2ayh 130 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=13314 # 1qexA.133.161 read from T0287.t2k.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)D139 (1qexA)F168 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREM 1qexA 162 :YSIESM T0287 140 :SQ 1qexA 169 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13316 # 1wthD.133.87 read from T0287.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wthD)I104 T0287 133 :MSIR 1wthD 88 :YGCK T0287 138 :MDS 1wthD 93 :FSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13318 # 1s28A.133.55 read from T0287.t2k.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)S134 (1s28A)D57 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :M 1s28A 56 :S T0287 135 :I 1s28A 58 :I T0287 137 :EMDSQ 1s28A 60 :VIDNL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13321 # 1bco.134.288 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 134 :SIREMDSQI 1bco 536 :DPQQLHSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13322 # 1luzA.134.17 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1luzA 18 :RV T0287 137 :EMD 1luzA 21 :EKD T0287 142 :I 1luzA 26 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=13325 # 1h6lA.134.173 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1h6lA 202 :RA T0287 137 :EMDSQI 1h6lA 205 :KMNSQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13327 # 2f15A.134.27 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SIRE 2f15A 95 :SFNN T0287 139 :DS 2f15A 100 :ST T0287 142 :I 2f15A 103 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=13330 # 1xt5A.134.75 read from T0287.t2k.many.frag # found chain 1xt5A in template set T0287 134 :SIREMDSQI 1xt5A 76 :SFGDFLGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13331 # 1oygA.134.171 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 134 :SIREMDS 1oygA 198 :NVSASDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=13332 # 1zpwX.134.64 read from T0287.t2k.many.frag # found chain 1zpwX in template set T0287 134 :SIREMDSQI 1zpwX 65 :RIYPVAGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13333 # 1vajA.134.119 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 134 :SIREMDSQI 1vajA 120 :PPEERPRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13334 # 1hx6A.134.361 read from T0287.t2k.many.frag # found chain 1hx6A in training set T0287 134 :SIREMDSQI 1hx6A 363 :NPKTVNQNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13335 # 1y4wA.134.337 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 140 :SQI 1y4wA 363 :SKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13337 # 1s3rA.134.263 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 134 :SIREMDSQI 1s3rA 261 :SVDSPNSPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13338 # 2cy7A.134.311 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 134 :SIREMDSQI 2cy7A 309 :SIAELDPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13339 # 1l6pA.134.85 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)S140 (1l6pA)A92 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SIREMD 1l6pA 86 :TINQAS T0287 141 :QI 1l6pA 93 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13341 # 1b66A.134.125 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1b66A 130 :KVYE T0287 139 :DSQI 1b66A 135 :DNNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13343 # 1obdA.134.220 read from T0287.t2k.many.frag # found chain 1obdA in training set T0287 134 :SIREMDSQI 1obdA 221 :GIDEKTNEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13344 # 2airB.134.125 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIRE 2airB 126 :AVRK T0287 139 :D 2airB 131 :A T0287 141 :QI 2airB 133 :DI Number of specific fragments extracted= 3 number of extra gaps= 2 total=13347 # 1mkfA.134.320 read from T0287.t2k.many.frag # found chain 1mkfA in template set T0287 134 :SIREMDSQI 1mkfA 321 :QMTSHDGVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=13348 # 1f00I.134.95 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)S140 (1f00I)G759 because G (3-10) conformation "forbidden" or filtered. T0287 134 :SIREMD 1f00I 753 :TLTIDD T0287 141 :QI 1f00I 760 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13350 # 1l4dB.134.73 read from T0287.t2k.many.frag # found chain 1l4dB in template set T0287 134 :SIREMDSQI 1l4dB 99 :EVIDFASDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13351 # 1gpqA.134.83 read from T0287.t2k.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)Q141 (1gpqA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1gpqA 84 :TIDEKTS T0287 142 :I 1gpqA 92 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=13353 # 1msc.134.46 read from T0287.t2k.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1msc)N55 T0287 134 :SI 1msc 47 :SV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13355 # 1kq1A.134.34 read from T0287.t2k.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 139 :DSQI 1kq1A 40 :DKYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13357 # 1thtA.134.156 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 134 :SIRE 1thtA 157 :PIDE T0287 140 :SQI 1thtA 163 :NDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13359 # 1olzA.134.325 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)Q141 (1olzA)K333 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1olzA 326 :TVEQSHT T0287 142 :I 1olzA 334 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=13361 # 1c96A.134.312 read from T0287.t2k.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 134 :SIREM 1c96A 314 :NLSEL T0287 141 :QI 1c96A 321 :HI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13363 # 1hjrA.134.16 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 T0287 134 :S 1hjrA 17 :V T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13365 # 1k3bA.134.81 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREM 1k3bA 82 :KYKEE T0287 140 :SQI 1k3bA 88 :SKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13367 # 1tzlA.134.285 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :S 1tzlA 287 :V T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :I 1tzlA 295 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=13371 # 1gnyA.134.110 read from T0287.t2k.many.frag # found chain 1gnyA in training set T0287 134 :SIREMDSQI 1gnyA 201 :TIDEDDDKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13372 # 2ayh.134.122 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SI 2ayh 123 :YT T0287 138 :MD 2ayh 127 :VG T0287 141 :QI 2ayh 130 :HE Number of specific fragments extracted= 3 number of extra gaps= 2 total=13375 # 1bco.135.289 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 135 :IREMDSQIE 1bco 537 :PQQLHSTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=13376 # 1xt5A.135.76 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 1xt5A 77 :F T0287 137 :EMD 1xt5A 79 :DFL T0287 141 :QIE 1xt5A 83 :RAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=13379 # 1h6lA.135.174 read from T0287.t2k.many.frag # found chain 1h6lA in training set T0287 135 :IREMDSQIE 1h6lA 203 :AFKMNSQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13380 # 2f15A.135.28 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 135 :IR 2f15A 96 :FN T0287 139 :DSQIE 2f15A 100 :STKIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13382 # 1luzA.135.18 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IR 1luzA 19 :VY T0287 138 :MD 1luzA 22 :KD T0287 142 :IE 1luzA 26 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=13385 # 1oygA.135.172 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)R136 (1oygA)S200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)E143 (1oygA)N207 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :I 1oygA 199 :V T0287 137 :E 1oygA 201 :A T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 3 number of extra gaps= 3 total=13388 # 1zpwX.135.65 read from T0287.t2k.many.frag # found chain 1zpwX in template set T0287 135 :IREMDSQIE 1zpwX 66 :IYPVAGQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13389 # 1hx6A.135.362 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)S140 (1hx6A)Q369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMD 1hx6A 364 :PKTVN T0287 141 :QI 1hx6A 370 :NA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13391 # 1hjrA.135.17 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=13392 # 1vajA.135.120 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 135 :IREMDSQIE 1vajA 121 :PEERPRKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13393 # 1f00I.135.96 read from T0287.t2k.many.frag # found chain 1f00I in template set T0287 135 :IREMDSQIE 1f00I 754 :LTIDDGNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13394 # 1olzA.135.326 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1olzA)V335 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :I 1olzA 327 :V T0287 137 :EMDSQI 1olzA 329 :QSHTKW Number of specific fragments extracted= 2 number of extra gaps= 2 total=13396 # 1s3rA.135.264 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMD 1s3rA 262 :VDSPN T0287 141 :QIE 1s3rA 268 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13398 # 2d0oA.135.474 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 135 :IREMDSQIE 2d0oA 475 :LRHEDGSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13399 # 1l4dB.135.74 read from T0287.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1l4dB)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IR 1l4dB 100 :VI T0287 138 :MDSQI 1l4dB 103 :FASDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13401 # 1y4wA.135.338 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)E137 (1y4wA)T360 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 135 :IR 1y4wA 358 :LK T0287 138 :M 1y4wA 361 :I T0287 141 :QIE 1y4wA 364 :KAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=13404 # 1mkfA.135.321 read from T0287.t2k.many.frag # found chain 1mkfA in template set T0287 135 :IREMDSQIE 1mkfA 322 :MTSHDGVWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13405 # 1obdA.135.221 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 135 :IREMD 1obdA 222 :IDEKT T0287 141 :QIE 1obdA 228 :EII Number of specific fragments extracted= 2 number of extra gaps= 1 total=13407 # 1b66A.135.126 read from T0287.t2k.many.frag # found chain 1b66A in template set T0287 135 :IREMDSQIE 1b66A 131 :VYETDNNIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13408 # 1tzlA.135.286 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 T0287 137 :EMDSQIE 1tzlA 290 :ALNSEIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13409 # 1obfO.135.221 read from T0287.t2k.many.frag # found chain 1obfO in training set T0287 135 :IREMDSQIE 1obfO 222 :LPELDGKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13410 # 1k3bA.135.82 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1k3bA 83 :YKEE T0287 140 :SQIE 1k3bA 88 :SKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13412 # 1thtA.135.157 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)R136 (1thtA)D159 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 135 :I 1thtA 158 :I T0287 137 :E 1thtA 160 :E T0287 140 :SQIE 1thtA 163 :NDLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=13415 # 2c5qA.135.140 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)M138 (2c5qA)P144 because G (3-10) conformation "forbidden" or filtered. T0287 135 :IRE 2c5qA 141 :SCA T0287 139 :DSQIE 2c5qA 145 :KAVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13417 # 2ayh.135.123 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 2ayh 124 :T T0287 137 :EMD 2ayh 126 :GVG T0287 141 :QIE 2ayh 130 :HEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=13420 # 2airB.135.126 read from T0287.t2k.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IRE 2airB 127 :VRK T0287 139 :D 2airB 131 :A T0287 141 :QIE 2airB 133 :DIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=13423 # 2cy7A.135.312 read from T0287.t2k.many.frag # found chain 2cy7A in template set T0287 135 :IREMDSQIE 2cy7A 310 :IAELDPSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13424 # 1d3yA.135.98 read from T0287.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. T0287 135 :IREM 1d3yA 167 :CTKL T0287 140 :SQIE 1d3yA 172 :TGAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=13426 # 1xmtA.135.29 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. T0287 135 :IRE 1xmtA 30 :MRN T0287 139 :DSQIE 1xmtA 34 :GKVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13428 # 1l6pA.135.86 read from T0287.t2k.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IR 1l6pA 87 :IN T0287 138 :M 1l6pA 90 :A T0287 140 :S 1l6pA 92 :A T0287 142 :IE 1l6pA 94 :AT Number of specific fragments extracted= 4 number of extra gaps= 3 total=13432 # 1bco.136.290 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)Q141 (1bco)T543 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDS 1bco 538 :QQLHS T0287 142 :IEL 1bco 544 :VYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13434 # 1xt5A.136.77 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)E143 (1xt5A)S85 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1xt5A 78 :GDFLGRA T0287 144 :L 1xt5A 86 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=13436 # 1oygA.136.173 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 136 :REMDS 1oygA 200 :SASDS T0287 143 :EL 1oygA 207 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13438 # 1h6lA.136.175 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REMDS 1h6lA 204 :FKMNS T0287 142 :IEL 1h6lA 210 :TEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13440 # 1hjrA.136.18 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=13441 # 2f15A.136.29 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 136 :R 2f15A 97 :N T0287 138 :MDSQIEL 2f15A 99 :WSTKIPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13443 # 1luzA.136.19 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :REMDS 1luzA 20 :YEKDY T0287 142 :IEL 1luzA 26 :LYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13445 # 1zpwX.136.66 read from T0287.t2k.many.frag # found chain 1zpwX in template set T0287 136 :REMDSQIEL 1zpwX 67 :YPVAGQVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13446 # 1f00I.136.97 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E137 (1f00I)I756 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :R 1f00I 755 :T T0287 138 :MDSQIEL 1f00I 757 :DDGNIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13448 # 1olzA.136.327 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1olzA 329 :QSHTKWVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=13449 # 2d0oA.136.475 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)E137 (2d0oA)H477 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2d0oA)S481 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :R 2d0oA 476 :R T0287 138 :MD 2d0oA 478 :ED T0287 142 :IEL 2d0oA 482 :VQF Number of specific fragments extracted= 3 number of extra gaps= 2 total=13452 # 1obdA.136.222 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 136 :REMD 1obdA 223 :DEKT T0287 141 :QIEL 1obdA 228 :EIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13454 # 2c5qA.136.141 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)E143 (2c5qA)K149 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDSQI 2c5qA 142 :CAPKAVV T0287 144 :L 2c5qA 150 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=13456 # 1hx6A.136.363 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :REMDS 1hx6A 365 :KTVNQ T0287 142 :I 1hx6A 371 :A T0287 144 :L 1hx6A 373 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=13459 # 1mkfA.136.322 read from T0287.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :REMD 1mkfA 323 :TSHD T0287 141 :QIEL 1mkfA 328 :VWTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13461 # 1vajA.136.121 read from T0287.t2k.many.frag # found chain 1vajA in template set T0287 136 :REMDSQIEL 1vajA 122 :EERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13462 # 1s3rA.136.265 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :REMD 1s3rA 263 :DSPN T0287 141 :QIEL 1s3rA 268 :PSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13464 # 1l4dB.136.75 read from T0287.t2k.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)D139 (1l4dB)A104 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :REM 1l4dB 101 :IDF T0287 140 :SQIEL 1l4dB 105 :SDATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13466 # 1r6wA.136.12 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 136 :REMDSQIE 1r6wA 11 :IPMDAGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13467 # 1b66A.136.127 read from T0287.t2k.many.frag # found chain 1b66A in template set T0287 136 :REMDSQIEL 1b66A 132 :YETDNNIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13468 # 1k3bA.136.83 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1k3bA 84 :KEE T0287 140 :SQIEL 1k3bA 88 :SKVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13470 # 1ru3A.136.336 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)M138 (1ru3A)G339 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :RE 1ru3A 337 :RK T0287 139 :DSQI 1ru3A 340 :DMHV T0287 144 :L 1ru3A 345 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=13473 # 2ayh.136.124 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MDSQIEL 2ayh 127 :VGGHEKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=13474 # 1rv9A.136.187 read from T0287.t2k.many.frag # found chain 1rv9A in training set T0287 136 :REMDSQIEL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13475 # 1tzlA.136.287 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 T0287 137 :EMDSQIEL 1tzlA 290 :ALNSEIES Number of specific fragments extracted= 1 number of extra gaps= 1 total=13476 # 1q67A.136.184 read from T0287.t2k.many.frag # found chain 1q67A in template set Warning: unaligning (T0287)R136 (1q67A)E185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1q67A)I192 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EMDSQI 1q67A 186 :VKDELV T0287 144 :L 1q67A 193 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=13478 # 1xmtA.136.30 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :RE 1xmtA 31 :RN T0287 140 :SQIEL 1xmtA 35 :KVMDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13480 # 1y4wA.136.339 read from T0287.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1y4wA 359 :KTI T0287 141 :QIEL 1y4wA 364 :KATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13482 # 1uekA.136.41 read from T0287.t2k.many.frag # found chain 1uekA in training set T0287 136 :REMDSQIEL 1uekA 42 :EPVSSGLHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13483 # 1d3yA.136.99 read from T0287.t2k.many.frag # found chain 1d3yA in template set T0287 136 :REMDSQIEL 1d3yA 168 :TKLGTGAYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13484 # 1bco.137.291 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 137 :EMDSQIELY 1bco 539 :QLHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=13485 # 1hjrA.137.19 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=13487 # 1xt5A.137.78 read from T0287.t2k.many.frag # found chain 1xt5A in template set T0287 137 :EMDSQIELY 1xt5A 79 :DFLGRASVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13488 # 2c5qA.137.142 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 137 :EMDSQIELY 2c5qA 143 :APKAVVKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13489 # 1f00I.137.98 read from T0287.t2k.many.frag # found chain 1f00I in template set T0287 137 :EMDSQIELY 1f00I 756 :IDDGNIEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13490 # 2d0oA.137.476 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 137 :EMDSQIELY 2d0oA 477 :HEDGSVQFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13491 # 1h6lA.137.176 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1h6lA 205 :KMN T0287 141 :QIELY 1h6lA 209 :QTEGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=13493 # 1oygA.137.174 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 137 :E 1oygA 201 :A T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13496 # 1r6wA.137.13 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)S140 (1r6wA)A15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 137 :EMD 1r6wA 12 :PMD T0287 141 :QIE 1r6wA 16 :GVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13498 # 1olzA.137.328 read from T0287.t2k.many.frag # found chain 1olzA in template set T0287 137 :EMDSQIELY 1olzA 329 :QSHTKWVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=13499 # 1zpwX.137.67 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E137 (1zpwX)P68 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1zpwX 69 :VAGQVEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13500 # 2f15A.137.30 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=13501 # 1obdA.137.223 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 137 :EMD 1obdA 224 :EKT T0287 141 :QIELY 1obdA 228 :EIILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13503 # 1rv9A.137.188 read from T0287.t2k.many.frag # found chain 1rv9A in training set T0287 137 :EMDSQIELY 1rv9A 189 :EAATAFEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13504 # 1luzA.137.20 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1luzA 21 :EKDY T0287 142 :IELY 1luzA 26 :LYIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=13506 # 1l4dB.137.76 read from T0287.t2k.many.frag # found chain 1l4dB in template set T0287 137 :EMDSQIELY 1l4dB 102 :DFASDATIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13507 # 1s3rA.137.266 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 137 :EMDSQIELY 1s3rA 264 :SPNSPSALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13508 # 1hx6A.137.364 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1hx6A 366 :TVNQ T0287 142 :I 1hx6A 371 :A T0287 144 :LY 1hx6A 373 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13511 # 1ru3A.137.337 read from T0287.t2k.many.frag # found chain 1ru3A in template set T0287 137 :EMDSQIELY 1ru3A 338 :KGDMHVEFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13512 # 1mkfA.137.323 read from T0287.t2k.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. T0287 137 :EM 1mkfA 324 :SH T0287 140 :SQIELY 1mkfA 327 :GVWTST Number of specific fragments extracted= 2 number of extra gaps= 1 total=13514 # 1b66A.137.128 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :E 1b66A 133 :E T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=13516 # 1xmtA.137.31 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1xmtA 34 :GKVM T0287 144 :LY 1xmtA 39 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13518 # 1k3bA.137.84 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)M138 (1k3bA)E86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 137 :E 1k3bA 85 :E T0287 140 :SQIELY 1k3bA 88 :SKVTTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=13520 # 2ayh.137.125 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M138 (2ayh)V127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :E 2ayh 126 :G T0287 141 :QIELY 2ayh 130 :HEKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13522 # 1d3yA.137.100 read from T0287.t2k.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1d3yA)Y175 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EM 1d3yA 169 :KL T0287 140 :SQI 1d3yA 172 :TGA T0287 144 :LY 1d3yA 176 :NI Number of specific fragments extracted= 3 number of extra gaps= 2 total=13525 # 1wubA.137.81 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)D139 (1wubA)S84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. T0287 137 :EM 1wubA 82 :FV T0287 140 :S 1wubA 85 :T T0287 142 :IEL 1wubA 87 :IEP Number of specific fragments extracted= 3 number of extra gaps= 3 total=13528 # 1jiwI.137.62 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E137 (1jiwI)P63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 1jiwI 64 :TPA T0287 142 :IELY 1jiwI 68 :IALL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13530 # 1tzlA.137.288 read from T0287.t2k.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :IELY 1tzlA 295 :IESL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13533 # 1vajA.137.122 read from T0287.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)Y145 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1vajA 123 :ERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=13534 # 1jiwI.137.9 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 137 :EMDSQIELY 1jiwI 10 :DLAGQWTLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13535 # 1bco.138.292 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 138 :MDSQIELYG 1bco 540 :LHSTVYCYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13536 # 2c5qA.138.143 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 138 :MDSQIELYG 2c5qA 144 :PKAVVKAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13537 # 1hjrA.138.20 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL T0287 145 :YG 1hjrA 28 :LG Number of specific fragments extracted= 2 number of extra gaps= 2 total=13539 # 2d0oA.138.477 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 138 :MDSQIELYG 2d0oA 478 :EDGSVQFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13540 # 1r6wA.138.14 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)S140 (1r6wA)A15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 138 :MD 1r6wA 13 :MD T0287 141 :QIE 1r6wA 16 :GVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13542 # 1xt5A.138.79 read from T0287.t2k.many.frag # found chain 1xt5A in template set T0287 138 :MDSQIELYG 1xt5A 80 :FLGRASVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13543 # 1f00I.138.99 read from T0287.t2k.many.frag # found chain 1f00I in template set T0287 138 :MDSQIELYG 1f00I 757 :DDGNIEIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13544 # 1olzA.138.329 read from T0287.t2k.many.frag # found chain 1olzA in template set T0287 138 :MDSQIELYG 1olzA 330 :SHTKWVRYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13545 # 1oygA.138.175 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELYG 1oygA 207 :NING Number of specific fragments extracted= 2 number of extra gaps= 2 total=13547 # 2f15A.138.31 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 2f15A 100 :STKIPLIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=13548 # 1rv9A.138.189 read from T0287.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQI 1rv9A 190 :AATAF T0287 144 :LYG 1rv9A 196 :GIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13550 # 1zpwX.138.68 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1zpwX 69 :VAG T0287 142 :IELYG 1zpwX 73 :VEVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13552 # 1h6lA.138.177 read from T0287.t2k.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1h6lA)A214 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDS 1h6lA 206 :MNS T0287 142 :IELY 1h6lA 210 :TEGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=13554 # 1obdA.138.224 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 138 :MD 1obdA 225 :KT T0287 141 :QIELYG 1obdA 228 :EIILVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13556 # 1s3rA.138.267 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 138 :MDSQIELYG 1s3rA 265 :PNSPSALFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13557 # 1ru3A.138.338 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQI 1ru3A 339 :GDMHV T0287 144 :LYG 1ru3A 345 :FGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13559 # 1luzA.138.21 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1luzA 22 :KD T0287 142 :IELYG 1luzA 26 :LYIYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13561 # 1l4dB.138.77 read from T0287.t2k.many.frag # found chain 1l4dB in template set T0287 138 :MDSQIELYG 1l4dB 103 :FASDATITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13562 # 1ok7A.138.37 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 1ok7A 38 :AD T0287 141 :QIELYG 1ok7A 41 :TLSLTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13564 # 1jiwI.138.63 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 1jiwI 64 :TPA T0287 142 :IELYG 1jiwI 68 :IALLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13566 # 1xmtA.138.32 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1xmtA 34 :GKVM T0287 144 :LYG 1xmtA 39 :LVH Number of specific fragments extracted= 2 number of extra gaps= 2 total=13568 # 2ayh.138.126 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :M 2ayh 127 :V T0287 140 :SQIELYG 2ayh 129 :GHEKVIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13570 # 2bjfA.138.158 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 2bjfA 159 :TKE T0287 142 :IELYG 2bjfA 163 :LNVFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13572 # 1hx6A.138.365 read from T0287.t2k.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hx6A)M375 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1hx6A 367 :VNQ T0287 142 :I 1hx6A 371 :A T0287 144 :LY 1hx6A 373 :LL Number of specific fragments extracted= 3 number of extra gaps= 3 total=13575 # 1b66A.138.129 read from T0287.t2k.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1b66A)K142 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=13576 # 1wubA.138.82 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)Q141 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDS 1wubA 83 :VST T0287 142 :IELY 1wubA 87 :IEPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13578 # 2f6eA.138.16 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)D139 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :M 2f6eA 18 :I T0287 140 :SQIELY 2f6eA 20 :NKNFYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=13580 # 1jiwI.138.10 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 138 :MDSQIELYG 1jiwI 11 :LAGQWTLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13581 # 1ijqA.138.237 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1ijqA 614 :TGSDVNLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13582 # 1k3bA.138.85 read from T0287.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 1k3bA 86 :EG T0287 141 :QIELYG 1k3bA 89 :KVTTYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13584 # 2c5qA.139.144 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 139 :DSQIELYGT 2c5qA 145 :KAVVKAVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13585 # 1bco.139.293 read from T0287.t2k.many.frag # found chain 1bco in template set T0287 139 :DSQIELYGT 1bco 541 :HSTVYCYTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13586 # 2d0oA.139.478 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 139 :D 2d0oA 479 :D T0287 141 :QIELYGT 2d0oA 481 :SVQFFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=13588 # 1hjrA.139.21 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)G146 (1hjrA)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1hjrA)S30 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DSQI 1hjrA 22 :GRQL T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=13590 # 1olzA.139.330 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1olzA)T332 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELY 1olzA 333 :KWVRY T0287 147 :T 1olzA 339 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=13592 # 1r6wA.139.15 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 139 :DSQIE 1r6wA 14 :DAGVV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 2 number of extra gaps= 0 total=13594 Number of alignments=1142 # 1f00I.139.100 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)S140 (1f00I)G759 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1f00I)T766 because G (3-10) conformation "forbidden" or filtered. T0287 139 :D 1f00I 758 :D T0287 141 :QI 1f00I 760 :NI T0287 144 :LYG 1f00I 763 :IVG Number of specific fragments extracted= 3 number of extra gaps= 3 total=13597 # 1rv9A.139.190 read from T0287.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQI 1rv9A 191 :ATAF T0287 144 :LYG 1rv9A 196 :GIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=13599 # 1ru3A.139.339 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)S140 (1ru3A)M341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1ru3A 340 :D T0287 141 :QIEL 1ru3A 342 :HVEF T0287 146 :GT 1ru3A 347 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=13602 # 1ok7A.139.38 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 139 :D 1ok7A 39 :D T0287 141 :QIELYGT 1ok7A 41 :TLSLTGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13604 # 1s3rA.139.268 read from T0287.t2k.many.frag # found chain 1s3rA in template set T0287 139 :DSQIELYGT 1s3rA 266 :NSPSALFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13605 # 1xt5A.139.80 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)L144 (1xt5A)V86 because D (zeta) conformation "forbidden" or filtered. T0287 139 :DSQIE 1xt5A 81 :LGRAS T0287 145 :YGT 1xt5A 87 :ANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13607 # 1jiwI.139.64 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DS 1jiwI 65 :PA T0287 142 :IELYGT 1jiwI 68 :IALLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=13609 # 1oygA.139.176 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELYGT 1oygA 207 :NINGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=13611 # 2f15A.139.32 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 2f15A 100 :ST T0287 142 :IELYGT 2f15A 103 :IPLIKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13613 # 1zpwX.139.69 read from T0287.t2k.many.frag # found chain 1zpwX in template set T0287 139 :DSQIELYGT 1zpwX 70 :AGQVEVLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13614 # 1wubA.139.83 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)Y145 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1wubA)G92 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1wubA 84 :STQIEP T0287 146 :G 1wubA 91 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=13616 # 1ijqA.139.238 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ijqA)E623 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DSQIELY 1ijqA 615 :GSDVNLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13617 # 1xmtA.139.33 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1xmtA 35 :KVMDLVHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=13618 # 1l4dB.139.78 read from T0287.t2k.many.frag # found chain 1l4dB in template set T0287 139 :DSQIELYGT 1l4dB 104 :ASDATITDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13619 # 1hbnB.139.3 read from T0287.t2k.many.frag # found chain 1hbnB in training set T0287 139 :DSQIELYGT 1hbnB 5 :EDKVDLYDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=13620 # 2bjfA.139.159 read from T0287.t2k.many.frag # found chain 2bjfA in template set T0287 139 :DSQIELYGT 2bjfA 160 :KEKLNVFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13621 # 1obdA.139.225 read from T0287.t2k.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 139 :D 1obdA 226 :T T0287 141 :QIELYGT 1obdA 228 :EIILVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13623 # 1luzA.139.22 read from T0287.t2k.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :D 1luzA 23 :D T0287 142 :IELYGT 1luzA 26 :LYIYLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13625 # 1gd0A.139.43 read from T0287.t2k.many.frag # found chain 1gd0A in training set T0287 139 :DSQIELYGT 1gd0A 44 :DQLMAFGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13626 # 1h6lA.139.178 read from T0287.t2k.many.frag # found chain 1h6lA in training set T0287 139 :DSQIELYGT 1h6lA 207 :NSQTEGMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13627 # 2f6eA.139.17 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 139 :D 2f6eA 19 :D T0287 141 :QIELYG 2f6eA 21 :KNFYFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=13629 # 1jiwI.139.11 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1jiwI 12 :A T0287 141 :QIELY 1jiwI 14 :QWTLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=13631 # 1n9eA.139.742 read from T0287.t2k.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)D139 (1n9eA)E743 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1n9eA 744 :SNWEFYGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13632 # 2ayh.139.127 read from T0287.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 2ayh 129 :GHEKVI T0287 147 :T 2ayh 136 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=13634 # 2c5qA.140.145 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 140 :SQIEL 2c5qA 146 :AVVKA T0287 146 :GTN 2c5qA 152 :GTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13636 # 2d0oA.140.479 read from T0287.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 2d0oA 481 :SVQFFSTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=13637 # 1ru3A.140.340 read from T0287.t2k.many.frag # found chain 1ru3A in template set T0287 140 :SQIELYGTN 1ru3A 341 :MHVEFGGGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13638 # 1bco.140.294 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1bco 542 :STVYCY T0287 147 :TN 1bco 549 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=13640 # 1olzA.140.331 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)S140 (1olzA)T332 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1olzA)V335 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1olzA)P340 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 1olzA 333 :KW T0287 144 :LYGT 1olzA 336 :RYNG Number of specific fragments extracted= 2 number of extra gaps= 3 total=13642 # 1rv9A.140.191 read from T0287.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)Y145 (1rv9A)I197 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1rv9A)G198 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIEL 1rv9A 192 :TAFEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13643 # 1hjrA.140.22 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YGTN 1hjrA 28 :LGSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=13645 # 1jiwI.140.65 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 140 :SQIELYGTN 1jiwI 66 :AGIALLERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13646 # 1r6wA.140.16 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 Warning: unaligning (T0287)N148 (1r6wA)R23 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIE 1r6wA 15 :AGVV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=13648 # 1ok7A.140.39 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)E143 (1ok7A)S43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQI 1ok7A 40 :GTL T0287 144 :LY 1ok7A 44 :LT T0287 147 :TN 1ok7A 47 :TD Number of specific fragments extracted= 3 number of extra gaps= 2 total=13651 # 1f00I.140.101 read from T0287.t2k.many.frag # found chain 1f00I in template set T0287 140 :SQIELYGTN 1f00I 759 :GNIEIVGTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=13652 # 1s3rA.140.269 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1s3rA 268 :PSALF T0287 147 :TN 1s3rA 274 :SG Number of specific fragments extracted= 2 number of extra gaps= 2 total=13654 # 1xt5A.140.81 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 141 :QIELY 1xt5A 83 :RASVA T0287 147 :TN 1xt5A 89 :LA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13656 # 1xmtA.140.34 read from T0287.t2k.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)Q141 (1xmtA)V36 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :S 1xmtA 35 :K T0287 142 :IELYGTN 1xmtA 37 :MDLVHTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=13658 # 2f15A.140.33 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 2f15A 101 :T T0287 142 :IELYGTN 2f15A 103 :IPLIKSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13660 # 1gd0A.140.44 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1gd0A 45 :QLMAF T0287 146 :GTN 1gd0A 51 :GSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13662 # 1hbnB.140.4 read from T0287.t2k.many.frag # found chain 1hbnB in training set T0287 140 :SQIELYGTN 1hbnB 6 :DKVDLYDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13663 # 1wubA.140.84 read from T0287.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIELY 1wubA 85 :TQIEPL T0287 147 :TN 1wubA 92 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13665 # 2bjfA.140.160 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)E143 (2bjfA)N164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (2bjfA)V165 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQI 2bjfA 161 :EKL T0287 145 :Y 2bjfA 166 :F T0287 147 :TN 2bjfA 168 :NN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13668 # 1xmkA.140.53 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)S140 (1xmkA)G341 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 2 total=13669 # 1oygA.140.177 read from T0287.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)G146 (1oygA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1oygA 204 :S T0287 143 :ELY 1oygA 207 :NIN T0287 147 :TN 1oygA 211 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=13672 # 1ijqA.140.239 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL T0287 147 :TN 1ijqA 623 :EN Number of specific fragments extracted= 3 number of extra gaps= 2 total=13675 # 1acc.140.537 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)S140 (1acc)G538 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1acc 539 :NLQYQGKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13676 # 1zpwX.140.70 read from T0287.t2k.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1zpwX)E74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1zpwX)G79 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QI 1zpwX 72 :QV T0287 144 :LYGT 1zpwX 75 :VLGV Number of specific fragments extracted= 2 number of extra gaps= 3 total=13678 # 1lpbA.140.24 read from T0287.t2k.many.frag # found chain 1lpbA in template set T0287 140 :SQIELYGTN 1lpbA 25 :SNCCQHDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13679 # 1jiwI.140.12 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELY 1jiwI 14 :QWTLQ T0287 148 :N 1jiwI 21 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=13681 # 1w8kA.140.311 read from T0287.t2k.many.frag # found chain 1w8kA in training set T0287 140 :SQIELYGTN 1w8kA 352 :KKCYIFNTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13682 # 1n9eA.140.743 read from T0287.t2k.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)E143 (1n9eA)E747 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQI 1n9eA 744 :SNW T0287 144 :LYGTN 1n9eA 748 :FYGND Number of specific fragments extracted= 2 number of extra gaps= 1 total=13684 # 2f6eA.140.18 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGT 2f6eA 21 :KNFYFRN Number of specific fragments extracted= 1 number of extra gaps= 2 total=13685 # 1ir6A.140.346 read from T0287.t2k.many.frag # found chain 1ir6A in template set Warning: unaligning (T0287)L144 (1ir6A)R390 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ir6A)G392 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQIE 1ir6A 386 :DLLL T0287 145 :Y 1ir6A 391 :Y T0287 147 :TN 1ir6A 393 :GH Number of specific fragments extracted= 3 number of extra gaps= 2 total=13688 # 2c5qA.141.146 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 141 :QIELYGTNL 2c5qA 147 :VVKAVGTNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13689 # 2d0oA.141.480 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 141 :QIELYGTNL 2d0oA 481 :SVQFFSTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13690 # 1ru3A.141.341 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIEL 1ru3A 342 :HVEF T0287 146 :GTNL 1ru3A 347 :GGKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13692 # 1bco.141.295 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1bco 543 :TVYCYTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13693 # 1jiwI.141.66 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1jiwI 68 :IALLERGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13694 # 1ok7A.141.40 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1ok7A 41 :TLSLTGTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13695 # 1olzA.141.332 read from T0287.t2k.many.frag # found chain 1olzA in template set T0287 141 :QIELYGTNL 1olzA 333 :KWVRYNGPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13696 # 1xmkA.141.54 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=13697 # 1gd0A.141.45 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 141 :QIEL 1gd0A 46 :LMAF T0287 146 :GTNL 1gd0A 51 :GSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13699 # 2bjfA.141.161 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 2bjfA 162 :KLNVF T0287 147 :TNL 2bjfA 168 :NNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13701 # 1lpbA.141.25 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)E143 (1lpbA)C28 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 1lpbA 26 :NC T0287 144 :LYGTNL 1lpbA 29 :QHDTIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13703 # 1s3rA.141.270 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELY 1s3rA 268 :PSALF T0287 147 :T 1s3rA 274 :S T0287 149 :L 1s3rA 276 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=13706 # 1r6wA.141.17 read from T0287.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1r6wA)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 142 :I 1r6wA 17 :V T0287 147 :TNL 1r6wA 22 :RRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13708 # 1xmtA.141.35 read from T0287.t2k.many.frag # found chain 1xmtA in training set T0287 141 :QIELYGTNL 1xmtA 36 :VMDLVHTYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13709 # 1pjxA.141.247 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)I249 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG Number of specific fragments extracted= 1 number of extra gaps= 2 total=13710 # 1acc.141.538 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 141 :QIEL 1acc 539 :NLQY T0287 146 :GTNL 1acc 544 :GKDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13712 # 2f15A.141.34 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 T0287 141 :QIELY 2f15A 102 :KIPLI T0287 147 :TN 2f15A 108 :SH Number of specific fragments extracted= 2 number of extra gaps= 2 total=13714 # 1hbnB.141.5 read from T0287.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 1hbnB 7 :KV T0287 144 :LY 1hbnB 10 :LY T0287 147 :TNL 1hbnB 13 :DRG Number of specific fragments extracted= 3 number of extra gaps= 2 total=13717 # 1se8A.141.104 read from T0287.t2k.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)Q141 (1se8A)R105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1se8A)E107 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1se8A)Q112 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :I 1se8A 106 :M T0287 144 :LYGT 1se8A 108 :QLGT T0287 149 :L 1se8A 113 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=13720 # 1jiwI.141.13 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELYG 1jiwI 14 :QWTLQQ T0287 148 :NL 1jiwI 21 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13722 # 1f00I.141.102 read from T0287.t2k.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)Q141 (1f00I)N760 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1f00I)G767 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :I 1f00I 761 :I T0287 144 :LYGT 1f00I 763 :IVGT T0287 149 :L 1f00I 768 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=13725 # 1rv9A.141.192 read from T0287.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)G146 (1rv9A)G198 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELY 1rv9A 193 :AFEGI T0287 149 :L 1rv9A 201 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=13727 # 1xt5A.141.82 read from T0287.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xt5A)P92 T0287 141 :QIELY 1xt5A 83 :RASVA T0287 147 :TN 1xt5A 89 :LA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13729 # 1w8kA.141.312 read from T0287.t2k.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELY 1w8kA 353 :KCYIF T0287 147 :TNL 1w8kA 359 :TKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13731 # 1hjrA.141.23 read from T0287.t2k.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)T147 (1hjrA)S30 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1hjrA 24 :QL T0287 145 :YG 1hjrA 28 :LG T0287 148 :NL 1hjrA 31 :GC Number of specific fragments extracted= 3 number of extra gaps= 2 total=13734 # 1ijqA.141.240 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)N148 (1ijqA)N624 because L (left) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1ijqA 617 :DVNLLAE T0287 149 :L 1ijqA 625 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=13736 # 1v05A.141.39 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 141 :QIELYGTNL 1v05A 2669 :MVGVHGPKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13737 # 1gxrA.141.246 read from T0287.t2k.many.frag # found chain 1gxrA in training set T0287 141 :QIELYGTNL 1gxrA 680 :NVEVLHVNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=13738 # 1ttuA.141.227 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1ttuA 414 :AF T0287 144 :LYGTNL 1ttuA 417 :ASSTKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=13740 # 1txvA.141.265 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1txvA 266 :AVEILDSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=13741 # 1bco.142.296 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1bco 544 :VYCYTLD T0287 150 :P 1bco 552 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=13743 # 2c5qA.142.147 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 142 :IELYGTNLP 2c5qA 148 :VKAVGTNVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13744 # 1ok7A.142.41 read from T0287.t2k.many.frag # found chain 1ok7A in training set T0287 142 :IELYGTNLP 1ok7A 42 :LSLTGTDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13745 # 1ru3A.142.342 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IEL 1ru3A 343 :VEF T0287 146 :GTNLP 1ru3A 347 :GGKTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13747 # 1jiwI.142.67 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG T0287 150 :P 1jiwI 76 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=13750 # 1xmkA.142.55 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 142 :IELYG 1xmkA 343 :VYRQG T0287 150 :P 1xmkA 351 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=13752 # 2d0oA.142.481 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 142 :IELYGTNLP 2d0oA 482 :VQFFSTPLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13753 # 1gttA.142.188 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELY 1gttA 189 :VRVL T0287 147 :TNLP 1gttA 194 :EGFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13755 # 1lpbA.142.26 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1lpbA 27 :CCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13756 # 1gd0A.142.46 read from T0287.t2k.many.frag # found chain 1gd0A in training set T0287 142 :IELYGTNLP 1gd0A 47 :MAFGGSSEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13757 # 1jiwI.142.14 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E143 (1jiwI)T16 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :I 1jiwI 15 :W T0287 144 :LY 1jiwI 17 :LQ T0287 147 :TNLP 1jiwI 20 :DEAP Number of specific fragments extracted= 3 number of extra gaps= 2 total=13760 # 1pjxA.142.248 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :L 1pjxA 256 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=13762 # 1txvA.142.266 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1txvA 267 :VEILDSY T0287 150 :P 1txvA 275 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=13764 # 2f15A.142.35 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 142 :IELYGT 2f15A 103 :IPLIKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=13765 # 1v05A.142.40 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 142 :IELYGTNLP 1v05A 2670 :VGVHGPKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13766 # 1acc.142.539 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 142 :I 1acc 540 :L T0287 144 :L 1acc 542 :Y T0287 146 :GTNLP 1acc 544 :GKDIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=13769 # 2bjfA.142.162 read from T0287.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)P150 (2bjfA)G171 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 2bjfA 163 :LNVFDNNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=13770 # 1nqeA.142.549 read from T0287.t2k.many.frag # found chain 1nqeA in template set T0287 142 :IELYGTNLP 1nqeA 550 :AVAYPVTSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=13771 # 1ijqA.142.241 read from T0287.t2k.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Y145 (1ijqA)L621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ijqA)L626 because D (zeta) conformation "forbidden" or filtered. T0287 142 :IEL 1ijqA 618 :VNL T0287 146 :GTNL 1ijqA 622 :AENL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13773 # 1olzA.142.333 read from T0287.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)N148 (1olzA)P340 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELYGT 1olzA 334 :WVRYNG T0287 149 :LP 1olzA 341 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13775 # 1k3sA.142.69 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)E143 (1k3sA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1k3sA 70 :I T0287 144 :LYGTNL 1k3sA 72 :ADADNT Number of specific fragments extracted= 2 number of extra gaps= 2 total=13777 # 1gxrA.142.247 read from T0287.t2k.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)E143 (1gxrA)E682 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1gxrA 681 :V T0287 144 :LYGTNLP 1gxrA 683 :VLHVNKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13779 # 1s3rA.142.271 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)P150 (1s3rA)T277 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1s3rA 269 :SALFGSGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=13780 # 1ttuA.142.228 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1ttuA 415 :F T0287 144 :LYGTNL 1ttuA 417 :ASSTKW Number of specific fragments extracted= 2 number of extra gaps= 2 total=13782 # 1hbnB.142.6 read from T0287.t2k.many.frag # found chain 1hbnB in training set T0287 142 :IELYGTNLP 1hbnB 8 :VDLYDDRGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13783 # 1vh5A.142.117 read from T0287.t2k.many.frag # found chain 1vh5A in training set T0287 142 :IELYGTNLP 1vh5A 116 :IEIFDEKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=13784 # 1se8A.142.105 read from T0287.t2k.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)N148 (1se8A)Q112 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELYGT 1se8A 106 :MEQLGT T0287 149 :LP 1se8A 113 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13786 # 1vgjA.142.77 read from T0287.t2k.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)I78 Warning: unaligning (T0287)E143 (1vgjA)G79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1vgjA 80 :VF T0287 147 :T 1vgjA 83 :N Number of specific fragments extracted= 2 number of extra gaps= 3 total=13788 # 1yn3A.142.7 read from T0287.t2k.many.frag # found chain 1yn3A in training set T0287 142 :IELYGTNLP 1yn3A 164 :ITVNGTSQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13789 # 1xi1A.142.291 read from T0287.t2k.many.frag # found chain 1xi1A in template set Warning: unaligning (T0287)N148 (1xi1A)Y298 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELYGT 1xi1A 292 :FELKEG T0287 149 :LP 1xi1A 299 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=13791 # 1ru3A.143.343 read from T0287.t2k.many.frag # found chain 1ru3A in template set T0287 143 :ELYGTNLPL 1ru3A 344 :EFGGGKTPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=13792 # 1xmkA.143.56 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYG 1xmkA 344 :YRQG T0287 150 :PL 1xmkA 351 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13794 # 1ok7A.143.42 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)N148 (1ok7A)D48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGT 1ok7A 43 :SLTGT T0287 149 :LP 1ok7A 49 :LE Number of specific fragments extracted= 2 number of extra gaps= 2 total=13796 # 1bco.143.297 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1bco)D550 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 1bco 546 :CY T0287 147 :T 1bco 549 :L T0287 150 :PL 1bco 552 :RF Number of specific fragments extracted= 3 number of extra gaps= 3 total=13799 # 2c5qA.143.148 read from T0287.t2k.many.frag # found chain 2c5qA in template set T0287 143 :ELYGTNLPL 2c5qA 149 :KAVGTNVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13800 # 1gd0A.143.47 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gd0A)S53 because G (3-10) conformation "forbidden" or filtered. T0287 143 :EL 1gd0A 48 :AF T0287 146 :GT 1gd0A 51 :GS T0287 149 :LPL 1gd0A 54 :EPC Number of specific fragments extracted= 3 number of extra gaps= 2 total=13803 # 1gttA.143.189 read from T0287.t2k.many.frag # found chain 1gttA in training set T0287 143 :ELYGTNLPL 1gttA 190 :RVLAEGFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13804 # 1lpbA.143.27 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1lpbA 28 :CQHDTIL T0287 151 :L 1lpbA 36 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=13806 # 1v05A.143.41 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 143 :ELYGTNLPL 1v05A 2671 :GVHGPKTPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=13807 # 1jiwI.143.15 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1jiwI)E21 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELY 1jiwI 16 :TLQ T0287 149 :LPL 1jiwI 22 :APA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13809 # 1jiwI.143.68 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELY 1jiwI 69 :ALL T0287 147 :TN 1jiwI 73 :RG T0287 150 :PL 1jiwI 76 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=13812 # 2f15A.143.36 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 143 :ELYGT 2f15A 104 :PLIKS T0287 151 :L 2f15A 112 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=13814 # 2d0oA.143.482 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 143 :ELYGTNLPL 2d0oA 483 :QFFSTPLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=13815 # 1acc.143.540 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNLPL 1acc 542 :YQGKDITE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13816 # 1ttuA.143.229 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)T147 (1ttuA)T420 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYG 1ttuA 416 :HASS T0287 148 :NL 1ttuA 421 :KW T0287 151 :L 1ttuA 424 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13819 # 1k3sA.143.70 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)E143 (1k3sA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 1k3sA 72 :ADADNT T0287 151 :L 1k3sA 79 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=13821 # 1vgjA.143.78 read from T0287.t2k.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF T0287 147 :T 1vgjA 83 :N T0287 151 :L 1vgjA 87 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=13824 # 2evrA.143.177 read from T0287.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 2evrA 166 :VFFGTSQ T0287 151 :L 2evrA 174 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=13826 # 1nqeA.143.550 read from T0287.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. T0287 143 :ELY 1nqeA 551 :VAY T0287 147 :TNLPL 1nqeA 555 :VTSHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13828 # 1txvA.143.267 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1txvA 268 :EILDSY T0287 150 :PL 1txvA 275 :QR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13830 # 1pjxA.143.249 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :LPL 1pjxA 256 :GGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=13832 # 2fj8A.143.72 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 T0287 143 :ELYGTN 2fj8A 73 :ICTRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13833 # 1hbnB.143.7 read from T0287.t2k.many.frag # found chain 1hbnB in training set T0287 143 :ELYGTNLPL 1hbnB 9 :DLYDDRGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13834 # 1yn3A.143.8 read from T0287.t2k.many.frag # found chain 1yn3A in training set T0287 143 :ELYGTNLPL 1yn3A 165 :TVNGTSQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13835 # 1ejfA.143.64 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)E143 (1ejfA)K65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ejfA 66 :HKRTDR T0287 151 :L 1ejfA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=13837 # 2f6eA.143.21 read from T0287.t2k.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)E143 (2f6eA)F23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYG 2f6eA 24 :YFR T0287 149 :LPL 2f6eA 29 :LPQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=13839 # 1r5mA.143.132 read from T0287.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)G146 (1r5mA)N248 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELY 1r5mA 245 :RLW T0287 147 :TNLPL 1r5mA 249 :KTGAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13841 # 1cfb.143.111 read from T0287.t2k.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)P150 (1cfb)N728 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1cfb 721 :VGQGTEP T0287 151 :L 1cfb 729 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=13843 # 1i0vA.143.77 read from T0287.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)G146 (1i0vA)N81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1i0vA)N83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1i0vA 78 :VVF T0287 147 :T 1i0vA 82 :E T0287 150 :PL 1i0vA 85 :QL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13846 # 1tif.143.45 read from T0287.t2k.many.frag # found chain 1tif in training set Warning: unaligning (T0287)P150 (1tif)K53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1tif)P54 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1tif 46 :VLVAPNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=13847 # 1gttA.144.190 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 1gttA 191 :VL T0287 147 :T 1gttA 194 :E T0287 149 :LPLL 1gttA 196 :FPPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13850 # 1xmkA.144.57 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 144 :LYG 1xmkA 345 :RQG T0287 150 :PLL 1xmkA 351 :PIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=13852 # 1ru3A.144.344 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :L 1ru3A 345 :F T0287 146 :GTNLPL 1ru3A 347 :GGKTPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=13854 # 1gd0A.144.48 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :L 1gd0A 49 :F T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :L 1gd0A 57 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13857 # 1lpbA.144.28 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :LL 1lpbA 36 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=13859 # 1v05A.144.42 read from T0287.t2k.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)G146 (1v05A)G2674 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LY 1v05A 2672 :VH T0287 147 :TNLPLL 1v05A 2675 :PKTPCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13861 # 1jiwI.144.16 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LY 1jiwI 17 :LQ T0287 148 :NLPLL 1jiwI 21 :EAPAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13863 # 1k3sA.144.71 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGT 1k3sA 72 :ADAD T0287 149 :L 1k3sA 77 :T T0287 151 :LL 1k3sA 79 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=13866 # 1ok7A.144.43 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTN 1ok7A 44 :LTGTD T0287 150 :P 1ok7A 50 :E T0287 152 :L 1ok7A 52 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=13869 # 1bco.144.298 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1bco 546 :CY T0287 147 :TNLPLL 1bco 549 :LDGRFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=13871 # 1ttuA.144.230 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ttuA)T420 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LY 1ttuA 417 :AS T0287 148 :NL 1ttuA 421 :KW T0287 151 :LL 1ttuA 424 :AF Number of specific fragments extracted= 3 number of extra gaps= 2 total=13874 # 2c5qA.144.149 read from T0287.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 144 :LYGT 2c5qA 150 :AVGT T0287 149 :LPLL 2c5qA 155 :VQLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13876 # 1jiwI.144.69 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGTN 1jiwI 70 :LLERG T0287 150 :PLL 1jiwI 76 :LTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13878 # 1acc.144.541 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)L144 (1acc)Y542 because D (zeta) conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1acc 543 :QGKDITEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=13879 # 2fj8A.144.73 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)N148 (2fj8A)N78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 T0287 144 :LYGT 2fj8A 74 :CTRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=13880 # 1wnyA.144.68 read from T0287.t2k.many.frag # found chain 1wnyA in template set T0287 144 :LYGTNLPLL 1wnyA 268 :LLGEGTPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13881 # 2f15A.144.37 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 144 :LY 2f15A 105 :LI T0287 147 :TN 2f15A 108 :SH T0287 151 :LL 2f15A 112 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=13884 # 2d0oA.144.483 read from T0287.t2k.many.frag # found chain 2d0oA in template set T0287 144 :LYGTNLPLL 2d0oA 484 :FFSTPLPPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13885 # 1nh1A.144.167 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 144 :LYGTNLPLL 1nh1A 168 :LHGNVIPLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=13886 # 2evrA.144.178 read from T0287.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)G146 (2evrA)G169 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LY 2evrA 167 :FF T0287 147 :TNL 2evrA 170 :TSQ T0287 151 :LL 2evrA 174 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=13889 # 2jdxA.144.30 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 144 :LYGTNLPLL 2jdxA 68 :SYNEWDPLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13890 # 1txvA.144.268 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1txvA 269 :IL T0287 147 :TN 1txvA 272 :SY T0287 150 :PLL 1txvA 275 :QRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=13893 # 1dmgA.144.167 read from T0287.t2k.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)G146 (1dmgA)G171 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1dmgA)D176 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 1dmgA 169 :LS T0287 147 :TNLP 1dmgA 172 :RNLP T0287 152 :L 1dmgA 177 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=13896 # 1i0vA.144.78 read from T0287.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 144 :LYGTN 1i0vA 79 :VFNEN T0287 150 :PLL 1i0vA 85 :QLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13898 # 1ejfA.144.65 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ejfA 66 :HKRTDR T0287 151 :LL 1ejfA 73 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13900 # 2f6eA.144.22 read from T0287.t2k.many.frag # found chain 2f6eA in template set T0287 144 :LYGTNLPLL 2f6eA 24 :YFRNGLPQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13901 # 1pjxA.144.250 read from T0287.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1pjxA 251 :VFG T0287 149 :L 1pjxA 256 :G T0287 151 :LL 1pjxA 258 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=13904 # 1h4aX.144.155 read from T0287.t2k.many.frag # found chain 1h4aX in training set Warning: unaligning (T0287)Y145 (1h4aX)G158 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1h4aX)N161 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :L 1h4aX 157 :W T0287 146 :GT 1h4aX 159 :AT T0287 149 :LPLL 1h4aX 162 :ARVG Number of specific fragments extracted= 3 number of extra gaps= 2 total=13907 # 1yn3A.144.9 read from T0287.t2k.many.frag # found chain 1yn3A in training set T0287 144 :LYGTNLPLL 1yn3A 166 :VNGTSQNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13908 # 1r5mA.144.133 read from T0287.t2k.many.frag # found chain 1r5mA in training set T0287 144 :LYGTNLPLL 1r5mA 246 :LWNKTGALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13909 # 1gttA.145.191 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :Y 1gttA 192 :L T0287 147 :T 1gttA 194 :E T0287 149 :LPLLK 1gttA 196 :FPPLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=13912 # 1k3sA.145.72 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1k3sA 73 :DADNT T0287 151 :LLK 1k3sA 79 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=13914 # 1xmkA.145.58 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 145 :YG 1xmkA 346 :QG T0287 150 :PLLK 1xmkA 351 :PIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13916 # 1ru3A.145.345 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :K 1ru3A 354 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=13918 # 1gd0A.145.49 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1gd0A 50 :GGSSEP T0287 152 :LK 1gd0A 57 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13920 # 1lpbA.145.29 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1lpbA 30 :HDTIL T0287 151 :LLK 1lpbA 36 :LSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13922 # 1nh1A.145.168 read from T0287.t2k.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)Y145 (1nh1A)H169 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1nh1A 170 :GNVIPLNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=13923 # 1jiwI.145.17 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 145 :YGTNLPLLK 1jiwI 18 :QQDEAPAIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=13924 # 1wnyA.145.69 read from T0287.t2k.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)K153 (1wnyA)K277 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1wnyA 269 :LGEGTPVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13925 # 1jiwI.145.70 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 145 :YGTNLPLLK 1jiwI 71 :LERGGLTLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=13926 # 1bco.145.299 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :Y 1bco 547 :Y T0287 147 :TN 1bco 549 :LD T0287 150 :PLLK 1bco 552 :RFIC Number of specific fragments extracted= 3 number of extra gaps= 2 total=13929 # 1v05A.145.43 read from T0287.t2k.many.frag # found chain 1v05A in training set T0287 145 :YGTNLPLLK 1v05A 2673 :HGPKTPCEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=13930 # 2fj8A.145.74 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 145 :YGTN 2fj8A 75 :TRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=13931 # 2jdxA.145.31 read from T0287.t2k.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 2jdxA 69 :Y T0287 147 :TNLPLLK 2jdxA 71 :EWDPLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13933 # 1ttuA.145.231 read from T0287.t2k.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1ttuA 418 :SSTKW T0287 151 :LLK 1ttuA 424 :AFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13935 # 2f15A.145.38 read from T0287.t2k.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 145 :Y 2f15A 106 :I T0287 147 :TN 2f15A 108 :SH T0287 151 :LLK 2f15A 112 :FVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=13938 # 1tul.145.75 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1tul 76 :VQN T0287 151 :LLK 1tul 82 :DLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=13940 # 1ow1A.145.147 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 145 :YGTNLPLLK 1ow1A 3617 :PGSNQPAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=13941 # 1gsa.145.214 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)Y145 (1gsa)D215 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1gsa 216 :GEPVPYCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=13942 # 1t6aA.145.61 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1t6aA 61 :DGRLYK T0287 153 :K 1t6aA 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=13944 # 1acc.145.542 read from T0287.t2k.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1acc 544 :GKDITEFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=13945 # 1ok7A.145.44 read from T0287.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1ok7A 45 :TGTDLE T0287 152 :LK 1ok7A 52 :EM Number of specific fragments extracted= 2 number of extra gaps= 1 total=13947 # 1cfb.145.133 read from T0287.t2k.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)Y145 (1cfb)N743 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1cfb 744 :APNF T0287 151 :LLK 1cfb 749 :YYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13949 # 1txvA.145.269 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)N148 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGT 1txvA 270 :LDS T0287 150 :PLL 1txvA 275 :QRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13951 # 1i0vA.145.79 read from T0287.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1i0vA)G88 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTN 1i0vA 80 :FNEN T0287 150 :PLL 1i0vA 85 :QLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=13953 # 1l9vA.145.179 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1l9vA 180 :LDQNF T0287 151 :LLK 1l9vA 186 :EYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=13955 # 1ejfA.145.66 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1ejfA 67 :KRTDR T0287 151 :LLK 1ejfA 73 :ILC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13957 # 1yq2A.145.936 read from T0287.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1yq2A)A938 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :Y 1yq2A 936 :D T0287 149 :LPLLK 1yq2A 940 :APWLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=13959 # 2biqA.145.151 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)Y145 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2biqA)G245 Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 148 :NLPLLK 2biqA 248 :RSPILT Number of specific fragments extracted= 2 number of extra gaps= 1 total=13961 # 2evrA.145.179 read from T0287.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 2evrA 168 :FGTSQ T0287 151 :LLK 2evrA 174 :ATH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13963 # 1k3sA.146.73 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GTNL 1k3sA 74 :ADNT T0287 151 :LL 1k3sA 79 :LV T0287 154 :L 1k3sA 82 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=13966 # 1gttA.146.192 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)K153 (1gttA)E200 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1gttA 193 :AEGFPPL T0287 154 :L 1gttA 201 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=13968 # 1l9vA.146.180 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)G146 (1l9vA)D181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKL 1l9vA 186 :EYKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=13970 # 1xmkA.146.59 read from T0287.t2k.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 146 :G 1xmkA 347 :G T0287 150 :PLLKL 1xmkA 351 :PIWHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13972 # 1gd0A.146.50 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :LKL 1gd0A 57 :ALC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13974 # 1ru3A.146.346 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L154 (1ru3A)L355 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1ru3A 347 :GGKTPSFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=13975 # 1ow1A.146.148 read from T0287.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)N148 (1ow1A)N3620 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1ow1A 3618 :GS T0287 149 :LPLLKL 1ow1A 3621 :QPAYVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=13977 # 1kjlA.146.34 read from T0287.t2k.many.frag # found chain 1kjlA in template set T0287 146 :GTNLPLLKL 1kjlA 139 :KPNANRIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=13978 # 2b8mA.146.87 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N87 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=13979 # 1lpbA.146.30 read from T0287.t2k.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1lpbA 31 :DTIL T0287 151 :LLKL 1lpbA 36 :LSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=13981 # 2biqA.146.152 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 146 :GTNLPLLKL 2biqA 246 :MNRSPILTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13982 # 1k8wA.146.298 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. T0287 146 :GTN 1k8wA 286 :GEN T0287 150 :PLLKL 1k8wA 290 :KFIGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=13984 # 1nh1A.146.169 read from T0287.t2k.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)N148 (1nh1A)V172 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GT 1nh1A 170 :GN T0287 149 :LPLLKL 1nh1A 173 :IPLNTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=13986 # 1gsa.146.215 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 146 :GTNLPLLKL 1gsa 216 :GEPVPYCLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13987 # 1jiwI.146.71 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 146 :GTNLPLLKL 1jiwI 72 :ERGGLTLML Number of specific fragments extracted= 1 number of extra gaps= 0 total=13988 # 1jiwI.146.18 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 146 :G 1jiwI 19 :Q T0287 148 :NLPLLKL 1jiwI 21 :EAPAICH Number of specific fragments extracted= 2 number of extra gaps= 1 total=13990 # 1ospO.146.74 read from T0287.t2k.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)G146 (1ospO)S91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1ospO)L94 because L (left) conformation "forbidden" or filtered. T0287 147 :TN 1ospO 92 :DD T0287 150 :PLLKL 1ospO 95 :GQTTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=13992 # 1uv4A.146.30 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1uv4A 31 :LTEERGL T0287 154 :L 1uv4A 39 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=13994 # 1bco.146.300 read from T0287.t2k.many.frag # found chain 1bco in template set Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1bco 548 :TLDGRFI T0287 154 :L 1bco 556 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=13996 # 1tul.146.76 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1tul)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GT 1tul 77 :QN T0287 151 :LL 1tul 82 :DL T0287 154 :L 1tul 85 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=13999 # 1o59A.146.118 read from T0287.t2k.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 146 :GTNLPL 1o59A 107 :GNHAPF T0287 154 :L 1o59A 115 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=14001 # 1yq2A.146.937 read from T0287.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)T147 (1yq2A)A938 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 146 :G 1yq2A 937 :R T0287 149 :LPLLKL 1yq2A 940 :APWLRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14003 # 2fj8A.146.75 read from T0287.t2k.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 147 :TN 2fj8A 77 :SN T0287 154 :L 2fj8A 84 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=14005 # 1t6aA.146.62 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)G146 (1t6aA)G62 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1t6aA 63 :RLYK T0287 153 :KL 1t6aA 69 :AI Number of specific fragments extracted= 2 number of extra gaps= 2 total=14007 # 1wnyA.146.70 read from T0287.t2k.many.frag # found chain 1wnyA in template set T0287 146 :GTNLPLLKL 1wnyA 270 :GEGTPVLKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14008 # 1jl0A.146.233 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 146 :GTNLPLLKL 1jl0A 234 :KSDGTYWTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14009 # 1txvA.146.270 read from T0287.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTN 1txvA 271 :DSY T0287 150 :PLL 1txvA 275 :QRL T0287 154 :L 1txvA 279 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=14012 # 1p90A.146.23 read from T0287.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)N148 (1p90A)S124 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1p90A 122 :FG T0287 149 :LPLLKL 1p90A 125 :CLRFLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14014 # 1ejfA.146.67 read from T0287.t2k.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ejfA)C75 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNL 1ejfA 68 :RTDR T0287 151 :LL 1ejfA 73 :IL T0287 154 :L 1ejfA 76 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=14017 # 1v4pA.146.96 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GTNL 1v4pA 97 :PEDV T0287 151 :LLKL 1v4pA 102 :ILKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14019 # 1gttA.147.193 read from T0287.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1gttA 194 :E T0287 149 :LPLLKLF 1gttA 196 :FPPLENP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14021 # 2b8mA.147.88 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=14022 # 1nh1A.147.170 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 147 :TNLPLLKLF 1nh1A 171 :NVIPLNTFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14023 # 1l9vA.147.181 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKLF 1l9vA 186 :EYKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=14025 # 2biqA.147.153 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLF 2biqA 249 :SPILTII Number of specific fragments extracted= 1 number of extra gaps= 1 total=14026 # 1k3sA.147.74 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1k3sA 75 :DNT T0287 151 :LLKLF 1k3sA 79 :LVALY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14028 # 1ow1A.147.149 read from T0287.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)K153 (1ow1A)V3625 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1ow1A 3619 :SNQPAY T0287 154 :LF 1ow1A 3626 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14030 # 1uv4A.147.31 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 147 :TNLP 1uv4A 32 :TEER T0287 152 :LKLF 1uv4A 37 :LRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14032 # 1k8wA.147.299 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1k8wA 287 :EN T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LF 1k8wA 294 :MG Number of specific fragments extracted= 3 number of extra gaps= 2 total=14035 # 1kjlA.147.35 read from T0287.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1kjlA 140 :PNAN T0287 152 :LKLF 1kjlA 145 :IALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14037 # 1v4pA.147.97 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKLF 1v4pA 102 :ILKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14039 # 1ospO.147.75 read from T0287.t2k.many.frag # found chain 1ospO in template set T0287 147 :TNLPLLKLF 1ospO 92 :DDLGQTTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14040 # 1jl0A.147.234 read from T0287.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :TN 1jl0A 235 :SD T0287 150 :PLLKLF 1jl0A 238 :TYWTIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14042 # 2czrA.147.66 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. T0287 147 :TNL 2czrA 59 :KDV T0287 151 :LLKLF 2czrA 63 :GIHIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14044 # 1gsa.147.216 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 147 :TNLPLLKLF 1gsa 217 :EPVPYCLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14045 # 1fjgP.147.11 read from T0287.t2k.many.frag # found chain 1fjgP in template set T0287 147 :TNLPLLKLF 1fjgP 12 :KHNPHYRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14046 # 1jiwI.147.19 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1jiwI)C26 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLPLL 1jiwI 21 :EAPAI T0287 154 :LF 1jiwI 27 :HL Number of specific fragments extracted= 2 number of extra gaps= 2 total=14048 # 1gd0A.147.51 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1gd0A 52 :SSEP T0287 152 :LKLF 1gd0A 57 :ALCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14050 # 1t6aA.147.63 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1t6aA 63 :RLYK T0287 152 :LKLF 1t6aA 68 :MAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14052 # 1cid.147.123 read from T0287.t2k.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 T0287 147 :TNL 1cid 124 :PTS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14054 # 1y12A.147.79 read from T0287.t2k.many.frag # found chain 1y12A in template set T0287 147 :TNLPLLKLF 1y12A 77 :KHYPQAKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14055 # 1tul.147.77 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1tul 78 :N T0287 151 :LLKLF 1tul 82 :DLNAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14057 # 1o59A.147.119 read from T0287.t2k.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)N148 (1o59A)H109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 147 :T 1o59A 108 :N T0287 149 :LPL 1o59A 110 :APF T0287 154 :LF 1o59A 115 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=14060 # 2a2cA.147.421 read from T0287.t2k.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2a2cA)G403 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLF 2a2cA 406 :GCTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=14061 # 2a8eA.147.164 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 2a8eA 165 :KKA T0287 151 :LLKLF 2a8eA 169 :LLCGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14063 # 1p90A.147.24 read from T0287.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1p90A 123 :GSCL T0287 152 :LKLF 1p90A 128 :FLVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14065 # 1ysqA.147.141 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ysqA)V146 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPL 1ysqA 140 :GRVPY T0287 154 :LF 1ysqA 147 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14067 # 1i4wA.147.248 read from T0287.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0287)N148 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0287 147 :T 1i4wA 237 :T T0287 149 :LPLLKLF 1i4wA 239 :GKPIALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14069 # 1ru3A.147.347 read from T0287.t2k.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1ru3A)L355 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPL 1ru3A 348 :GKTPS T0287 153 :K 1ru3A 354 :E T0287 155 :F 1ru3A 356 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=14072 # 1yq2A.147.938 read from T0287.t2k.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1yq2A 938 :A T0287 149 :LPLLKLF 1yq2A 940 :APWLRID Number of specific fragments extracted= 2 number of extra gaps= 1 total=14074 # 2b8mA.148.89 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :V 2b8mA 97 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=14076 # 1nh1A.148.171 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 148 :NLPLLKLFV 1nh1A 172 :VIPLNTFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14077 # 1gttA.148.194 read from T0287.t2k.many.frag # found chain 1gttA in training set T0287 148 :NLPLLKLFV 1gttA 195 :GFPPLENPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14078 # 1l9vA.148.182 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NL 1l9vA 183 :NF T0287 151 :LLKLFV 1l9vA 186 :EYKVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14080 # 2biqA.148.154 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 148 :NLPLLKLFV 2biqA 248 :RSPILTIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14081 # 1uv4A.148.32 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)N148 (1uv4A)E33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 149 :LP 1uv4A 34 :ER T0287 152 :LKLFV 1uv4A 37 :LRVLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=14083 # 1ow1A.148.150 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 148 :NLPLLKLFV 1ow1A 3620 :NQPAYVLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14084 # 1jl0A.148.235 read from T0287.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 148 :N 1jl0A 236 :D T0287 150 :PLLKLFV 1jl0A 238 :TYWTIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14086 # 1k8wA.148.300 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPLL 1k8wA 288 :NGKFI T0287 154 :LFV 1k8wA 294 :MGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14088 # 2a2cA.148.422 read from T0287.t2k.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2a2cA)G406 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2a2cA)T408 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 2a2cA 407 :C T0287 154 :LFV 2a2cA 409 :VSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=14090 # 1gsa.148.217 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1gsa 219 :VPYCLARI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14091 # 1k3sA.148.75 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NL 1k3sA 76 :NT T0287 151 :LLKLFV 1k3sA 79 :LVALYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14093 # 1kjlA.148.36 read from T0287.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLP 1kjlA 141 :NAN T0287 152 :LKLFV 1kjlA 145 :IALDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14095 # 1fjgP.148.12 read from T0287.t2k.many.frag # found chain 1fjgP in template set T0287 148 :NLPLLKLFV 1fjgP 13 :HNPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14096 # 1vr8A.148.56 read from T0287.t2k.many.frag # found chain 1vr8A in training set T0287 148 :NLPLLKLFV 1vr8A 69 :EYGPVFLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14097 # 1v4pA.148.98 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 1v4pA 99 :DV T0287 151 :LLKLFV 1v4pA 102 :ILKVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14099 # 1cid.148.124 read from T0287.t2k.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 T0287 148 :NL 1cid 125 :TS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=14101 # 1tul.148.78 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1tul 82 :DLNAIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=14102 # 2btiA.148.27 read from T0287.t2k.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 2btiA 26 :KG T0287 151 :LLKLFV 2btiA 29 :QVRIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14104 # 1i4wA.148.249 read from T0287.t2k.many.frag # found chain 1i4wA in template set T0287 148 :NLPLLKLFV 1i4wA 238 :KGKPIALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14105 # 2czrA.148.67 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. T0287 148 :NL 2czrA 60 :DV T0287 151 :LLKLFV 2czrA 63 :GIHIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14107 # 1ospO.148.76 read from T0287.t2k.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)N148 (1ospO)D93 because G (3-10) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1ospO 94 :LGQTTLEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=14108 # 1gd0A.148.52 read from T0287.t2k.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gd0A)L58 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLP 1gd0A 53 :SEP T0287 152 :L 1gd0A 57 :A T0287 154 :LFV 1gd0A 59 :CSL Number of specific fragments extracted= 3 number of extra gaps= 2 total=14111 # 1y12A.148.80 read from T0287.t2k.many.frag # found chain 1y12A in template set Warning: unaligning (T0287)N148 (1y12A)H78 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1y12A 79 :YPQAKLTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14112 # 2a8eA.148.165 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 2a8eA 166 :KA T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FV 2a8eA 173 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=14115 # 1f8eA.148.105 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)N148 (1f8eA)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1f8eA)T188 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1f8eA 187 :K T0287 151 :LLKLFV 1f8eA 189 :RMSICI Number of specific fragments extracted= 2 number of extra gaps= 2 total=14117 # 1jiwI.148.20 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 148 :NLPLLKLFV 1jiwI 21 :EAPAICHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14118 # 1sqwA.148.136 read from T0287.t2k.many.frag # found chain 1sqwA in template set T0287 148 :NLPLLKLFV 1sqwA 137 :ADIPLGFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14119 # 1vs0A.148.209 read from T0287.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1vs0A 663 :LLMGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14120 # 1ysqA.148.142 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPL 1ysqA 141 :RVPY T0287 153 :KLFV 1ysqA 146 :VSIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14122 # 1nh1A.149.172 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 149 :LPLLKLFVM 1nh1A 173 :IPLNTFRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14123 # 1l9vA.149.183 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFVM 1l9vA 186 :EYKVTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14125 # 2b8mA.149.90 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :VM 2b8mA 97 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14127 # 1uv4A.149.33 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLL 1uv4A 34 :ERGL T0287 154 :LFV 1uv4A 39 :VLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=14129 # 2biqA.149.155 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 149 :LPLLKLFVM 2biqA 249 :SPILTIITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14130 # 1vr8A.149.57 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)P150 (1vr8A)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 149 :L 1vr8A 70 :Y T0287 151 :LLKLFVM 1vr8A 72 :PVFLYVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14132 # 1ow1A.149.151 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 149 :LPLLKLFVM 1ow1A 3621 :QPAYVLQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14133 # 1k3sA.149.76 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LLK 1k3sA 79 :LVA T0287 155 :FVM 1k3sA 83 :YRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=14136 # 1jl0A.149.236 read from T0287.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 150 :PLLKLFVM 1jl0A 238 :TYWTIAIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=14137 # 1fjgP.149.13 read from T0287.t2k.many.frag # found chain 1fjgP in template set T0287 149 :LPLLKLFVM 1fjgP 14 :NPHYRIVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14138 # 1gsa.149.218 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 149 :LPLLKLFVM 1gsa 219 :VPYCLARIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14139 # 1gttA.149.195 read from T0287.t2k.many.frag # found chain 1gttA in training set T0287 149 :LPLLKLFVM 1gttA 196 :FPPLENPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14140 # 2a8eA.149.166 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2a8eA)C171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LL 2a8eA 169 :LL T0287 155 :FVM 2a8eA 173 :IQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=14143 # 1no5A.149.43 read from T0287.t2k.many.frag # found chain 1no5A in training set T0287 149 :LPLLKLFVM 1no5A 44 :YSDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=14144 # 1v4pA.149.99 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 1v4pA 100 :V T0287 151 :LLKLFVM 1v4pA 102 :ILKVVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14146 # 2btiA.149.28 read from T0287.t2k.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)L149 (2btiA)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVM 2btiA 29 :QVRIGVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=14147 # 1p90A.149.26 read from T0287.t2k.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1p90A 125 :CL T0287 152 :LKLFVM 1p90A 128 :FLVYQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14149 # 1jiwI.149.21 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)M157 (1jiwI)L30 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1jiwI 22 :APAICHLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14150 # 1tul.149.79 read from T0287.t2k.many.frag # found chain 1tul in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1tul)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1tul 82 :DL T0287 154 :LFVM 1tul 85 :AIMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=14152 # 1i4wA.149.250 read from T0287.t2k.many.frag # found chain 1i4wA in template set T0287 149 :LPLLKLFVM 1i4wA 239 :GKPIALVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14153 # 1k8wA.149.301 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLL 1k8wA 289 :GKFI T0287 154 :LFVM 1k8wA 294 :MGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14155 # 2a2cA.149.423 read from T0287.t2k.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLFVM 2a2cA 406 :GCTVSMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=14156 # 1vl7A.149.75 read from T0287.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)K153 (1vl7A)N68 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLL 1vl7A 64 :NPLV T0287 154 :LFVM 1vl7A 69 :VLFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14158 # 1cid.149.125 read from T0287.t2k.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K134 T0287 149 :L 1cid 126 :S T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=14160 # 1vs0A.149.210 read from T0287.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1vs0A)P668 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1vs0A 662 :SLLMGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14161 # 1ftrA.149.69 read from T0287.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1ftrA 70 :RP T0287 152 :LKLFVM 1ftrA 73 :VTIMIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=14163 # 1ry9A.149.107 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1ry9A 96 :E T0287 151 :LLKLFVM 1ry9A 98 :LQLRVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14165 # 1k2xA.149.77 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1k2xA 79 :T T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVM 1k2xA 85 :CVM Number of specific fragments extracted= 3 number of extra gaps= 2 total=14168 # 1kjlA.149.37 read from T0287.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LP 1kjlA 142 :AN T0287 152 :LKLFVM 1kjlA 145 :IALDFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14170 # 1vqoS.149.59 read from T0287.t2k.many.frag # found chain 1vqoS in template set Warning: unaligning (T0287)P150 (1vqoS)G60 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1vqoS)R67 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :L 1vqoS 59 :D T0287 151 :LLKLFV 1vqoS 61 :EKKAVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=14172 # 1nh1A.150.173 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 150 :PLLKLFVMT 1nh1A 174 :PLNTFRVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14173 # 1l9vA.150.184 read from T0287.t2k.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1l9vA 186 :EYKVTLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14174 # 2biqA.150.156 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 150 :PLLKLFVMT 2biqA 250 :PILTIITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14175 # 1uv4A.150.34 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1uv4A 35 :R T0287 152 :LKLFV 1uv4A 37 :LRVLK T0287 158 :T 1uv4A 43 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=14178 # 1vr8A.150.58 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)P150 (1vr8A)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1vr8A 72 :PVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14179 # 2b8mA.150.91 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 150 :PLLK 2b8mA 91 :DILE T0287 156 :VMT 2b8mA 97 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14181 # 1k3sA.150.77 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1k3sA 79 :LVALYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=14182 # 1ry9A.150.108 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1ry9A 98 :LQLRVVIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14183 # 2a8eA.150.167 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVMT 2a8eA 173 :IQLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=14185 # 1ow1A.150.152 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 150 :PLLKLFVMT 1ow1A 3622 :PAYVLQIFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14186 # 1fjgP.150.14 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)K153 (1fjgP)R18 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1fjgP 15 :PHY T0287 154 :LFVMT 1fjgP 19 :IVVTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14188 # 1gsa.150.219 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)K153 (1gsa)L223 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1gsa 220 :PYC T0287 154 :LFVMT 1gsa 224 :ARIPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14190 # 1no5A.150.44 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 T0287 150 :PLLKLFVM 1no5A 45 :SDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=14191 # 1p90A.150.27 read from T0287.t2k.many.frag # found chain 1p90A in training set T0287 150 :PLLKLFVMT 1p90A 126 :LRFLVYQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14192 # 1vl7A.150.76 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 150 :PLLKLFVMT 1vl7A 65 :PLVNVLFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14193 # 1g60A.150.115 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1g60A)Q116 T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14194 # 1v4pA.150.100 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14195 # 1jl0A.150.237 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 150 :PLLKLFVMT 1jl0A 238 :TYWTIAITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14196 # 1k8wA.150.302 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1k8wA)I297 because P (beta_P) conformation "forbidden" or filtered. T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LFV 1k8wA 294 :MGE T0287 158 :T 1k8wA 298 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=14199 # 1ftrA.150.70 read from T0287.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1ftrA 71 :P T0287 152 :LKLFVMT 1ftrA 73 :VTIMIGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=14201 # 1jiwI.150.22 read from T0287.t2k.many.frag # found chain 1jiwI in training set T0287 150 :PLLKLFVMT 1jiwI 23 :PAICHLELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14202 # 1t6aA.150.66 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1t6aA 66 :K T0287 152 :LKLFVMT 1t6aA 68 :MAISVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=14204 # 1vs0A.150.211 read from T0287.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1vs0A 663 :LLMGIPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=14205 # 2btiA.150.29 read from T0287.t2k.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2btiA 29 :QVRIGVNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14206 # 1k2xA.150.78 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMT 1k2xA 85 :CVMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=14208 # 1wvhA.150.107 read from T0287.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)P150 (1wvhA)N1712 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1wvhA 1713 :VCHLFAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14209 # 1w0pA.150.712 read from T0287.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)P150 (1w0pA)Q713 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1w0pA)N714 because L (left) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1w0pA 715 :LGLWFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14210 # 2jdxA.150.36 read from T0287.t2k.many.frag # found chain 2jdxA in template set T0287 150 :PLLKLFVMT 2jdxA 74 :PLEEVIVGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14211 # 1ysqA.150.144 read from T0287.t2k.many.frag # found chain 1ysqA in training set T0287 150 :PLLKLFVMT 1ysqA 143 :PYAVSISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14212 # 1i4wA.150.251 read from T0287.t2k.many.frag # found chain 1i4wA in template set T0287 150 :PLLKLFVMT 1i4wA 240 :KPIALVEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14213 # 1nh1A.151.174 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 151 :LLKLFVMTD 1nh1A 175 :LNTFRVATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14214 # 1l9vA.151.185 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 151 :LLKLFVMTD 1l9vA 186 :EYKVTLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=14215 # 2biqA.151.157 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 151 :LLKLFVMTD 2biqA 251 :ILTIITLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=14216 # 1ry9A.151.109 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ry9A 98 :LQLRVV T0287 158 :TD 1ry9A 105 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14218 # 1vr8A.151.59 read from T0287.t2k.many.frag # found chain 1vr8A in training set T0287 151 :LLKLFVMTD 1vr8A 72 :PVFLYVYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14219 # 1uv4A.151.35 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1uv4A 36 :GLRVLK T0287 158 :TD 1uv4A 43 :SD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14221 # 1vl7A.151.77 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 151 :LLKLFVMTD 1vl7A 66 :LVNVLFVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14222 # 1no5A.151.45 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 T0287 151 :LLKLFVM 1no5A 46 :DLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=14223 # 2a8eA.151.168 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVMTD 2a8eA 173 :IQLQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14225 # 1k3sA.151.78 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1k3sA 79 :LV T0287 154 :LFVMTD 1k3sA 82 :LYRLPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14227 # 1gsa.151.220 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 151 :LLKLFVMTD 1gsa 221 :YCLARIPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14228 # 2b8mA.151.92 read from T0287.t2k.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 151 :LLK 2b8mA 92 :ILE T0287 156 :VMTD 2b8mA 97 :VVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14230 # 1jl0A.151.238 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 151 :LLKLFVMTD 1jl0A 239 :YWTIAITPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14231 # 1fjgP.151.15 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1fjgP 16 :HYRIVV T0287 158 :TD 1fjgP 23 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14233 # 1k8wA.151.303 read from T0287.t2k.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LL 1k8wA 291 :FI T0287 154 :LFVMTD 1k8wA 294 :MGEIDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14235 # 1ow1A.151.153 read from T0287.t2k.many.frag # found chain 1ow1A in training set T0287 151 :LLKLFVMTD 1ow1A 3623 :AYVLQIFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14236 # 1wd6A.151.66 read from T0287.t2k.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L151 (1wd6A)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :L 1wd6A 51 :G T0287 154 :LFVMT 1wd6A 53 :IYLFT Number of specific fragments extracted= 2 number of extra gaps= 3 total=14238 # 1g60A.151.116 read from T0287.t2k.many.frag # found chain 1g60A in training set T0287 151 :LLKLFVMTD 1g60A 117 :ETILFFSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14239 # 1p90A.151.28 read from T0287.t2k.many.frag # found chain 1p90A in training set T0287 151 :LLKLFVMTD 1p90A 127 :RFLVYQVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14240 # 1wvhA.151.108 read from T0287.t2k.many.frag # found chain 1wvhA in template set T0287 151 :LLKLFVMTD 1wvhA 1713 :VCHLFAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14241 # 1ysqA.151.145 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :L 1ysqA 144 :Y T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TD 1ysqA 151 :ST Number of specific fragments extracted= 3 number of extra gaps= 2 total=14244 # 1k2xA.151.79 read from T0287.t2k.many.frag # found chain 1k2xA in training set T0287 151 :LLKLFVMTD 1k2xA 81 :ELDACVMDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14245 # 1ifrA.151.19 read from T0287.t2k.many.frag # found chain 1ifrA in training set T0287 151 :LLKLFVMTD 1ifrA 451 :FVRLRNKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14246 # 1ftrA.151.71 read from T0287.t2k.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ftrA 73 :VTIMIGHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=14247 # 1v4pA.151.101 read from T0287.t2k.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)D159 (1v4pA)D110 because L (left) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14248 # 2cxhA.151.98 read from T0287.t2k.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2cxhA 79 :IIRVYAVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14249 # 1vetA.151.87 read from T0287.t2k.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1vetA 88 :LVVSFI T0287 158 :TD 1vetA 95 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14251 # 1ikoP.151.48 read from T0287.t2k.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M157 (1ikoP)V84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ikoP 78 :YYKVYM T0287 158 :TD 1ikoP 85 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14253 # 2acaA.151.135 read from T0287.t2k.many.frag # found chain 2acaA in template set Warning: unaligning (T0287)F155 (2acaA)A140 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKL 2acaA 136 :FAEF T0287 156 :VMTD 2acaA 141 :IMTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14255 # 1yu0A.151.107 read from T0287.t2k.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 151 :LLKL 1yu0A 108 :DYAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14257 # 1l9vA.152.186 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 152 :LKLFVMTDE 1l9vA 187 :YKVTLNEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14258 # 1nh1A.152.175 read from T0287.t2k.many.frag # found chain 1nh1A in template set T0287 152 :LKLFVMTDE 1nh1A 176 :NTFRVATDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14259 # 1no5A.152.46 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)M157 (1no5A)I52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 T0287 152 :LKLFV 1no5A 47 :LDLAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14260 # 1vl7A.152.78 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 152 :LKLFVMTDE 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14261 # 1ry9A.152.110 read from T0287.t2k.many.frag # found chain 1ry9A in template set T0287 152 :LKLFVMTDE 1ry9A 99 :QLRVVIKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14262 # 1jl0A.152.239 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 152 :LKLFVMTDE 1jl0A 240 :WTIAITPEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14263 # 1vr8A.152.60 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1vr8A 73 :VFLYVYK T0287 160 :E 1vr8A 81 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=14265 # 1uv4A.152.36 read from T0287.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)E160 (1uv4A)A45 because L (left) conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1uv4A 37 :LRVLKSSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14266 # 1ifrA.152.20 read from T0287.t2k.many.frag # found chain 1ifrA in training set T0287 152 :LKLFVMTDE 1ifrA 452 :VRLRNKSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14267 # 1fjgP.152.16 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)K153 (1fjgP)R18 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 1fjgP 17 :Y T0287 154 :LFVMTDE 1fjgP 19 :IVVTDAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14269 # 2a8eA.152.169 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 152 :LKLFVMTDE 2a8eA 170 :LCGIQLQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14270 # 2biqA.152.158 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 152 :LKLFVMTDE 2biqA 252 :LTIITLEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14271 # 1wd6A.152.67 read from T0287.t2k.many.frag # found chain 1wd6A in template set T0287 152 :LKLFVMTDE 1wd6A 51 :GGIYLFTDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14272 # 1wvhA.152.109 read from T0287.t2k.many.frag # found chain 1wvhA in template set T0287 152 :LKLFVMTDE 1wvhA 1714 :CHLFAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14273 # 1gsa.152.221 read from T0287.t2k.many.frag # found chain 1gsa in template set T0287 152 :LKLFVMTDE 1gsa 222 :CLARIPQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14274 # 1k8wA.152.304 read from T0287.t2k.many.frag # found chain 1k8wA in template set T0287 152 :LKLFVMTDE 1k8wA 292 :IGMGEIDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14275 # 2c60A.152.67 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 T0287 152 :LKLFV 2c60A 81 :LDLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14277 # 1yu0A.152.108 read from T0287.t2k.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 152 :LKL 1yu0A 109 :YAI T0287 157 :MTDE 1yu0A 114 :CDDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=14279 # 2cy5A.152.94 read from T0287.t2k.many.frag # found chain 2cy5A in template set T0287 152 :LKLFVMTDE 2cy5A 120 :LLLVCQEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14280 # 1vetA.152.88 read from T0287.t2k.many.frag # found chain 1vetA in template set T0287 152 :LKLFVMTDE 1vetA 89 :VVSFIASSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14281 # 1g60A.152.117 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1g60A 118 :TILFFSK T0287 160 :E 1g60A 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=14283 # 1f8eA.152.109 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFV 1f8eA 190 :MSICI T0287 159 :DE 1f8eA 197 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14285 # 1k2xA.152.80 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 1k2xA 82 :LD T0287 155 :FVMTDE 1k2xA 85 :CVMDGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14287 # 1yb3A.152.83 read from T0287.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1yb3A)F77 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1yb3A)F77 T0287 154 :LFVMTDE 1yb3A 78 :VFAFPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14288 # 2cxhA.152.99 read from T0287.t2k.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 2cxhA 80 :IRVYAVE T0287 160 :E 2cxhA 88 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=14290 # 1k3sA.152.79 read from T0287.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :L 1k3sA 80 :V T0287 154 :LFVMTDE 1k3sA 82 :LYRLPQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=14292 # 1dp4A.152.375 read from T0287.t2k.many.frag # found chain 1dp4A in template set T0287 152 :LKLFVMTDE 1dp4A 376 :FSLWDMDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14293 # 1o4yA.152.118 read from T0287.t2k.many.frag # found chain 1o4yA in training set T0287 152 :LKLFVMTDE 1o4yA 135 :NAFWTLTDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14294 # 1ysqA.152.146 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1ysqA 145 :AVSIS T0287 158 :TDE 1ysqA 151 :STS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14296 # 1tvgA.152.81 read from T0287.t2k.many.frag # found chain 1tvgA in training set T0287 152 :LKLFVMTDE 1tvgA 72 :LKIEKSTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14297 # 1no5A.153.47 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)K153 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 1 number of extra gaps= 2 total=14298 # 1ry9A.153.111 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFV 1ry9A 100 :LRVV T0287 158 :TDEE 1ry9A 105 :KDDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14300 # 1jl0A.153.240 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 153 :KLFVMTDEE 1jl0A 241 :TIAITPEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14301 # 1l9vA.153.187 read from T0287.t2k.many.frag # found chain 1l9vA in template set T0287 153 :KLFVMTDEE 1l9vA 188 :KVTLNEDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14302 # 1vl7A.153.79 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 153 :KLFVMTDEE 1vl7A 68 :NVLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14303 # 2biqA.153.159 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 153 :KLFVMTDEE 2biqA 253 :TIITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14304 # 1wd6A.153.68 read from T0287.t2k.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1wd6A 53 :IYLFTDEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14305 # 1g60A.153.118 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1g60A 119 :ILFFSK T0287 160 :EE 1g60A 126 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14307 # 2c60A.153.68 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)K153 (2c60A)D82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 3 total=14309 # 2czrA.153.72 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 2czrA 65 :HIVAIPDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=14310 # 2a8eA.153.170 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :K 2a8eA 171 :C T0287 155 :FVMTDEE 2a8eA 173 :IQLQKEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14312 # 1dp4A.153.376 read from T0287.t2k.many.frag # found chain 1dp4A in template set T0287 153 :KLFVMTDEE 1dp4A 377 :SLWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=14313 # 1nh1A.153.176 read from T0287.t2k.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)T158 (1nh1A)T182 because G (3-10) conformation "forbidden" or filtered. T0287 153 :KLFVM 1nh1A 177 :TFRVA T0287 159 :DEE 1nh1A 183 :DTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14315 # 3sil.153.139 read from T0287.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0287)E160 (3sil)D150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (3sil)G151 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KLFVMTD 3sil 143 :VLYKSTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14316 # 1o4yA.153.119 read from T0287.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)K153 (1o4yA)A136 because E (beta_S) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1o4yA 137 :FWTLTDDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14317 # 1h5rA.153.174 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 153 :KLFVMTDEE 1h5rA 175 :GLYFYDNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14318 # 1wvhA.153.110 read from T0287.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)D159 (1wvhA)D1721 because E (beta_S) conformation "forbidden" or filtered. T0287 153 :KLFVMT 1wvhA 1715 :HLFAEL T0287 160 :EE 1wvhA 1722 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14320 # 1vr8A.153.61 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1vr8A 74 :FLYVYK T0287 160 :EE 1vr8A 81 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14322 # 1ysqA.153.147 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TDEE 1ysqA 151 :STSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14324 # 1k2xA.153.81 read from T0287.t2k.many.frag # found chain 1k2xA in training set T0287 153 :KLFVMTDEE 1k2xA 83 :DACVMDGNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14325 # 1ftrA.153.73 read from T0287.t2k.many.frag # found chain 1ftrA in training set T0287 153 :KLFVMTDEE 1ftrA 74 :TIMIGHNDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14326 # 1gsa.153.222 read from T0287.t2k.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)K153 (1gsa)L223 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1gsa)T232 T0287 154 :LFVMT 1gsa 224 :ARIPQ T0287 160 :E 1gsa 230 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=14328 # 1fjgP.153.17 read from T0287.t2k.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1fjgP 18 :RIVV T0287 158 :TDEE 1fjgP 23 :DARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14330 # 1gycA.153.121 read from T0287.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)K153 (1gycA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1gycA 123 :PFVVYDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14331 # 1f8eA.153.110 read from T0287.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1f8eA)P197 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFV 1f8eA 191 :SICI T0287 158 :T 1f8eA 196 :G T0287 160 :EE 1f8eA 198 :NN Number of specific fragments extracted= 3 number of extra gaps= 2 total=14334 # 1yu0A.153.109 read from T0287.t2k.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KL 1yu0A 110 :AI T0287 157 :MTD 1yu0A 114 :CDD T0287 161 :E 1yu0A 118 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=14337 # 2b4vA.153.79 read from T0287.t2k.many.frag # found chain 2b4vA in template set Warning: unaligning (T0287)E160 (2b4vA)D106 because N (gamma') conformation "forbidden" or filtered. T0287 153 :KLFVMTD 2b4vA 99 :DLACMFD T0287 161 :E 2b4vA 107 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=14339 # 1vetA.153.89 read from T0287.t2k.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1vetA 90 :VSFI T0287 158 :TDEE 1vetA 95 :SSSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14341 # 1k8wA.153.305 read from T0287.t2k.many.frag # found chain 1k8wA in template set T0287 153 :KLFVMTDEE 1k8wA 293 :GMGEIDDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14342 # 1yrkA.153.72 read from T0287.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1yrkA)A77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1yrkA)E78 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KLFVMT 1yrkA 70 :QIVLMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=14343 # 1no5A.154.48 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=14344 # 1zpvA.154.48 read from T0287.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 154 :LFVMTD 1zpvA 46 :AVVSSD T0287 161 :EV 1zpvA 53 :KQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14346 # 2a8eA.154.171 read from T0287.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 2a8eA 173 :IQLQKEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=14347 # 2biqA.154.160 read from T0287.t2k.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)V162 (2biqA)G262 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 2biqA 254 :IITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=14348 # 1ry9A.154.112 read from T0287.t2k.many.frag # found chain 1ry9A in template set T0287 154 :LFVMTDEEV 1ry9A 101 :RVVIKDDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14349 # 2c60A.154.69 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=14351 # 1g60A.154.119 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1g60A 120 :LFFSK T0287 160 :EEV 1g60A 126 :KNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=14353 # 1wd6A.154.69 read from T0287.t2k.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1wd6A 53 :IYLFT T0287 160 :EEV 1wd6A 59 :EKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14355 # 2czrA.154.73 read from T0287.t2k.many.frag # found chain 2czrA in template set T0287 154 :LFVMTDEEV 2czrA 66 :IVAIPDNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14356 # 1o4yA.154.120 read from T0287.t2k.many.frag # found chain 1o4yA in training set T0287 154 :LFVMTDEEV 1o4yA 137 :FWTLTDDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=14357 # 1yrkA.154.73 read from T0287.t2k.many.frag # found chain 1yrkA in template set T0287 154 :LFVMTDEEV 1yrkA 71 :IVLMRAAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14358 # 1ysqA.154.148 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1ysqA 147 :SIS T0287 158 :TDEEV 1ysqA 151 :STSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14360 # 1gycA.154.122 read from T0287.t2k.many.frag # found chain 1gycA in template set T0287 154 :LFVMTDEEV 1gycA 123 :PFVVYDPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14361 # 1f60B.154.58 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 154 :LFVMTDEEV 1f60B 1171 :NCVVEDDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14362 # 1h5rA.154.175 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 154 :LFVMTDEEV 1h5rA 176 :LYFYDNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14363 # 1vr8A.154.62 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1vr8A 75 :LYVYK T0287 160 :EEV 1vr8A 81 :EEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14365 # 12asA.154.119 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 154 :LFVMTD 12asA 120 :ERVMGD T0287 161 :EV 12asA 127 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=14367 # 1gw5S.154.66 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 154 :LFVMTDEEV 1gw5S 67 :FCICVDVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=14368 # 1dp4A.154.377 read from T0287.t2k.many.frag # found chain 1dp4A in template set T0287 154 :LFVMTDEEV 1dp4A 378 :LWDMDPETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14369 # 2ajfE.154.63 read from T0287.t2k.many.frag # found chain 2ajfE in template set T0287 154 :LFVMTDEEV 2ajfE 386 :SFVVKGDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14370 # 1k2xA.154.82 read from T0287.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1k2xA)L92 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 1 number of extra gaps= 2 total=14371 # 1cfzA.154.73 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 154 :LFVMTDE 1cfzA 74 :MMILRDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14372 # 1wnaA.154.90 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 154 :LFVMTDEEV 1wnaA 91 :EAVVSPGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14373 # 1vl7A.154.80 read from T0287.t2k.many.frag # found chain 1vl7A in training set T0287 154 :LFVMTDEEV 1vl7A 69 :VLFVDDEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14374 # 1t9fA.154.158 read from T0287.t2k.many.frag # found chain 1t9fA in template set T0287 154 :LFVMTDEEV 1t9fA 178 :EVVGTDSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14375 # 1ftrA.154.74 read from T0287.t2k.many.frag # found chain 1ftrA in training set T0287 154 :LFVMTDEEV 1ftrA 75 :IMIGHNDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=14376 # 1vr7A.154.90 read from T0287.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 154 :LFVMT 1vr7A 79 :DLFTC T0287 162 :V 1vr7A 87 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=14378 # 2a2cA.154.428 read from T0287.t2k.many.frag # found chain 2a2cA in template set T0287 154 :LFVMTDEEV 2a2cA 409 :VSMVPADKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14379 # 1yj7A.154.125 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 154 :LFVMTDEEV 1yj7A 145 :VLVISSPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14380 # 1jl0A.154.241 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 154 :LFVMTDEEV 1jl0A 242 :IAITPEPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14381 # 2a8eA.155.172 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 155 :FVMTDEEVN 2a8eA 173 :IQLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14382 # 1zpvA.155.49 read from T0287.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 155 :FVMTD 1zpvA 47 :VVSSD T0287 161 :EVN 1zpvA 53 :KQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14384 # 1no5A.155.49 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 T0287 155 :FVM 1no5A 50 :AII Number of specific fragments extracted= 1 number of extra gaps= 1 total=14385 # 1cfzA.155.74 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 155 :FVMTDE 1cfzA 75 :MILRDE T0287 163 :N 1cfzA 83 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=14387 # 2c60A.155.70 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 155 :FV 2c60A 84 :HY T0287 159 :DE 2c60A 88 :NE T0287 163 :N 2c60A 92 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=14390 # 1xkpC.155.94 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 155 :FVMTDEEVN 1xkpC 95 :ARLRLQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14391 # 1wnaA.155.91 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 155 :FVMTDEEVN 1wnaA 92 :AVVSPGEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14392 # 2biqA.155.161 read from T0287.t2k.many.frag # found chain 2biqA in template set T0287 155 :FVMTDEEVN 2biqA 255 :ITLEDSSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14393 # 1yb3A.155.86 read from T0287.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1yb3A 79 :FAFPKEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14394 # 1gw5S.155.67 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 155 :FVMTDEEVN 1gw5S 68 :CICVDVNDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14395 # 1h5rA.155.176 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 155 :FVMTDEEVN 1h5rA 177 :YFYDNDVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14396 # 1ysqA.155.149 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FV 1ysqA 148 :IS T0287 158 :TDEEVN 1ysqA 151 :STSRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14398 # 2b5iC.155.59 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 155 :FVMTDEEVN 2b5iC 93 :CQLQKKEIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14399 # 1ry9A.155.113 read from T0287.t2k.many.frag # found chain 1ry9A in template set T0287 155 :FVMTDEEVN 1ry9A 102 :VVIKDDYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14400 # 1f60B.155.59 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 155 :FVMTDEEVN 1f60B 1172 :CVVEDDKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14401 # 1g60A.155.120 read from T0287.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1g60A 121 :FFSK T0287 160 :EEVN 1g60A 126 :KNHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=14403 # 1vr8A.155.63 read from T0287.t2k.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1vr8A 76 :YVYK T0287 160 :EEVN 1vr8A 81 :EEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14405 # 12asA.155.120 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTD 12asA 121 :RVMGD T0287 161 :EV 12asA 127 :ER Number of specific fragments extracted= 2 number of extra gaps= 2 total=14407 # 1t6aA.155.71 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)D159 (1t6aA)A75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. T0287 155 :FVMT 1t6aA 71 :SVRT T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 1 total=14409 # 1yj7A.155.126 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 155 :FVMTDEEVN 1yj7A 146 :LVISSPEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14410 # 1wd6A.155.70 read from T0287.t2k.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1wd6A 54 :YLFT T0287 160 :EEVN 1wd6A 59 :EKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14412 # 1gycA.155.123 read from T0287.t2k.many.frag # found chain 1gycA in template set T0287 155 :FVMTDEEVN 1gycA 124 :FVVYDPKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14413 # 2a90A.155.27 read from T0287.t2k.many.frag # found chain 2a90A in template set T0287 155 :FVMTDEEVN 2a90A 49 :WEFESRGKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=14414 # 1uylA.155.186 read from T0287.t2k.many.frag # found chain 1uylA in training set T0287 155 :FVMTDEEVN 1uylA 187 :ILHLKEDQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14415 # 2czrA.155.74 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDE 2czrA 67 :VAIPDN T0287 162 :VN 2czrA 74 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14417 # 1pv5A.155.222 read from T0287.t2k.many.frag # found chain 1pv5A in training set T0287 155 :FVMTDEEVN 1pv5A 220 :QIDSDDDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=14418 # 1ln1A.155.41 read from T0287.t2k.many.frag # found chain 1ln1A in template set T0287 155 :FVMTDEEVN 1ln1A 42 :YRLLDKKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14419 # 1yrkA.155.74 read from T0287.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1yrkA 72 :VLMR T0287 160 :EEVN 1yrkA 77 :AEEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14421 # 2ajfE.155.64 read from T0287.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0287)F155 (2ajfE)F387 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEVN 2ajfE 388 :VVKGDDVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=14422 # 1t9fA.155.159 read from T0287.t2k.many.frag # found chain 1t9fA in template set T0287 155 :FVMTDEEVN 1t9fA 179 :VVGTDSITG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14423 # 1cfzA.156.75 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 156 :VMTDE 1cfzA 76 :ILRDE T0287 163 :NF 1cfzA 83 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14425 # 1zpvA.156.50 read from T0287.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1zpvA 48 :V T0287 158 :TDEEVNF 1zpvA 50 :SDEKQDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14427 # 1no5A.156.50 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 156 :VM 1no5A 51 :II Number of specific fragments extracted= 1 number of extra gaps= 1 total=14428 # 2a8eA.156.173 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 156 :VMTDEEVNF 2a8eA 174 :QLQKEEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14429 # 2c60A.156.71 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 156 :V 2c60A 85 :Y T0287 159 :DE 2c60A 88 :NE T0287 163 :NF 2c60A 92 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=14432 # 1wnaA.156.92 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 156 :VMTDEEVNF 1wnaA 93 :VVSPGEMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14433 # 1h5rA.156.177 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 156 :VMTDEEVNF 1h5rA 178 :FYDNDVVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14434 # 12asA.156.121 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTD 12asA 122 :VMGD T0287 161 :EV 12asA 127 :ER T0287 164 :F 12asA 130 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=14437 # 1xkpC.156.95 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 156 :VMTDEEVNF 1xkpC 96 :RLRLQELDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14438 # 2b5iC.156.60 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 156 :VMTDEEVNF 2b5iC 94 :QLQKKEIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14439 # 1yb3A.156.87 read from T0287.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1yb3A 80 :AFPKEEL T0287 164 :F 1yb3A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=14441 # 1t6aA.156.72 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 T0287 156 :VMTDEEVN 1t6aA 72 :VRTAGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=14442 # 1f60B.156.60 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 156 :VMTDEEVNF 1f60B 1173 :VVEDDKVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14443 # 1gw5S.156.68 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 156 :VMTDEEVNF 1gw5S 69 :ICVDVNDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14444 # 1vr8A.156.64 read from T0287.t2k.many.frag # found chain 1vr8A in training set T0287 156 :VMTDEEVNF 1vr8A 77 :VYKGEEAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14445 # 1zn6A.156.183 read from T0287.t2k.many.frag # found chain 1zn6A in template set T0287 156 :VMTDEEVNF 1zn6A 184 :ILPDGAYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14446 # 1yj7A.156.127 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 156 :VMTDEEVNF 1yj7A 147 :VISSPEVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14447 # 2a90A.156.28 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMTD 2a90A 50 :EFES T0287 162 :VNF 2a90A 56 :KWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14449 # 1ysqA.156.150 read from T0287.t2k.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1ysqA 149 :S T0287 158 :TDEEVNF 1ysqA 151 :STSRLKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14451 # 1zh1A.156.96 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMTDE 1zh1A 132 :GMTTD T0287 162 :VNF 1zh1A 138 :VKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=14453 # 1uwcA.156.225 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMT 1uwcA 226 :VCT T0287 160 :EEV 1uwcA 230 :DEV T0287 164 :F 1uwcA 234 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=14456 # 2czrA.156.75 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)F164 (2czrA)Y76 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEVN 2czrA 68 :AIPDNGVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14457 # 1ry9A.156.114 read from T0287.t2k.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)V162 (1ry9A)V109 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEE 1ry9A 103 :VIKDDY T0287 163 :NF 1ry9A 110 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14459 # 1yymG.156.84 read from T0287.t2k.many.frag # found chain 1yymG in template set Warning: unaligning (T0287)E160 (1yymG)K231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1yymG)K232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1yymG)G235 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMTD 1yymG 227 :KCND T0287 162 :VN 1yymG 233 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=14461 # 1pv5A.156.223 read from T0287.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0287)V162 (1pv5A)I227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1pv5A)D228 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTDEE 1pv5A 221 :IDSDDD T0287 164 :F 1pv5A 229 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=14463 # 1dmgA.156.16 read from T0287.t2k.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)V162 (1dmgA)F24 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEE 1dmgA 18 :EISDFV T0287 163 :NF 1dmgA 25 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14465 # 1xg8A.156.12 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E160 (1xg8A)V8 because E (beta_S) conformation "forbidden" or filtered. T0287 156 :VMTD 1xg8A 4 :YGAD T0287 161 :EVNF 1xg8A 9 :ICAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14467 # 1uylA.156.187 read from T0287.t2k.many.frag # found chain 1uylA in training set T0287 156 :VMTDEEVNF 1uylA 188 :LHLKEDQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14468 # 1yreA.156.177 read from T0287.t2k.many.frag # found chain 1yreA in template set T0287 156 :VMTDEEVNF 1yreA 176 :SITDHEWPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14469 # 1jiwI.156.28 read from T0287.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E160 (1jiwI)S33 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :VMTD 1jiwI 29 :ELRD T0287 161 :EVNF 1jiwI 34 :EVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14471 # 1cfzA.157.76 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 157 :MTDE 1cfzA 77 :LRDE T0287 163 :NFY 1cfzA 83 :PAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14473 # 1zpvA.157.51 read from T0287.t2k.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1zpvA 50 :SDEKQDFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=14474 # 2c60A.157.72 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFY 2c60A 92 :ILL Number of specific fragments extracted= 2 number of extra gaps= 2 total=14476 # 1no5A.157.51 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 157 :M 1no5A 52 :I T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=14478 # 1wnaA.157.93 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 157 :MTDEEVNFY 1wnaA 94 :VSPGEMTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14479 # 1h5rA.157.178 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 157 :MTDEEVNFY 1h5rA 179 :YDNDVVQMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14480 # 12asA.157.122 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEV 12asA 123 :MGDGER T0287 164 :FY 12asA 130 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14482 # 2b5iC.157.61 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 157 :MTDEEVNFY 2b5iC 95 :LQKKEIHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14483 # 1xkpC.157.96 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 157 :MTDEEVNFY 1xkpC 97 :LRLQELDTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14484 # 1f60B.157.61 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 157 :MTDEEVNFY 1f60B 1174 :VEDDKVSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14485 # 2a8eA.157.174 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 157 :MTDEEVNFY 2a8eA 175 :LQKEEVLNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14486 # 1t6aA.157.73 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 157 :MTDEEVN 1t6aA 73 :RTAGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=14487 # 1gw5S.157.69 read from T0287.t2k.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)T158 (1gw5S)V71 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :M 1gw5S 70 :C T0287 159 :DEEVNFY 1gw5S 72 :DVNDNNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14489 # 1yj7A.157.128 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 157 :MTDEEVNFY 1yj7A 148 :ISSPEVNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14490 # 1yb3A.157.88 read from T0287.t2k.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEV 1yb3A 81 :FPKEEL T0287 164 :FY 1yb3A 88 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14492 # 1zh1A.157.97 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)N163 (1zh1A)K139 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MTDEEV 1zh1A 133 :MTTDNV T0287 164 :FY 1zh1A 140 :CP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14494 # 2a90A.157.29 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)D159 (2a90A)S53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MT 2a90A 51 :FE T0287 160 :E 2a90A 54 :R T0287 162 :VNFY 2a90A 56 :KWLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=14497 # 1uwcA.157.226 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 157 :MT 1uwcA 227 :CT T0287 160 :EEVN 1uwcA 230 :DEVQ T0287 165 :Y 1uwcA 235 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=14500 # 1h70A.157.194 read from T0287.t2k.many.frag # found chain 1h70A in training set T0287 157 :MTDEEVNFY 1h70A 194 :EIPEEESYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14501 # 1xg8A.157.13 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1xg8A 6 :ADVICASC Number of specific fragments extracted= 1 number of extra gaps= 1 total=14502 # 1zn6A.157.184 read from T0287.t2k.many.frag # found chain 1zn6A in template set T0287 157 :MTDEEVNFY 1zn6A 185 :LPDGAYGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=14503 # 1pbjA.157.101 read from T0287.t2k.many.frag # found chain 1pbjA in training set Warning: unaligning (T0287)D159 (1pbjA)D104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1pbjA)D105 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MT 1pbjA 102 :EE T0287 161 :EVNFY 1pbjA 106 :EIIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14505 # 2czrA.157.76 read from T0287.t2k.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 157 :MTDE 2czrA 69 :IPDN T0287 162 :VNFY 2czrA 74 :VFYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14507 # 1vr8A.157.65 read from T0287.t2k.many.frag # found chain 1vr8A in training set T0287 157 :MTDEEVNFY 1vr8A 78 :YKGEEAKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14508 # 1n9pA.157.151 read from T0287.t2k.many.frag # found chain 1n9pA in training set Warning: unaligning (T0287)Y165 (1n9pA)G324 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTDEEVNF 1n9pA 316 :YTEDEVLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=14509 # 1o97D.157.287 read from T0287.t2k.many.frag # found chain 1o97D in training set T0287 157 :MTDEEVNFY 1o97D 288 :NTDPGASIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14510 # 1t3gA.157.19 read from T0287.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFY 1t3gA 424 :GEEERFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14511 # 1m9zA.157.41 read from T0287.t2k.many.frag # found chain 1m9zA in training set T0287 157 :MTDEEVNFY 1m9zA 67 :KNDENITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14512 # 1vr7A.157.93 read from T0287.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 157 :MT 1vr7A 82 :TC T0287 162 :VNFY 1vr7A 87 :VDPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=14514 # 1kzfA.157.184 read from T0287.t2k.many.frag # found chain 1kzfA in training set T0287 157 :MTDEEVNFY 1kzfA 165 :LTEKERIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14515 # 1cfzA.158.77 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 158 :TDE 1cfzA 78 :RDE T0287 163 :NFYA 1cfzA 83 :PALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=14517 # 2c60A.158.73 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)A166 (2c60A)K95 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DE 2c60A 88 :NE T0287 163 :NFY 2c60A 92 :ILL Number of specific fragments extracted= 2 number of extra gaps= 3 total=14519 # 1zpvA.158.52 read from T0287.t2k.many.frag # found chain 1zpvA in template set T0287 158 :TDEEVNFYA 1zpvA 50 :SDEKQDFTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14520 # 1wnaA.158.94 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 158 :TDEEVNFYA 1wnaA 95 :SPGEMTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14521 # 1h5rA.158.179 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 158 :TDEEVNFYA 1h5rA 180 :DNDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14522 # 1gw5S.158.70 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 158 :TDEEVNFYA 1gw5S 71 :VDVNDNNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14523 # 12asA.158.123 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TD 12asA 124 :GD T0287 161 :EV 12asA 127 :ER T0287 164 :FYA 12asA 130 :FST Number of specific fragments extracted= 3 number of extra gaps= 2 total=14526 # 1no5A.158.52 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=14527 # 1uwcA.158.227 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :T 1uwcA 228 :T T0287 160 :EEV 1uwcA 230 :DEV T0287 165 :YA 1uwcA 235 :CE Number of specific fragments extracted= 3 number of extra gaps= 2 total=14530 # 1t6aA.158.74 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 Warning: unaligning (T0287)A166 (1t6aA)D82 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TDEEVN 1t6aA 74 :TAGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=14531 # 1h70A.158.195 read from T0287.t2k.many.frag # found chain 1h70A in training set T0287 158 :TDEEVNFYA 1h70A 195 :IPEEESYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14532 # 2a90A.158.30 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDE 2a90A 52 :ESR T0287 162 :VNFYA 2a90A 56 :KWLPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14534 # 1xkpC.158.97 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 158 :TDEEVNFYA 1xkpC 98 :RLQELDTHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14535 # 1yj7A.158.129 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 158 :TDEEVNFYA 1yj7A 149 :SSPEVNLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14536 # 1f60B.158.62 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 158 :TDEEVNFYA 1f60B 1175 :EDDKVSLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14537 # 2b5iC.158.62 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 158 :TDEEVNFYA 2b5iC 96 :QKKEIHLYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14538 # 1zh1A.158.98 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDE 1zh1A 134 :TTD T0287 162 :VNFYA 1zh1A 138 :VKCPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=14540 # 1xg8A.158.14 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 158 :TDEEVNFYA 1xg8A 6 :ADVICASCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14541 # 1pbjA.158.102 read from T0287.t2k.many.frag # found chain 1pbjA in training set T0287 158 :TDEEVNFYA 1pbjA 103 :EDDEIIGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14542 # 2btiA.158.37 read from T0287.t2k.many.frag # found chain 2btiA in template set T0287 158 :TDEEVNFYA 2btiA 36 :APKEVSVHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14543 # 1t3gA.158.20 read from T0287.t2k.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFYA 1t3gA 424 :GEEERFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14544 # 1l3lA.158.138 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 158 :TDEEVNFYA 1l3lA 139 :LDREIDAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14545 # 1zn6A.158.185 read from T0287.t2k.many.frag # found chain 1zn6A in template set T0287 158 :TDEEVNFYA 1zn6A 186 :PDGAYGDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14546 # 1o97D.158.288 read from T0287.t2k.many.frag # found chain 1o97D in training set T0287 158 :TDEEVNFYA 1o97D 289 :TDPGASIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14547 # 1uylA.158.189 read from T0287.t2k.many.frag # found chain 1uylA in training set T0287 158 :TDEEVNFYA 1uylA 190 :LKEDQTEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14548 # 1mkaA.158.59 read from T0287.t2k.many.frag # found chain 1mkaA in template set T0287 158 :TDEEVNFYA 1mkaA 60 :INPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14549 # 2a8eA.158.175 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 158 :TDEEVNFYA 2a8eA 176 :QKEEVLNMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14550 # 1ngmB.158.31 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 158 :TD 1ngmB 466 :DD T0287 161 :EVNFY 1ngmB 469 :ELNAH Number of specific fragments extracted= 2 number of extra gaps= 2 total=14552 # 1lbu.158.162 read from T0287.t2k.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :TDEEV 1lbu 163 :GAGSQ T0287 164 :FYA 1lbu 169 :FCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14554 # 1yzxA.158.189 read from T0287.t2k.many.frag # found chain 1yzxA in template set T0287 158 :TDEEVNFYA 1yzxA 190 :VDGQTHMLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14555 # 1gw5S.159.71 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 159 :DEEVNFYAN 1gw5S 72 :DVNDNNLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14556 # 1cfzA.159.78 read from T0287.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 159 :DE 1cfzA 79 :DE T0287 163 :NFYAN 1cfzA 83 :PALFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=14558 # 1wnaA.159.95 read from T0287.t2k.many.frag # found chain 1wnaA in training set T0287 159 :DEEVNFYAN 1wnaA 96 :PGEMTALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14559 # 1l3lA.159.139 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 159 :DEEVNFYAN 1l3lA 140 :DREIDAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14560 # 1h5rA.159.180 read from T0287.t2k.many.frag # found chain 1h5rA in template set T0287 159 :DEEVNFYAN 1h5rA 181 :NDVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14561 # 2c60A.159.74 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYAN 2c60A 92 :ILLKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14563 # 1xkpC.159.98 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 159 :DEEVNFYAN 1xkpC 99 :LQELDTHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14564 # 1xg8A.159.15 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E161 (1xg8A)I9 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DE 1xg8A 7 :DV T0287 162 :VNFYAN 1xg8A 10 :CASCVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14566 # 12asA.159.124 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :D 12asA 125 :D T0287 161 :EV 12asA 127 :ER T0287 164 :FYAN 12asA 130 :FSTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=14569 # 1h70A.159.196 read from T0287.t2k.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)V162 (1h70A)E199 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1h70A)A202 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEE 1h70A 196 :PEE T0287 163 :NF 1h70A 200 :SY T0287 166 :AN 1h70A 203 :AN Number of specific fragments extracted= 3 number of extra gaps= 2 total=14572 # 1zh1A.159.99 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E160 (1zh1A)D136 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :D 1zh1A 135 :T T0287 161 :EVNFYAN 1zh1A 137 :NVKCPCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14574 # 1xdnA.159.68 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1xdnA)D116 Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 167 :N 1xdnA 124 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=14576 # 1zpvA.159.53 read from T0287.t2k.many.frag # found chain 1zpvA in template set T0287 159 :DEEVNFYAN 1zpvA 51 :DEKQDFTYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14577 # 1f60B.159.63 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 159 :DEEVNFYAN 1f60B 1176 :DDKVSLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14578 # 2a90A.159.31 read from T0287.t2k.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2a90A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :D 2a90A 53 :S T0287 161 :EVNFYA 2a90A 55 :GKWLPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=14580 # 1yj7A.159.130 read from T0287.t2k.many.frag # found chain 1yj7A in template set T0287 159 :DEEVNFYAN 1yj7A 150 :SPEVNLAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14581 # 1mkaA.159.60 read from T0287.t2k.many.frag # found chain 1mkaA in template set T0287 159 :DEEVNFYAN 1mkaA 61 :NPDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=14582 # 1ngmB.159.32 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 159 :DEEVNFY 1ngmB 467 :DEELNAH T0287 167 :N 1ngmB 475 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=14584 # 1lbu.159.163 read from T0287.t2k.many.frag # found chain 1lbu in training set T0287 159 :DEEVNFYAN 1lbu 164 :AGSQGFCAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14585 # 1t0tV.159.150 read from T0287.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)E160 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :D 1t0tV 151 :Q T0287 161 :EVNFYAN 1t0tV 153 :NDNWYML Number of specific fragments extracted= 2 number of extra gaps= 1 total=14587 # 1uylA.159.190 read from T0287.t2k.many.frag # found chain 1uylA in training set T0287 159 :DEEVNFYAN 1uylA 191 :KEDQTEYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14588 # 1uwcA.159.228 read from T0287.t2k.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEV 1uwcA 229 :GDEV T0287 164 :FYAN 1uwcA 234 :CCEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14590 # 1o97D.159.289 read from T0287.t2k.many.frag # found chain 1o97D in training set T0287 159 :DEEVNFYAN 1o97D 290 :DPGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14591 # 2b5iC.159.63 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 159 :DEEVNFYAN 2b5iC 97 :KKEIHLYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14592 # 1qo7A.159.366 read from T0287.t2k.many.frag # found chain 1qo7A in training set Warning: unaligning (T0287)N163 (1qo7A)G373 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :DEEV 1qo7A 369 :HAEG T0287 164 :FYAN 1qo7A 374 :HFAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14594 # 1t6aA.159.75 read from T0287.t2k.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 159 :DEEVN 1t6aA 75 :AGEET T0287 166 :AN 1t6aA 82 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14596 # 1rcwA.159.102 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 159 :DEEVNFYAN 1rcwA 103 :PEELEAHEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14597 # 1no5A.159.53 read from T0287.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=14598 # 2a8eA.159.176 read from T0287.t2k.many.frag # found chain 2a8eA in template set T0287 159 :DEEVNFYAN 2a8eA 177 :KEEVLNMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14599 # 1i60A.159.248 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 159 :DEEVNFYAN 1i60A 249 :RPEYYKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14600 # 1gw5S.160.72 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 160 :EEVNFYANL 1gw5S 73 :VNDNNLAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14601 # 1h5rA.160.181 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 T0287 160 :EEVNFYAN 1h5rA 182 :DVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=14602 # 1xg8A.160.16 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E160 (1xg8A)V8 because E (beta_S) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1xg8A 9 :ICASCVNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14603 # 1l3lA.160.140 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)E161 (1l3lA)E142 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :E 1l3lA 141 :R T0287 162 :VNFYANL 1l3lA 143 :IDAVAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14605 # 2c60A.160.75 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 160 :E 2c60A 89 :E T0287 163 :NFYANL 2c60A 92 :ILLKNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14607 # 1xkpC.160.99 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 160 :EEVNFYANL 1xkpC 100 :QELDTHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14608 # 1xdnA.160.69 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 167 :NL 1xdnA 124 :YH Number of specific fragments extracted= 2 number of extra gaps= 1 total=14610 # 1t0tV.160.151 read from T0287.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)E160 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1t0tV 153 :NDNWYMLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=14611 # 1zh1A.160.100 read from T0287.t2k.many.frag # found chain 1zh1A in template set T0287 160 :EEVNFYANL 1zh1A 136 :DNVKCPCQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14612 # 1f60B.160.64 read from T0287.t2k.many.frag # found chain 1f60B in training set T0287 160 :EEVNFYANL 1f60B 1177 :DKVSLDDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14613 # 1lbu.160.164 read from T0287.t2k.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYANL 1lbu 169 :FCALA Number of specific fragments extracted= 2 number of extra gaps= 2 total=14615 # 1rcwA.160.103 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 160 :EEVNFYANL 1rcwA 104 :EELEAHEPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14616 # 1mkaA.160.61 read from T0287.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)N167 (1mkaA)C69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 T0287 160 :EEVNFYA 1mkaA 62 :PDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=14617 # 1qnrA.160.129 read from T0287.t2k.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)E160 (1qnrA)N130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1qnrA)T136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1qnrA)N137 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFY 1qnrA 131 :ATTWY T0287 168 :L 1qnrA 138 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=14619 # 12asA.160.125 read from T0287.t2k.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EV 12asA 127 :ER T0287 164 :FYANL 12asA 130 :FSTLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=14621 # 1h70A.160.197 read from T0287.t2k.many.frag # found chain 1h70A in training set T0287 160 :EEVNFYANL 1h70A 197 :EEESYAANC Number of specific fragments extracted= 1 number of extra gaps= 0 total=14622 # 1ngmB.160.33 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1ngmB)N471 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 161 :EV 1ngmB 469 :EL T0287 164 :FY 1ngmB 472 :AH T0287 167 :NL 1ngmB 475 :LN Number of specific fragments extracted= 3 number of extra gaps= 3 total=14625 # 1zgkA.160.240 read from T0287.t2k.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 Warning: unaligning (T0287)A166 (1zgkA)A548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1zgkA)P549 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :E 1zgkA 542 :E T0287 163 :NFY 1zgkA 545 :TFV T0287 168 :L 1zgkA 550 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=14628 # 1yj7A.160.131 read from T0287.t2k.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)F164 (1yj7A)L155 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVN 1yj7A 151 :PEVN T0287 165 :YANL 1yj7A 156 :APSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14630 # 2ex0A.160.376 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 160 :EEVNFYANL 2ex0A 401 :SQVIFWDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14631 # 1fo8A.160.72 read from T0287.t2k.many.frag # found chain 1fo8A in training set T0287 160 :EEVNFYANL 1fo8A 177 :DHRKFQGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14632 # 2b5iC.160.64 read from T0287.t2k.many.frag # found chain 2b5iC in template set T0287 160 :EEVNFYANL 2b5iC 98 :KEIHLYQTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14633 # 1wnaA.160.96 read from T0287.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)N167 (1wnaA)D104 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1wnaA 97 :GEMTALL T0287 168 :L 1wnaA 105 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=14635 # 1o97D.160.290 read from T0287.t2k.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1o97D)K300 T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14636 # 1dmgA.160.20 read from T0287.t2k.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEV 1dmgA 22 :FVF T0287 164 :FYANL 1dmgA 26 :IDPNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14638 # 1zavA.160.126 read from T0287.t2k.many.frag # found chain 1zavA in template set T0287 160 :EEVNFYANL 1zavA 126 :EEVENIAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14639 # 1i60A.160.249 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 160 :EEVNFYANL 1i60A 250 :PEYYKLTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14640 # 1dqzA.160.42 read from T0287.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1dqzA 45 :DYNGWDIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=14641 # 1vk4A.160.186 read from T0287.t2k.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1vk4A 175 :REAETLT T0287 168 :L 1vk4A 183 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=14643 # 1h8eG.160.187 read from T0287.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h8eG)D197 T0287 160 :EEVNFYAN 1h8eG 188 :ESMSIYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14644 # 1gw5S.161.73 read from T0287.t2k.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EV 1gw5S 74 :ND T0287 164 :FYANLK 1gw5S 77 :NLAYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14646 # 1xg8A.161.17 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1xg8A 9 :ICASCVNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14647 # 1h5rA.161.182 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 161 :EVNFYAN 1h5rA 183 :VVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=14648 # 2c60A.161.76 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 163 :NFYANLK 2c60A 92 :ILLKNQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14649 # 1l3lA.161.141 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 161 :EVNFYANLK 1l3lA 142 :EIDAVAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14650 # 1t0tV.161.152 read from T0287.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)A166 (1t0tV)M158 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EVNFY 1t0tV 153 :NDNWY T0287 167 :NLK 1t0tV 159 :LSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=14652 # 1qnrA.161.130 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 161 :EVNFYANLK 1qnrA 131 :ATTWYTNTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14653 # 1xdnA.161.70 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EVNF 1xdnA 118 :NENF T0287 167 :NLK 1xdnA 124 :YHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14655 # 1dmgA.161.21 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 161 :EVNFYANLK 1dmgA 23 :VFNIDPNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14656 # 1rcwA.161.104 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 161 :EVNFYANLK 1rcwA 105 :ELEAHEPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14657 # 2ex0A.161.377 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 161 :EVNFYANLK 2ex0A 402 :QVIFWDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14658 # 1fo8A.161.73 read from T0287.t2k.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)N163 (1fo8A)K180 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EV 1fo8A 178 :HR T0287 164 :FYANLK 1fo8A 181 :FQGYYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14660 # 1lbu.161.165 read from T0287.t2k.many.frag # found chain 1lbu in training set T0287 161 :EVNFYANLK 1lbu 166 :SQGFCALAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14661 # 1josA.161.60 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 161 :EVNFYANLK 1josA 61 :EMAIEQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14662 # 1ngmB.161.34 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)Y165 (1ngmB)H473 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EVNF 1ngmB 469 :ELNA T0287 166 :ANLK 1ngmB 474 :LLNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14664 # 1mkaA.161.62 read from T0287.t2k.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1mkaA)F71 T0287 161 :EVNFYAN 1mkaA 63 :DLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=14665 # 1vk4A.161.187 read from T0287.t2k.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1vk4A 176 :EAETLT T0287 168 :LK 1vk4A 183 :TN Number of specific fragments extracted= 2 number of extra gaps= 1 total=14667 # 1hp1A.161.297 read from T0287.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1hp1A)R332 T0287 162 :VNFYANLK 1hp1A 333 :VLYTPEIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=14668 # 1xkpC.161.100 read from T0287.t2k.many.frag # found chain 1xkpC in training set T0287 161 :EVNFYANLK 1xkpC 101 :ELDTHGLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14669 # 1e0tA.161.314 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LK 1e0tA 322 :LE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14670 # 1dqzA.161.43 read from T0287.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)E161 (1dqzA)Y46 because E (beta_S) conformation "forbidden" or filtered. T0287 162 :VNFYANLK 1dqzA 47 :NGWDINTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=14671 # 1rz2A.161.143 read from T0287.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)V162 (1rz2A)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1rz2A)S146 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :E 1rz2A 144 :D T0287 164 :FYANLK 1rz2A 147 :MFGSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14673 # 1zdyA.161.127 read from T0287.t2k.many.frag # found chain 1zdyA in template set T0287 161 :EVNFYANLK 1zdyA 128 :NMPGVAELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14674 # 1t0hB.161.87 read from T0287.t2k.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)N163 (1t0hB)N291 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1t0hB)S295 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EV 1t0hB 289 :RS T0287 164 :FYA 1t0hB 292 :TRS T0287 168 :LK 1t0hB 296 :LA Number of specific fragments extracted= 3 number of extra gaps= 2 total=14677 # 1thtA.161.239 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)E161 (1thtA)S240 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1thtA)L243 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VN 1thtA 241 :HD T0287 165 :YANLK 1thtA 244 :GENLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=14679 # 1zh1A.161.101 read from T0287.t2k.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VNFYANLK 1zh1A 138 :VKCPCQVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=14680 # 1i60A.161.250 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 161 :EVNFYANLK 1i60A 251 :EYYKLTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14681 # 1zgkA.161.241 read from T0287.t2k.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 Warning: unaligning (T0287)N167 (1zgkA)P549 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFYA 1zgkA 545 :TFVA T0287 168 :LK 1zgkA 550 :MK Number of specific fragments extracted= 2 number of extra gaps= 2 total=14683 # 1zavA.161.127 read from T0287.t2k.many.frag # found chain 1zavA in template set Warning: unaligning (T0287)N167 (1zavA)K133 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1zavA 127 :EVENIA T0287 168 :LK 1zavA 134 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14685 # 12asA.161.126 read from T0287.t2k.many.frag # found chain 12asA in template set T0287 161 :EVNFYANLK 12asA 127 :ERQFSTLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14686 # 1xg8A.162.18 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 1xg8A 10 :CASCVNA T0287 170 :T 1xg8A 18 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=14688 # 1gw5S.162.74 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 162 :VNFYANLKT 1gw5S 75 :DNNLAYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14689 # 2c60A.162.77 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :LKT 2c60A 97 :QDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=14691 # 1h5rA.162.183 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 162 :VNFYAN 1h5rA 184 :VQMAKN T0287 170 :T 1h5rA 192 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=14693 # 2bgcA.162.205 read from T0287.t2k.many.frag # found chain 2bgcA in template set T0287 162 :VNFYANLKT 2bgcA 205 :CFYVQNLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14694 # 1dmgA.162.22 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 162 :VNFYANLKT 1dmgA 24 :FNIDPNYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14695 # 1e0tA.162.315 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKT 1e0tA 322 :LEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14696 # 1josA.162.61 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 162 :VNFYANLKT 1josA 62 :MAIEQGMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14697 # 1l3lA.162.142 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 162 :VNFYANLKT 1l3lA 143 :IDAVAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14698 # 1vk4A.162.188 read from T0287.t2k.many.frag # found chain 1vk4A in template set T0287 162 :VNFYANLKT 1vk4A 177 :AETLTGTND Number of specific fragments extracted= 1 number of extra gaps= 0 total=14699 # 1qnrA.162.131 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 162 :VNFYANLKT 1qnrA 132 :TTWYTNTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14700 # 1rcwA.162.105 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYA 1rcwA 106 :LEAHE T0287 168 :LKT 1rcwA 112 :SEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14702 # 1thtA.162.240 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)Y165 (1thtA)G244 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VNF 1thtA 241 :HDL T0287 166 :ANLKT 1thtA 245 :ENLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14704 # 2ex0A.162.378 read from T0287.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)K169 (2ex0A)K410 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 2ex0A 403 :VIFWDSL T0287 170 :T 2ex0A 411 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=14706 # 1t0tV.162.153 read from T0287.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)N163 (1t0tV)N155 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1t0tV)M158 because G (3-10) conformation "forbidden" or filtered. T0287 162 :V 1t0tV 154 :D T0287 164 :FY 1t0tV 156 :WY T0287 167 :NLKT 1t0tV 159 :LSME Number of specific fragments extracted= 3 number of extra gaps= 2 total=14709 # 1t0hB.162.88 read from T0287.t2k.many.frag # found chain 1t0hB in template set T0287 162 :VNFYANLKT 1t0hB 290 :SNTRSSLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14710 # 1rz2A.162.144 read from T0287.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)V162 (1rz2A)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1rz2A)F148 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NF 1rz2A 146 :SM T0287 166 :ANLKT 1rz2A 149 :GSLKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=14712 # 1zavA.162.128 read from T0287.t2k.many.frag # found chain 1zavA in template set T0287 162 :VNFYANLKT 1zavA 128 :VENIAKLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14713 # 1hp1A.162.298 read from T0287.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)A166 (1hp1A)P337 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFY 1hp1A 333 :VLYT T0287 167 :NLKT 1hp1A 338 :EIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14715 # 1xdnA.162.71 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)F164 (1xdnA)F121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VN 1xdnA 119 :EN T0287 167 :NLKT 1xdnA 124 :YHIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14717 # 1g5aA.162.105 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYA 1g5aA 106 :DLFAG T0287 168 :LKT 1g5aA 112 :LKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=14719 # 1zdyA.162.128 read from T0287.t2k.many.frag # found chain 1zdyA in template set T0287 162 :VNFYANLKT 1zdyA 129 :MPGVAELSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14720 # 1dqzA.162.44 read from T0287.t2k.many.frag # found chain 1dqzA in training set T0287 162 :VNFYANLKT 1dqzA 47 :NGWDINTPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14721 # 1fo8A.162.74 read from T0287.t2k.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)F164 (1fo8A)F181 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VN 1fo8A 179 :RK T0287 165 :YANLKT 1fo8A 182 :QGYYKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14723 # 2ex0A.162.177 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 162 :VNFYANLKT 2ex0A 202 :TDYFEKAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14724 # 1ngmB.162.35 read from T0287.t2k.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 162 :VNFY 1ngmB 470 :LNAH T0287 167 :NLKT 1ngmB 475 :LNEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14726 # 1i60A.162.251 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 162 :VNFYANLKT 1i60A 252 :YYKLTAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14727 # 1txoA.162.198 read from T0287.t2k.many.frag # found chain 1txoA in template set T0287 162 :VNFYANLKT 1txoA 202 :ILEALQIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14728 # 1qgiA.162.120 read from T0287.t2k.many.frag # found chain 1qgiA in training set T0287 162 :VNFYANLKT 1qgiA 121 :KVFCGKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14729 # 2ar0A.162.485 read from T0287.t2k.many.frag # found chain 2ar0A in template set T0287 162 :VNFYANLKT 2ar0A 486 :VLAAEAMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14730 # 1gw5S.163.75 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 163 :NFYANLKTI 1gw5S 76 :NNLAYLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14731 # 1xg8A.163.19 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 163 :NFYANLKTI 1xg8A 11 :ASCVNAPTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14732 # 1josA.163.62 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 163 :NFYANLKTI 1josA 63 :AIEQGMKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14733 # 1e0tA.163.316 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTI 1e0tA 322 :LEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14734 # 2c60A.163.78 read from T0287.t2k.many.frag # found chain 2c60A in template set T0287 163 :NFYANLKTI 2c60A 92 :ILLKNQDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14735 # 2bgcA.163.206 read from T0287.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N167 (2bgcA)N210 because D (zeta) conformation "forbidden" or filtered. T0287 163 :NFYA 2bgcA 206 :FYVQ T0287 168 :LKTI 2bgcA 211 :LDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14737 # 1dmgA.163.23 read from T0287.t2k.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1dmgA)P28 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 1dmgA 26 :ID T0287 167 :NLKTI 1dmgA 29 :NYDVM Number of specific fragments extracted= 2 number of extra gaps= 2 total=14739 # 1h5rA.163.184 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 163 :NFYAN 1h5rA 185 :QMAKN T0287 170 :TI 1h5rA 192 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=14741 # 1g5aA.163.106 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFY 1g5aA 107 :LFA T0287 168 :LKTI 1g5aA 112 :LKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14743 # 1uf3A.163.12 read from T0287.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. T0287 163 :NF 1uf3A 13 :NP T0287 166 :ANLKTI 1uf3A 16 :GDLEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14745 # 2ex0A.163.178 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 163 :NFYANLKTI 2ex0A 203 :DYFEKAEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14746 # 1rcwA.163.106 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 163 :NFYANLKTI 1rcwA 107 :EAHEPSEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14747 # 1l3lA.163.143 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)N163 (1l3lA)D144 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1l3lA 145 :AVAAAATI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14748 # 1thtA.163.241 read from T0287.t2k.many.frag # found chain 1thtA in template set T0287 163 :NFYANLKTI 1thtA 242 :DLGENLVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14749 # 1xdnA.163.72 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NFY 1xdnA 120 :NFF T0287 167 :NLKTI 1xdnA 124 :YHILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14751 # 1vk4A.163.189 read from T0287.t2k.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NFYA 1vk4A 178 :ETLT T0287 168 :LKTI 1vk4A 183 :TNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14753 # 1vliA.163.260 read from T0287.t2k.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE at template residue (1vliA)S249 T0287 164 :FYANLKTI 1vliA 250 :FALNPDEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14754 # 1fm0D.163.19 read from T0287.t2k.many.frag # found chain 1fm0D in training set T0287 163 :NFYANLKTI 1fm0D 20 :EVAADFPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14755 # 1rz2A.163.145 read from T0287.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 163 :N 1rz2A 146 :S T0287 165 :YANLKTI 1rz2A 148 :FGSLKKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=14757 # 1wo8A.163.104 read from T0287.t2k.many.frag # found chain 1wo8A in template set T0287 163 :NFYANLKTI 1wo8A 105 :PLATNLVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14758 # 1uhvA.163.73 read from T0287.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)A166 (1uhvA)Y77 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1uhvA)N78 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFY 1uhvA 74 :KPF T0287 168 :LKTI 1uhvA 79 :FTYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14760 # 1t0hB.163.89 read from T0287.t2k.many.frag # found chain 1t0hB in template set T0287 163 :NFYANLKTI 1t0hB 291 :NTRSSLAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14761 # 1qnrA.163.132 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 163 :NFYANLKTI 1qnrA 133 :TWYTNTAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14762 # 1rkuA.163.62 read from T0287.t2k.many.frag # found chain 1rkuA in training set T0287 163 :NFYANLKTI 1rkuA 62 :EVIATLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14763 # 1eokA.163.56 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N163 (1eokA)G57 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1eokA)S61 because G (3-10) conformation "forbidden" or filtered. T0287 164 :FYA 1eokA 58 :MMG T0287 168 :LKTI 1eokA 62 :FKSY Number of specific fragments extracted= 2 number of extra gaps= 2 total=14765 # 1txoA.163.199 read from T0287.t2k.many.frag # found chain 1txoA in template set T0287 163 :NFYANLKTI 1txoA 203 :LEALQIPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14766 # 1fo8A.163.75 read from T0287.t2k.many.frag # found chain 1fo8A in training set T0287 163 :NFYANLKTI 1fo8A 180 :KFQGYYKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14767 # 1t77A.163.316 read from T0287.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0287)N163 (1t77A)E2392 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1t77A 2393 :LPPWAKTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=14768 # 2bw4A.163.190 read from T0287.t2k.many.frag # found chain 2bw4A in template set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0287 163 :NFYA 2bw4A 191 :GNYK T0287 169 :KTI 2bw4A 197 :ETP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14770 # 1f06A.163.86 read from T0287.t2k.many.frag # found chain 1f06A in template set T0287 163 :NFYANLKTI 1f06A 87 :DTYDNHRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14771 # 1xg8A.164.20 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 164 :FYANLKTIE 1xg8A 12 :SCVNAPTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14772 # 1josA.164.63 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 164 :FYANLKTIE 1josA 64 :IEQGMKGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14773 # 1gw5S.164.76 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 164 :FYANLKTIE 1gw5S 77 :NLAYLEAIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14774 # 1e0tA.164.317 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIE 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14775 # 1dmgA.164.24 read from T0287.t2k.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)A166 (1dmgA)P28 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 1dmgA 26 :ID T0287 167 :NLKTIE 1dmgA 29 :NYDVMW Number of specific fragments extracted= 2 number of extra gaps= 1 total=14777 # 1xdnA.164.73 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 164 :FYANLKTIE 1xdnA 121 :FFGYHILID Number of specific fragments extracted= 1 number of extra gaps= 0 total=14778 # 1uf3A.164.13 read from T0287.t2k.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. T0287 164 :F 1uf3A 14 :P T0287 166 :ANLKTIE 1uf3A 16 :GDLEALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14780 # 2c60A.164.79 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FYA 2c60A 93 :LLK T0287 168 :LKTIE 2c60A 97 :QDDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14782 # 1t77A.164.317 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 164 :FYANLKTIE 1t77A 2393 :LPPWAKTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14783 # 2bgcA.164.207 read from T0287.t2k.many.frag # found chain 2bgcA in template set T0287 164 :FYANLKTIE 2bgcA 207 :YVQNLDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14784 # 1g5aA.164.107 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :FY 1g5aA 108 :FA T0287 167 :NLKTIE 1g5aA 111 :DLKGLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14786 # 1eokA.164.57 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 164 :FYANLKTIE 1eokA 58 :MMGSFKSYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14787 # 2ex0A.164.179 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 164 :FYANLKTIE 2ex0A 204 :YFEKAEFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14788 # 1wo8A.164.105 read from T0287.t2k.many.frag # found chain 1wo8A in template set T0287 164 :FYANLKTIE 1wo8A 106 :LATNLVAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14789 # 1vliA.164.261 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 164 :FYANLKTIE 1vliA 250 :FALNPDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14790 # 1thtA.164.242 read from T0287.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)F164 (1thtA)L243 because G (3-10) conformation "forbidden" or filtered. T0287 165 :YANLKTIE 1thtA 244 :GENLVVLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=14791 # 1f06A.164.87 read from T0287.t2k.many.frag # found chain 1f06A in template set T0287 164 :FYANLKTIE 1f06A 88 :TYDNHRDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14792 # 1wa5C.164.75 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 164 :FYANLKTIE 1wa5C 76 :HLLPANNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14793 # 1rcwA.164.107 read from T0287.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 1rcwA 108 :AHE T0287 168 :LKTIE 1rcwA 112 :SEAAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14795 # 2ak3A.164.164 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 164 :FYANLKTIE 2ak3A 164 :PETVVKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14796 # 2exrA.164.447 read from T0287.t2k.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)N167 (2exrA)K451 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 2exrA 448 :PCA T0287 168 :LKTIE 2exrA 452 :VSSVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14798 # 1t0hB.164.90 read from T0287.t2k.many.frag # found chain 1t0hB in template set T0287 164 :FYANLKTIE 1t0hB 292 :TRSSLAEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14799 # 1xrjA.164.210 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 164 :FYANLKTIE 1xrjA 211 :GADNLVAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14800 # 1vjuA.164.142 read from T0287.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1vjuA)Y143 T0287 165 :YANLKTIE 1vjuA 144 :YAVEEDCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=14801 # 1uhvA.164.74 read from T0287.t2k.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)A166 (1uhvA)Y77 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1uhvA)N78 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 1uhvA 75 :PF T0287 168 :LKTIE 1uhvA 79 :FTYID Number of specific fragments extracted= 2 number of extra gaps= 1 total=14803 # 1l3lA.164.144 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 164 :FYANLKTIE 1l3lA 145 :AVAAAATIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14804 # 1f35A.164.113 read from T0287.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FY 1f35A 115 :MD T0287 167 :NLKTIE 1f35A 118 :NEADAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14806 # 2fb5A.164.42 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 164 :FYANLKTIE 2fb5A 43 :ILCKMEDIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14807 # 1h5rA.164.185 read from T0287.t2k.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 164 :FYAN 1h5rA 186 :MAKN T0287 170 :TIE 1h5rA 192 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=14809 # 2al2A.164.213 read from T0287.t2k.many.frag # found chain 2al2A in template set T0287 164 :FYANLKTIE 2al2A 214 :VAPNIQTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14810 # 1xg8A.165.21 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YANL 1xg8A 13 :CVNA T0287 170 :TIEQ 1xg8A 18 :TSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14812 # 1josA.165.64 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 165 :YANLKTIEQ 1josA 65 :EQGMKGLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14813 # 1gw5S.165.77 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 165 :YANLKTIEQ 1gw5S 78 :LAYLEAIHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14814 # 1e0tA.165.318 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14815 # 1t77A.165.318 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 165 :YANLKTIEQ 1t77A 2394 :PPWAKTSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14816 # 1eokA.165.58 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 165 :YANLKTIEQ 1eokA 59 :MGSFKSYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14817 # 1uf3A.165.14 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 165 :YANLKTIEQ 1uf3A 15 :MGDLEALEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14818 # 1vliA.165.262 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 165 :YANLKTIEQ 1vliA 251 :ALNPDELKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14819 # 2ex0A.165.180 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 165 :YANLKTIEQ 2ex0A 205 :FEKAEFLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14820 # 1dmgA.165.25 read from T0287.t2k.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)A166 (1dmgA)P28 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 1dmgA 27 :D T0287 167 :NLKTIEQ 1dmgA 29 :NYDVMWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=14822 # 1g5aA.165.108 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1g5aA 109 :A T0287 168 :LKTIEQ 1g5aA 112 :LKGLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=14824 # 2exrA.165.448 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 165 :YANLKTIEQ 2exrA 449 :CAKVSSVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14825 # 2c60A.165.80 read from T0287.t2k.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :YA 2c60A 94 :LK T0287 168 :LKTIEQ 2c60A 97 :QDDLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=14827 # 1wa5C.165.76 read from T0287.t2k.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)N167 (1wa5C)P79 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YA 1wa5C 77 :LL T0287 168 :LKTIEQ 1wa5C 80 :ANNVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=14829 # 1xdnA.165.74 read from T0287.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 166 :ANLKTIEQ 1xdnA 123 :GYHILIDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=14830 # 2ak3A.165.165 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 165 :YANLKTIEQ 2ak3A 165 :ETVVKRLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14831 # 2bgcA.165.208 read from T0287.t2k.many.frag # found chain 2bgcA in template set T0287 165 :YANLKTIEQ 2bgcA 208 :VQNLDYLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14832 # 1e4fT.165.163 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 165 :YANLKTIEQ 1e4fT 164 :VVPLKVYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14833 # 1wo8A.165.106 read from T0287.t2k.many.frag # found chain 1wo8A in template set T0287 165 :YANLKTIEQ 1wo8A 107 :ATNLVAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14834 # 1f06A.165.88 read from T0287.t2k.many.frag # found chain 1f06A in template set T0287 165 :YANLKTIEQ 1f06A 89 :YDNHRDIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14835 # 1vjuA.165.143 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 165 :YANLKTIEQ 1vjuA 144 :YAVEEDCRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14836 # 1xrjA.165.211 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 165 :YANLKTIEQ 1xrjA 212 :ADNLVAINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14837 # 1auoA.165.77 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 165 :YANLKTIEQ 1auoA 78 :SISLEELEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14838 # 2fb5A.165.43 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 165 :YANLKTIEQ 2fb5A 44 :LCKMEDIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14839 # 1rcwA.165.108 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 165 :YANLKTIEQ 1rcwA 109 :HEPSEAAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14840 # 1ryiA.165.281 read from T0287.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1ryiA)D271 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 165 :Y 1ryiA 269 :T T0287 168 :LKTIEQ 1ryiA 272 :LGGLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=14842 # 1wdaA.165.535 read from T0287.t2k.many.frag # found chain 1wdaA in template set T0287 165 :YANLKTIEQ 1wdaA 529 :ILSNKTLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14843 # 2al2A.165.214 read from T0287.t2k.many.frag # found chain 2al2A in template set T0287 165 :YANLKTIEQ 2al2A 215 :APNIQTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14844 # 1i60A.165.254 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 165 :YANLKTIEQ 1i60A 255 :LTAEEAIQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14845 # 1f35A.165.114 read from T0287.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1f35A 116 :D T0287 167 :NLKTIEQ 1f35A 118 :NEADALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=14847 # 1gw5S.166.78 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 166 :ANLKTIEQY 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14848 # 1josA.166.65 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 166 :ANLKTIEQY 1josA 66 :QGMKGLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14849 # 1xg8A.166.22 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 166 :ANLKTIEQY 1xg8A 14 :VNAPTSKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14850 # 1e0tA.166.319 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14851 # 1t77A.166.319 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 166 :ANLKTIEQY 1t77A 2395 :PWAKTSEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14852 # 1eokA.166.59 read from T0287.t2k.many.frag # found chain 1eokA in training set T0287 166 :ANLKTIEQY 1eokA 60 :GSFKSYKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14853 # 1rttA.166.57 read from T0287.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0287)A166 (1rttA)G58 because S (epsilon) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1rttA 59 :FPPAVERF Number of specific fragments extracted= 1 number of extra gaps= 1 total=14854 # 1uf3A.166.15 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 166 :ANLKTIEQY 1uf3A 16 :GDLEALEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14855 # 2ak3A.166.166 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 166 :ANLKTIEQY 2ak3A 166 :TVVKRLKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14856 # 1ynbA.166.110 read from T0287.t2k.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)N167 (1ynbA)D112 because P (beta_P) conformation "forbidden" or filtered. T0287 166 :A 1ynbA 111 :P T0287 168 :LKTIEQY 1ynbA 113 :FSDVEVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=14858 # 1xrjA.166.212 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 166 :ANLKTIEQY 1xrjA 213 :DNLVAINLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14859 # 2ex0A.166.181 read from T0287.t2k.many.frag # found chain 2ex0A in template set T0287 166 :ANLKTIEQY 2ex0A 206 :EKAEFLQPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14860 # 1wa5C.166.77 read from T0287.t2k.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)N167 (1wa5C)P79 because P (beta_P) conformation "forbidden" or filtered. T0287 166 :A 1wa5C 78 :L T0287 168 :LKTIEQY 1wa5C 80 :ANNVELI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14862 # 1auoA.166.78 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 166 :ANLKTIEQY 1auoA 79 :ISLEELEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14863 # 1vjuA.166.144 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 166 :ANLKTIEQY 1vjuA 145 :AVEEDCRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14864 # 1ro7A.166.106 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 166 :ANLKTIEQY 1ro7A 107 :DFFKQLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14865 # 2exrA.166.449 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 166 :ANLKTIEQY 2exrA 450 :AKVSSVEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14866 # 1vliA.166.263 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 166 :ANLKTIEQY 1vliA 252 :LNPDELKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14867 # 1xdnA.166.75 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 166 :ANLKTIEQY 1xdnA 123 :GYHILIDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14868 # 2a2mA.166.144 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 166 :ANLKTIEQY 2a2mA 133 :IPGTDIKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14869 # 1g5aA.166.109 read from T0287.t2k.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQY 1g5aA 112 :LKGLKDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=14870 # 1v0wA.166.383 read from T0287.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)S391 T0287 167 :NLKTIEQY 1v0wA 392 :QIKSLSEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14871 # 1e4fT.166.164 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 166 :ANLKTIEQY 1e4fT 165 :VPLKVYEMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14872 # 1i60A.166.255 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 166 :ANLKTIEQY 1i60A 256 :TAEEAIQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14873 # 2fb5A.166.44 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 166 :ANLKTIEQY 2fb5A 45 :CKMEDIHHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14874 # 1dmgA.166.26 read from T0287.t2k.many.frag # found chain 1dmgA in training set T0287 166 :ANLKTIEQY 1dmgA 28 :PNYDVMWRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14875 # 1rcwA.166.109 read from T0287.t2k.many.frag # found chain 1rcwA in template set T0287 166 :ANLKTIEQY 1rcwA 110 :EPSEAAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14876 # 2fb0A.166.68 read from T0287.t2k.many.frag # found chain 2fb0A in template set T0287 166 :ANLKTIEQY 2fb0A 66 :EKTAHFAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14877 # 1t8kA.166.59 read from T0287.t2k.many.frag # found chain 1t8kA in training set T0287 166 :ANLKTIEQY 1t8kA 60 :EKITTVQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14878 # 1wwpA.166.97 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 166 :ANLKTIEQY 1wwpA 98 :AIFRRLPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14879 # 1josA.167.66 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 167 :NLKTIEQYN 1josA 67 :GMKGLEKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14880 # 1gw5S.167.79 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 167 :NLKTIEQYN 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14881 # 1xg8A.167.23 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 167 :NLKTIEQYN 1xg8A 15 :NAPTSKDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14882 # 1t77A.167.320 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 167 :NLKTIEQYN 1t77A 2396 :WAKTSEEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14883 # 1vjuA.167.145 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 167 :NLKTIEQYN 1vjuA 146 :VEEDCRDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14884 # 1rttA.167.58 read from T0287.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0287)N167 (1rttA)F59 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 1rttA 60 :PPAVERFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=14885 # 1ifqA.167.36 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 167 :NLKTIEQYN 1ifqA 26 :SGRDLQQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14886 # 1auoA.167.79 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 167 :NLKTIEQYN 1auoA 80 :SLEELEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14887 # 1e0tA.167.320 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=14888 # 2ak3A.167.167 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 167 :NLKTIEQYN 2ak3A 167 :VVKRLKAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14889 # 1uf3A.167.16 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 167 :NLKTIEQYN 1uf3A 17 :DLEALEKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14890 # 2exrA.167.450 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 167 :NLKTIEQYN 2exrA 451 :KVSSVEKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14891 # 1wa5C.167.78 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 167 :NLKTIEQYN 1wa5C 79 :PANNVELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14892 # 1eokA.167.60 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N167 (1eokA)S61 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 1eokA 62 :FKSYKDLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14893 # 1vliA.167.264 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 167 :NLKTIEQYN 1vliA 253 :NPDELKEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14894 # 1ynbA.167.111 read from T0287.t2k.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 167 :NLKT 1ynbA 112 :DFSD T0287 172 :EQYN 1ynbA 117 :EVYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14896 # 1xrjA.167.213 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 167 :NLKTIEQYN 1xrjA 214 :NLVAINLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14897 # 2a2mA.167.145 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 167 :NLKTIEQYN 2a2mA 134 :PGTDIKDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14898 # 1e4fT.167.165 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 167 :NLKTIEQYN 1e4fT 166 :PLKVYEMFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14899 # 1xdnA.167.76 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 167 :NLKTIEQYN 1xdnA 124 :YHILIDEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14900 # 1i60A.167.256 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 167 :NLKTIEQYN 1i60A 257 :AEEAIQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14901 # 1tr9A.167.310 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 167 :NLKTIEQYN 1tr9A 310 :RLERWQQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14902 # 1ryiA.167.283 read from T0287.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 168 :LKTIEQYN 1ryiA 272 :LGGLESVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=14903 # 1wwpA.167.98 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 167 :NLKTIEQYN 1wwpA 99 :IFRRLPDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14904 # 2cxaA.167.216 read from T0287.t2k.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)N167 (2cxaA)C200 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2cxaA 201 :EIPRRDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14905 # 1ro7A.167.107 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 167 :NLKTIEQYN 1ro7A 108 :FFKQLKDFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14906 # 1itxA.167.143 read from T0287.t2k.many.frag # found chain 1itxA in training set T0287 167 :NLKTIEQYN 1itxA 176 :TAATREVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14907 # 7a3hA.167.240 read from T0287.t2k.many.frag # found chain 7a3hA in training set T0287 167 :NLKTIEQYN 7a3hA 241 :FLDEAQVWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14908 # 1wzdA.167.164 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 167 :NLKTIEQYN 1wzdA 165 :GIAKLKVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14909 # 2fb5A.167.45 read from T0287.t2k.many.frag # found chain 2fb5A in template set T0287 167 :NLKTIEQYN 2fb5A 46 :KMEDIHHML Number of specific fragments extracted= 1 number of extra gaps= 0 total=14910 # 1ifqA.168.37 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 168 :LKTIEQYND 1ifqA 27 :GRDLQQYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14911 # 1josA.168.67 read from T0287.t2k.many.frag # found chain 1josA in training set Warning: unaligning (T0287)Y174 (1josA)A74 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKTIEQ 1josA 68 :MKGLEK T0287 175 :ND 1josA 75 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=14913 # 1ro7A.168.108 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 168 :LKTIEQYND 1ro7A 109 :FKQLKDFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14914 # 1xg8A.168.24 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 168 :LKTIEQYND 1xg8A 16 :APTSKDIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14915 # 1gw5S.168.80 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 168 :LKTIEQYND 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14916 # 1vjuA.168.146 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 168 :LKTIEQYND 1vjuA 147 :EEDCRDFHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14917 # 1vliA.168.265 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 168 :LKTIEQYND 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14918 # 2a2mA.168.146 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 168 :LKTIEQYND 2a2mA 135 :GTDIKDYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14919 # 1wwpA.168.99 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 168 :LKTIEQYND 1wwpA 100 :FRRLPDYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=14920 # 1rttA.168.59 read from T0287.t2k.many.frag # found chain 1rttA in training set T0287 168 :LKTIEQYND 1rttA 60 :PPAVERFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14921 # 1auoA.168.80 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 168 :LKTIEQYND 1auoA 81 :LEELEVSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14922 # 1t77A.168.321 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 168 :LKTIEQYND 1t77A 2397 :AKTSEEFVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14923 # 1ynbA.168.112 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 168 :LKTIEQYND 1ynbA 113 :FSDVEVYVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=14924 # 2exrA.168.451 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 168 :LKTIEQYND 2exrA 452 :VSSVEKMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14925 # 1tr9A.168.311 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 168 :LKTIEQYND 1tr9A 311 :LERWQQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14926 # 1uf3A.168.17 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 168 :LKTIEQYND 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14927 # 1xdnA.168.77 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 168 :LKTIEQYND 1xdnA 125 :HILIDEFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14928 # 1f5qB.168.225 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 168 :LKTIEQYND 1f5qB 226 :KEELHQCCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14929 # 1e0tA.168.321 read from T0287.t2k.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI T0287 176 :D 1e0tA 330 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=14931 # 1eokA.168.61 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)T170 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LK 1eokA 62 :FK T0287 171 :IEQYND 1eokA 65 :YKDLDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=14933 # 2cxaA.168.217 read from T0287.t2k.many.frag # found chain 2cxaA in template set T0287 168 :LKTIEQYND 2cxaA 201 :EIPRRDYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14934 # 2ak3A.168.168 read from T0287.t2k.many.frag # found chain 2ak3A in template set T0287 168 :LKTIEQYND 2ak3A 168 :VKRLKAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14935 # 1xrjA.168.214 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 168 :LKTIEQYND 1xrjA 215 :LVAINLIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14936 # 1wa5C.168.79 read from T0287.t2k.many.frag # found chain 1wa5C in template set T0287 168 :LKTIEQYND 1wa5C 80 :ANNVELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14937 # 1wzdA.168.165 read from T0287.t2k.many.frag # found chain 1wzdA in template set Warning: unaligning (T0287)L168 (1wzdA)I166 because D (zeta) conformation "forbidden" or filtered. T0287 169 :KTIEQYND 1wzdA 167 :AKLKVYKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=14938 # 2fb0A.168.70 read from T0287.t2k.many.frag # found chain 2fb0A in template set T0287 168 :LKTIEQYND 2fb0A 68 :TAHFAQYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14939 # 1e4fT.168.166 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 168 :LKTIEQYND 1e4fT 167 :LKVYEMFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14940 # 1i60A.168.257 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 168 :LKTIEQYND 1i60A 258 :EEAIQTAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14941 # 1xqwA.168.274 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 168 :LKTIEQYND 1xqwA 275 :WEDREGYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=14942 # 2bgcA.168.211 read from T0287.t2k.many.frag # found chain 2bgcA in template set T0287 168 :LKTIEQYND 2bgcA 211 :LDYLKRYAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=14943 # 1ifqA.169.38 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 169 :KTIEQYNDY 1ifqA 28 :RDLQQYQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14944 # 1ro7A.169.109 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 169 :KTIEQYNDY 1ro7A 110 :KQLKDFNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14945 # 1vjuA.169.147 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 169 :KTIEQYNDY 1vjuA 148 :EDCRDFHQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14946 # 1josA.169.68 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 169 :KTIEQYNDY 1josA 69 :KGLEKASPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14947 # 2a2mA.169.147 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 169 :KTIEQYNDY 2a2mA 136 :TDIKDYADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14948 # 1xdnA.169.78 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 169 :KTIEQYNDY 1xdnA 126 :ILIDEFTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14949 # 1wwpA.169.100 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 169 :KTIEQYNDY 1wwpA 101 :RRLPDYARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14950 # 1auoA.169.81 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 169 :KTIEQYNDY 1auoA 82 :EELEVSAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14951 # 1vliA.169.266 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 169 :KTIEQYNDY 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=14952 # 1f5qB.169.226 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 169 :KTIEQYNDY 1f5qB 227 :EELHQCCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14953 # 1xqwA.169.275 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 169 :KTIEQYNDY 1xqwA 276 :EDREGYNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14954 # 1xg8A.169.25 read from T0287.t2k.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 170 :TIEQYNDY 1xg8A 18 :TSKDIYDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=14955 # 1rttA.169.60 read from T0287.t2k.many.frag # found chain 1rttA in training set T0287 169 :KTIEQYNDY 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14956 # 1gw5S.169.81 read from T0287.t2k.many.frag # found chain 1gw5S in template set T0287 169 :KTIEQYNDY 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14957 # 1qwtA.169.230 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 169 :KTIEQYNDY 1qwtA 403 :LTSDQYKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14958 # 1tr9A.169.312 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 169 :KTIEQYNDY 1tr9A 312 :ERWQQASAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=14959 # 1t77A.169.322 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 169 :KTIEQYNDY 1t77A 2398 :KTSEEFVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14960 # 1uf3A.169.18 read from T0287.t2k.many.frag # found chain 1uf3A in template set T0287 169 :KTIEQYNDY 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14961 # 1wzdA.169.166 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 169 :KTIEQYNDY 1wzdA 167 :AKLKVYKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14962 # 2f1rA.169.146 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 169 :KTIEQYNDY 2f1rA 147 :DEVERIAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14963 # 1ynbA.169.113 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 169 :KTIEQYNDY 1ynbA 114 :SDVEVYVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14964 # 2exrA.169.452 read from T0287.t2k.many.frag # found chain 2exrA in template set T0287 169 :KTIEQYNDY 2exrA 453 :SSVEKMVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14965 # 1xrjA.169.215 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 169 :KTIEQYNDY 1xrjA 216 :VAINLIVQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=14966 # 1lvaA.169.198 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 169 :KTIEQYNDY 1lvaA 575 :QALGEAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14967 # 1e4fT.169.167 read from T0287.t2k.many.frag # found chain 1e4fT in template set T0287 169 :KTIEQYNDY 1e4fT 168 :KVYEMFYNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14968 # 1wduA.169.127 read from T0287.t2k.many.frag # found chain 1wduA in template set T0287 169 :KTIEQYNDY 1wduA 131 :KPIESYLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14969 # 1eokA.169.62 read from T0287.t2k.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)T170 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0287 169 :K 1eokA 63 :K T0287 171 :IEQYNDY 1eokA 65 :YKDLDTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=14971 # 1qnrA.169.138 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 169 :KTIEQYNDY 1qnrA 139 :AAQTQYRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14972 # 1z7aA.169.226 read from T0287.t2k.many.frag # found chain 1z7aA in template set T0287 169 :KTIEQYNDY 1z7aA 227 :NNGEQFFQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14973 # 2cxaA.169.218 read from T0287.t2k.many.frag # found chain 2cxaA in template set T0287 169 :KTIEQYNDY 2cxaA 202 :IPRRDYLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14974 # 1ifqA.170.39 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 170 :TIEQYNDYV 1ifqA 29 :DLQQYQSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14975 # 1f5qB.170.227 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 170 :TIEQYNDYV 1f5qB 228 :ELHQCCDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14976 # 1vjuA.170.148 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 170 :TIEQYNDYV 1vjuA 149 :DCRDFHQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14977 # 1ro7A.170.110 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 170 :TIEQYNDYV 1ro7A 111 :QLKDFNAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=14978 # 2a2mA.170.148 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 170 :TIEQYNDYV 2a2mA 137 :DIKDYADYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=14979 # 1xqwA.170.276 read from T0287.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)T170 (1xqwA)D277 because D (zeta) conformation "forbidden" or filtered. T0287 171 :IEQYNDYV 1xqwA 278 :REGYNKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=14980 # 1wwpA.170.101 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 170 :TIEQYNDYV 1wwpA 102 :RLPDYARLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14981 # 1josA.170.69 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 170 :TIEQYNDYV 1josA 70 :GLEKASPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14982 # 1qwtA.170.231 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 170 :TIEQYNDYV 1qwtA 404 :TSDQYKAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14983 # 1xdnA.170.79 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 170 :TIEQYNDYV 1xdnA 127 :LIDEFTAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14984 # 1auoA.170.82 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 170 :TIEQYNDYV 1auoA 83 :ELEVSAKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14985 # 1vliA.170.267 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 170 :TIEQYNDYV 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14986 # 1wzdA.170.167 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 170 :TIEQYNDYV 1wzdA 168 :KLKVYKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=14987 # 1wduA.170.128 read from T0287.t2k.many.frag # found chain 1wduA in template set T0287 170 :TIEQYNDYV 1wduA 132 :PIESYLEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14988 # 1xg8A.170.26 read from T0287.t2k.many.frag # found chain 1xg8A in template set T0287 170 :TIEQYNDYV 1xg8A 18 :TSKDIYDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14989 # 1tr9A.170.313 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 170 :TIEQYNDYV 1tr9A 313 :RWQQASANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=14990 # 1qnrA.170.139 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 170 :TIEQYNDYV 1qnrA 140 :AQTQYRKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14991 # 1lvaA.170.199 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 170 :TIEQYNDYV 1lvaA 576 :ALGEAREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14992 # 1wdaA.170.540 read from T0287.t2k.many.frag # found chain 1wdaA in template set T0287 170 :TIEQYNDYV 1wdaA 534 :TLREHNSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14993 # 1rttA.170.61 read from T0287.t2k.many.frag # found chain 1rttA in training set T0287 170 :TIEQYNDYV 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14994 # 1jl1A.170.128 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 170 :TIEQYNDYV 1jl1A 129 :ENERADELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14995 # 1ynbA.170.114 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 170 :TIEQYNDYV 1ynbA 115 :DVEVYVSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14996 # 1wouA.170.44 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 170 :TIEQYNDYV 1wouA 45 :DCVQAEPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=14997 # 2f1rA.170.147 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 170 :TIEQYNDYV 2f1rA 148 :EVERIAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14998 # 1ntyA.170.294 read from T0287.t2k.many.frag # found chain 1ntyA in training set T0287 170 :TIEQYNDYV 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=14999 # 1tqhA.170.229 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 170 :TIEQYNDYV 1tqhA 230 :EKDQLHEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15000 # 1nznA.170.88 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 170 :TIEQYNDYV 1nznA 89 :EYEKALKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15001 # 1oltA.170.80 read from T0287.t2k.many.frag # found chain 1oltA in template set T0287 170 :TIEQYNDYV 1oltA 81 :KADQYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15002 # 1xrjA.170.216 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 170 :TIEQYNDYV 1xrjA 217 :AINLIVQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15003 # 2cxaA.170.219 read from T0287.t2k.many.frag # found chain 2cxaA in template set T0287 170 :TIEQYNDYV 2cxaA 203 :PRRDYLNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15004 # 1f5qB.171.228 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 171 :IEQYNDYVR 1f5qB 229 :LHQCCDLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15005 # 1ifqA.171.40 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 171 :IEQYNDYVR 1ifqA 30 :LQQYQSQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15006 # 1vjuA.171.149 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 171 :IEQYNDYVR 1vjuA 150 :CRDFHQVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15007 # 2a2mA.171.149 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 171 :IEQYNDYVR 2a2mA 138 :IKDYADYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15008 # 1ro7A.171.111 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 171 :IEQYNDYVR 1ro7A 112 :LKDFNAYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15009 # 1xqwA.171.277 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 171 :IEQYNDYVR 1xqwA 278 :REGYNKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15010 # 1wwpA.171.102 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 171 :IEQYNDYVR 1wwpA 103 :LPDYARLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=15011 # 1qwtA.171.232 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 171 :IEQYNDYVR 1qwtA 405 :SDQYKAYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15012 # 1auoA.171.83 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 171 :IEQYNDYVR 1auoA 84 :LEVSAKMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15013 # 1wzdA.171.168 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 171 :IEQYNDYVR 1wzdA 169 :LKVYKDEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15014 # 1xdnA.171.80 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 171 :IEQYNDYVR 1xdnA 128 :IDEFTAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15015 # 1josA.171.70 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 171 :IEQYNDYVR 1josA 71 :LEKASPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15016 # 1lvaA.171.200 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 171 :IEQYNDYVR 1lvaA 577 :LGEAREVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15017 # 1jl1A.171.129 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 171 :IEQYNDYVR 1jl1A 130 :NERADELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15018 # 1vliA.171.268 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 171 :IEQYNDYVR 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15019 # 1b3tA.171.111 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 171 :IEQYNDYVR 1b3tA 572 :AEVLKDAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15020 # 1wduA.171.129 read from T0287.t2k.many.frag # found chain 1wduA in template set T0287 171 :IEQYNDYVR 1wduA 133 :IESYLEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15021 # 1nznA.171.89 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 171 :IEQYNDYVR 1nznA 90 :YEKALKYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15022 # 1xodA.171.100 read from T0287.t2k.many.frag # found chain 1xodA in training set T0287 171 :IEQYNDYVR 1xodA 106 :ARAFDRGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15023 # 2f1rA.171.148 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 171 :IEQYNDYVR 2f1rA 149 :VERIAEFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15024 # 1ntyA.171.295 read from T0287.t2k.many.frag # found chain 1ntyA in training set T0287 171 :IEQYNDYVR 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15025 # 2b61A.171.362 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 171 :IEQYNDYVR 2b61A 344 :YDQFEKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15026 # 1xrjA.171.217 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 171 :IEQYNDYVR 1xrjA 218 :INLIVQHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15027 # 1qnrA.171.140 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 171 :IEQYNDYVR 1qnrA 141 :QTQYRKYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15028 # 1oltA.171.81 read from T0287.t2k.many.frag # found chain 1oltA in template set T0287 171 :IEQYNDYVR 1oltA 82 :ADQYLDALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15029 # 1wouA.171.45 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 171 :IEQYNDYVR 1wouA 46 :CVQAEPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15030 # 1ynbA.171.115 read from T0287.t2k.many.frag # found chain 1ynbA in training set T0287 171 :IEQYNDYVR 1ynbA 116 :VEVYVSDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15031 # 1tqhA.171.230 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 171 :IEQYNDYVR 1tqhA 231 :KDQLHEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15032 # 1w9cA.171.301 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 171 :IEQYNDYVR 1w9cA 1008 :IPAFKEHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15033 # 1l5oA.171.209 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 171 :IEQYNDYVR 1l5oA 210 :IDNKVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15034 # 1f5qB.172.229 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 172 :EQYNDYVRD 1f5qB 230 :HQCCDLVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15035 # 1ifqA.172.41 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 172 :EQYNDYVRD 1ifqA 31 :QQYQSQAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15036 # 1xqwA.172.278 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 172 :EQYNDYVRD 1xqwA 279 :EGYNKLLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15037 # 2a2mA.172.150 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 172 :EQYNDYVRD 2a2mA 139 :KDYADYEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15038 # 1vjuA.172.150 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 172 :EQYNDYVRD 1vjuA 151 :RDFHQVAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15039 # 1qwtA.172.233 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 172 :EQYNDYVRD 1qwtA 406 :DQYKAYLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15040 # 1wzdA.172.169 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 172 :EQYNDYVRD 1wzdA 170 :KVYKDEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15041 # 1jl1A.172.130 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 172 :EQYNDYVRD 1jl1A 131 :ERADELARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15042 # 1auoA.172.84 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 172 :EQYNDYVRD 1auoA 85 :EVSAKMVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15043 # 1b3tA.172.112 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 172 :EQYNDYVRD 1b3tA 573 :EVLKDAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15044 # 1nznA.172.90 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 172 :EQYNDYVRD 1nznA 91 :EKALKYVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15045 # 1ro7A.172.112 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 172 :EQYNDYVRD 1ro7A 113 :KDFNAYFKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15046 # 1wwpA.172.103 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 172 :EQYNDYVRD 1wwpA 104 :PDYARLMEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15047 # 1lvaA.172.201 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 172 :EQYNDYVRD 1lvaA 578 :GEAREVIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15048 # 1uddA.172.110 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 172 :EQYNDYVRD 1uddA 111 :SAYMDFMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15049 # 1xdnA.172.81 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 172 :EQYNDYVRD 1xdnA 129 :DEFTAQIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15050 # 1l5oA.172.210 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 172 :EQYNDYVRD 1l5oA 211 :DNKVDVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15051 # 2f1rA.172.149 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 172 :EQYNDYVRD 2f1rA 150 :ERIAEFILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15052 # 1josA.172.71 read from T0287.t2k.many.frag # found chain 1josA in training set Warning: unaligning (T0287)Y174 (1josA)A74 because G (3-10) conformation "forbidden" or filtered. T0287 172 :EQ 1josA 72 :EK T0287 175 :NDYVRD 1josA 75 :SPYIRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15054 # 1z77A.172.125 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 172 :EQYNDYVRD 1z77A 126 :RVFFDFVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15055 # 1w9cA.172.302 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 172 :EQYNDYVRD 1w9cA 1009 :PAFKEHLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15056 # 2b61A.172.363 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 172 :EQYNDYVRD 2b61A 345 :DQFEKRIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15057 # 1o6dA.172.80 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 172 :EQYNDYVRD 1o6dA 79 :EEFADFLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15058 # 1xodA.172.101 read from T0287.t2k.many.frag # found chain 1xodA in training set T0287 172 :EQYNDYVRD 1xodA 107 :RAFDRGIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15059 # 1wdaA.172.542 read from T0287.t2k.many.frag # found chain 1wdaA in template set T0287 172 :EQYNDYVRD 1wdaA 536 :REHNSFVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=15060 # 2gmfA.172.103 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 172 :EQYNDYVRD 2gmfA 104 :ESFKENLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15061 # 1qnrA.172.141 read from T0287.t2k.many.frag # found chain 1qnrA in training set T0287 172 :EQYNDYVRD 1qnrA 142 :TQYRKYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15062 # 1vliA.172.269 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 172 :EQYNDYVRD 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15063 # 1tqhA.172.231 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 172 :EQYNDYVRD 1tqhA 232 :DQLHEDIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15064 # 1wouA.172.46 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 172 :EQYNDYVRD 1wouA 47 :VQAEPVVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15065 # 1f5qB.173.230 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 173 :QYNDYVRDL 1f5qB 231 :QCCDLVDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15066 # 1ifqA.173.42 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 173 :QYNDYVRDL 1ifqA 32 :QYQSQAKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15067 # 1qwtA.173.234 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 173 :QYNDYVRDL 1qwtA 407 :QYKAYLQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15068 # 1xqwA.173.279 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 173 :QYNDYVRDL 1xqwA 280 :GYNKLLSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15069 # 1b3tA.173.113 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 173 :QYNDYVRDL 1b3tA 574 :VLKDAIKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15070 # 1vjuA.173.151 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 173 :QYNDYVRDL 1vjuA 152 :DFHQVAQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15071 # 1jl1A.173.131 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 173 :QYNDYVRDL 1jl1A 132 :RADELARAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15072 # 1auoA.173.85 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 173 :QYNDYVRDL 1auoA 86 :VSAKMVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15073 # 2a2mA.173.151 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 173 :QYNDYVRDL 2a2mA 140 :DYADYEAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15074 # 1wzdA.173.170 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 173 :QYNDYVRDL 1wzdA 171 :VYKDEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15075 # 1lvaA.173.202 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 173 :QYNDYVRDL 1lvaA 579 :EAREVIKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15076 # 1z77A.173.126 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 173 :QYNDYVRDL 1z77A 127 :VFFDFVREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15077 # 2b61A.173.364 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 173 :QYNDYVRDL 2b61A 346 :QFEKRIRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15078 # 1nznA.173.91 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 173 :QYNDYVRDL 1nznA 92 :KALKYVRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15079 # 2gmfA.173.104 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 173 :QYNDYVRDL 2gmfA 105 :SFKENLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15080 # 2f1rA.173.150 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 173 :QYNDYVRDL 2f1rA 151 :RIAEFILSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15081 # 1wwpA.173.104 read from T0287.t2k.many.frag # found chain 1wwpA in template set T0287 173 :QYNDYVRDL 1wwpA 105 :DYARLMEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15082 # 1ro7A.173.113 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 173 :QYNDYVRDL 1ro7A 114 :DFNAYFKFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15083 # 1l5oA.173.211 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 173 :QYNDYVRDL 1l5oA 212 :NKVDVVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15084 # 1w9cA.173.303 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 173 :QYNDYVRDL 1w9cA 1010 :AFKEHLRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15085 # 1xdnA.173.82 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 173 :QYNDYVRDL 1xdnA 130 :EFTAQIRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15086 # 1wouA.173.47 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 173 :QYNDYVRDL 1wouA 48 :QAEPVVREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15087 # 1xodA.173.102 read from T0287.t2k.many.frag # found chain 1xodA in training set T0287 173 :QYNDYVRDL 1xodA 108 :AFDRGIRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15088 # 1izmA.173.155 read from T0287.t2k.many.frag # found chain 1izmA in template set T0287 173 :QYNDYVRDL 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15089 # 2d0tA.173.304 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 173 :QYNDY 2d0tA 302 :AHRNF T0287 180 :DL 2d0tA 309 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15091 # 1josA.173.72 read from T0287.t2k.many.frag # found chain 1josA in training set T0287 173 :QYNDYVRDL 1josA 73 :KASPYIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15092 # 1tqhA.173.232 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 173 :QYNDYVRDL 1tqhA 233 :QLHEDIYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15093 # 1xrjA.173.219 read from T0287.t2k.many.frag # found chain 1xrjA in template set T0287 173 :QYNDYVRDL 1xrjA 220 :LIVQHIQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15094 # 1jl0A.173.262 read from T0287.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)Q173 (1jl0A)S263 because E (beta_S) conformation "forbidden" or filtered. T0287 174 :YNDYVRDL 1jl0A 264 :YDDLIRKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15095 # 1vliA.173.270 read from T0287.t2k.many.frag # found chain 1vliA in template set T0287 173 :QYNDYVRDL 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15096 # 1f5qB.174.231 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 174 :YNDYVRDLL 1f5qB 232 :CCDLVDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15097 # 1ifqA.174.43 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 174 :YNDYVRDLL 1ifqA 33 :YQSQAKQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15098 # 1qwtA.174.235 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 174 :YNDYVRDLL 1qwtA 408 :YKAYLQDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15099 # 1b3tA.174.114 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 174 :YNDYVRDLL 1b3tA 575 :LKDAIKDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15100 # 1jl1A.174.132 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 174 :YNDYVRDLL 1jl1A 133 :ADELARAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15101 # 1z77A.174.127 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 174 :YNDYVRDLL 1z77A 128 :FFDFVREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15102 # 1xqwA.174.280 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 174 :YNDYVRDLL 1xqwA 281 :YNKLLSDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15103 # 1nznA.174.92 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 174 :YNDYVRDLL 1nznA 93 :ALKYVRGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15104 # 1vjuA.174.152 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 174 :YNDYVRDLL 1vjuA 153 :FHQVAQDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15105 # 2b61A.174.365 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 174 :YNDYVRDLL 2b61A 347 :FEKRIRDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15106 # 2gmfA.174.105 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 174 :YNDYVRDLL 2gmfA 106 :FKENLKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15107 # 1wzdA.174.171 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 174 :YNDYVRDLL 1wzdA 172 :YKDEYREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15108 # 1lvaA.174.203 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 174 :YNDYVRDLL 1lvaA 580 :AREVIKNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15109 # 1auoA.174.86 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 174 :YNDYVRDLL 1auoA 87 :SAKMVTDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15110 # 2f1rA.174.151 read from T0287.t2k.many.frag # found chain 2f1rA in template set T0287 174 :YNDYVRDLL 2f1rA 152 :IAEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15111 # 1l5oA.174.212 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 174 :YNDYVRDLL 1l5oA 213 :KVDVVRRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15112 # 1w9cA.174.304 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 174 :YNDYVRDLL 1w9cA 1011 :FKEHLRDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15113 # 1wouA.174.48 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 174 :YNDYVRDLL 1wouA 49 :AEPVVREGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15114 # 1l5aA.174.297 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 174 :YNDYVRDLL 1l5aA 298 :SGQAIRSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15115 # 2a2mA.174.152 read from T0287.t2k.many.frag # found chain 2a2mA in template set T0287 174 :YNDYVRDLL 2a2mA 141 :YADYEAYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15116 # 1uddA.174.112 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 174 :YNDYVRDLL 1uddA 113 :YMDFMLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15117 # 1qw9A.174.263 read from T0287.t2k.many.frag # found chain 1qw9A in training set T0287 174 :YNDYVRDLL 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15118 # 2d0tA.174.305 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 174 :YNDY 2d0tA 303 :HRNF T0287 180 :DLL 2d0tA 309 :SLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15120 # 1xdnA.174.83 read from T0287.t2k.many.frag # found chain 1xdnA in training set T0287 174 :YNDYVRDLL 1xdnA 131 :FTAQIRILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15121 # 1o6dA.174.82 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 174 :YNDYVRDLL 1o6dA 81 :FADFLKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15122 # 1izmA.174.156 read from T0287.t2k.many.frag # found chain 1izmA in template set T0287 174 :YNDYVRDLL 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15123 # 1uh4A.174.444 read from T0287.t2k.many.frag # found chain 1uh4A in template set T0287 174 :YNDYVRDLL 1uh4A 445 :FDSWLRGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15124 # 1ro7A.174.114 read from T0287.t2k.many.frag # found chain 1ro7A in training set T0287 174 :YNDYVRDLL 1ro7A 115 :FNAYFKFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15125 # 1x38A.174.11 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 174 :YNDYVRDLL 1x38A 12 :VEDRVADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15126 # 1jl0A.174.263 read from T0287.t2k.many.frag # found chain 1jl0A in training set T0287 174 :YNDYVRDLL 1jl0A 264 :YDDLIRKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15127 # 1f5qB.175.232 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 175 :NDYVRDLLM 1f5qB 233 :CDLVDIAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15128 # 1ifqA.175.44 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 175 :NDYVRDLLM 1ifqA 34 :QSQAKQLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15129 # 1b3tA.175.115 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 175 :NDYVRDLLM 1b3tA 576 :KDAIKDLVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15130 # 1xqwA.175.281 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 175 :NDYVRDLLM 1xqwA 282 :NKLLSDFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15131 # 2gmfA.175.106 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 175 :NDYVRDLLM 2gmfA 107 :KENLKDFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15132 # 1qwtA.175.236 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 175 :NDYVRDLLM 1qwtA 409 :KAYLQDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15133 # 1z77A.175.128 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 175 :NDYVRDLLM 1z77A 129 :FDFVREKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15134 # 1jl1A.175.133 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 175 :NDYVRDLLM 1jl1A 134 :DELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15135 # 1vjuA.175.153 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 175 :NDYVRDLLM 1vjuA 154 :HQVAQDLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15136 # 1nznA.175.93 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 175 :NDYVRDLLM 1nznA 94 :LKYVRGLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15137 # 1wzdA.175.172 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 175 :NDYVRDLLM 1wzdA 173 :KDEYREKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15138 # 2b61A.175.366 read from T0287.t2k.many.frag # found chain 2b61A in template set T0287 175 :NDYVRDLLM 2b61A 348 :EKRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15139 # 1lvaA.175.204 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 175 :NDYVRDLLM 1lvaA 581 :REVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15140 # 1wouA.175.49 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 175 :NDYVRDLLM 1wouA 50 :EPVVREGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15141 # 1x38A.175.12 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 175 :NDYVRDLLM 1x38A 13 :EDRVADLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15142 # 1auoA.175.87 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 175 :NDYVRDLLM 1auoA 88 :AKMVTDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15143 # 1w9cA.175.305 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 175 :NDYVRDLLM 1w9cA 1012 :KEHLRDFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15144 # 1l5aA.175.298 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 175 :NDYVRDLLM 1l5aA 299 :GQAIRSLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15145 # 1l5oA.175.213 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 175 :NDYVRDLLM 1l5oA 214 :VDVVRRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15146 # 2f1rA.175.152 read from T0287.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)M183 (2f1rA)R161 because G (3-10) conformation "forbidden" or filtered. T0287 175 :NDYVRDLL 2f1rA 153 :AEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15147 # 1izmA.175.157 read from T0287.t2k.many.frag # found chain 1izmA in template set T0287 175 :NDYVRDLLM 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15148 # 1xrjA.175.221 read from T0287.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)M183 because last residue in template chain is (1xrjA)N230 T0287 175 :NDYVRDLL 1xrjA 222 :VQHIQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15149 # 1tqhA.175.234 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 175 :NDYVRDLLM 1tqhA 235 :HEDIYAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15150 # 2d0tA.175.306 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 175 :NDY 2d0tA 304 :RNF T0287 180 :DLLM 2d0tA 309 :SLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=15152 # 1tr9A.175.318 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 175 :NDYVRDLLM 1tr9A 318 :SANMQRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15153 # 1i60A.175.264 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 175 :NDYVRDLLM 1i60A 265 :KKTTVDVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15154 # 1uddA.175.113 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 175 :NDYVRDLLM 1uddA 114 :MDFMLATAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15155 # 1o6dA.175.83 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 175 :NDYVRDLLM 1o6dA 82 :ADFLKDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15156 # 1llfA.175.358 read from T0287.t2k.many.frag # found chain 1llfA in training set T0287 175 :NDYVRDLLM 1llfA 359 :RAYFKQSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15157 # 1qw9A.175.264 read from T0287.t2k.many.frag # found chain 1qw9A in training set T0287 175 :NDYVRDLLM 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15158 # 1ifqA.176.45 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 176 :DYVRDLLMK 1ifqA 35 :SQAKQLFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15159 # 1f5qB.176.233 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 176 :DYVRDLLMK 1f5qB 234 :DLVDIAIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15160 # 1b3tA.176.116 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 176 :DYVRDLLMK 1b3tA 577 :DAIKDLVMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15161 # 2gmfA.176.107 read from T0287.t2k.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)K184 (2gmfA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 2gmfA 108 :ENLKDFLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15162 # 1x38A.176.13 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 176 :DYVRDLLMK 1x38A 14 :DRVADLLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15163 # 1nznA.176.94 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 176 :DYVRDLLMK 1nznA 95 :KYVRGLLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15164 # 1wzdA.176.173 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 176 :DYVRDLLMK 1wzdA 174 :DEYREKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15165 # 1xqwA.176.282 read from T0287.t2k.many.frag # found chain 1xqwA in template set T0287 176 :DYVRDLLMK 1xqwA 283 :KLLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15166 # 1qwtA.176.237 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 176 :DYVRDLLMK 1qwtA 410 :AYLQDLVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15167 # 1jl1A.176.134 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 176 :DYVRDLLMK 1jl1A 135 :ELARAAAMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15168 # 1z77A.176.129 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 176 :DYVRDLLMK 1z77A 130 :DFVREKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15169 # 1vjuA.176.154 read from T0287.t2k.many.frag # found chain 1vjuA in training set T0287 176 :DYVRDLLMK 1vjuA 155 :QVAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15170 # 2b61A.176.367 read from T0287.t2k.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 2b61A 349 :KRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15171 # 1lvaA.176.205 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 176 :DYVRDLLMK 1lvaA 582 :EVIKNLAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=15172 # 1wouA.176.50 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 176 :DYVRDLLMK 1wouA 51 :PVVREGLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15173 # 1tr9A.176.319 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 176 :DYVRDLLMK 1tr9A 319 :ANMQRLIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15174 # 1l5aA.176.299 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 176 :DYVRDLLMK 1l5aA 300 :QAIRSLYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15175 # 1o6dA.176.84 read from T0287.t2k.many.frag # found chain 1o6dA in training set T0287 176 :DYVRDLLMK 1o6dA 83 :DFLKDLEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15176 # 2d0tA.176.307 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)M183 (2d0tA)S312 because G (3-10) conformation "forbidden" or filtered. T0287 176 :DY 2d0tA 305 :NF T0287 180 :DLL 2d0tA 309 :SLE T0287 184 :K 2d0tA 313 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=15179 # 1w9cA.176.306 read from T0287.t2k.many.frag # found chain 1w9cA in template set T0287 176 :DYVRDLLMK 1w9cA 1013 :EHLRDFLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15180 # 1uddA.176.114 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 176 :DYVRDLLMK 1uddA 115 :DFMLATAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15181 # 1tqhA.176.235 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 176 :DYVRDLLMK 1tqhA 236 :EDIYAFLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=15182 # 1i60A.176.265 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 176 :DYVRDLLMK 1i60A 266 :KTTVDVVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15183 # 1auoA.176.88 read from T0287.t2k.many.frag # found chain 1auoA in training set T0287 176 :DYVRDLLMK 1auoA 89 :KMVTDLIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15184 # 1l5oA.176.214 read from T0287.t2k.many.frag # found chain 1l5oA in training set T0287 176 :DYVRDLLMK 1l5oA 215 :DVVRRAIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15185 # 2f1rA.176.153 read from T0287.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 176 :DYVRDLLM 2f1rA 154 :EFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15186 # 1llfA.176.359 read from T0287.t2k.many.frag # found chain 1llfA in training set T0287 176 :DYVRDLLMK 1llfA 360 :AYFKQSFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15187 # 2arhA.176.171 read from T0287.t2k.many.frag # found chain 2arhA in template set T0287 176 :DYVRDLLMK 2arhA 170 :KEFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15188 # 1ursA.176.216 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 176 :DYVRDLLMK 1ursA 217 :TLMRDMVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15189 # 1yjsA.176.377 read from T0287.t2k.many.frag # found chain 1yjsA in template set T0287 176 :DYVRDLLMK 1yjsA 378 :AIIGLVLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15190 # 1ifqA.177.46 read from T0287.t2k.many.frag # found chain 1ifqA in template set T0287 177 :YVRDLLMKF 1ifqA 36 :QAKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15191 # 1f5qB.177.234 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 177 :YVRDLLMKF 1f5qB 235 :LVDIAIVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15192 # 1b3tA.177.117 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 177 :YVRDLLMKF 1b3tA 578 :AIKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15193 # 1wzdA.177.174 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 177 :YVRDLLMKF 1wzdA 175 :EYREKLNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15194 # 2gmfA.177.108 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 177 :YVRDLLMKF 2gmfA 109 :NLKDFLLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15195 # 1xqwA.177.283 read from T0287.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)F185 (1xqwA)H292 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLMK 1xqwA 284 :LLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15196 # 1x38A.177.14 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 177 :YVRDLLMKF 1x38A 15 :RVADLLGRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15197 # 1qwtA.177.238 read from T0287.t2k.many.frag # found chain 1qwtA in template set Warning: unaligning (T0287)K184 (1qwtA)G418 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1qwtA 411 :YLQDLVE T0287 185 :F 1qwtA 419 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=15199 # 1vjuA.177.155 read from T0287.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F185 (1vjuA)F164 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLMK 1vjuA 156 :VAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=15200 # 1z77A.177.130 read from T0287.t2k.many.frag # found chain 1z77A in template set Warning: unaligning (T0287)K184 (1z77A)D138 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1z77A 131 :FVREKLK T0287 185 :F 1z77A 139 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15202 # 1jl1A.177.135 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 177 :YVRDLLMKF 1jl1A 136 :LARAAAMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15203 # 2b61A.177.368 read from T0287.t2k.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because last residue in template chain is (2b61A)N358 T0287 177 :YVRDLLM 2b61A 350 :RIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15204 # 1tqhA.177.236 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 177 :YVRDLLMKF 1tqhA 237 :DIYAFLESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15205 # 1n69A.177.58 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 177 :YVRDLLMKF 1n69A 57 :IAIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15206 # 1nznA.177.95 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 177 :YVRDLLMKF 1nznA 96 :YVRGLLQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15207 # 1lvaA.177.206 read from T0287.t2k.many.frag # found chain 1lvaA in template set T0287 177 :YVRDLLMKF 1lvaA 583 :VIKNLASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15208 # 1tr9A.177.320 read from T0287.t2k.many.frag # found chain 1tr9A in training set T0287 177 :YVRDLLMKF 1tr9A 320 :NMQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15209 # 1wouA.177.51 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 177 :YVRDLLMKF 1wouA 52 :VVREGLKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15210 # 2b6cA.177.192 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 177 :YVRDLLMKF 2b6cA 190 :WVEELMKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15211 # 1q7eA.177.312 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 177 :YVRDLLMKF 1q7eA 313 :EIEKYTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15212 # 1llfA.177.360 read from T0287.t2k.many.frag # found chain 1llfA in training set T0287 177 :YVRDLLMKF 1llfA 361 :YFKQSFIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15213 # 1yjsA.177.378 read from T0287.t2k.many.frag # found chain 1yjsA in template set T0287 177 :YVRDLLMKF 1yjsA 379 :IIGLVLKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15214 # 2arhA.177.172 read from T0287.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 T0287 177 :YVRDLLMK 2arhA 171 :EFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15215 # 1uddA.177.115 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 177 :YVRDLLMKF 1uddA 116 :FMLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15216 # 1uteA.177.167 read from T0287.t2k.many.frag # found chain 1uteA in training set T0287 177 :YVRDLLMKF 1uteA 168 :WIKKQLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15217 # 2d0tA.177.308 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 177 :Y 2d0tA 306 :F T0287 180 :DLLMKF 2d0tA 309 :SLESNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=15219 # 1i60A.177.266 read from T0287.t2k.many.frag # found chain 1i60A in training set T0287 177 :YVRDLLMKF 1i60A 267 :TTVDVVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15220 # 1ursA.177.217 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 177 :YVRDLLMKF 1ursA 218 :LMRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15221 # 1colA.177.80 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 T0287 177 :YV 1colA 81 :AL T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=15223 # 2f1rA.177.154 read from T0287.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 177 :YVRDLLM 2f1rA 155 :FILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15224 # 1f5qB.178.235 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 178 :VRDLLMKFD 1f5qB 236 :VDIAIVSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15225 # 1ifqA.178.47 read from T0287.t2k.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1ifqA 37 :AKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15226 # 1x38A.178.15 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 178 :VRDLLMKFD 1x38A 16 :VADLLGRMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15227 # 1wzdA.178.175 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 178 :VRDLLMKFD 1wzdA 176 :YREKLNNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15228 # 1n69A.178.59 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 178 :VRDLLMKFD 1n69A 58 :AIQMMMHMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15229 # 1b3tA.178.118 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 178 :VRDLLMKFD 1b3tA 579 :IKDLVMTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15230 # 2gmfA.178.109 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 178 :VRDLLMKFD 2gmfA 110 :LKDFLLVIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15231 # 1nznA.178.96 read from T0287.t2k.many.frag # found chain 1nznA in template set T0287 178 :VRDLLMKFD 1nznA 97 :VRGLLQTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15232 # 2b6cA.178.193 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 178 :VRDLLMKFD 2b6cA 191 :VEELMKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15233 # 1qwtA.178.239 read from T0287.t2k.many.frag # found chain 1qwtA in template set T0287 178 :VRDLLMKFD 1qwtA 412 :LQDLVEGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15234 # 1z77A.178.131 read from T0287.t2k.many.frag # found chain 1z77A in template set Warning: unaligning (T0287)K184 (1z77A)D138 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1z77A 132 :VREKLK T0287 185 :FD 1z77A 139 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15236 # 1jl1A.178.136 read from T0287.t2k.many.frag # found chain 1jl1A in training set Warning: unaligning (T0287)K184 (1jl1A)N143 because D (zeta) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1jl1A 137 :ARAAAM T0287 185 :FD 1jl1A 144 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=15238 # 2d0tA.178.309 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)M183 (2d0tA)S312 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLL 2d0tA 309 :SLE T0287 184 :KF 2d0tA 313 :NP Number of specific fragments extracted= 2 number of extra gaps= 3 total=15240 # 1orc.178.6 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 178 :VRDLLMKFD 1orc 7 :LKDYAMRFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15241 # 1vjuA.178.156 read from T0287.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)D186 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1vjuA 157 :AQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15242 # 1tr9A.178.321 read from T0287.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 178 :VRDLLMKF 1tr9A 321 :MQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15243 # 1tqhA.178.237 read from T0287.t2k.many.frag # found chain 1tqhA in training set T0287 178 :VRDLLMKFD 1tqhA 238 :IYAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15244 # 1yjsA.178.379 read from T0287.t2k.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)M183 (1yjsA)K385 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLL 1yjsA 380 :IGLVL T0287 184 :KFD 1yjsA 386 :NVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=15246 # 1colA.178.81 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 178 :V 1colA 82 :L T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=15248 # 1xqwA.178.284 read from T0287.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)D186 because last residue in template chain is (1xqwA)L293 T0287 178 :VRDLLMKF 1xqwA 285 :LSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15249 # 1uddA.178.116 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 178 :VRDLLMKFD 1uddA 117 :MLATAYKGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15250 # 2arhA.178.173 read from T0287.t2k.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 Warning: unaligning (T0287)D186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arhA)E180 T0287 178 :VRDLLMK 2arhA 172 :FEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15251 # 1yvrA.178.268 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 178 :VRDLLMKFD 1yvrA 269 :WKSLLQDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15252 # 1q7eA.178.313 read from T0287.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0287)K184 (1q7eA)T320 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1q7eA 314 :IEKYTV T0287 185 :FD 1q7eA 321 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=15254 # 1vpjA.178.102 read from T0287.t2k.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1vpjA)T91 T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=15255 # 1j9lA.178.142 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 178 :VRDLLMKFD 1j9lA 143 :LIDFLKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15256 # 1bm8.178.79 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1bm8 83 :AKQLAEKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15257 # 1fo8A.178.90 read from T0287.t2k.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)D186 (1fo8A)N203 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1fo8A 195 :LGQIFHNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15258 # 1wouA.178.52 read from T0287.t2k.many.frag # found chain 1wouA in training set T0287 178 :VRDLLMKFD 1wouA 53 :VREGLKHIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15259 # 1ursA.178.218 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 178 :VRDLLMKFD 1ursA 219 :MRDMVSKYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15260 # 1n69A.179.60 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 179 :RDLLMKFDL 1n69A 59 :IQMMMHMQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15261 # 1f5qB.179.236 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 179 :RDLLMKFDL 1f5qB 237 :DIAIVSFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15262 # 2b6cA.179.194 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 179 :RDLLMKFDL 2b6cA 192 :EELMKELVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15263 # 1x38A.179.16 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 179 :RDLLMKFDL 1x38A 17 :ADLLGRMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15264 # 1orc.179.7 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1orc 8 :KDYAMRF T0287 187 :L 1orc 16 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=15266 # 1wzdA.179.176 read from T0287.t2k.many.frag # found chain 1wzdA in template set Warning: unaligning (T0287)K184 (1wzdA)N182 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 1wzdA 177 :REKLN T0287 185 :FDL 1wzdA 183 :LEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15268 # 1uddA.179.117 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 179 :RDLLMKFDL 1uddA 118 :LATAYKGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15269 # 1ifqA.179.48 read from T0287.t2k.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ifqA 38 :KQLFRKL T0287 187 :L 1ifqA 46 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=15271 # 1b3tA.179.119 read from T0287.t2k.many.frag # found chain 1b3tA in template set T0287 179 :RDLLMKFDL 1b3tA 580 :KDLVMTKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15272 # 1ucdA.179.105 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 179 :RDLLMKFDL 1ucdA 106 :VDMRNNYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15273 # 1colA.179.82 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :L 1colA 91 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=15275 # 1yvrA.179.269 read from T0287.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1yvrA 270 :KSLLQDM T0287 187 :L 1yvrA 278 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15277 # 1j9lA.179.143 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 179 :RDLLMKFDL 1j9lA 144 :IDFLKEFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15278 # 1bm8.179.80 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1bm8 84 :KQLAEKF T0287 187 :L 1bm8 92 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15280 # 2gmfA.179.110 read from T0287.t2k.many.frag # found chain 2gmfA in template set T0287 179 :RDLLMKFDL 2gmfA 111 :KDFLLVIPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15281 # 1zbxB.179.46 read from T0287.t2k.many.frag # found chain 1zbxB in template set T0287 179 :RDLLMKFDL 1zbxB 526 :RAMIDQMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15282 # 1wkcA.179.10 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 179 :RDLLMKFDL 1wkcA 11 :RAAWRRLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15283 # 1ursA.179.219 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 179 :RDLLMKFDL 1ursA 220 :RDMVSKYHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15284 # 1ty9A.179.132 read from T0287.t2k.many.frag # found chain 1ty9A in training set T0287 179 :RDLLMKFDL 1ty9A 133 :DDAWLKRPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15285 # 1z77A.179.132 read from T0287.t2k.many.frag # found chain 1z77A in template set T0287 179 :RDLLMKFDL 1z77A 133 :REKLKDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15286 # 1q7eA.179.314 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 179 :RDLLMKFDL 1q7eA 315 :EKYTVTIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15287 # 1jl1A.179.137 read from T0287.t2k.many.frag # found chain 1jl1A in training set T0287 179 :RDLLMKFDL 1jl1A 138 :RAAAMNPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15288 # 1tqhA.179.238 read from T0287.t2k.many.frag # found chain 1tqhA in training set Warning: unaligning (T0287)L187 because last residue in template chain is (1tqhA)W247 T0287 179 :RDLLMKFD 1tqhA 239 :YAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15289 # 1wusA.179.110 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1wusA 186 :RLALMQ T0287 186 :DL 1wusA 193 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15291 # 1vpjA.179.103 read from T0287.t2k.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=15292 # 1tr9A.179.322 read from T0287.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 179 :RDLLMKF 1tr9A 322 :QRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15293 # 2d0tA.179.310 read from T0287.t2k.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)M183 (2d0tA)S312 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLL 2d0tA 309 :SLE T0287 184 :KFDL 2d0tA 313 :NPSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=15295 # 2lisA.179.89 read from T0287.t2k.many.frag # found chain 2lisA in training set T0287 179 :RDLLMKFDL 2lisA 90 :AEIGRRIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15296 # 1t71A.179.141 read from T0287.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0287)F185 (1t71A)R148 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1t71A 142 :KELILK T0287 186 :DL 1t71A 149 :DC Number of specific fragments extracted= 2 number of extra gaps= 1 total=15298 # 1yjsA.179.380 read from T0287.t2k.many.frag # found chain 1yjsA in template set T0287 179 :RDLLMKFDL 1yjsA 381 :GLVLKNVGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15299 # 1n69A.180.61 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 180 :DLLMKFDLE 1n69A 60 :QMMMHMQPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15300 # 1orc.180.8 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)F185 (1orc)F14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 180 :DLLMK 1orc 9 :DYAMR T0287 187 :LE 1orc 16 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=15302 # 1ucdA.180.106 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 180 :DLLMKFDLE 1ucdA 107 :DMRNNYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=15303 # 1colA.180.83 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LE 1colA 91 :AQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=15305 # 2b6cA.180.195 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 180 :DLLMKFDLE 2b6cA 193 :ELMKELVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15306 # 1x38A.180.17 read from T0287.t2k.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)K184 (1x38A)R22 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1x38A 18 :DLLG T0287 185 :FDLE 1x38A 23 :MTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15308 # 1uddA.180.118 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 180 :DLLMKFDLE 1uddA 119 :ATAYKGNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=15309 # 1f5qB.180.237 read from T0287.t2k.many.frag # found chain 1f5qB in template set T0287 180 :DLLMKFDLE 1f5qB 238 :IAIVSFDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15310 # 1q7eA.180.315 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 180 :DLLMKFDLE 1q7eA 316 :KYTVTIDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15311 # 1j9lA.180.144 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 180 :DLLMKFDLE 1j9lA 145 :DFLKEFDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15312 # 1zbxB.180.47 read from T0287.t2k.many.frag # found chain 1zbxB in template set T0287 180 :DLLMKFDLE 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15313 # 1wzdA.180.177 read from T0287.t2k.many.frag # found chain 1wzdA in template set Warning: unaligning (T0287)D186 (1wzdA)E184 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1wzdA 178 :EKLNNL T0287 187 :LE 1wzdA 185 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15315 # 1wusA.180.111 read from T0287.t2k.many.frag # found chain 1wusA in template set T0287 180 :DLLMKFDLE 1wusA 187 :LALMQKKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15316 # 1yvrA.180.270 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 180 :DLLMKFDLE 1yvrA 271 :SLLQDMPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15317 # 1zi8A.180.85 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 180 :DLLMKFDLE 1zi8A 86 :KLWQAFDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=15318 # 1wkcA.180.11 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 180 :DLLMKFDLE 1wkcA 12 :AAWRRLDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15319 # 1ty9A.180.133 read from T0287.t2k.many.frag # found chain 1ty9A in training set T0287 180 :DLLMKFDLE 1ty9A 134 :DAWLKRPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15320 # 1bm8.180.81 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1bm8 85 :QLAEKF T0287 187 :LE 1bm8 92 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=15322 # 1ifqA.180.49 read from T0287.t2k.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ifqA 39 :QLFRKL T0287 187 :LE 1ifqA 46 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15324 # 1mzgA.180.94 read from T0287.t2k.many.frag # found chain 1mzgA in template set Warning: unaligning (T0287)K184 (1mzgA)N99 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1mzgA 95 :QDIV T0287 185 :FDLE 1mzgA 100 :FDVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15326 # 1b3tA.180.120 read from T0287.t2k.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)D186 (1b3tA)P587 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1b3tA)P589 because C (cis) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1b3tA 581 :DLVMTK T0287 187 :L 1b3tA 588 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=15328 # 1ursA.180.220 read from T0287.t2k.many.frag # found chain 1ursA in training set T0287 180 :DLLMKFDLE 1ursA 221 :DMVSKYHWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15329 # 1j5sA.180.140 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 180 :DL 1j5sA 129 :KK T0287 184 :KFDLE 1j5sA 133 :EMTPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15331 # 2lisA.180.90 read from T0287.t2k.many.frag # found chain 2lisA in training set T0287 180 :DLLMKFDLE 2lisA 91 :EIGRRIDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15332 # 1t77A.180.128 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 180 :DLLMKFDLE 1t77A 2204 :QLFKASNMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15333 # 1vpjA.180.104 read from T0287.t2k.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKFD 1vpjA 93 :KILEKVE T0287 188 :E 1vpjA 101 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=15335 # 1rkxA.180.334 read from T0287.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 180 :DLLM 1rkxA 335 :NWLS T0287 185 :FDLE 1rkxA 340 :TDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=15337 # 1pyaB.180.200 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 180 :DLLMKFDLE 1pyaB 283 :EIMENLTMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15338 # 1yo3A.180.39 read from T0287.t2k.many.frag # found chain 1yo3A in training set T0287 180 :DLLMKFDLE 1yo3A 21 :QALQKYNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15339 # 2gmfA.180.111 read from T0287.t2k.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)D186 (2gmfA)P118 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKF 2gmfA 112 :DFLLVI T0287 187 :LE 2gmfA 119 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15341 # 1n69A.181.62 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1n69A 61 :MMMHM T0287 187 :LEK 1n69A 67 :PKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15343 # 1ucdA.181.107 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 181 :LLMKFDLEK 1ucdA 108 :MRNNYDIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15344 # 1orc.181.9 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 181 :LLMKF 1orc 10 :YAMRF T0287 187 :LEK 1orc 16 :QTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15346 # 1colA.181.84 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LEK 1colA 91 :AQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15348 # 1q7eA.181.316 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 181 :LLMKFDLEK 1q7eA 317 :YTVTIDKHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15349 # 1x38A.181.18 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 181 :LLMKFDLEK 1x38A 19 :LLGRMTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15350 # 2b6cA.181.196 read from T0287.t2k.many.frag # found chain 2b6cA in template set T0287 181 :LLMKFDLEK 2b6cA 194 :LMKELVLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15351 # 1wusA.181.112 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1wusA 188 :ALMQ T0287 186 :DLEK 1wusA 193 :KLSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15353 # 1zi8A.181.86 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 181 :LLMKFDLEK 1zi8A 87 :LWQAFDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15354 # 1uddA.181.119 read from T0287.t2k.many.frag # found chain 1uddA in template set Warning: unaligning (T0287)D186 (1uddA)N125 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1uddA 120 :TAYKG T0287 187 :LEK 1uddA 126 :IIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15356 # 1mzgA.181.95 read from T0287.t2k.many.frag # found chain 1mzgA in template set Warning: unaligning (T0287)K184 (1mzgA)N99 because G (3-10) conformation "forbidden" or filtered. T0287 181 :LLM 1mzgA 96 :DIV T0287 185 :FDLEK 1mzgA 100 :FDVRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=15358 # 1j9lA.181.145 read from T0287.t2k.many.frag # found chain 1j9lA in template set T0287 181 :LLMKFDLEK 1j9lA 146 :FLKEFDFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15359 # 1yvrA.181.271 read from T0287.t2k.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1yvrA 272 :LLQDM T0287 187 :LEK 1yvrA 278 :LTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15361 # 1wkcA.181.12 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 181 :LLMKFDLEK 1wkcA 13 :AWRRLDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15362 # 1pyaB.181.201 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 181 :LLMKFDLEK 1pyaB 284 :IMENLTMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15363 # 2b8nA.181.393 read from T0287.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 2b8nA 382 :YLKN T0287 186 :DLEK 2b8nA 387 :DSYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=15365 # 1zbxB.181.48 read from T0287.t2k.many.frag # found chain 1zbxB in template set T0287 181 :LLMKFDLEK 1zbxB 528 :MIDQMNLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15366 # 1bm8.181.82 read from T0287.t2k.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)F185 (1bm8)F90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1bm8 86 :LAEK T0287 187 :LEK 1bm8 92 :VYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15368 # 1fs1A.181.19 read from T0287.t2k.many.frag # found chain 1fs1A in training set Warning: unaligning (T0287)D186 (1fs1A)C125 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1fs1A 120 :IFSCL T0287 187 :LEK 1fs1A 126 :LPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15370 # 1rz4A.181.107 read from T0287.t2k.many.frag # found chain 1rz4A in template set T0287 181 :LLMKFDLEK 1rz4A 108 :LLETCHFQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15371 # 2d0tA.181.312 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 181 :LLMKFDLEK 2d0tA 310 :LESNPSVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15372 # 1rkxA.181.335 read from T0287.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 1rkxA 336 :WLS T0287 185 :FDLEK 1rkxA 340 :TDMHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15374 # 2c1lA.181.146 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 2c1lA 147 :QSM T0287 185 :FDLEK 2c1lA 151 :FSWND Number of specific fragments extracted= 2 number of extra gaps= 1 total=15376 # 1t77A.181.129 read from T0287.t2k.many.frag # found chain 1t77A in template set T0287 181 :LLMKFDLEK 1t77A 2205 :LFKASNMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15377 # 1r5yA.181.363 read from T0287.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1r5yA 364 :SISE T0287 186 :DLEK 1r5yA 369 :RFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15379 # 1j5sA.181.141 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 181 :L 1j5sA 130 :K T0287 184 :KFDLEK 1j5sA 133 :EMTPQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15381 # 1ty9A.181.134 read from T0287.t2k.many.frag # found chain 1ty9A in training set T0287 181 :LLMKFDLEK 1ty9A 135 :AWLKRPYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15382 # 1wzdA.181.178 read from T0287.t2k.many.frag # found chain 1wzdA in template set T0287 181 :LLMKFDLEK 1wzdA 179 :KLNNLELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15383 # 1vk9A.181.130 read from T0287.t2k.many.frag # found chain 1vk9A in template set Warning: unaligning (T0287)M183 (1vk9A)E121 because G (3-10) conformation "forbidden" or filtered. T0287 181 :LL 1vk9A 119 :VL T0287 184 :KFDLEK 1vk9A 122 :MDDPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15385 # 1yo3A.181.40 read from T0287.t2k.many.frag # found chain 1yo3A in training set T0287 181 :LLMKFDLEK 1yo3A 22 :ALQKYNVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15386 # 1n69A.182.63 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 182 :LMKFDLEKY 1n69A 62 :MMHMQPKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15387 # 1ucdA.182.108 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 182 :LMKFDLEKY 1ucdA 109 :RNNYDIIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15388 # 1orc.182.10 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 182 :LMKF 1orc 11 :AMRF T0287 187 :LEKY 1orc 16 :QTKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=15390 # 1colA.182.85 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 182 :LMK 1colA 86 :WKH T0287 187 :LEKY 1colA 91 :AQDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=15392 # 1q7eA.182.317 read from T0287.t2k.many.frag # found chain 1q7eA in training set Warning: unaligning (T0287)K184 (1q7eA)T320 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LM 1q7eA 318 :TV T0287 185 :FDLEKY 1q7eA 321 :IDKHEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15394 # 1wusA.182.113 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1wusA 189 :LMQ T0287 186 :DLEKY 1wusA 193 :KLSEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=15396 # 1j2rA.182.117 read from T0287.t2k.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K184 (1j2rA)G120 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 1j2rA 118 :FY T0287 185 :FDLEKY 1j2rA 121 :TDLELQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15398 # 2c1lA.182.147 read from T0287.t2k.many.frag # found chain 2c1lA in template set T0287 182 :LMKFDLEKY 2c1lA 148 :SMGFSWNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15399 # 1zi8A.182.87 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 182 :LMKFDLEKY 1zi8A 88 :WQAFDMEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15400 # 1mzgA.182.96 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 182 :LMKFDLEKY 1mzgA 97 :IVNFDVRPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15401 # 1pyaB.182.202 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 182 :LMKFDLEKY 1pyaB 285 :MENLTMPEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15402 # 1x38A.182.19 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 182 :LMKFDLEKY 1x38A 20 :LGRMTLAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15403 # 2b8nA.182.394 read from T0287.t2k.many.frag # found chain 2b8nA in template set T0287 182 :LMKFDLEKY 2b8nA 383 :LKNNDSYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15404 # 1rz4A.182.108 read from T0287.t2k.many.frag # found chain 1rz4A in template set T0287 182 :LMKFDLEKY 1rz4A 109 :LETCHFQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15405 # 2d0tA.182.313 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 182 :LMKFDLEKY 2d0tA 311 :ESNPSVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15406 # 1yvrA.182.272 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 182 :LMKFDLEKY 1yvrA 273 :LQDMPLTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15407 # 1xcrA.182.75 read from T0287.t2k.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 182 :LMKF 1xcrA 75 :KKVY T0287 187 :LEKY 1xcrA 80 :LNKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15409 # 1rkxA.182.336 read from T0287.t2k.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 1rkxA 337 :LS T0287 185 :FDLEKY 1rkxA 340 :TDMHEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=15411 # 1qouA.182.146 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 1qouA 146 :RD T0287 185 :FDLEKY 1qouA 149 :FNTRKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15413 # 1uddA.182.120 read from T0287.t2k.many.frag # found chain 1uddA in template set T0287 182 :LMKFDLEKY 1uddA 121 :AYKGNIIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15414 # 1wkcA.182.13 read from T0287.t2k.many.frag # found chain 1wkcA in training set T0287 182 :LMKFDLEKY 1wkcA 14 :WRRLDLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15415 # 1ujpA.182.236 read from T0287.t2k.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ujpA)S241 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LM 1ujpA 237 :EE T0287 185 :F 1ujpA 240 :R T0287 187 :LEKY 1ujpA 242 :LAPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=15418 # 1j5sA.182.142 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 184 :KFDLEKY 1j5sA 133 :EMTPQKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15419 # 1sa3A.182.127 read from T0287.t2k.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. T0287 182 :L 1sa3A 128 :I T0287 184 :KFDLEKY 1sa3A 130 :EYDVETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15421 # 1r5yA.182.364 read from T0287.t2k.many.frag # found chain 1r5yA in training set T0287 182 :LMKFDLEKY 1r5yA 365 :ISEGRFSQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15422 # 1vk9A.182.131 read from T0287.t2k.many.frag # found chain 1vk9A in template set T0287 182 :LMKFDLEKY 1vk9A 120 :LEMDDPEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15423 # 1fs1A.182.20 read from T0287.t2k.many.frag # found chain 1fs1A in training set T0287 182 :LMKFDLEKY 1fs1A 121 :FSCLCLPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15424 # 1fs7A.182.431 read from T0287.t2k.many.frag # found chain 1fs7A in training set T0287 182 :LMKFDLEKY 1fs7A 454 :LAKVDMEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15425 # 2cwcA.182.178 read from T0287.t2k.many.frag # found chain 2cwcA in template set Warning: unaligning (T0287)M183 (2cwcA)R180 because G (3-10) conformation "forbidden" or filtered. T0287 182 :L 2cwcA 179 :L T0287 184 :KFDLEKY 2cwcA 181 :GAPKEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15427 # 1j1jA.182.87 read from T0287.t2k.many.frag # found chain 1j1jA in template set T0287 182 :LMKFDLEKY 1j1jA 76 :KTKFPAEQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15428 # 1n69A.183.64 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 183 :MKFDLEKYM 1n69A 63 :MHMQPKEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15429 # 1orc.183.11 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 183 :MKF 1orc 12 :MRF T0287 187 :LEKYM 1orc 16 :QTKTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15431 # 1ucdA.183.109 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 183 :MKFDLEKYM 1ucdA 110 :NNYDIIGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15432 # 1qouA.183.147 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1qouA 147 :D T0287 185 :FDLEKYM 1qouA 149 :FNTRKFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=15434 # 1colA.183.86 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 183 :MK 1colA 87 :KH T0287 187 :LEKYM 1colA 91 :AQDMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15436 # 1oz2A.183.223 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 420 :DNFCWEKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15437 # 1j2rA.183.118 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 183 :MKFDLEKYM 1j2rA 119 :YGTDLELQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15438 # 1pyaB.183.203 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 183 :MKFDLEKYM 1pyaB 286 :ENLTMPEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15439 # 2c1lA.183.148 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (2c1lA)S152 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :M 2c1lA 149 :M T0287 185 :F 2c1lA 151 :F T0287 187 :LEKYM 2c1lA 153 :WNDMI Number of specific fragments extracted= 3 number of extra gaps= 2 total=15442 # 1xcrA.183.76 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 183 :MKFDLEKYM 1xcrA 76 :KVYDLNKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15443 # 1q7eA.183.318 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 183 :MKFDLEKYM 1q7eA 319 :VTIDKHEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15444 # 1wusA.183.114 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1wusA 190 :MQ T0287 186 :DLEKYM 1wusA 193 :KLSEYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=15446 # 2b8nA.183.395 read from T0287.t2k.many.frag # found chain 2b8nA in template set T0287 183 :MKFDLEKYM 2b8nA 384 :KNNDSYNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15447 # 2d0tA.183.314 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 183 :MKFDLEKYM 2d0tA 312 :SNPSVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15448 # 1mzgA.183.97 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 183 :MKFDLEKYM 1mzgA 98 :VNFDVRPWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15449 # 1sa3A.183.128 read from T0287.t2k.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. T0287 184 :KFDLEKYM 1sa3A 130 :EYDVETIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=15450 # 1l3lA.183.186 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)K184 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1l3lA 187 :V T0287 185 :FDLEKYM 1l3lA 189 :KTMEEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15452 # 1rz4A.183.109 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1rz4A 110 :ET T0287 186 :DLEKYM 1rz4A 113 :HFQAFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=15454 # 1zi8A.183.88 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 183 :MKFDLEKYM 1zi8A 89 :QAFDMEAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15455 # 1l5aA.183.308 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 183 :MKFDLEKYM 1l5aA 309 :GRYRIEQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15456 # 1x38A.183.20 read from T0287.t2k.many.frag # found chain 1x38A in template set T0287 183 :MKFDLEKYM 1x38A 21 :GRMTLAEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15457 # 1ujpA.183.237 read from T0287.t2k.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ujpA)S241 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :M 1ujpA 238 :E T0287 185 :F 1ujpA 240 :R T0287 187 :LEKYM 1ujpA 242 :LAPLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=15460 # 1uocA.183.224 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 Warning: unaligning (T0287)D186 (1uocA)S228 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1uocA 227 :Y T0287 187 :LEKYM 1uocA 229 :LTTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15462 # 1rkxA.183.337 read from T0287.t2k.many.frag # found chain 1rkxA in template set T0287 183 :MKFDLEKYM 1rkxA 338 :SGTDMHEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15463 # 1r5yA.183.365 read from T0287.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)K184 (1r5yA)E367 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1r5yA 366 :S T0287 186 :DLEKYM 1r5yA 369 :RFSQFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15465 # 1yvrA.183.273 read from T0287.t2k.many.frag # found chain 1yvrA in template set T0287 183 :MKFDLEKYM 1yvrA 274 :QDMPLTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15466 # 1o2dA.183.311 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K184 (1o2dA)G301 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1o2dA 300 :F T0287 185 :FDLEKYM 1o2dA 302 :GSLLKFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15468 # 1oz2A.183.115 read from T0287.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)K184 (1oz2A)E313 because G (3-10) conformation "forbidden" or filtered. T0287 183 :M 1oz2A 312 :E T0287 185 :FDLEKYM 1oz2A 314 :FSWSQYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15470 # 1j5sA.183.143 read from T0287.t2k.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 184 :KFDLEKYM 1j5sA 133 :EMTPQKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15471 # 1vk4A.183.258 read from T0287.t2k.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)K184 (1vk4A)K248 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1vk4A 247 :K T0287 185 :FDLEKYM 1vk4A 249 :MSIEKAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=15473 # 1n69A.184.65 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 184 :KFDLEKYMK 1n69A 64 :HMQPKEICA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15474 # 1qouA.184.148 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)D186 (1qouA)N150 because D (zeta) conformation "forbidden" or filtered. T0287 184 :KF 1qouA 148 :GF T0287 187 :LEKYMK 1qouA 151 :TRKFTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15476 # 1oz2A.184.224 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 421 :NFCWEKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15477 # 1orc.184.12 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 184 :KFDLEKYMK 1orc 13 :RFGQTKTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15478 # 1j2rA.184.119 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 184 :KFDLEKYMK 1j2rA 120 :GTDLELQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15479 # 2c1lA.184.149 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)D186 (2c1lA)S152 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 2c1lA 150 :GF T0287 187 :LEKYMK 2c1lA 153 :WNDMIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15481 # 1pyaB.184.204 read from T0287.t2k.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1pyaB 287 :NL T0287 187 :LEKYMK 1pyaB 290 :MPEWLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15483 # 1xcrA.184.77 read from T0287.t2k.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)K184 (1xcrA)V77 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1xcrA 78 :YDLNKIAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15484 # 1ucdA.184.110 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 184 :KFDLEKYMK 1ucdA 111 :NYDIIGALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15485 # 1o2dA.184.312 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 184 :KFDLEKYMK 1o2dA 301 :GGSLLKFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15486 # 1wusA.184.115 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1wusA 191 :Q T0287 186 :DLEKYMK 1wusA 193 :KLSEYMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15488 # 2d0tA.184.315 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 184 :KFDLEKYMK 2d0tA 313 :NPSVREFVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15489 # 1colA.184.87 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 184 :K 1colA 88 :H T0287 187 :LEKYMK 1colA 91 :AQDMAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=15491 # 1l5aA.184.309 read from T0287.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)D186 (1l5aA)R312 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1l5aA 310 :RY T0287 187 :LEKYMK 1l5aA 313 :IEQIEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15493 # 1l3lA.184.187 read from T0287.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)K184 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1l3lA)T190 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1l3lA 189 :K T0287 187 :LEKYMK 1l3lA 191 :MEEIAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=15495 # 1oz2A.184.116 read from T0287.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)S315 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1oz2A 313 :EF T0287 187 :LEKYMK 1oz2A 316 :WSQYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15497 # 2b8nA.184.396 read from T0287.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 184 :K 2b8nA 385 :N T0287 186 :DLEKYMK 2b8nA 387 :DSYNALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15499 # 1mzgA.184.98 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 184 :KFDLEKYMK 1mzgA 99 :NFDVRPWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15500 # 1f86A.184.62 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 184 :KFDLEKYMK 1f86A 72 :EIDTKSYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15501 # 1ywfA.184.269 read from T0287.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 184 :KF 1ywfA 250 :YG T0287 187 :LEKYMK 1ywfA 253 :LGGYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15503 # 1j54A.184.141 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 184 :KFDLEKYMK 1j54A 142 :RNSLDALCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15504 # 1ujpA.184.238 read from T0287.t2k.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1ujpA 240 :RSLAPLLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15505 # 1sa3A.184.129 read from T0287.t2k.many.frag # found chain 1sa3A in template set T0287 184 :KFDLEKYMK 1sa3A 130 :EYDVETICT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15506 # 1uocA.184.225 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 T0287 185 :FDLEKYMK 1uocA 227 :YSLTTLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15507 # 1r5yA.184.366 read from T0287.t2k.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1r5yA 367 :E T0287 186 :DLEKYMK 1r5yA 369 :RFSQFAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15509 # 1rz4A.184.110 read from T0287.t2k.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1rz4A 111 :T T0287 186 :DLEKYMK 1rz4A 113 :HFQAFWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=15511 # 1mtyG.184.145 read from T0287.t2k.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)D186 (1mtyG)P151 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1mtyG 149 :DT T0287 187 :LEKYMK 1mtyG 152 :LEELRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15513 # 1zi8A.184.89 read from T0287.t2k.many.frag # found chain 1zi8A in template set T0287 184 :KFDLEKYMK 1zi8A 90 :AFDMEAGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15514 # 1j5sA.184.144 read from T0287.t2k.many.frag # found chain 1j5sA in template set T0287 184 :KFDLEKYMK 1j5sA 133 :EMTPQKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15515 # 1q7eA.184.319 read from T0287.t2k.many.frag # found chain 1q7eA in training set T0287 184 :KFDLEKYMK 1q7eA 320 :TIDKHEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15516 # 1oz2A.185.225 read from T0287.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)C423 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :F 1oz2A 422 :F T0287 187 :LEKYMKE 1oz2A 424 :WEKYLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15518 # 1qouA.185.149 read from T0287.t2k.many.frag # found chain 1qouA in template set T0287 185 :FDLEKYMKE 1qouA 149 :FNTRKFTQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15519 # 1pyaB.185.205 read from T0287.t2k.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1pyaB 288 :L T0287 187 :LEKYMKE 1pyaB 290 :MPEWLEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15521 # 1n69A.185.66 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 185 :FDLEKYMKE 1n69A 65 :MQPKEICAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15522 # 1j2rA.185.120 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 185 :FDLEKYMKE 1j2rA 121 :TDLELQLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15523 # 1orc.185.13 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 185 :F 1orc 14 :F T0287 187 :LEKYMKE 1orc 16 :QTKTAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15525 # 2c1lA.185.150 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)D186 (2c1lA)S152 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :F 2c1lA 151 :F T0287 187 :LEKYMKE 2c1lA 153 :WNDMISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15527 # 1ywfA.185.270 read from T0287.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 185 :F 1ywfA 251 :G T0287 187 :LEKYMKE 1ywfA 253 :LGGYLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15529 # 1o2dA.185.313 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1o2dA)S303 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1o2dA 304 :LLKFLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=15530 # 1oz2A.185.117 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 314 :FSWSQYLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15531 # 1l5aA.185.310 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 185 :FDLEKYMKE 1l5aA 311 :YRIEQIEQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15532 # 1xcrA.185.78 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 185 :FDLEKYMKE 1xcrA 78 :YDLNKIAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15533 # 1f86A.185.63 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 185 :FDLEKYMKE 1f86A 73 :IDTKSYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15534 # 1wusA.185.116 read from T0287.t2k.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1wusA 193 :KLSEYMKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15535 # 1j54A.185.142 read from T0287.t2k.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)D186 (1j54A)S144 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1j54A 143 :N T0287 187 :LEKYMKE 1j54A 145 :LDALCAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15537 # 1mtyG.185.146 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 185 :FDLEKYMKE 1mtyG 150 :TPLEELRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15538 # 1uocA.185.226 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 185 :FDLEKYMKE 1uocA 227 :YSLTTLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15539 # 2d0tA.185.316 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 185 :FDLEKYMKE 2d0tA 314 :PSVREFVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15540 # 1ucdA.185.111 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 185 :FDLEKYMKE 1ucdA 112 :YDIIGALRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15541 # 2c71A.185.182 read from T0287.t2k.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)D186 (2c71A)T659 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 2c71A 658 :V T0287 187 :LEKYMKE 2c71A 660 :LTELFTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15543 # 1l3lA.185.188 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 185 :FDLEKYMKE 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15544 # 1wkqA.185.119 read from T0287.t2k.many.frag # found chain 1wkqA in training set T0287 185 :FDLEKYMKE 1wkqA 112 :FDDSFIYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15545 # 1sa3A.185.130 read from T0287.t2k.many.frag # found chain 1sa3A in template set T0287 185 :FDLEKYMKE 1sa3A 131 :YDVETICTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15546 # 1ujpA.185.239 read from T0287.t2k.many.frag # found chain 1ujpA in training set T0287 185 :FDLEKYMKE 1ujpA 240 :RSLAPLLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15547 # 1um0A.185.103 read from T0287.t2k.many.frag # found chain 1um0A in template set T0287 185 :FDLEKYMKE 1um0A 104 :HADFTYFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15548 # 1w5rA.185.5 read from T0287.t2k.many.frag # found chain 1w5rA in template set Warning: unaligning (T0287)F185 because first residue in template chain is (1w5rA)M3 T0287 186 :DLEKYMKE 1w5rA 4 :DLGGYLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15549 # 1rz4A.185.111 read from T0287.t2k.many.frag # found chain 1rz4A in template set T0287 185 :FDLEKYMKE 1rz4A 112 :CHFQAFWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15550 # 1colA.185.88 read from T0287.t2k.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 187 :LEKYMKE 1colA 91 :AQDMANK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15551 # 1mzgA.185.99 read from T0287.t2k.many.frag # found chain 1mzgA in template set T0287 185 :FDLEKYMKE 1mzgA 100 :FDVRPWFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15552 # 1ifc.185.12 read from T0287.t2k.many.frag # found chain 1ifc in training set T0287 185 :FDLEKYMKE 1ifc 12 :ENYEKFMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15553 # 1oz2A.186.226 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 423 :CWEKYLEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=15554 # 1qouA.186.150 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)D186 (1qouA)N150 because D (zeta) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1qouA 151 :TRKFTQEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=15555 # 1pyaB.186.206 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 186 :DLEKYMKEK 1pyaB 289 :TMPEWLEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15556 # 1o2dA.186.314 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)D186 (1o2dA)S303 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1o2dA 304 :LLKFLKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15557 # 1j2rA.186.121 read from T0287.t2k.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K194 (1j2rA)R130 because G (3-10) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1j2rA 122 :DLELQLRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15558 # 1ywfA.186.271 read from T0287.t2k.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ywfA 253 :LGGYLRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15559 # 1orc.186.14 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1orc 16 :QTKTAKDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15560 # 1n69A.186.67 read from T0287.t2k.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1n69A 67 :PKEICALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15561 # 2c1lA.186.151 read from T0287.t2k.many.frag # found chain 2c1lA in template set T0287 186 :DLEKYMKEK 2c1lA 152 :SWNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15562 # 1oz2A.186.118 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 315 :SWSQYLRST Number of specific fragments extracted= 1 number of extra gaps= 0 total=15563 # 1xcrA.186.79 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 186 :DLEKYMKEK 1xcrA 79 :DLNKIAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15564 # 1l5aA.186.311 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 186 :DLEKYMKEK 1l5aA 312 :RIEQIEQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15565 # 1f86A.186.64 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 186 :DLEKYMKEK 1f86A 74 :DTKSYWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15566 # 1j54A.186.143 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 186 :DLEKYMKEK 1j54A 144 :SLDALCARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15567 # 1mtyG.186.147 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 186 :DLEKYMKEK 1mtyG 151 :PLEELRKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15568 # 2d0tA.186.317 read from T0287.t2k.many.frag # found chain 2d0tA in template set T0287 186 :DLEKYMKEK 2d0tA 315 :SVREFVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15569 # 2c71A.186.183 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 186 :DLEKYMKEK 2c71A 659 :TLTELFTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15570 # 1jr2A.186.170 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 186 :DLEKYMKEK 1jr2A 150 :ILPKALKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15571 # 1wusA.186.117 read from T0287.t2k.many.frag # found chain 1wusA in template set T0287 186 :DLEKYMKEK 1wusA 193 :KLSEYMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15572 # 1uocA.186.227 read from T0287.t2k.many.frag # found chain 1uocA in template set T0287 186 :DLEKYMKEK 1uocA 228 :SLTTLADEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15573 # 1jubA.186.287 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 186 :DLEKYMKEK 1jubA 288 :ELEEIMNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15574 # 1vbkA.186.245 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 186 :DLEKYMKEK 1vbkA 246 :RVLKLIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15575 # 1ucdA.186.112 read from T0287.t2k.many.frag # found chain 1ucdA in training set T0287 186 :DLEKYMKEK 1ucdA 113 :DIIGALRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15576 # 1ifc.186.13 read from T0287.t2k.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ifc 14 :YEKFMEKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15577 # 1um0A.186.104 read from T0287.t2k.many.frag # found chain 1um0A in template set T0287 186 :DLEKYMKEK 1um0A 105 :ADFTYFHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15578 # 1mtpA.186.263 read from T0287.t2k.many.frag # found chain 1mtpA in training set Warning: unaligning (T0287)D186 (1mtpA)Q266 because D (zeta) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1mtpA 267 :LVEVLAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=15579 # 1zsqA.186.140 read from T0287.t2k.many.frag # found chain 1zsqA in template set T0287 186 :DLEKYMKEK 1zsqA 210 :DPLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15580 # 1od6A.186.72 read from T0287.t2k.many.frag # found chain 1od6A in training set Warning: unaligning (T0287)D186 (1od6A)L73 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1od6A 74 :LVDFVRRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15581 # 2b8nA.186.398 read from T0287.t2k.many.frag # found chain 2b8nA in template set T0287 186 :DLEKYMKEK 2b8nA 387 :DSYNALKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15582 # 1ko6A.186.157 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 186 :DLEKYMKEK 1ko6A 834 :RLEAVSRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15583 # 1oz2A.187.227 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 424 :WEKYLEETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15584 # 1o2dA.187.315 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 187 :LEKYMKEKG 1o2dA 304 :LLKFLKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15585 # 1ywfA.187.272 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 187 :LEKYMKEKG 1ywfA 253 :LGGYLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15586 # 1qouA.187.151 read from T0287.t2k.many.frag # found chain 1qouA in template set T0287 187 :LEKYMKEKG 1qouA 151 :TRKFTQENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15587 # 1pyaB.187.207 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 187 :LEKYMKEKG 1pyaB 290 :MPEWLEKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15588 # 1j2rA.187.122 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 187 :LEKYMKEKG 1j2rA 123 :LELQLRRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15589 # 1l5aA.187.312 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 187 :LEKYMKEKG 1l5aA 313 :IEQIEQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15590 # 1f86A.187.65 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 187 :LEKYMKEKG 1f86A 75 :TKSYWKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15591 # 1n69A.187.68 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 187 :LEKYMKEKG 1n69A 67 :PKEICALVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15592 # 1orc.187.15 read from T0287.t2k.many.frag # found chain 1orc in training set T0287 187 :LEKYMKEKG 1orc 16 :QTKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15593 # 1j54A.187.144 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 187 :LEKYMKEKG 1j54A 145 :LDALCARYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15594 # 1mtyG.187.148 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 187 :LEKYMKEKG 1mtyG 152 :LEELRKQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15595 # 1oz2A.187.119 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 316 :WSQYLRSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15596 # 2c71A.187.184 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 187 :LEKYMKEKG 2c71A 660 :LTELFTLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15597 # 1jr2A.187.171 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 187 :LEKYMKEKG 1jr2A 151 :LPKALKDKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15598 # 1vbkA.187.246 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 187 :LEKYMKEKG 1vbkA 247 :VLKLIRDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15599 # 1xcrA.187.80 read from T0287.t2k.many.frag # found chain 1xcrA in template set T0287 187 :LEKYMKEKG 1xcrA 80 :LNKIAKEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15600 # 1jubA.187.288 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 187 :LEKYMKEKG 1jubA 289 :LEEIMNQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15601 # 2c1lA.187.152 read from T0287.t2k.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)G195 (2c1lA)L161 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2c1lA 153 :WNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15602 # 1zsqA.187.141 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 T0287 187 :LEKYMKEK 1zsqA 211 :PLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15603 # 1e5kA.187.156 read from T0287.t2k.many.frag # found chain 1e5kA in training set T0287 187 :LEKYMKEKG 1e5kA 157 :VMVFMRLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15604 # 1ux5A.187.359 read from T0287.t2k.many.frag # found chain 1ux5A in template set T0287 187 :LEKYMKEKG 1ux5A 1709 :FESLMHTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15605 # 1i0dA.187.298 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 187 :LEKYMKEKG 1i0dA 332 :VIPFLREKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15606 # 1u4bA.187.514 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 187 :LEKYMKEKG 1u4bA 811 :LNARLKEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=15607 # 1l3lA.187.190 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 187 :LEKYMKEKG 1l3lA 191 :MEEIADVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15608 # 1w6gA.187.115 read from T0287.t2k.many.frag # found chain 1w6gA in template set T0287 187 :LEKYMKEKG 1w6gA 118 :WLKALAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15609 # 1ko6A.187.158 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 187 :LEKYMKEKG 1ko6A 835 :LEAVSRKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15610 # 2bdeA.187.283 read from T0287.t2k.many.frag # found chain 2bdeA in template set T0287 187 :LEKYMKEKG 2bdeA 284 :AKKFTEDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15611 # 1t0fC.187.32 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 187 :LEKYMKEKG 1t0fC 534 :MHERLKGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15612 # 1uocA.187.228 read from T0287.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K194 (1uocA)L236 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1uocA 229 :LTTLADE T0287 195 :G 1uocA 237 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=15614 # 1oz2A.188.228 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 425 :EKYLEETGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15615 # 1j2rA.188.123 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 188 :EKYMKEKGV 1j2rA 124 :ELQLRRRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15616 # 1o2dA.188.316 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K194 (1o2dA)L311 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1o2dA 305 :LKFLKE T0287 195 :GV 1o2dA 312 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15618 # 1qouA.188.152 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K194 (1qouA)N158 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1qouA 152 :RKFTQE T0287 195 :GV 1qouA 159 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15620 # 1ywfA.188.273 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 188 :EKYMKEKGV 1ywfA 254 :GGYLRDAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15621 # 1pyaB.188.208 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 188 :EKYMKEKGV 1pyaB 291 :PEWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15622 # 1l5aA.188.313 read from T0287.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)K194 (1l5aA)Q320 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1l5aA 314 :EQIEQD T0287 195 :GV 1l5aA 321 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15624 # 1i0dA.188.299 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 188 :EKYMKEKGV 1i0dA 333 :IPFLREKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15625 # 1mtyG.188.149 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 188 :EKYMKEKGV 1mtyG 153 :EELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15626 # 1n69A.188.69 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 188 :EKYMKEKGV 1n69A 68 :KEICALVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15627 # 1jr2A.188.172 read from T0287.t2k.many.frag # found chain 1jr2A in template set T0287 188 :EKYMKEKGV 1jr2A 152 :PKALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15628 # 1jubA.188.289 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 188 :EKYMKEKGV 1jubA 290 :EEIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15629 # 1j54A.188.145 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 188 :EKYMKEKGV 1j54A 146 :DALCARYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15630 # 1f86A.188.66 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 188 :EKYMKEKGV 1f86A 76 :KSYWKALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15631 # 2nacA.188.167 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 188 :EKYMKEKGV 2nacA 168 :SHEWARKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15632 # 1ko6A.188.159 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 188 :EKYMKEKGV 1ko6A 836 :EAVSRKQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15633 # 1t0fC.188.33 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 188 :EKYMKEKGV 1t0fC 535 :HERLKGKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15634 # 2c71A.188.185 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 188 :EKYMKEKGV 2c71A 661 :TELFTLKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15635 # 1orc.188.16 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 T0287 188 :EKYMKEKG 1orc 17 :TKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15636 # 1u4bA.188.515 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 188 :EKYMKEKGV 1u4bA 812 :NARLKEERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15637 # 1vbkA.188.247 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 188 :EKYMKEKGV 1vbkA 248 :LKLIRDFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15638 # 1zsqA.188.142 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 T0287 188 :EKYMKEK 1zsqA 212 :LLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15639 # 1e5kA.188.157 read from T0287.t2k.many.frag # found chain 1e5kA in training set T0287 188 :EKYMKEKGV 1e5kA 158 :MVFMRLAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15640 # 1lxjA.188.63 read from T0287.t2k.many.frag # found chain 1lxjA in training set T0287 188 :EKYMKEKGV 1lxjA 64 :HEYGHEKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15641 # 1nuuA.188.223 read from T0287.t2k.many.frag # found chain 1nuuA in template set T0287 188 :EKYMKEKGV 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15642 # 1oz2A.188.120 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 317 :SQYLRSTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15643 # 1l1sA.188.72 read from T0287.t2k.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)K194 (1l1sA)S79 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1l1sA 73 :SNTLRA T0287 195 :GV 1l1sA 80 :GM Number of specific fragments extracted= 2 number of extra gaps= 1 total=15645 # 1l3lA.188.191 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 188 :EKYMKEKGV 1l3lA 192 :EEIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15646 # 2d1pB.188.79 read from T0287.t2k.many.frag # found chain 2d1pB in template set T0287 188 :EKYMKEKGV 2d1pB 80 :AASLRERGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15647 # 1ux5A.188.360 read from T0287.t2k.many.frag # found chain 1ux5A in template set Warning: unaligning (T0287)K194 (1ux5A)Y1716 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1ux5A 1710 :ESLMHT T0287 195 :GV 1ux5A 1717 :GE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15649 # 1j2rA.189.124 read from T0287.t2k.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K194 (1j2rA)R130 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1j2rA 125 :LQLRR T0287 195 :GVQ 1j2rA 131 :GID Number of specific fragments extracted= 2 number of extra gaps= 1 total=15651 # 1oz2A.189.229 read from T0287.t2k.many.frag # found chain 1oz2A in training set T0287 189 :KYMKEKGVQ 1oz2A 426 :KYLEETGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15652 # 1o2dA.189.317 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 189 :KYMKEKGVQ 1o2dA 306 :KFLKELGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15653 # 1ywfA.189.274 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 189 :KYMKEKGVQ 1ywfA 255 :GYLRDAGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15654 # 1pyaB.189.209 read from T0287.t2k.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)Q197 (1pyaB)K300 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1pyaB 292 :EWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=15655 # 1i0dA.189.300 read from T0287.t2k.many.frag # found chain 1i0dA in training set Warning: unaligning (T0287)Q197 (1i0dA)P342 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1i0dA 334 :PFLREKGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15656 # 1qouA.189.153 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)Q197 (1qouA)G161 because S (epsilon) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1qouA 153 :KFTQENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15657 # 1l5aA.189.314 read from T0287.t2k.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)Q197 (1l5aA)N323 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l5aA 315 :QIEQDQGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15658 # 1mtyG.189.150 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 189 :KYMKEKGVQ 1mtyG 154 :ELRKQRGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15659 # 1u4bA.189.516 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 189 :KYMKEKGVQ 1u4bA 813 :ARLKEERLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15660 # 1t0fC.189.34 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 189 :KYMKEKGVQ 1t0fC 536 :ERLKGKGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15661 # 2nacA.189.168 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 189 :KYMKEKGVQ 2nacA 169 :HEWARKGGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15662 # 1f86A.189.67 read from T0287.t2k.many.frag # found chain 1f86A in training set Warning: unaligning (T0287)K194 (1f86A)L82 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1f86A 77 :SYWKA T0287 195 :GVQ 1f86A 83 :GIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15664 # 1jubA.189.290 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 189 :KYMKEKGVQ 1jubA 291 :EIMNQKGYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15665 # 1zsqA.189.143 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 189 :KYMKEK 1zsqA 213 :LEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15666 # 1jr2A.189.173 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)Q197 (1jr2A)A161 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1jr2A 153 :KALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15667 # 1j54A.189.146 read from T0287.t2k.many.frag # found chain 1j54A in training set T0287 189 :KYMKEKGVQ 1j54A 147 :ALCARYEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=15668 # 2c71A.189.186 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 189 :KYMKEKGVQ 2c71A 662 :ELFTLKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15669 # 1l1sA.189.73 read from T0287.t2k.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l1sA 74 :NTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15670 # 1ko6A.189.160 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 189 :KYMKEKGVQ 1ko6A 837 :AVSRKQGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15671 # 1vbkA.189.248 read from T0287.t2k.many.frag # found chain 1vbkA in template set T0287 189 :KYMKEKGVQ 1vbkA 249 :KLIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15672 # 1n69A.189.70 read from T0287.t2k.many.frag # found chain 1n69A in template set T0287 189 :KYMKEKGVQ 1n69A 69 :EICALVGFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15673 # 1orc.189.17 read from T0287.t2k.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1orc)Y26 T0287 189 :KYMKEKG 1orc 18 :KTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15674 # 1ux5A.189.361 read from T0287.t2k.many.frag # found chain 1ux5A in template set T0287 189 :KYMKEKGVQ 1ux5A 1711 :SLMHTYGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=15675 # 1nuuA.189.224 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1nuuA 225 :TYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15676 # 2d1pB.189.80 read from T0287.t2k.many.frag # found chain 2d1pB in template set T0287 189 :KYMKEKGVQ 2d1pB 81 :ASLRERGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15677 # 1e5kA.189.158 read from T0287.t2k.many.frag # found chain 1e5kA in training set T0287 189 :KYMKEKGVQ 1e5kA 159 :VFMRLAGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15678 # 1l3lA.189.192 read from T0287.t2k.many.frag # found chain 1l3lA in training set T0287 189 :KYMKEKGVQ 1l3lA 193 :EIADVEGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15679 # 1c1yB.189.29 read from T0287.t2k.many.frag # found chain 1c1yB in template set T0287 189 :KYMKEKGVQ 1c1yB 84 :KALKVRGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15680 # 2cvbA.189.88 read from T0287.t2k.many.frag # found chain 2cvbA in template set T0287 189 :KYMKEKGVQ 2cvbA 89 :AFAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15681 # 1j2rA.190.125 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 190 :YMKEKGVQN 1j2rA 126 :QLRRRGIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15682 # 1oz2A.190.230 read from T0287.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)N198 (1oz2A)A435 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1oz2A 427 :YLEETGAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=15683 # 1jubA.190.291 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 190 :YMKEKGVQN 1jubA 292 :IMNQKGYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15684 # 1ywfA.190.275 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 190 :YMKEKGVQN 1ywfA 256 :YLRDAGISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15685 # 1i0dA.190.301 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 190 :YMKEKGVQN 1i0dA 335 :FLREKGVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15686 # 1mtyG.190.151 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 190 :YMKEKGVQN 1mtyG 155 :LRKQRGVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15687 # 1o2dA.190.318 read from T0287.t2k.many.frag # found chain 1o2dA in training set T0287 190 :YMKEKGVQN 1o2dA 307 :FLKELGLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15688 # 1pyaB.190.210 read from T0287.t2k.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)Q197 (1pyaB)K300 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1pyaB 293 :WLEKMGY T0287 198 :N 1pyaB 301 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=15690 # 1vbkA.190.249 read from T0287.t2k.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1vbkA 250 :LIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15691 # 1t0fC.190.35 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 190 :YMKEKGVQN 1t0fC 537 :RLKGKGVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15692 # 2nacA.190.169 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 190 :YMKEKGVQN 2nacA 170 :EWARKGGWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15693 # 1onrA.190.116 read from T0287.t2k.many.frag # found chain 1onrA in template set T0287 190 :YMKEKGVQN 1onrA 118 :LYNDAGISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15694 # 1l1sA.190.74 read from T0287.t2k.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1l1sA 75 :TLRASGM T0287 198 :N 1l1sA 83 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=15696 # 1zsqA.190.144 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 Warning: unaligning (T0287)N198 (1zsqA)N222 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEK 1zsqA 214 :EYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15697 # 1qouA.190.154 read from T0287.t2k.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)N198 (1qouA)L162 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1qouA 154 :FTQENELG Number of specific fragments extracted= 1 number of extra gaps= 1 total=15698 # 1ko6A.190.161 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 190 :YMKEKGVQN 1ko6A 838 :VSRKQGAQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15699 # 1l5aA.190.315 read from T0287.t2k.many.frag # found chain 1l5aA in template set T0287 190 :YMKEKGVQN 1l5aA 316 :IEQDQGLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15700 # 1u4bA.190.517 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 190 :YMKEKGVQN 1u4bA 814 :RLKEERLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15701 # 2c71A.190.187 read from T0287.t2k.many.frag # found chain 2c71A in template set T0287 190 :YMKEKGVQN 2c71A 663 :LFTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15702 # 1lxjA.190.65 read from T0287.t2k.many.frag # found chain 1lxjA in training set T0287 190 :YMKEKGVQN 1lxjA 66 :YGHEKGYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15703 # 2cvbA.190.89 read from T0287.t2k.many.frag # found chain 2cvbA in template set T0287 190 :YMKEKGVQN 2cvbA 90 :FAEEHGIFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15704 # 1i12A.190.142 read from T0287.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0287)K194 (1i12A)C146 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKE 1i12A 142 :FYEK T0287 195 :GVQN 1i12A 147 :GFSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=15706 # 1c1yB.190.30 read from T0287.t2k.many.frag # found chain 1c1yB in template set T0287 190 :YMKEKGVQN 1c1yB 85 :ALKVRGLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15707 # 1j54A.190.147 read from T0287.t2k.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)N198 (1j54A)N156 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1j54A 148 :LCARYEID Number of specific fragments extracted= 1 number of extra gaps= 1 total=15708 # 1n93X.190.364 read from T0287.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)K194 (1n93X)I364 because G (3-10) conformation "forbidden" or filtered. T0287 190 :YMKE 1n93X 360 :IMKM T0287 195 :GVQN 1n93X 365 :GVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=15710 # 1ux5A.190.362 read from T0287.t2k.many.frag # found chain 1ux5A in template set T0287 190 :YMKEKGVQN 1ux5A 1712 :LMHTYGEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15711 # 1nuuA.190.225 read from T0287.t2k.many.frag # found chain 1nuuA in template set T0287 190 :YMKEKGVQN 1nuuA 226 :YIKDHGLYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15712 # 1y42X.190.148 read from T0287.t2k.many.frag # found chain 1y42X in template set T0287 190 :YMKEKGVQN 1y42X 180 :QMRARGYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15713 # 2d1pB.190.81 read from T0287.t2k.many.frag # found chain 2d1pB in template set T0287 190 :YMKEKGVQN 2d1pB 82 :SLRERGLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15714 # 1f86A.190.68 read from T0287.t2k.many.frag # found chain 1f86A in training set T0287 190 :YMKEKGVQN 1f86A 78 :YWKALGISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15715 # 1mtyG.191.152 read from T0287.t2k.many.frag # found chain 1mtyG in training set T0287 191 :MKEKGVQNA 1mtyG 156 :RKQRGVRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15716 # 1t0fC.191.36 read from T0287.t2k.many.frag # found chain 1t0fC in template set T0287 191 :MKEKGVQNA 1t0fC 538 :LKGKGVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15717 # 1jubA.191.292 read from T0287.t2k.many.frag # found chain 1jubA in training set T0287 191 :MKEKGVQNA 1jubA 293 :MNQKGYQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15718 # 1j2rA.191.126 read from T0287.t2k.many.frag # found chain 1j2rA in training set T0287 191 :MKEKGVQNA 1j2rA 127 :LRRRGIDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15719 # 1vbkA.191.250 read from T0287.t2k.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1vbkA 251 :IRDFGVK T0287 199 :A 1vbkA 259 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15721 # 1onrA.191.117 read from T0287.t2k.many.frag # found chain 1onrA in template set T0287 191 :MKEKGVQNA 1onrA 119 :YNDAGISND Number of specific fragments extracted= 1 number of extra gaps= 0 total=15722 # 1oz2A.191.231 read from T0287.t2k.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)N198 (1oz2A)A435 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1oz2A 428 :LEETGAS T0287 199 :A 1oz2A 436 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15724 # 1i0dA.191.302 read from T0287.t2k.many.frag # found chain 1i0dA in training set T0287 191 :MKEKGVQNA 1i0dA 336 :LREKGVPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15725 # 1ko6A.191.162 read from T0287.t2k.many.frag # found chain 1ko6A in template set T0287 191 :MKEKGVQNA 1ko6A 839 :SRKQGAQFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15726 # 1sp3A.191.375 read from T0287.t2k.many.frag # found chain 1sp3A in template set Warning: unaligning (T0287)Q197 (1sp3A)K382 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1sp3A 376 :MLEKGI T0287 198 :NA 1sp3A 383 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15728 # 1zsqA.191.145 read from T0287.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K194 (1zsqA)Q218 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 Warning: unaligning (T0287)N198 (1zsqA)N222 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKE 1zsqA 215 :YRR T0287 199 :A 1zsqA 223 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=15730 # 1l1sA.191.75 read from T0287.t2k.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1l1sA 76 :LRASGM T0287 198 :NA 1l1sA 83 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=15732 # 2cvbA.191.90 read from T0287.t2k.many.frag # found chain 2cvbA in template set T0287 191 :MKEKGVQNA 2cvbA 91 :AEEHGIFFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15733 # 2nacA.191.170 read from T0287.t2k.many.frag # found chain 2nacA in training set T0287 191 :MKEKGVQNA 2nacA 171 :WARKGGWNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15734 # 1n93X.191.365 read from T0287.t2k.many.frag # found chain 1n93X in training set T0287 191 :MKEKGVQNA 1n93X 361 :MKMIGVTGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15735 # 1c1yB.191.31 read from T0287.t2k.many.frag # found chain 1c1yB in template set T0287 191 :MKEKGVQNA 1c1yB 86 :LKVRGLQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15736 # 1o2dA.191.319 read from T0287.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)Q197 (1o2dA)Y314 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A199 (1o2dA)K316 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1o2dA 308 :LKELGL T0287 198 :N 1o2dA 315 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=15738 # 1i12A.191.143 read from T0287.t2k.many.frag # found chain 1i12A in training set T0287 191 :MKEKGVQNA 1i12A 143 :YEKCGFSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15739 # 1ywfA.191.276 read from T0287.t2k.many.frag # found chain 1ywfA in template set T0287 191 :MKEKGVQNA 1ywfA 257 :LRDAGISQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15740 # 1lxjA.191.66 read from T0287.t2k.many.frag # found chain 1lxjA in training set T0287 191 :MKEKGVQNA 1lxjA 67 :GHEKGYVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15741 # 1u4bA.191.518 read from T0287.t2k.many.frag # found chain 1u4bA in training set T0287 191 :MKEKGVQNA 1u4bA 815 :LKEERLQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15742 # 1pyaB.191.211 read from T0287.t2k.many.frag # found chain 1pyaB in template set T0287 191 :MKEKGVQNA 1pyaB 294 :LEKMGYKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15743 # 1jr2A.191.175 read from T0287.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)A199 (1jr2A)E163 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 1jr2A 155 :LKDKGIAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15744 # 1s3rA.191.283 read from T0287.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)Q197 (1s3rA)N287 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1s3rA 281 :LINRGV T0287 198 :NA 1s3rA 288 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15746 # 2c71A.191.188 read from T0287.t2k.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)A199 (2c71A)D672 because D (zeta) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 2c71A 664 :FTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15747 # 1y42X.191.149 read from T0287.t2k.many.frag # found chain 1y42X in template set T0287 191 :MKEKGVQNA 1y42X 181 :MRARGYEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15748 # 1nofA.191.119 read from T0287.t2k.many.frag # found chain 1nofA in training set T0287 191 :MKEKGVQNA 1nofA 150 :MQTNGAPLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15749 # 1qddA.191.65 read from T0287.t2k.many.frag # found chain 1qddA in training set T0287 191 :MKEKGVQNA 1qddA 66 :IKESGTDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15750 # 2igd.191.38 read from T0287.t2k.many.frag # found chain 2igd in training set T0287 191 :MKEKGVQNA 2igd 39 :ANDNGVDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15751 # 1nuuA.191.226 read from T0287.t2k.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N198 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1nuuA 227 :IKDHGL T0287 199 :A 1nuuA 235 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=15753 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0287.t04.many.frag with CODEWEIGHT bystroff filtering # T0287 read from T0287.t04.many.frag # 1e9rA.1.164 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 1 :MSNNMRKLF 1e9rA 235 :GTPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15754 # 1wu7A.1.175 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)M1 (1wu7A)T176 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N3 (1wu7A)S178 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :S 1wu7A 177 :S T0287 4 :NMRKLF 1wu7A 179 :DPFSVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=15756 # 1xsvA.1.25 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 1 :MSNNMRKLF 1xsvA 23 :LTNKQRNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15757 # 1zpyA.1.12 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 1 :MSN 1zpyA 13 :LSD T0287 6 :RKLF 1zpyA 18 :RDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=15759 # 1efyA.1.3 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 1 :MSNNMRKLF 1efyA 665 :LAKPIQDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15760 # 1u61A.1.37 read from T0287.t04.many.frag # found chain 1u61A in template set T0287 1 :MSNNMRKLF 1u61A 35 :RPNQLHRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15761 # 2b06A.1.120 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 1 :MSNNMRKLF 2b06A 121 :LAYDMLPLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15762 # 2czsA.1.12 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 1 :MSNNMRKLF 2czsA 35 :LDTNHKRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15763 # 1z7xW.1.211 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 1 :MSNNMRKLF 1z7xW 211 :TSDNCRDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15764 # 1v96A.1.17 read from T0287.t04.many.frag # found chain 1v96A in template set T0287 1 :MSNNMRKLF 1v96A 18 :HSQNMKRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15765 # 1p0yA.1.306 read from T0287.t04.many.frag # found chain 1p0yA in template set T0287 1 :MSNNMRKLF 1p0yA 351 :LPPGLLPYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15766 # 1qg8A.1.11 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 1 :MSNNMRKLF 1qg8A 13 :KSDYVAKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15767 # 1j93A.1.165 read from T0287.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N4 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 1 :MSN 1j93A 165 :SSK T0287 6 :RKLF 1j93A 170 :TKIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15769 # 2f22A.1.32 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 1 :MSNNMRKLF 2f22A 32 :ELGTLRKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15770 # 1yvrA.1.143 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 1 :MSNNMRKLF 1yvrA 144 :WGRALRKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15771 # 1ah7.1.190 read from T0287.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1ah7 191 :V T0287 3 :NNMRKLF 1ah7 193 :DNTKDWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=15773 # 1x91A.1.29 read from T0287.t04.many.frag # found chain 1x91A in training set Warning: unaligning (T0287)N4 (1x91A)N29 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :MSN 1x91A 26 :ASA T0287 5 :MRKLF 1x91A 30 :LQALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15775 # 2b0tA.1.59 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 1 :MSNNMRKLF 2b0tA 60 :VGNALAELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15776 # 1pu6A.1.60 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :M 1pu6A 61 :L T0287 3 :NNMRKLF 1pu6A 63 :NDDEINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15778 # 1ua4A.1.237 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 1 :MSNNMRKLF 1ua4A 238 :TKENYKEPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15779 # 1yd0A.1.0 read from T0287.t04.many.frag # found chain 1yd0A in training set T0287 1 :MSNNMRKLF 1yd0A 1 :MKEKIRKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15780 # 1qhlA.1.166 read from T0287.t04.many.frag # found chain 1qhlA in template set T0287 1 :MSNNMRKLF 1qhlA 167 :QFNSITDYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15781 # 1jfzA.1.0 read from T0287.t04.many.frag # found chain 1jfzA in template set Warning: unaligning (T0287)S2 (1jfzA)M1 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N4 (1jfzA)M3 because G (3-10) conformation "forbidden" or filtered. T0287 1 :M 1jfzA 0 :G T0287 3 :N 1jfzA 2 :K T0287 5 :MRKLF 1jfzA 4 :LEQLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=15784 # 1ldjA.1.298 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 T0287 1 :MSNNMRKL 1ldjA 315 :KNEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15785 # 2bg5A.1.276 read from T0287.t04.many.frag # found chain 2bg5A in template set T0287 1 :MSNNMRKLF 2bg5A 526 :SATSIPEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15786 # 1utcA.1.329 read from T0287.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0287)N4 (1utcA)N333 because G (3-10) conformation "forbidden" or filtered. T0287 1 :MSN 1utcA 330 :EEE T0287 5 :MRKLF 1utcA 334 :IIPYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15788 # 1qgiA.1.181 read from T0287.t04.many.frag # found chain 1qgiA in training set T0287 1 :MSNNMRKLF 1qgiA 182 :GSDTLQGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15789 # 1fm0D.1.23 read from T0287.t04.many.frag # found chain 1fm0D in training set T0287 1 :MSNNMRKLF 1fm0D 24 :DFPTVEALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15790 # 2b6cA.1.120 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)L119 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLF 2b6cA 120 :TELPTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15791 # 1m5wA.1.111 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 1 :MSNNMRKLF 1m5wA 112 :QRDKMRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15792 # 1wu7A.2.176 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)N3 (1wu7A)S178 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :S 1wu7A 177 :S T0287 4 :NMRKLFS 1wu7A 179 :DPFSVFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15794 # 1xsvA.2.26 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 2 :SNNMRKLFS 1xsvA 24 :TNKQRNYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15795 # 1efyA.2.4 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 2 :SNNMRKLFS 1efyA 666 :AKPIQDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15796 # 1e9rA.2.165 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 2 :SNNMRKLFS 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15797 # 2czsA.2.13 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 2 :SNNMRKLFS 2czsA 36 :DTNHKRFYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15798 # 1zpyA.2.13 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 2 :SN 1zpyA 14 :SD T0287 6 :RKLFS 1zpyA 18 :RDMHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15800 # 1ah7.2.191 read from T0287.t04.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1ah7 193 :DNTKDWFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15801 # 2f22A.2.33 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 2 :SNNMRKLFS 2f22A 33 :LGTLRKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15802 # 1qg8A.2.12 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 2 :SNNMRKLFS 1qg8A 14 :SDYVAKSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15803 # 2b06A.2.121 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 2 :SNNMRKLFS 2b06A 122 :AYDMLPLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=15804 # 1j93A.2.166 read from T0287.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 2 :SNN 1j93A 166 :SKN T0287 6 :RKLFS 1j93A 170 :TKIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15806 # 1z7xW.2.212 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 2 :SNNMRKLFS 1z7xW 212 :SDNCRDLCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15807 # 1ldjA.2.299 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 2 :SNNMRKL 1ldjA 316 :NEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=15808 # 1yvrA.2.144 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 2 :SNNMRKLFS 1yvrA 145 :GRALRKAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15809 # 1ua4A.2.238 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 2 :SNNMRKLFS 1ua4A 239 :KENYKEPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15810 # 1m5wA.2.112 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 2 :SNNMRKLFS 1m5wA 113 :RDKMRDACK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15811 # 1wb9A.2.429 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 2 :SNNMRKLFS 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15812 # 1u61A.2.38 read from T0287.t04.many.frag # found chain 1u61A in template set T0287 2 :SNNMRKLFS 1u61A 36 :PNQLHRLGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15813 # 1dozA.2.17 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 2 :SNNMRKLFS 1dozA 19 :EEDIERYYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15814 # 2b6cA.2.121 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 Warning: unaligning (T0287)N4 (2b6cA)E121 because G (3-10) conformation "forbidden" or filtered. T0287 3 :N 2b6cA 120 :T T0287 5 :MRKLFS 2b6cA 122 :LPTIFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=15816 # 1v96A.2.18 read from T0287.t04.many.frag # found chain 1v96A in template set T0287 2 :SNNMRKLFS 1v96A 19 :SQNMKRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15817 # 1yd0A.2.1 read from T0287.t04.many.frag # found chain 1yd0A in training set T0287 2 :SNNMRKLFS 1yd0A 2 :KEKIRKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15818 # 1xfiA.2.38 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 2 :SNNMRKLFS 1xfiA 39 :TPNEISWIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15819 # 1pu6A.2.61 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N3 (1pu6A)N63 because G (3-10) conformation "forbidden" or filtered. T0287 4 :NMRKLFS 1pu6A 64 :DDEINLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=15820 # 3thiA.2.120 read from T0287.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N3 (3thiA)D130 because G (3-10) conformation "forbidden" or filtered. T0287 2 :S 3thiA 129 :V T0287 4 :NMRKLFS 3thiA 131 :NIYELYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=15822 # 1p0yA.2.307 read from T0287.t04.many.frag # found chain 1p0yA in template set Warning: unaligning (T0287)N4 (1p0yA)G354 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :SN 1p0yA 352 :PP T0287 5 :MRKLFS 1p0yA 355 :LLPYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15824 # 1z0wA.2.174 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 1z0wA 589 :VS T0287 5 :MRKLFS 1z0wA 592 :INEVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=15826 # 2ahrA.2.154 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N4 (2ahrA)D154 because G (3-10) conformation "forbidden" or filtered. T0287 2 :SN 2ahrA 152 :EK T0287 5 :MRKLFS 2ahrA 155 :FDTFTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15828 # 1hw1A.2.120 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 2 :SNNMRKLFS 1hw1A 121 :PDKAQEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15829 # 2b0tA.2.60 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 2 :SNNMRKLFS 2b0tA 61 :GNALAELGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15830 # 1wu7A.3.177 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 3 :NNMRKLFSM 1wu7A 178 :SDPFSVFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15831 # 1efyA.3.5 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 3 :NNMRKLFSM 1efyA 667 :KPIQDLIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15832 # 1xsvA.3.27 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 3 :NNMRKLFSM 1xsvA 25 :NKQRNYLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15833 # 1zpyA.3.14 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 3 :N 1zpyA 15 :D T0287 6 :RKLFSM 1zpyA 18 :RDMHRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=15835 # 1ah7.3.192 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 3 :NNMRKLFSM 1ah7 193 :DNTKDWFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15836 # 2czsA.3.14 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 3 :NNMRKLFSM 2czsA 37 :TNHKRFYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15837 # 1e9rA.3.166 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 3 :NNMRKLFSM 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15838 # 2f22A.3.34 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 3 :NNMRKLFSM 2f22A 34 :GTLRKLFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15839 # 2b6cA.3.122 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 3 :NNMRKLFSM 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15840 # 1m5wA.3.113 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 3 :NNMRKLFSM 1m5wA 114 :DKMRDACKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15841 # 1ldjA.3.300 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 3 :NNMRKL 1ldjA 317 :EDLGRM T0287 11 :M 1ldjA 325 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=15843 # 1dozA.3.18 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 3 :NNMRKLFSM 1dozA 20 :EDIERYYTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15844 # 2b06A.3.122 read from T0287.t04.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 3 :N 2b06A 123 :Y T0287 5 :MRKLFSM 2b06A 125 :MLPLMEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=15846 # 1wb9A.3.430 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 3 :NNMRKLFSM 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15847 # 1z7xW.3.213 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 3 :NNMRKLFSM 1z7xW 213 :DNCRDLCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15848 # 1j93A.3.167 read from T0287.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N4 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 3 :N 1j93A 167 :K T0287 6 :RKLFSM 1j93A 170 :TKIKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=15850 # 1qg8A.3.13 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 3 :NNMRKLFSM 1qg8A 15 :DYVAKSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15851 # 3thiA.3.121 read from T0287.t04.many.frag # found chain 3thiA in template set T0287 3 :NNMRKLFSM 3thiA 130 :DNIYELYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15852 # 1ee4A.3.296 read from T0287.t04.many.frag # found chain 1ee4A in template set Warning: unaligning (T0287)N3 (1ee4A)N383 because L (left) conformation "forbidden" or filtered. T0287 4 :NMRKLFSM 1ee4A 384 :LIPPLVKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15853 # 1yvrA.3.145 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 3 :NNMRKLFSM 1yvrA 146 :RALRKAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15854 # 1ua4A.3.239 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 3 :NNMRKLFSM 1ua4A 240 :ENYKEPFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15855 # 1xfiA.3.39 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 3 :NNMRKLFSM 1xfiA 40 :PNEISWINV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15856 # 1b25A.3.502 read from T0287.t04.many.frag # found chain 1b25A in template set T0287 3 :NNMRKLFSM 1b25A 503 :DYYPKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15857 # 1u61A.3.39 read from T0287.t04.many.frag # found chain 1u61A in template set T0287 3 :NNMRKLFSM 1u61A 37 :NQLHRLGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15858 # 1z0wA.3.175 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 1z0wA 590 :S T0287 5 :MRKLFSM 1z0wA 592 :INEVLEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=15860 # 1hw1A.3.121 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 3 :NNMRKLFSM 1hw1A 122 :DKAQEVLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15861 # 2ahrA.3.155 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 3 :NNMRKLFSM 2ahrA 153 :KDFDTFTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15862 # 2b0tA.3.61 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 3 :NNMRKLFSM 2b0tA 62 :NALAELGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15863 # 1yqyA.3.29 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 3 :NNMRKLFSM 1yqyA 287 :EEGRGLLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15864 # 1yavA.3.102 read from T0287.t04.many.frag # found chain 1yavA in template set T0287 3 :NNMRKLFSM 1yavA 103 :DPIMKGFGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15865 # 1wu7A.4.178 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 4 :NMRKLFSMI 1wu7A 179 :DPFSVFSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=15866 # 1ah7.4.193 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 4 :NMRKLFSMI 1ah7 194 :NTKDWFVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15867 # 1efyA.4.6 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 4 :NMRKLFSMI 1efyA 668 :PIQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15868 # 1xsvA.4.28 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 4 :NMRKLFSMI 1xsvA 26 :KQRNYLELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15869 # 1zpyA.4.15 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMI 1zpyA 18 :RDMHRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15870 # 2czsA.4.15 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 4 :NMRKLFSMI 2czsA 38 :NHKRFYDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15871 # 1m5wA.4.114 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 4 :NMRKLFSMI 1m5wA 115 :KMRDACKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15872 # 1e9rA.4.167 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 4 :NMRKLFSMI 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15873 # 1ldjA.4.301 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 4 :NMRKL 1ldjA 318 :DLGRM T0287 11 :MI 1ldjA 325 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=15875 # 2b6cA.4.123 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 4 :NMRKLFSMI 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15876 # 1dozA.4.19 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 4 :NMRKLFSMI 1dozA 21 :DIERYYTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15877 # 2f22A.4.35 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 4 :NMRKLFSMI 2f22A 35 :TLRKLFIHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15878 # 2b06A.4.123 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 4 :NMRKLFSMI 2b06A 124 :DMLPLMEMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15879 # 1yvrA.4.146 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 4 :NMRKLFSMI 1yvrA 147 :ALRKAVSDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15880 # 1xfiA.4.40 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 4 :NMRKLFSMI 1xfiA 41 :NEISWINVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15881 # 1wb9A.4.431 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 4 :NMRKLFSMI 1wb9A 432 :ELDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15882 # 1qg8A.4.14 read from T0287.t04.many.frag # found chain 1qg8A in training set T0287 4 :NMRKLFSMI 1qg8A 16 :YVAKSISSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15883 # 1z0wA.4.176 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1z0wA 592 :INEVLEHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=15884 # 3thiA.4.122 read from T0287.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N4 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 3thiA 132 :IYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15885 # 1yavA.4.103 read from T0287.t04.many.frag # found chain 1yavA in template set T0287 4 :NMRKLFSMI 1yavA 104 :PIMKGFGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15886 # 1hw1A.4.122 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 4 :NMRKLFSMI 1hw1A 123 :KAQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15887 # 1yqyA.4.30 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 4 :NMRKLFSMI 1yqyA 288 :EGRGLLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15888 # 1ua4A.4.240 read from T0287.t04.many.frag # found chain 1ua4A in template set T0287 4 :NMRKLFSMI 1ua4A 241 :NYKEPFEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15889 # 1v74B.4.4 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 4 :NMRKLFSMI 1v74B 5 :AMIDLAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=15890 # 1sd4A.4.10 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 4 :NMRKLFSMI 1sd4A 11 :AEWDVMNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=15891 # 1u7nA.4.191 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 4 :NMRKLFSMI 1u7nA 189 :LTKKAFELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15892 # 1z7xW.4.214 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 4 :NMRKLFSMI 1z7xW 214 :NCRDLCGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15893 # 1n1bA.4.207 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 4 :NMRKLFSMI 1n1bA 257 :EARWFIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15894 # 1b25A.4.503 read from T0287.t04.many.frag # found chain 1b25A in template set T0287 4 :NMRKLFSMI 1b25A 504 :YYPKLLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15895 # 1j93A.4.168 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 4 :NMRKLFSMI 1j93A 168 :NFTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15896 # 1wu7A.5.179 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 5 :MRKLFSMIA 1wu7A 180 :PFSVFSIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=15897 # 1ah7.5.194 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 5 :MRKLFSMIA 1ah7 195 :TKDWFVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15898 # 1efyA.5.7 read from T0287.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0287)A13 (1efyA)F677 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1efyA 669 :IQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15899 # 1xsvA.5.29 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 5 :MRKLFSMIA 1xsvA 27 :QRNYLELFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15900 # 2czsA.5.16 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 5 :MRKLFSMIA 2czsA 39 :HKRFYDAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15901 # 1zpyA.5.16 read from T0287.t04.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMIA 1zpyA 18 :RDMHRAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=15902 # 1ldjA.5.302 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 5 :MRKL 1ldjA 319 :LGRM T0287 11 :MIA 1ldjA 325 :LVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15904 # 1dozA.5.20 read from T0287.t04.many.frag # found chain 1dozA in training set T0287 5 :MRKLFSMIA 1dozA 22 :IERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15905 # 2b6cA.5.124 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 5 :MRKLFSMIA 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15906 # 1m5wA.5.115 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 5 :MRKLFSMIA 1m5wA 116 :MRDACKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15907 # 2b06A.5.124 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 5 :MRKLFSMIA 2b06A 125 :MLPLMEMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=15908 # 1wb9A.5.432 read from T0287.t04.many.frag # found chain 1wb9A in template set T0287 5 :MRKLFSMIA 1wb9A 433 :LDEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15909 # 3htsB.5.15 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 5 :MRKLFSMIA 3htsB 198 :VNKLWSMVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15910 # 1e9rA.5.168 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 5 :MRKLFSMIA 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15911 # 1u7nA.5.192 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 5 :MRKLFSMIA 1u7nA 190 :TKKAFELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15912 # 1xfiA.5.41 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 5 :MRKLFSMIA 1xfiA 42 :EISWINVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15913 # 1n1bA.5.208 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 5 :MRKLFSMIA 1n1bA 258 :ARWFIDAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15914 # 1yavA.5.104 read from T0287.t04.many.frag # found chain 1yavA in template set T0287 5 :MRKLFSMIA 1yavA 105 :IMKGFGMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=15915 # 3thiA.5.123 read from T0287.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 3thiA 132 :IYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=15916 # 1v74B.5.5 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 5 :MRKLFSMIA 1v74B 6 :MIDLAKLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15917 # 1hw1A.5.123 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 5 :MRKLFSMIA 1hw1A 124 :AQEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15918 # 1q08A.5.21 read from T0287.t04.many.frag # found chain 1q08A in template set Warning: unaligning (T0287)A13 (1q08A)I72 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1q08A 64 :IRELLSIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15919 # 1b25A.5.504 read from T0287.t04.many.frag # found chain 1b25A in template set T0287 5 :MRKLFSMIA 1b25A 505 :YPKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=15920 # 2f22A.5.36 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 5 :MRKLFSMIA 2f22A 36 :LRKLFIHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15921 # 1n5uA.5.160 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 5 :MRKLFSMIA 1n5uA 161 :YKAAFTECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=15922 # 1sd4A.5.11 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 5 :MRKLFSMIA 1sd4A 12 :EWDVMNIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=15923 # 1z0wA.5.177 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 5 :MRKLFSMIA 1z0wA 592 :INEVLEHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15924 # 1yvrA.5.147 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 5 :MRKLFSMIA 1yvrA 148 :LRKAVSDWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15925 # 1z7xW.5.215 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 5 :MRKLFSMIA 1z7xW 215 :CRDLCGIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15926 # 2czlA.5.125 read from T0287.t04.many.frag # found chain 2czlA in template set T0287 5 :MRKLFSMIA 2czlA 126 :YDRILPMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15927 # 1wu7A.6.180 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 6 :RKLFSMIAD 1wu7A 181 :FSVFSIIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15928 # 1ah7.6.195 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 6 :RKLFSMIAD 1ah7 196 :KDWFVKAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15929 # 1efyA.6.8 read from T0287.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0287)A13 (1efyA)F677 because G (3-10) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 1efyA 670 :QDLIKMI T0287 14 :D 1efyA 678 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=15931 # 1xsvA.6.30 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 6 :RKLFSMIAD 1xsvA 28 :RNYLELFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15932 # 2czsA.6.17 read from T0287.t04.many.frag # found chain 2czsA in template set T0287 6 :RKLFSMIAD 2czsA 40 :KRFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15933 # 1dozA.6.21 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1dozA 23 :ERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15934 # 1ldjA.6.303 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 6 :RKL 1ldjA 320 :GRM T0287 11 :MIAD 1ldjA 325 :LVSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=15936 # 1zpyA.6.17 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 6 :RKLFSMIAD 1zpyA 18 :RDMHRAIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15937 # 2b6cA.6.125 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)A13 (2b6cA)Y130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 2b6cA 123 :PTIFALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=15938 # 1m5wA.6.116 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 6 :RKLFSMIAD 1m5wA 117 :RDACKRLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15939 # 1n5uA.6.161 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 6 :RKLFSMIAD 1n5uA 162 :KAAFTECCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15940 # 1v74B.6.6 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 6 :RKLFSMIAD 1v74B 7 :IDLAKLFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15941 # 1yavA.6.105 read from T0287.t04.many.frag # found chain 1yavA in template set T0287 6 :RKLFSMIAD 1yavA 106 :MKGFGMVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15942 # 1u7nA.6.193 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 6 :RKLFSMIAD 1u7nA 191 :KKAFELLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15943 # 1n1bA.6.209 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 6 :RKLFSMIAD 1n1bA 259 :RWFIDAYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15944 # 3htsB.6.16 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 6 :RKLFSMIAD 3htsB 199 :NKLWSMVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=15945 # 2b06A.6.125 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 6 :RKLFSMIAD 2b06A 126 :LPLMEMMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15946 # 1wb9A.6.433 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 T0287 6 :RKLFSMIA 1wb9A 434 :DEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=15947 # 1hw1A.6.124 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1hw1A 125 :QEVLATAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=15948 # 1xfiA.6.42 read from T0287.t04.many.frag # found chain 1xfiA in training set T0287 6 :RKLFSMIAD 1xfiA 43 :ISWINVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15949 # 1skvA.6.7 read from T0287.t04.many.frag # found chain 1skvA in template set T0287 6 :RKLFSMIAD 1skvA 8 :KELFEMLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15950 # 1z0wA.6.178 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1z0wA 593 :NEVLEHVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=15951 # 1q08A.6.22 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 6 :RKLFSMIAD 1q08A 65 :RELLSIRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=15952 # 1sd4A.6.12 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 6 :RKLFSMIAD 1sd4A 13 :WDVMNIIWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15953 # 1b43A.6.247 read from T0287.t04.many.frag # found chain 1b43A in template set T0287 6 :RKLFSMIAD 1b43A 247 :KKALEIVRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15954 # 3thiA.6.124 read from T0287.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 3thiA 133 :YELYKKI T0287 14 :D 3thiA 141 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=15956 # 1b25A.6.505 read from T0287.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)D14 (1b25A)G514 because T (delta_L) conformation "forbidden" or filtered. T0287 6 :RKLFSMIA 1b25A 506 :PKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=15957 # 1yvrA.6.148 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 6 :RKLFSMIAD 1yvrA 149 :RKAVSDWYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=15958 # 1f7lA.6.12 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15959 # 1elkA.6.37 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 6 :RKLFSMIAD 1elkA 34 :MEICDIINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15960 # 1ah7.7.196 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 7 :KLFSMIADS 1ah7 197 :DWFVKAAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15961 # 1wu7A.7.181 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 7 :KLFSMIADS 1wu7A 182 :SVFSIIDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=15962 # 1efyA.7.9 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 7 :KLFSMIADS 1efyA 671 :DLIKMIFDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15963 # 2czsA.7.18 read from T0287.t04.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 2czsA 41 :RFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=15964 # 1dozA.7.22 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1dozA 24 :RYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=15965 # 1u7nA.7.194 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 7 :KLFSMIADS 1u7nA 192 :KAFELLAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=15966 # 1elkA.7.38 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 7 :KLFSMIADS 1elkA 35 :EICDIINET Number of specific fragments extracted= 1 number of extra gaps= 0 total=15967 # 1hw1A.7.125 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1hw1A 126 :EVLATAN T0287 15 :S 1hw1A 134 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=15969 # 1n5uA.7.162 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 7 :KLFSMIADS 1n5uA 163 :AAFTECCQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15970 # 1ldjA.7.304 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 7 :KL 1ldjA 321 :RM T0287 11 :MIADS 1ldjA 325 :LVSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=15972 # 1xsvA.7.31 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 7 :KLFSMIADS 1xsvA 29 :NYLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15973 # 2b06A.7.126 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 7 :KLFSMIADS 2b06A 127 :PLMEMMEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15974 # 1z0wA.7.179 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 7 :KLFSMIADS 1z0wA 594 :EVLEHVLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=15975 # 1q08A.7.23 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 7 :KLFSMIADS 1q08A 66 :ELLSIRIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=15976 # 1b43A.7.248 read from T0287.t04.many.frag # found chain 1b43A in template set T0287 7 :KLFSMIADS 1b43A 248 :KALEIVRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15977 # 3htsB.7.17 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 7 :KLFSMIADS 3htsB 200 :KLWSMVNDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15978 # 1v74B.7.7 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 7 :KLFSMIADS 1v74B 8 :DLAKLFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15979 # 1n1bA.7.210 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 7 :KLFSMIADS 1n1bA 260 :WFIDAYARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=15980 # 1qv9A.7.81 read from T0287.t04.many.frag # found chain 1qv9A in training set T0287 7 :KLFSMIADS 1qv9A 82 :KAREMLADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15981 # 1f7lA.7.13 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 7 :KLFSMIADS 1f7lA 14 :RIASMAGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15982 # 1m5wA.7.117 read from T0287.t04.many.frag # found chain 1m5wA in template set T0287 7 :KLFSMIADS 1m5wA 118 :DACKRLADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=15983 # 1sd4A.7.13 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 7 :KLFSMIADS 1sd4A 14 :DVMNIIWDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=15984 # 3thiA.7.125 read from T0287.t04.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 7 :KLFSMI 3thiA 134 :ELYKKI T0287 14 :DS 3thiA 141 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=15986 # 1zpyA.7.18 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 7 :KLFSMIADS 1zpyA 19 :DMHRAIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=15987 # 1skvA.7.8 read from T0287.t04.many.frag # found chain 1skvA in template set T0287 7 :KLFSMIADS 1skvA 9 :ELFEMLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=15988 # 2b6cA.7.126 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)D14 (2b6cA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 2b6cA 124 :TIFALFY T0287 15 :S 2b6cA 132 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=15990 # 1zv1A.7.14 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 7 :KLFSMI 1zv1A 15 :KLLEKF T0287 14 :DS 1zv1A 22 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=15992 # 1g8mA.7.153 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 7 :KLFSMIADS 1g8mA 154 :SVAKEMAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=15993 # 1wb9A.7.434 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 7 :KLFSMIA 1wb9A 435 :EWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=15994 # 1h6kA.7.496 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 7 :KLFSMIADS 1h6kA 516 :EIFSILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=15995 # 1ah7.8.197 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 8 :LFSMIADSK 1ah7 198 :WFVKAAVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15996 # 1wu7A.8.182 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 8 :LFSMIADSK 1wu7A 183 :VFSIIDRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=15997 # 1elkA.8.39 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 8 :LFSMIADSK 1elkA 36 :ICDIINETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=15998 # 1z0wA.8.180 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIA 1z0wA 595 :VLEHVL T0287 15 :SK 1z0wA 602 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16000 # 1n5uA.8.163 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 8 :LFSMIADSK 1n5uA 164 :AFTECCQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16001 # 1u7nA.8.195 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 8 :LFSMIADSK 1u7nA 193 :AFELLAADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16002 # 1dozA.8.23 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)A13 (1dozA)R30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMI 1dozA 25 :YYTHI T0287 16 :K 1dozA 33 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=16004 # 1f7lA.8.14 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 8 :LFSMIADSK 1f7lA 15 :IASMAGRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16005 # 1xsvA.8.32 read from T0287.t04.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIADS 1xsvA 30 :YLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16006 # 1efyA.8.10 read from T0287.t04.many.frag # found chain 1efyA in template set T0287 8 :LFSMIADSK 1efyA 672 :LIKMIFDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16007 # 1b43A.8.249 read from T0287.t04.many.frag # found chain 1b43A in template set T0287 8 :LFSMIADSK 1b43A 249 :ALEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16008 # 1q08A.8.24 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 8 :LFSMIADSK 1q08A 67 :LLSIRIDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16009 # 2b06A.8.127 read from T0287.t04.many.frag # found chain 2b06A in template set T0287 8 :LFSMIADSK 2b06A 128 :LMEMMEAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16010 # 2czsA.8.19 read from T0287.t04.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 2czsA 42 :FYDAFAQ T0287 16 :K 2czsA 50 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=16012 # 1ldjA.8.305 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 8 :L 1ldjA 322 :M T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16014 # 3htsB.8.18 read from T0287.t04.many.frag # found chain 3htsB in training set T0287 8 :LFSMIADSK 3htsB 201 :LWSMVNDKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16015 # 1t0qB.8.270 read from T0287.t04.many.frag # found chain 1t0qB in template set T0287 8 :LFSMIADSK 1t0qB 271 :LVKMALEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16016 # 1qv9A.8.82 read from T0287.t04.many.frag # found chain 1qv9A in training set T0287 8 :LFSMIADSK 1qv9A 83 :AREMLADSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16017 # 1zc6A.8.169 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1zc6A 170 :LTQMALD T0287 16 :K 1zc6A 178 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=16019 # 1sd4A.8.14 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 8 :LFSMIADSK 1sd4A 15 :VMNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16020 # 1v74B.8.8 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 8 :LFSMIADSK 1v74B 9 :LAKLFLASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16021 # 1g8mA.8.154 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 8 :LFSMIADSK 1g8mA 155 :VAKEMAASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16022 # 1hw1A.8.126 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 8 :LFSMIADSK 1hw1A 127 :VLATANEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16023 # 1tn6A.8.174 read from T0287.t04.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)D14 (1tn6A)D181 because D (zeta) conformation "forbidden" or filtered. T0287 8 :LFSMIA 1tn6A 175 :LVEWLR T0287 15 :SK 1tn6A 182 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16025 # 1otvA.8.192 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 8 :LFSMIADSK 1otvA 193 :LAKAYCDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16026 # 1ak0.8.92 read from T0287.t04.many.frag # found chain 1ak0 in training set T0287 8 :LFSMIADSK 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16027 # 1hf8A.8.44 read from T0287.t04.many.frag # found chain 1hf8A in template set T0287 8 :LFSMIADSK 1hf8A 45 :LIQCTNEMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16028 # 1zv1A.8.15 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)I12 (1zv1A)F20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSM 1zv1A 16 :LLEK T0287 14 :DSK 1zv1A 22 :YPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=16030 # 1n1bA.8.211 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 8 :LFSMIADSK 1n1bA 261 :FIDAYARRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16031 # 1ej0A.8.79 read from T0287.t04.many.frag # found chain 1ej0A in training set T0287 8 :LFSMIADSK 1ej0A 109 :LLERVGDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16032 # 1ah7.9.198 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 9 :FSMIADSKD 1ah7 199 :FVKAAVSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16033 # 1elkA.9.40 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 9 :FSMIADSKD 1elkA 37 :CDIINETEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16034 # 1n5uA.9.164 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 9 :FSMIADSKD 1n5uA 165 :FTECCQAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16035 # 1z0wA.9.181 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADS 1z0wA 596 :LEHVLED T0287 17 :D 1z0wA 604 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16037 # 1u7nA.9.196 read from T0287.t04.many.frag # found chain 1u7nA in template set T0287 9 :FSMIADSKD 1u7nA 194 :FELLAADET Number of specific fragments extracted= 1 number of extra gaps= 0 total=16038 # 1otvA.9.193 read from T0287.t04.many.frag # found chain 1otvA in template set Warning: unaligning (T0287)A13 (1otvA)C198 because N (gamma') conformation "forbidden" or filtered. T0287 9 :FSMI 1otvA 194 :AKAY T0287 14 :DSKD 1otvA 199 :DSAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16040 # 1b43A.9.250 read from T0287.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 T0287 9 :FSMIADSK 1b43A 250 :LEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16041 # 1f7lA.9.15 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 9 :FSMIADSKD 1f7lA 16 :ASMAGRQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16042 # 1g8mA.9.155 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 9 :FSMIADSKD 1g8mA 156 :AKEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16043 # 1t0qB.9.271 read from T0287.t04.many.frag # found chain 1t0qB in template set T0287 9 :FSMIADSKD 1t0qB 272 :VKMALEKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16044 # 1q08A.9.25 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 9 :FSMIADSKD 1q08A 68 :LSIRIDPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16045 # 1wu7A.9.183 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 9 :FSMIADSKD 1wu7A 184 :FSIIDRYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16046 # 1ldjA.9.306 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 Warning: unaligning (T0287)S15 (1ldjA)I329 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ldjA)D331 because L (left) conformation "forbidden" or filtered. T0287 11 :MIAD 1ldjA 325 :LVSR T0287 16 :K 1ldjA 330 :Q Number of specific fragments extracted= 2 number of extra gaps= 3 total=16048 # 2czsA.9.20 read from T0287.t04.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIAD 2czsA 43 :YDAFAQ T0287 16 :KD 2czsA 50 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16050 # 1zc6A.9.170 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIAD 1zc6A 171 :TQMALD T0287 16 :KD 1zc6A 178 :RH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16052 # 1hw1A.9.127 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIA 1hw1A 128 :LATAN T0287 15 :SKD 1hw1A 134 :VAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16054 # 1qkrA.9.55 read from T0287.t04.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)S15 (1qkrA)G940 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIAD 1qkrA 934 :SRLVRG T0287 16 :KD 1qkrA 941 :SG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16056 # 1n1bA.9.212 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 9 :FSMIADSKD 1n1bA 262 :IDAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16057 # 1tn6A.9.175 read from T0287.t04.many.frag # found chain 1tn6A in training set T0287 9 :FSMIADSKD 1tn6A 176 :VEWLRDPSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16058 # 1dozA.9.24 read from T0287.t04.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1dozA)K34 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIA 1dozA 26 :YTHIR T0287 15 :SK 1dozA 32 :GR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16060 # 1v58A.9.145 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 9 :FSMIADSKD 1v58A 146 :AAAILASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16061 # 1sd4A.9.15 read from T0287.t04.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)D17 (1sd4A)S24 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1sd4A 16 :MNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16062 # 1xsvA.9.33 read from T0287.t04.many.frag # found chain 1xsvA in training set T0287 9 :FSMIADSKD 1xsvA 31 :LELFYLEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16063 # 1qv9A.9.83 read from T0287.t04.many.frag # found chain 1qv9A in training set Warning: unaligning (T0287)K16 (1qv9A)E91 because G (3-10) conformation "forbidden" or filtered. T0287 9 :FSMIADS 1qv9A 84 :REMLADS T0287 17 :D 1qv9A 92 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=16065 # 2b06A.9.128 read from T0287.t04.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)D17 (2b06A)K137 because E (beta_S) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 2b06A 129 :MEMMEAPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=16066 # 1zv1A.9.16 read from T0287.t04.many.frag # found chain 1zv1A in template set T0287 9 :FSMIADSKD 1zv1A 17 :LEKFRYPWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16067 # 1ak0.9.93 read from T0287.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)D17 (1ak0)L102 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1ak0 94 :TQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=16068 # 1xttA.9.14 read from T0287.t04.many.frag # found chain 1xttA in training set Warning: unaligning (T0287)D17 (1xttA)T23 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1xttA 15 :LTQLRDKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16069 # 1tu9A.9.12 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1tu9A 11 :YGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 1 total=16070 # 1ci4A.9.45 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1ci4A 46 :LGQFLVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16071 # 1n5uA.10.165 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 10 :SMIADSKDK 1n5uA 166 :TECCQAADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16072 # 1ah7.10.199 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 10 :SMIADSKDK 1ah7 200 :VKAAVSQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16073 # 1otvA.10.194 read from T0287.t04.many.frag # found chain 1otvA in template set Warning: unaligning (T0287)A13 (1otvA)C198 because N (gamma') conformation "forbidden" or filtered. T0287 10 :SMI 1otvA 195 :KAY T0287 14 :DSKDK 1otvA 199 :DSAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16075 # 1z0wA.10.182 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 10 :SMIADSKDK 1z0wA 597 :EHVLEDGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16076 # 1elkA.10.41 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 10 :SMIADSKDK 1elkA 38 :DIINETEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16077 # 1v58A.10.146 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 10 :SMIADSKDK 1v58A 147 :AAILASKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16078 # 1n1bA.10.213 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 10 :SMIADSKDK 1n1bA 263 :DAYARRPDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16079 # 1qkrA.10.56 read from T0287.t04.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1qkrA 935 :RLVRGGSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=16080 # 1t0qB.10.272 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1t0qB 273 :KMALEKE T0287 18 :K 1t0qB 281 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=16082 # 1g8mA.10.156 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 10 :SMIADSKDK 1g8mA 157 :KEMAASKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16083 # 1hw1A.10.128 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIA 1hw1A 129 :ATAN T0287 15 :SKDK 1hw1A 134 :VADH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16085 # 1f7lA.10.16 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 10 :SMIADSKDK 1f7lA 17 :SMAGRQKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16086 # 1ci4A.10.46 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1ci4A 47 :GQFLVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16087 # 1zc6A.10.171 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIAD 1zc6A 172 :QMALD T0287 16 :K 1zc6A 178 :R T0287 18 :K 1zc6A 180 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=16090 # 1zv1A.10.17 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)I12 (1zv1A)F20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1zv1A)L26 because G (3-10) conformation "forbidden" or filtered. T0287 10 :SM 1zv1A 18 :EK T0287 15 :SKD 1zv1A 23 :PWE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16092 # 1q08A.10.26 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 10 :SMIADSKDK 1q08A 69 :SIRIDPEHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16093 # 1u7nA.10.197 read from T0287.t04.many.frag # found chain 1u7nA in template set Warning: unaligning (T0287)K18 (1u7nA)I203 because E (beta_S) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1u7nA 195 :ELLAADET Number of specific fragments extracted= 1 number of extra gaps= 1 total=16094 # 1b43A.10.251 read from T0287.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1b43A)P259 T0287 10 :SMIADSK 1b43A 251 :EIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16095 # 1ldjA.10.307 read from T0287.t04.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 11 :MIADSKDK 1ldjA 325 :LVSRIQDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=16096 # 1tu9A.10.13 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 10 :SMIADSKDK 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16097 # 1wb9A.10.437 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 10 :SMIA 1wb9A 438 :ALAD T0287 16 :KDK 1wb9A 444 :TDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16099 # 1zybA.10.193 read from T0287.t04.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 10 :SMI 1zybA 182 :RCL T0287 14 :DSKDK 1zybA 186 :DTRLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16101 # 1ak0.10.94 read from T0287.t04.many.frag # found chain 1ak0 in training set T0287 10 :SMIADSKDK 1ak0 95 :QRVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16102 # 1aa7A.10.11 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 10 :SMIADSKDK 1aa7A 12 :LSIIPSGPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16103 # 1qv9A.10.84 read from T0287.t04.many.frag # found chain 1qv9A in training set T0287 10 :SMIADSKDK 1qv9A 85 :EMLADSEYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16104 # 2bnlA.10.8 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 10 :SMIADSKDK 2bnlA 9 :QFIAENQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16105 # 1tn6A.10.176 read from T0287.t04.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1tn6A)D181 because D (zeta) conformation "forbidden" or filtered. T0287 10 :SMI 1tn6A 177 :EWL T0287 15 :SKDK 1tn6A 182 :PSQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16107 # 1i4dA.10.52 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 10 :SMIADSKDK 1i4dA 74 :DLSQKSPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16108 # 1xttA.10.15 read from T0287.t04.many.frag # found chain 1xttA in training set T0287 10 :SMIADSKDK 1xttA 16 :TQLRDKYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16109 # 1v74B.10.10 read from T0287.t04.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)D17 (1v74B)I18 because E (beta_S) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1v74B 11 :KLFLASK T0287 18 :K 1v74B 19 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=16111 # 1n5uA.11.166 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 11 :MIADSKDKK 1n5uA 167 :ECCQAADKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16112 # 1otvA.11.195 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 11 :MIADSKDKK 1otvA 196 :AYCDSAEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16113 # 1qkrA.11.57 read from T0287.t04.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)D14 (1qkrA)G939 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIA 1qkrA 936 :LVR T0287 15 :SKDKK 1qkrA 940 :GSGNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16115 # 1z0wA.11.183 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIADS 1z0wA 598 :HVLED T0287 17 :DKK 1z0wA 604 :KKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16117 # 1ah7.11.200 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 11 :MIADSKDKK 1ah7 201 :KAAVSQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16118 # 1v58A.11.147 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 11 :MIADSKDKK 1v58A 148 :AILASKDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16119 # 1n1bA.11.214 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 11 :MIADSKDKK 1n1bA 264 :AYARRPDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16120 # 1elkA.11.42 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 11 :MIADSKDKK 1elkA 39 :IINETEEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16121 # 1ci4A.11.47 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 11 :MIADSK 1ci4A 48 :QFLVLK T0287 18 :KK 1ci4A 55 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16123 # 1zv1A.11.18 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MI 1zv1A 19 :KF T0287 15 :SKDKK 1zv1A 23 :PWELM Number of specific fragments extracted= 2 number of extra gaps= 1 total=16125 # 1aa7A.11.12 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)I12 (1aa7A)I14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :M 1aa7A 13 :S T0287 13 :ADS 1aa7A 15 :IPS T0287 17 :DKK 1aa7A 19 :PLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16128 # 1t0qB.11.273 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADSK 1t0qB 274 :MALEKE T0287 18 :KK 1t0qB 281 :NR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16130 # 1ak0.11.95 read from T0287.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 T0287 11 :MIADSKDK 1ak0 96 :RVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=16131 # 1zc6A.11.172 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 11 :MIADSKDKK 1zc6A 173 :MALDGRHSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16132 # 1hw1A.11.129 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 11 :MIADSKDKK 1hw1A 130 :TANEVADHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16133 # 1g8mA.11.157 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 11 :MIADSKDKK 1g8mA 158 :EMAASKDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16134 # 2bl2A.11.42 read from T0287.t04.many.frag # found chain 2bl2A in template set T0287 11 :MIADSKDKK 2bl2A 43 :ALTTSQPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16135 # 1kxu.11.137 read from T0287.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIA 1kxu 128 :NLR T0287 15 :SKDKK 1kxu 132 :SPLGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16137 # 1zybA.11.194 read from T0287.t04.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zybA)D186 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MI 1zybA 183 :CL T0287 15 :SKDKK 1zybA 187 :TRLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16139 # 1tu9A.11.14 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K16 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADS 1tu9A 13 :RCCAS T0287 18 :KK 1tu9A 20 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16141 # 1i4dA.11.53 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 11 :MIADSKDKK 1i4dA 75 :LSQKSPELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16142 # 1wb9A.11.438 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 11 :MIA 1wb9A 439 :LAD T0287 16 :KDKK 1wb9A 444 :TDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16144 # 1on2A.11.30 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1on2A)V34 because E (beta_S) conformation "forbidden" or filtered. T0287 11 :MI 1on2A 31 :AL T0287 15 :SKDKK 1on2A 35 :HPSSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16146 # 1f7lA.11.17 read from T0287.t04.many.frag # found chain 1f7lA in training set T0287 11 :MIADSKDKK 1f7lA 18 :MAGRQKRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16147 # 1jfbA.11.156 read from T0287.t04.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MI 1jfbA 156 :LL T0287 14 :DSKDKK 1jfbA 159 :VPFNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16149 # 1ez3A.11.36 read from T0287.t04.many.frag # found chain 1ez3A in template set Warning: unaligning (T0287)D17 (1ez3A)N66 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ez3A)P67 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSK 1ez3A 60 :AILASP T0287 19 :K 1ez3A 68 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=16151 # 1rzhM.11.236 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 11 :MIADSKDKK 1rzhM 237 :QIADRGTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16152 # 1xttA.11.16 read from T0287.t04.many.frag # found chain 1xttA in training set Warning: unaligning (T0287)D17 (1xttA)T23 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSK 1xttA 17 :QLRDKY T0287 18 :KK 1xttA 24 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16154 # 1q08A.11.27 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 11 :MIADSKDKK 1q08A 70 :IRIDPEHHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16155 # 1oksA.11.12 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 11 :MIADSKDKK 1oksA 13 :SSRLEEDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16156 # 1n5uA.12.167 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)D17 (1n5uA)D173 because D (zeta) conformation "forbidden" or filtered. T0287 12 :IADSK 1n5uA 168 :CCQAA T0287 18 :KKE 1n5uA 174 :KAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16158 # 1otvA.12.196 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 12 :IADSKDKKE 1otvA 197 :YCDSAEKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16159 # 1qkrA.12.58 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 12 :IADSKDKKE 1qkrA 937 :VRGGSGNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16160 # 1z0wA.12.184 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :ADS 1z0wA 600 :LED T0287 17 :DKKE 1z0wA 604 :KKKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=16162 # 1aa7A.12.13 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IA 1aa7A 14 :II T0287 15 :S 1aa7A 17 :S T0287 17 :DKKE 1aa7A 19 :PLKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=16165 # 1ah7.12.201 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 12 :IADSKDKKE 1ah7 202 :AAVSQEYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16166 # 1v58A.12.148 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 12 :IADSKDKKE 1v58A 149 :ILASKDPAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16167 # 1zv1A.12.19 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zv1A 20 :F T0287 14 :DSKDKKE 1zv1A 22 :YPWELMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16169 # 1n1bA.12.215 read from T0287.t04.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 (1n1bA)N272 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IADSKD 1n1bA 265 :YARRPD T0287 20 :E 1n1bA 273 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=16171 # 1elkA.12.43 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 12 :IADSKDKKE 1elkA 40 :INETEEGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16172 # 1ci4A.12.48 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 12 :IADSK 1ci4A 49 :FLVLK T0287 18 :KKE 1ci4A 55 :DED Number of specific fragments extracted= 2 number of extra gaps= 1 total=16174 # 1hw1A.12.130 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IA 1hw1A 131 :AN T0287 15 :SKDKKE 1hw1A 134 :VADHAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16176 # 1kxu.12.138 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 12 :IADSKDKKE 1kxu 129 :LRESPLGQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16177 # 1t0qB.12.274 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADSK 1t0qB 275 :ALEKE T0287 18 :KKE 1t0qB 281 :NRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16179 # 1ak0.12.96 read from T0287.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 12 :IADSKDK 1ak0 97 :VSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=16180 # 1on2A.12.31 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)I12 (1on2A)L32 because G (3-10) conformation "forbidden" or filtered. T0287 13 :ADSKDKKE 1on2A 33 :AVHPSSVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16181 # 1rzhM.12.237 read from T0287.t04.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)S15 (1rzhM)R241 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IAD 1rzhM 238 :IAD T0287 16 :KDKKE 1rzhM 242 :GTAAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16183 # 1i4dA.12.54 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 12 :IADSKDKKE 1i4dA 76 :SQKSPELQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16184 # 2bl2A.12.43 read from T0287.t04.many.frag # found chain 2bl2A in template set T0287 12 :IADSKDKKE 2bl2A 44 :LTTSQPEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16185 # 1wb9A.12.439 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 12 :IA 1wb9A 440 :AD T0287 16 :KDKKE 1wb9A 444 :TDYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16187 # 1jfbA.12.157 read from T0287.t04.many.frag # found chain 1jfbA in training set T0287 12 :IADSKDKKE 1jfbA 157 :LGVPFNDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16188 # 1m0wA.12.3 read from T0287.t04.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKE 1m0wA 7 :SKDQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16189 # 1oksA.12.13 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 12 :IADSKDKKE 1oksA 14 :SRLEEDRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16190 # 1tu9A.12.15 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADSK 1tu9A 14 :CCAST T0287 18 :KKE 1tu9A 20 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16192 # 1zybA.12.195 read from T0287.t04.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zybA 184 :L T0287 14 :DSKDKKE 1zybA 186 :DTRLNIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16194 # 1lvaA.12.26 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1lvaA 403 :A T0287 14 :DSKDKKE 1lvaA 405 :LSLEETR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16196 # 1ymtA.12.18 read from T0287.t04.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)D14 (1ymtA)E237 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :IA 1ymtA 235 :EP T0287 15 :SKDKKE 1ymtA 238 :EDQVRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16198 # 1q52A.12.266 read from T0287.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q52A)L267 Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 13 :ADS 1q52A 268 :LDD T0287 17 :DKKE 1q52A 272 :LVGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=16200 # 1zc6A.12.173 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E20 (1zc6A)S182 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IAD 1zc6A 174 :ALD T0287 16 :K 1zc6A 178 :R T0287 18 :KK 1zc6A 180 :SH Number of specific fragments extracted= 3 number of extra gaps= 3 total=16203 # 1r6xA.12.11 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 12 :IADSKDKKE 1r6xA 13 :IARDALKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16204 # 1qkrA.13.59 read from T0287.t04.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 13 :ADSKD 1qkrA 938 :RGGSG T0287 19 :KEK 1qkrA 944 :KRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16206 # 1n5uA.13.168 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 13 :ADSKDKKEK 1n5uA 169 :CQAADKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16207 # 1otvA.13.197 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 13 :ADSKDKKEK 1otvA 198 :CDSAEKQNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16208 # 1aa7A.13.14 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1aa7A 15 :I T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEK 1aa7A 19 :PLKAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=16211 # 1z0wA.13.185 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :ADS 1z0wA 600 :LED T0287 17 :DKKEK 1z0wA 604 :KKKNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16213 # 1zv1A.13.20 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1zv1A 22 :YPWELMPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16214 # 1on2A.13.32 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1on2A 34 :VHPSSVTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16215 # 1ah7.13.202 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 13 :ADSKDKKEK 1ah7 203 :AVSQEYADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16216 # 1ci4A.13.49 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)S15 (1ci4A)L52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 13 :AD 1ci4A 50 :LV T0287 18 :KKEK 1ci4A 55 :DEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16218 # 1lvaA.13.27 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1lvaA 405 :LSLEETRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16219 # 1kxu.13.139 read from T0287.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1kxu 130 :R T0287 15 :SKDKKEK 1kxu 132 :SPLGQEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16221 # 1n1bA.13.216 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 13 :ADSKDKKEK 1n1bA 266 :ARRPDMNPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16222 # 1m0wA.13.4 read from T0287.t04.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEK 1m0wA 7 :SKDQLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16223 # 1oksA.13.14 read from T0287.t04.many.frag # found chain 1oksA in training set Warning: unaligning (T0287)D14 (1oksA)L16 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :A 1oksA 15 :R T0287 15 :SKDKKEK 1oksA 17 :EEDRKRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16225 # 1hw1A.13.131 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 13 :A 1hw1A 132 :N T0287 15 :SKDKKEK 1hw1A 134 :VADHADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16227 # 1v58A.13.149 read from T0287.t04.many.frag # found chain 1v58A in training set T0287 13 :ADSKDKKEK 1v58A 150 :LASKDPAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16228 # 1elkA.13.44 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 13 :ADSKDKKEK 1elkA 41 :NETEEGPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16229 # 1rzhM.13.238 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 13 :ADSKDKKEK 1rzhM 239 :ADRGTAAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16230 # 1q52A.13.267 read from T0287.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 13 :ADS 1q52A 268 :LDD T0287 17 :DKKEK 1q52A 272 :LVGQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16232 # 1t0qB.13.275 read from T0287.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)A13 (1t0qB)L276 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1t0qB)E279 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 14 :DS 1t0qB 277 :EK T0287 18 :KKEK 1t0qB 281 :NREV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16234 # 1ymtA.13.19 read from T0287.t04.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)A13 (1ymtA)P236 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1ymtA 237 :EEDQVRAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16235 # 1ak0.13.97 read from T0287.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)D17 (1ak0)L102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 13 :ADSK 1ak0 98 :SDSS T0287 18 :K 1ak0 103 :S T0287 21 :K 1ak0 106 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=16238 # 1jfbA.13.158 read from T0287.t04.many.frag # found chain 1jfbA in training set T0287 13 :ADSKDKKEK 1jfbA 158 :GVPFNDLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16239 # 1i4dA.13.55 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 13 :ADSKDKKEK 1i4dA 77 :QKSPELQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16240 # 1r6xA.13.12 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 13 :ADSKDKKEK 1r6xA 14 :ARDALKKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16241 # 2ayuA.13.86 read from T0287.t04.many.frag # found chain 2ayuA in template set Warning: unaligning (T0287)A13 (2ayuA)G87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (2ayuA)L88 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEK 2ayuA 89 :PKNVKEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16242 # 1yrtA.13.208 read from T0287.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)K16 (1yrtA)G212 because T (delta_L) conformation "forbidden" or filtered. T0287 13 :ADS 1yrtA 209 :VTS T0287 17 :DKKEK 1yrtA 213 :DSVTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16244 # 1szhA.13.17 read from T0287.t04.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)A13 (1szhA)C32 because G (3-10) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1szhA 33 :CTRNRQEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=16245 # 1wb9A.13.440 read from T0287.t04.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 13 :A 1wb9A 441 :D T0287 16 :KDKKEK 1wb9A 444 :TDYLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=16247 # 2bl2A.13.44 read from T0287.t04.many.frag # found chain 2bl2A in template set T0287 13 :ADSKDKKEK 2bl2A 45 :TTSQPEKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16248 # 1qkrA.14.60 read from T0287.t04.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)K18 (1qkrA)N943 because G (3-10) conformation "forbidden" or filtered. T0287 14 :DSKD 1qkrA 939 :GGSG T0287 19 :KEKL 1qkrA 944 :KRAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16250 # 1n5uA.14.169 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 14 :DSKDKKEKL 1n5uA 170 :QAADKAACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16251 # 1aa7A.14.15 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKL 1aa7A 19 :PLKAEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=16253 # 1otvA.14.198 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 14 :DSKDKKEKL 1otvA 199 :DSAEKQNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16254 # 1on2A.14.33 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)S15 (1on2A)H35 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1on2A 34 :V T0287 16 :KDKKEKL 1on2A 36 :PSSVTKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=16256 # 1z0wA.14.186 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 14 :DS 1z0wA 601 :ED T0287 17 :DKKEKL 1z0wA 604 :KKKNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16258 # 1lvaA.14.28 read from T0287.t04.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)D14 (1lvaA)L405 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1lvaA 406 :SLEETRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16259 # 1kxu.14.140 read from T0287.t04.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1kxu 132 :SPLGQEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16260 # 1hw1A.14.132 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 14 :DSKDKKEKL 1hw1A 133 :EVADHADAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16261 # 1rzhM.14.239 read from T0287.t04.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)D14 (1rzhM)D240 because D (zeta) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1rzhM 241 :RGTAAERA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16262 # 1ci4A.14.50 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DS 1ci4A 51 :VL T0287 17 :D 1ci4A 54 :K T0287 19 :KEKL 1ci4A 56 :EDLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=16265 # 1zv1A.14.21 read from T0287.t04.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1zv1A 23 :PWELMPLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=16266 # 1szhA.14.18 read from T0287.t04.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)S15 (1szhA)T34 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1szhA 33 :C T0287 16 :KDKKEKL 1szhA 35 :RNRQECC Number of specific fragments extracted= 2 number of extra gaps= 1 total=16268 # 1m0wA.14.5 read from T0287.t04.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEKL 1m0wA 7 :SKDQLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16269 # 1r6xA.14.13 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 14 :DSKDKKEKL 1r6xA 15 :RDALKKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16270 # 1yovA.14.237 read from T0287.t04.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1yovA)T236 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKL 1yovA 237 :YKEKEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=16271 # 1ah7.14.203 read from T0287.t04.many.frag # found chain 1ah7 in training set T0287 14 :DSKDKKEKL 1ah7 204 :VSQEYADKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=16272 # 1ymtA.14.20 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 14 :DSKDKKEKL 1ymtA 237 :EEDQVRARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16273 # 1q52A.14.268 read from T0287.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)S15 (1q52A)D270 because G (3-10) conformation "forbidden" or filtered. T0287 14 :D 1q52A 269 :D T0287 16 :KDKKEKL 1q52A 271 :GLVGQQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16275 # 1oksA.14.15 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 14 :DSKDKKEKL 1oksA 16 :LEEDRKRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16276 # 1gxjA.14.40 read from T0287.t04.many.frag # found chain 1gxjA in template set T0287 14 :DSKDKKEKL 1gxjA 525 :EVDEKYSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16277 # 1yiiA.14.28 read from T0287.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)S15 (1yiiA)M31 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1yiiA 30 :G T0287 16 :KDKKEKL 1yiiA 32 :GTDEETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16279 # 1xdpA.14.66 read from T0287.t04.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)D14 (1xdpA)G68 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1xdpA)N70 because G (3-10) conformation "forbidden" or filtered. T0287 15 :S 1xdpA 69 :S T0287 17 :DKKEKL 1xdpA 71 :SHSRHL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16281 # 1g2yA.14.17 read from T0287.t04.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1g2yA)L21 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :DS 1g2yA 18 :ES T0287 18 :KKEKL 1g2yA 22 :SKEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16283 # 1n1bA.14.217 read from T0287.t04.many.frag # found chain 1n1bA in template set T0287 14 :DSKDKKEKL 1n1bA 267 :RRPDMNPLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16284 # 1jfbA.14.159 read from T0287.t04.many.frag # found chain 1jfbA in training set T0287 14 :DSKDKKEKL 1jfbA 159 :VPFNDLEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16285 # 1elkA.14.45 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 14 :DSKDKKEKL 1elkA 42 :ETEEGPKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16286 # 1yrtA.14.209 read from T0287.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1yrtA 211 :SGDSVTDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16287 # 1i4dA.14.56 read from T0287.t04.many.frag # found chain 1i4dA in template set T0287 14 :DSKDKKEKL 1i4dA 78 :KSPELQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16288 # 2ayuA.14.87 read from T0287.t04.many.frag # found chain 2ayuA in template set T0287 14 :DSKDKKEKL 2ayuA 88 :LPKNVKEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16289 # 1qkrA.15.61 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 15 :SKDKKEKLI 1qkrA 940 :GSGNKRALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16290 # 1aa7A.15.16 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKLI 1aa7A 19 :PLKAEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16292 # 1szhA.15.19 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 15 :SKDKKEKLI 1szhA 34 :TRNRQECCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16293 # 1on2A.15.34 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)S15 (1on2A)H35 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1on2A 36 :PSSVTKMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16294 # 1z0wA.15.187 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 15 :SKDKKEKLI 1z0wA 602 :DGKKKNRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16295 # 1otvA.15.199 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 15 :SKDKKEKLI 1otvA 200 :SAEKQNRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=16296 # 1r6xA.15.14 read from T0287.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)S15 (1r6xA)D16 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1r6xA 17 :ALKKNELL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16297 # 1w8iA.15.55 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 15 :SKDKKEKLI 1w8iA 56 :KKLPADKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16298 # 1g2yA.15.18 read from T0287.t04.many.frag # found chain 1g2yA in training set T0287 15 :SKDKKEKLI 1g2yA 19 :SGLSKEALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16299 # 1lvaA.15.29 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 15 :SKDKKEKLI 1lvaA 406 :SLEETRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16300 # 1rzhM.15.240 read from T0287.t04.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)S15 (1rzhM)R241 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1rzhM 242 :GTAAERAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16301 # 1kxu.15.141 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 15 :SKDKKEKLI 1kxu 132 :SPLGQEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16302 # 1n5uA.15.170 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 15 :SKDKKEKLI 1n5uA 171 :AADKAACLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16303 # 1yiiA.15.29 read from T0287.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)D17 (1yiiA)T33 because E (beta_S) conformation "forbidden" or filtered. T0287 15 :SK 1yiiA 31 :MG T0287 18 :KKEKLI 1yiiA 34 :DEETIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16305 # 1hw1A.15.133 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)S15 (1hw1A)V134 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1hw1A 135 :ADHADAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16306 # 1ci4A.15.51 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 15 :SK 1ci4A 52 :LK T0287 18 :KKEKLI 1ci4A 55 :DEDLFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16308 # 1ymtA.15.21 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 15 :SKDKKEKLI 1ymtA 238 :EDQVRARIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16309 # 1yovA.15.238 read from T0287.t04.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKLI 1yovA 237 :YKEKEDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16310 # 1uw4B.15.16 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)S15 (1uw4B)S784 because Y (epsilon') conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1uw4B 785 :KVTTEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16311 # 1r7jA.15.32 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 15 :SKDKKEKLI 1r7jA 33 :SYALTGRYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16312 # 1oksA.15.16 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 15 :SKDKKEKLI 1oksA 17 :EEDRKRYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16313 # 1xdpA.15.67 read from T0287.t04.many.frag # found chain 1xdpA in template set T0287 15 :SKDKKEKLI 1xdpA 69 :SNSHSRHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16314 # 1usyA.15.142 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 15 :SKDKKEKLI 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16315 # 1q52A.15.269 read from T0287.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :S 1q52A 270 :D T0287 17 :DKKEKLI 1q52A 272 :LVGQQLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16317 # 1zv1A.15.22 read from T0287.t04.many.frag # found chain 1zv1A in template set T0287 15 :SKDKKEKLI 1zv1A 23 :PWELMPLMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16318 # 1m0wA.15.6 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 15 :SKDKKEKLI 1m0wA 7 :SKDQLNELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16319 # 1gxjA.15.41 read from T0287.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0287)K19 (1gxjA)Y530 because G (3-10) conformation "forbidden" or filtered. T0287 15 :SKDK 1gxjA 526 :VDEK T0287 20 :EKLI 1gxjA 531 :SLAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16321 # 1x3zB.15.34 read from T0287.t04.many.frag # found chain 1x3zB in template set T0287 15 :SKDKKEKLI 1x3zB 272 :NPEALAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16322 # 1elkA.15.46 read from T0287.t04.many.frag # found chain 1elkA in training set T0287 15 :SKDKKEKLI 1elkA 43 :TEEGPKDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16323 # 1v0jA.15.114 read from T0287.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0287)S15 (1v0jA)K115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)T118 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)T118 T0287 16 :K 1v0jA 116 :Y T0287 19 :KEKLI 1v0jA 119 :PEQAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16325 # 1qkrA.16.62 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 16 :KDKKEKLIE 1qkrA 941 :SGNKRALIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16326 # 1on2A.16.35 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 16 :KDKKEKLIE 1on2A 36 :PSSVTKMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16327 # 1szhA.16.20 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 16 :KDKKEKLIE 1szhA 35 :RNRQECCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16328 # 1r6xA.16.15 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 16 :KDKKEKLIE 1r6xA 17 :ALKKNELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16329 # 1uw4B.16.17 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 16 :KDKKEKLIE 1uw4B 785 :KVTTEKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16330 # 1aa7A.16.17 read from T0287.t04.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1aa7A 19 :PLKAEIAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16331 # 1w8iA.16.56 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 16 :KDKKEKLIE 1w8iA 57 :KLPADKFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16332 # 1lvaA.16.30 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 16 :KDKKEKLIE 1lvaA 407 :LEETRKLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16333 # 1r7jA.16.33 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 16 :KDKKEKLIE 1r7jA 34 :YALTGRYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16334 # 1otvA.16.200 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 16 :KDKKEKLIE 1otvA 201 :AEKQNRMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16335 # 1ci4A.16.52 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 16 :K 1ci4A 53 :K T0287 18 :KKEKLIE 1ci4A 55 :DEDLFRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16337 # 1usyA.16.143 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 16 :KDKKEKLIE 1usyA 144 :KDLHEKVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16338 # 1rzhM.16.241 read from T0287.t04.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)K16 (1rzhM)G242 because E (beta_S) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1rzhM 243 :TAAERAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16339 # 1z0wA.16.188 read from T0287.t04.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1z0wA 604 :KKKNRLMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=16340 # 1g2yA.16.19 read from T0287.t04.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1g2yA 21 :LSKEALIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16341 # 1yovA.16.239 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 16 :KDKKEKLIE 1yovA 237 :YKEKEDFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16342 # 1gxjA.16.42 read from T0287.t04.many.frag # found chain 1gxjA in template set Warning: unaligning (T0287)K19 (1gxjA)Y530 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KDK 1gxjA 527 :DEK T0287 20 :EKLIE 1gxjA 531 :SLAVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16344 # 1ymtA.16.22 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 16 :KDKKEKLIE 1ymtA 239 :DQVRARIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16345 # 1hw1A.16.134 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1hw1A 136 :DHADAFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16346 # 1kxu.16.142 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 16 :KDKKEKLIE 1kxu 133 :PLGQEKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16347 # 1oksA.16.17 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 16 :KDKKEKLIE 1oksA 18 :EDRKRYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16348 # 1yiiA.16.30 read from T0287.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)D17 (1yiiA)T33 because E (beta_S) conformation "forbidden" or filtered. T0287 16 :K 1yiiA 32 :G T0287 18 :KKEKLIE 1yiiA 34 :DEETILK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16350 # 1jr2A.16.139 read from T0287.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIE 1jr2A 122 :AEKLAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16352 # 1q52A.16.270 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 16 :KDKKEKLIE 1q52A 271 :GLVGQQLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16353 # 1p4xA.16.63 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 16 :KDKKEKLIE 1p4xA 64 :QSDLVQHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16354 # 1m0wA.16.7 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 16 :KDKKEKLIE 1m0wA 8 :KDQLNELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16355 # 1xdpA.16.68 read from T0287.t04.many.frag # found chain 1xdpA in template set T0287 16 :KDKKEKLIE 1xdpA 70 :NSHSRHLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16356 # 1x3zB.16.35 read from T0287.t04.many.frag # found chain 1x3zB in template set T0287 16 :KDKKEKLIE 1x3zB 273 :PEALAPLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16357 # 2d28C.16.3 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)K16 (2d28C)R4 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (2d28C)S5 because P (beta_P) conformation "forbidden" or filtered. T0287 18 :KKEKLIE 2d28C 6 :AETRIVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16358 # 1zv1A.16.23 read from T0287.t04.many.frag # found chain 1zv1A in template set T0287 16 :KDKKEKLIE 1zv1A 24 :WELMPLMYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16359 # 1qkrA.17.63 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 17 :DKKEKLIES 1qkrA 942 :GNKRALIQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16360 # 1on2A.17.36 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 17 :DKKEKLIES 1on2A 37 :SSVTKMVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16361 # 1szhA.17.21 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 17 :DKKEKLIES 1szhA 36 :NRQECCIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16362 # 1uw4B.17.18 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 17 :DKKEKLIES 1uw4B 786 :VTTEKVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16363 # 1r6xA.17.16 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 17 :DKKEKLIES 1r6xA 18 :LKKNELLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16364 # 1w8iA.17.57 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 17 :DKKEKLIES 1w8iA 58 :LPADKFLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16365 # 1usyA.17.144 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 17 :DKKEKLIES 1usyA 145 :DLHEKVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16366 # 1aa7A.17.18 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 17 :DKKEKLIES 1aa7A 19 :PLKAEIAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16367 # 1r7jA.17.34 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 17 :DKKEKLIES 1r7jA 35 :ALTGRYIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16368 # 1ci4A.17.53 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 19 :KEKLIES 1ci4A 56 :EDLFREW Number of specific fragments extracted= 1 number of extra gaps= 1 total=16369 # 1lvaA.17.31 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 17 :DKKEKLIES 1lvaA 408 :EETRKLLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16370 # 1jr2A.17.140 read from T0287.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIES 1jr2A 122 :AEKLAEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16372 # 1otvA.17.201 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 17 :DKKEKLIES 1otvA 202 :EKQNRMLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16373 # 1yovA.17.240 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 17 :DKKEKLIES 1yovA 238 :KEKEDFRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16374 # 1ymtA.17.23 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 17 :DKKEKLIES 1ymtA 240 :QVRARIVGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16375 # 1z0wA.17.189 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 17 :DKKEKLIES 1z0wA 604 :KKKNRLMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16376 # 1g2yA.17.20 read from T0287.t04.many.frag # found chain 1g2yA in training set T0287 17 :DKKEKLIES 1g2yA 21 :LSKEALIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16377 # 2d28C.17.4 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 17 :DKKEKLIES 2d28C 5 :SAETRIVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16378 # 1s9rA.17.88 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 17 :DKKEKLIES 1s9rA 89 :EAKDKLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16379 # 1yiiA.17.31 read from T0287.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)K18 (1yiiA)D34 because N (gamma') conformation "forbidden" or filtered. T0287 17 :D 1yiiA 33 :T T0287 19 :KEKLIES 1yiiA 35 :EETILKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16381 # 1q52A.17.271 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 17 :DKKEKLIES 1q52A 272 :LVGQQLFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16382 # 1kxu.17.143 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 17 :DKKEKLIES 1kxu 134 :LGQEKALEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16383 # 1oksA.17.18 read from T0287.t04.many.frag # found chain 1oksA in training set T0287 17 :DKKEKLIES 1oksA 19 :DRKRYLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16384 # 1rzhM.17.242 read from T0287.t04.many.frag # found chain 1rzhM in training set T0287 17 :DKKEKLIES 1rzhM 243 :TAAERAALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16385 # 1m0wA.17.8 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 17 :DKKEKLIES 1m0wA 9 :DQLNELIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16386 # 1x3zB.17.36 read from T0287.t04.many.frag # found chain 1x3zB in template set T0287 17 :DKKEKLIES 1x3zB 274 :EALAPLLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16387 # 1hw1A.17.135 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K18 (1hw1A)H137 because E (beta_S) conformation "forbidden" or filtered. T0287 17 :D 1hw1A 136 :D T0287 19 :KEKLIES 1hw1A 138 :ADAFAEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16389 # 1wu7A.17.192 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 17 :DKKEKLIES 1wu7A 193 :ISREEFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16390 # 1q08A.17.19 read from T0287.t04.many.frag # found chain 1q08A in template set T0287 17 :DKKEKLIES 1q08A 62 :ESIRELLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16391 # 1gk9B.17.313 read from T0287.t04.many.frag # found chain 1gk9B in training set T0287 17 :DKKEKLIES 1gk9B 314 :DPRRQLVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=16392 # 1on2A.18.37 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 18 :KKEKLIESL 1on2A 38 :SVTKMVQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16393 # 1uw4B.18.19 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 18 :KKEKLIESL 1uw4B 787 :TTEKVLRQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16394 # 1r6xA.18.17 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 18 :KKEKLIESL 1r6xA 19 :KKNELLSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16395 # 1r7jA.18.35 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 18 :KKEKLIESL 1r7jA 36 :LTGRYIKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=16396 # 1w8iA.18.58 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 18 :KKEKLIESL 1w8iA 59 :PADKFLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16397 # 1lvaA.18.32 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 18 :KKEKLIESL 1lvaA 409 :ETRKLLQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16398 # 1szhA.18.22 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 18 :KKEKLIESL 1szhA 37 :RQECCIEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16399 # 1qkrA.18.64 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 18 :KKEKLIESL 1qkrA 943 :NKRALIQCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16400 # 1usyA.18.145 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 18 :KKEKLIESL 1usyA 146 :LHEKVLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16401 # 1aa7A.18.19 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 18 :KKEKLIESL 1aa7A 20 :LKAEIAQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16402 # 1jr2A.18.141 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 18 :KKEKLIESL 1jr2A 121 :NAEKLAEYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16403 # 2d28C.18.5 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 18 :KKEKLIESL 2d28C 6 :AETRIVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16404 # 1otvA.18.202 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 18 :KKEKLIESL 1otvA 203 :KQNRMLEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16405 # 1ci4A.18.54 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1ci4A 56 :EDLFREWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16406 # 1i58A.18.103 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)K18 (1i58A)D455 because N (gamma') conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1i58A 456 :KEKIIRKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16407 # 1yovA.18.241 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 18 :KKEKLIESL 1yovA 239 :EKEDFRDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16408 # 1s9rA.18.89 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 18 :KKEKLIESL 1s9rA 90 :AKDKLIEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16409 # 1sflA.18.112 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 18 :KKEKLIESL 1sflA 113 :KHQRIITHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16410 # 1q52A.18.272 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 18 :KKEKLIESL 1q52A 273 :VGQQLFAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16411 # 1z0wA.18.190 read from T0287.t04.many.frag # found chain 1z0wA in template set T0287 18 :KKEKLIESL 1z0wA 605 :KKNRLMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16412 # 1kxu.18.144 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 18 :KKEKLIESL 1kxu 135 :GQEKALEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16413 # 2ahrA.18.170 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 18 :KKEKLIESL 2ahrA 168 :YIYLFIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16414 # 1p4xA.18.65 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 18 :KKEKLIESL 1p4xA 66 :DLVQHIKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16415 # 1ctf.18.17 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 18 :KKEKLIESL 1ctf 64 :NKVAVIKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16416 # 1ymtA.18.24 read from T0287.t04.many.frag # found chain 1ymtA in training set T0287 18 :KKEKLIESL 1ymtA 241 :VRARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16417 # 1wu7A.18.193 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K18 (1wu7A)S194 because P (beta_P) conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1wu7A 195 :REEFVDQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16418 # 1yvrA.18.220 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 18 :KKEKLIESL 1yvrA 221 :ETEKVLKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16419 # 1m0wA.18.9 read from T0287.t04.many.frag # found chain 1m0wA in training set T0287 18 :KKEKLIESL 1m0wA 10 :QLNELIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16420 # 1yiiA.18.32 read from T0287.t04.many.frag # found chain 1yiiA in training set T0287 18 :KKEKLIESL 1yiiA 34 :DEETILKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16421 # 1dc1A.18.89 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 18 :KKEKLIESL 1dc1A 90 :DKKESINNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16422 # 1on2A.19.38 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 19 :KEKLIESLQ 1on2A 39 :VTKMVQKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16423 # 1uw4B.19.20 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 19 :KEKLIESLQ 1uw4B 788 :TEKVLRQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16424 # 1w8iA.19.59 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 19 :KEKLIESLQ 1w8iA 60 :ADKFLEGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16425 # 2d28C.19.6 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 19 :KEKLIESLQ 2d28C 7 :ETRIVEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16426 # 1r7jA.19.36 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 19 :KEKLIESLQ 1r7jA 37 :TGRYIKMLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16427 # 1r6xA.19.18 read from T0287.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)Q27 (1r6xA)Q28 because G (3-10) conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1r6xA 20 :KNELLSEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16428 # 1lvaA.19.33 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 19 :KEKLIESLQ 1lvaA 410 :TRKLLQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16429 # 1szhA.19.23 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 19 :KEKLIESLQ 1szhA 38 :QECCIEIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16430 # 1aa7A.19.20 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 19 :KEKLIESLQ 1aa7A 21 :KAEIAQRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16431 # 1jr2A.19.142 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 19 :KEKLIESLQ 1jr2A 122 :AEKLAEYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16432 # 1ci4A.19.55 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 19 :KEKLIESLQ 1ci4A 56 :EDLFREWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16433 # 2ahrA.19.171 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 19 :KEKLIESLQ 2ahrA 169 :IYLFIEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16434 # 1i58A.19.104 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 19 :KEKLIESLQ 1i58A 456 :KEKIIRKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16435 # 1sflA.19.113 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 19 :KEKLIESLQ 1sflA 114 :HQRIITHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16436 # 1jkeA.19.41 read from T0287.t04.many.frag # found chain 1jkeA in training set T0287 19 :KEKLIESLQ 1jkeA 42 :ANRLCERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16437 # 2fnuA.19.297 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 19 :KEKLIESLQ 2fnuA 298 :KKLILESLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=16438 # 1usyA.19.146 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 19 :KEKLIESLQ 1usyA 147 :HEKVLNLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=16439 # 1r71A.19.23 read from T0287.t04.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1r71A)A140 T0287 20 :EKLIESLQ 1r71A 141 :DQVIENLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16440 # 1ctf.19.18 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 19 :KEKLIESLQ 1ctf 65 :KVAVIKAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16441 # 1otvA.19.203 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 19 :KEKLIESLQ 1otvA 204 :QNRMLEILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16442 # 1yovA.19.242 read from T0287.t04.many.frag # found chain 1yovA in template set T0287 19 :KEKLIESLQ 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16443 # 1dc1A.19.90 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 19 :KEKLIESLQ 1dc1A 91 :KKESINNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16444 # 1wu7A.19.194 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 19 :KEKLIESLQ 1wu7A 195 :REEFVDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16445 # 1q52A.19.273 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 19 :KEKLIESLQ 1q52A 274 :GQQLFAGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16446 # 1s9rA.19.90 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 19 :KEKLIESLQ 1s9rA 91 :KDKLIEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16447 # 1p4xA.19.66 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 19 :KEKLIESLQ 1p4xA 67 :LVQHIKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16448 # 1qkrA.19.65 read from T0287.t04.many.frag # found chain 1qkrA in training set T0287 19 :KEKLIESLQ 1qkrA 944 :KRALIQCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16449 # 2b0tA.19.90 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 19 :KEKLIESLQ 2b0tA 91 :LKAAIKELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16450 # 1kxu.19.145 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 19 :KEKLIESLQ 1kxu 136 :QEKALEQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16451 # 1ymtA.19.25 read from T0287.t04.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)Q27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ymtA)Q259 T0287 19 :KEKLIESL 1ymtA 242 :RARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16452 # 1on2A.20.39 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 20 :EKLIESLQE 1on2A 40 :TKMVQKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16453 # 1uw4B.20.21 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 20 :EKLIESLQE 1uw4B 789 :EKVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16454 # 2d28C.20.7 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 20 :EKLIESLQE 2d28C 8 :TRIVEALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16455 # 1w8iA.20.60 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 20 :EKLIESLQE 1w8iA 61 :DKFLEGFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16456 # 1r7jA.20.37 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 20 :EKLIESLQE 1r7jA 38 :GRYIKMLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16457 # 2ahrA.20.172 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 20 :EKLIESLQE 2ahrA 170 :YLFIEALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16458 # 1i58A.20.105 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 20 :EKLIESLQE 1i58A 457 :EKIIRKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16459 # 1lvaA.20.34 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 20 :EKLIESLQE 1lvaA 411 :RKLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16460 # 1sflA.20.114 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 20 :EKLIESLQE 1sflA 115 :QRIITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16461 # 1r6xA.20.19 read from T0287.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)E28 (1r6xA)S29 because P (beta_P) conformation "forbidden" or filtered. T0287 20 :EKLIESLQ 1r6xA 21 :NELLSEAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16462 # 1r71A.20.24 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 20 :EKLIESLQE 1r71A 141 :DQVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16463 # 1ci4A.20.56 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 20 :EKLIESLQE 1ci4A 57 :DLFREWLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16464 # 1szhA.20.24 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 20 :EKLIESLQE 1szhA 39 :ECCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16465 # 1aa7A.20.21 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 20 :EKLIESLQE 1aa7A 22 :AEIAQRLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=16466 # 1dc1A.20.91 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 20 :EKLIESLQE 1dc1A 92 :KESINNLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16467 # 2fnuA.20.298 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 20 :EKLIESLQE 2fnuA 299 :KLILESLHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16468 # 1jr2A.20.143 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 20 :EKLIESLQE 1jr2A 123 :EKLAEYICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16469 # 1jkeA.20.42 read from T0287.t04.many.frag # found chain 1jkeA in training set T0287 20 :EKLIESLQE 1jkeA 43 :NRLCERVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16470 # 1s9rA.20.91 read from T0287.t04.many.frag # found chain 1s9rA in training set T0287 20 :EKLIESLQE 1s9rA 92 :DKLIEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16471 # 1ctf.20.19 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 20 :EKLIESLQE 1ctf 66 :VAVIKAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16472 # 2b0tA.20.91 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 20 :EKLIESLQE 2b0tA 92 :KAAIKELQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16473 # 1p4xA.20.67 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 20 :EKLIESLQE 1p4xA 68 :VQHIKVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16474 # 1kxu.20.146 read from T0287.t04.many.frag # found chain 1kxu in template set T0287 20 :EKLIESLQE 1kxu 137 :EKALEQILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16475 # 1wu7A.20.195 read from T0287.t04.many.frag # found chain 1wu7A in template set T0287 20 :EKLIESLQE 1wu7A 196 :EEFVDQLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16476 # 1q52A.20.274 read from T0287.t04.many.frag # found chain 1q52A in training set T0287 20 :EKLIESLQE 1q52A 275 :QQLFAGEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16477 # 1xg8A.20.66 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 20 :EKLIESLQE 1xg8A 58 :LQFIERIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16478 # 1oi7A.20.258 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 20 :EKLIESLQE 1oi7A 259 :ESKLRAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16479 # 1qvzA.20.81 read from T0287.t04.many.frag # found chain 1qvzA in template set Warning: unaligning (T0287)Q27 (1qvzA)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 20 :EKLIESL 1qvzA 82 :NKTLAKI T0287 28 :E 1qvzA 90 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=16481 # 1otvA.20.204 read from T0287.t04.many.frag # found chain 1otvA in template set T0287 20 :EKLIESLQE 1otvA 205 :NRMLEILQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16482 # 1pu6A.20.48 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 20 :EKLIESLQE 1pu6A 49 :LKSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16483 # 2d28C.21.8 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 21 :KLIESLQEN 2d28C 9 :RIVEALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16484 # 1on2A.21.40 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 21 :KLIESLQEN 1on2A 41 :KMVQKLDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16485 # 1uw4B.21.22 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 21 :KLIESLQEN 1uw4B 790 :KVLRQMRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16486 # 1w8iA.21.61 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 21 :KLIESLQEN 1w8iA 62 :KFLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=16487 # 1r7jA.21.38 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 21 :KLIESLQEN 1r7jA 39 :RYIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16488 # 1r71A.21.25 read from T0287.t04.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N29 (1r71A)N150 because L (left) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1r71A 142 :QVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16489 # 1i58A.21.106 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 21 :KLIESLQEN 1i58A 458 :KIIRKAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16490 # 1sflA.21.115 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 21 :KLIESLQEN 1sflA 116 :RIITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16491 # 2ahrA.21.173 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 21 :KLIESLQEN 2ahrA 171 :LFIEALAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16492 # 1aa7A.21.22 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 21 :KLIESLQEN 1aa7A 23 :EIAQRLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16493 # 2fnuA.21.299 read from T0287.t04.many.frag # found chain 2fnuA in template set Warning: unaligning (T0287)N29 (2fnuA)R308 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 2fnuA 300 :LILESLHK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16494 # 1szhA.21.25 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 21 :KLIESLQEN 1szhA 40 :CCIEIMKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16495 # 1ci4A.21.57 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 21 :KLIESLQEN 1ci4A 58 :LFREWLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16496 # 1r6xA.21.20 read from T0287.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)E28 (1r6xA)S29 because P (beta_P) conformation "forbidden" or filtered. T0287 21 :KLIESLQ 1r6xA 22 :ELLSEAQ T0287 29 :N 1r6xA 30 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=16498 # 1pu6A.21.49 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 21 :KLIESLQEN 1pu6A 50 :KSLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16499 # 1jkeA.21.43 read from T0287.t04.many.frag # found chain 1jkeA in training set T0287 21 :KLIESLQEN 1jkeA 44 :RLCERVLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16500 # 1sd4A.21.28 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 21 :KLIESLQEN 1sd4A 29 :EIVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16501 # 1jr2A.21.144 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 21 :KLIESLQEN 1jr2A 124 :KLAEYICSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16502 # 1ctf.21.20 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 21 :KLIESLQEN 1ctf 67 :AVIKAVRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16503 # 1yj7A.21.48 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 21 :KLIESLQEN 1yj7A 68 :RAITILNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16504 # 2b0tA.21.92 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 21 :KLIESLQEN 2b0tA 93 :AAIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16505 # 1lvaA.21.35 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 21 :KLIESLQEN 1lvaA 412 :KLLQSMAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16506 # 1oi7A.21.259 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 21 :KLIESLQEN 1oi7A 260 :SKLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16507 # 1dc1A.21.92 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 21 :KLIESLQEN 1dc1A 93 :ESINNLIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16508 # 2bwbA.21.8 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 21 :KLIESLQEN 2bwbA 334 :HQLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=16509 # 1qvzA.21.82 read from T0287.t04.many.frag # found chain 1qvzA in template set T0287 21 :KLIESLQEN 1qvzA 83 :KTLAKIKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16510 # 1l0bA.21.75 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1l0bA 1664 :WVIKSIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16511 # 2tpt.21.5 read from T0287.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 2tpt 6 :EIIRKKRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=16512 # 1uj8A.21.41 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 21 :KLIESLQEN 1uj8A 42 :DMHQWICDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16513 # 1jalA.21.141 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 21 :KLIESLQEN 1jalA 142 :RAIQRLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16514 # 2d28C.22.9 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 22 :LIESLQENE 2d28C 10 :IVEALLERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16515 # 1on2A.22.41 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 22 :LIESLQENE 1on2A 42 :MVQKLDKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16516 # 1uw4B.22.23 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 22 :LIESLQENE 1uw4B 791 :VLRQMRKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16517 # 1i58A.22.107 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 22 :LIESLQENE 1i58A 459 :IIRKAIEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16518 # 1yj7A.22.49 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1yj7A 69 :AITILNNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=16519 # 1w8iA.22.62 read from T0287.t04.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1w8iA 63 :FLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 1 total=16520 # 1l0bA.22.76 read from T0287.t04.many.frag # found chain 1l0bA in template set T0287 22 :LIESLQENE 1l0bA 1665 :VIKSIQERK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16521 # 1r71A.22.26 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 22 :LIESLQENE 1r71A 143 :VIENLQRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16522 # 1r7jA.22.39 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 22 :LIESLQENE 1r7jA 40 :YIKMLMDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16523 # 1sd4A.22.29 read from T0287.t04.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1sd4A 30 :IVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16524 # 1sflA.22.116 read from T0287.t04.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)E30 (1sflA)N125 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1sflA 117 :IITHLQQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=16525 # 2ahrA.22.174 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 22 :LIESLQENE 2ahrA 172 :FIEALAKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16526 # 2fnuA.22.300 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 22 :LIESLQENE 2fnuA 301 :ILESLHKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16527 # 1oi7A.22.260 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1oi7A 261 :KLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16528 # 1pu6A.22.50 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1pu6A 51 :SLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16529 # 1ctf.22.21 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 22 :LIESLQENE 1ctf 68 :VIKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16530 # 2b0tA.22.93 read from T0287.t04.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)E30 (2b0tA)G102 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2b0tA 94 :AIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16531 # 1szhA.22.26 read from T0287.t04.many.frag # found chain 1szhA in training set T0287 22 :LIESLQENE 1szhA 41 :CIEIMKFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16532 # 1ci4A.22.58 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 22 :LIESLQENE 1ci4A 59 :FREWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16533 # 1r6xA.22.21 read from T0287.t04.many.frag # found chain 1r6xA in training set T0287 22 :LIESLQENE 1r6xA 23 :LLSEAQSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16534 # 1aa7A.22.23 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 22 :LIESLQENE 1aa7A 24 :IAQRLEDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16535 # 2tpt.22.6 read from T0287.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQE 2tpt 7 :IIRKKRD T0287 30 :E 2tpt 15 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=16537 # 1jr2A.22.145 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 22 :LIESLQENE 1jr2A 125 :LAEYICSRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16538 # 1nuuA.22.222 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1nuuA 223 :VITYIKDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=16539 # 2cz1A.22.24 read from T0287.t04.many.frag # found chain 2cz1A in template set T0287 22 :LIESLQENE 2cz1A 25 :LFRALDGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16540 # 2bwbA.22.9 read from T0287.t04.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2bwbA 335 :QLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 1 total=16541 # 1lvaA.22.36 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 22 :LIESLQENE 1lvaA 413 :LLQSMAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16542 # 1uj8A.22.42 read from T0287.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1uj8A 43 :MHQWICD T0287 30 :E 1uj8A 51 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=16544 # 1jalA.22.142 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 22 :LIESLQENE 1jalA 143 :AIQRLQKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16545 # 1dc1A.22.93 read from T0287.t04.many.frag # found chain 1dc1A in training set T0287 22 :LIESLQENE 1dc1A 94 :SINNLIENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16546 # 2d28C.23.10 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2d28C 11 :VEALLER T0287 31 :L 2d28C 19 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=16548 # 1uw4B.23.24 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 23 :IESLQENEL 1uw4B 792 :LRQMRKLPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=16549 # 1on2A.23.42 read from T0287.t04.many.frag # found chain 1on2A in training set T0287 23 :IESLQENEL 1on2A 43 :VQKLDKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16550 # 1i58A.23.108 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)N29 (1i58A)K466 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1i58A 460 :IRKAIE T0287 31 :L 1i58A 468 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=16552 # 1yj7A.23.50 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1yj7A 70 :ITILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=16554 # 1l0bA.23.77 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1l0bA 1666 :IKSIQE T0287 30 :EL 1l0bA 1673 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16556 # 1w8iA.23.63 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 23 :IESLQENEL 1w8iA 64 :LEGFVESGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16557 # 1r71A.23.27 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 23 :IESLQENEL 1r71A 144 :IENLQRNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16558 # 1sd4A.23.30 read from T0287.t04.many.frag # found chain 1sd4A in template set T0287 23 :IESLQENEL 1sd4A 31 :VVEIQKYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16559 # 1nuuA.23.223 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1nuuA 224 :ITYIKDH T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=16561 # 1pu6A.23.51 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 23 :IESLQENEL 1pu6A 52 :LENLKNAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16562 # 1oi7A.23.261 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 23 :IESLQENEL 1oi7A 262 :LRAFAEAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16563 # 2ahrA.23.175 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 23 :IESLQENEL 2ahrA 173 :IEALAKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16564 # 1uj8A.23.43 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 23 :IESLQENEL 1uj8A 44 :HQWICDLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=16565 # 1ctf.23.22 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 23 :IESLQENEL 1ctf 69 :IKAVRGATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16566 # 2bwbA.23.10 read from T0287.t04.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2bwbA 336 :LRQLNDM T0287 31 :L 2bwbA 344 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=16568 # 1r7jA.23.40 read from T0287.t04.many.frag # found chain 1r7jA in training set Warning: unaligning (T0287)E30 (1r7jA)E48 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1r7jA 41 :IKMLMDL T0287 31 :L 1r7jA 49 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=16570 # 2cz1A.23.25 read from T0287.t04.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2cz1A 26 :FRALDGK T0287 31 :L 2cz1A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=16572 # 1sflA.23.117 read from T0287.t04.many.frag # found chain 1sflA in template set T0287 23 :IESLQENEL 1sflA 118 :ITHLQQYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16573 # 1ci4A.23.59 read from T0287.t04.many.frag # found chain 1ci4A in template set T0287 23 :IESLQENEL 1ci4A 60 :REWLKDTCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16574 # 1jalA.23.143 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 23 :IESLQENEL 1jalA 144 :IQRLQKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16575 # 2fnuA.23.301 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 23 :IESLQENEL 2fnuA 302 :LESLHKRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16576 # 1aa7A.23.24 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 23 :IESLQENEL 1aa7A 25 :AQRLEDVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16577 # 2hddA.23.18 read from T0287.t04.many.frag # found chain 2hddA in template set T0287 23 :IESLQENEL 2hddA 17 :KREFNENRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16578 # 2tpt.23.7 read from T0287.t04.many.frag # found chain 2tpt in template set T0287 23 :IESLQENEL 2tpt 8 :IRKKRDGHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16579 # 1xg8A.23.69 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 23 :IESLQENEL 1xg8A 61 :IERIEQDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16580 # 2ak3A.23.55 read from T0287.t04.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQE 2ak3A 55 :KTFIDQ T0287 30 :EL 2ak3A 62 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16582 # 1h5uA.23.741 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 23 :IESLQENEL 1h5uA 742 :IEQLSSGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16583 # 1k3xA.23.139 read from T0287.t04.many.frag # found chain 1k3xA in training set T0287 23 :IESLQENEL 1k3xA 140 :KERLLSPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16584 # 1jkeA.23.45 read from T0287.t04.many.frag # found chain 1jkeA in training set Warning: unaligning (T0287)N29 (1jkeA)Y52 because P (beta_P) conformation "forbidden" or filtered. T0287 23 :IESLQE 1jkeA 46 :CERVLG T0287 30 :EL 1jkeA 53 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16586 # 2d28C.24.11 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)N29 (2d28C)R17 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQE 2d28C 12 :EALLE T0287 31 :LL 2d28C 19 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16588 # 1i58A.24.109 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 24 :ESLQEN 1i58A 461 :RKAIEK T0287 31 :L 1i58A 468 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=16590 # 1uw4B.24.25 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 24 :ESLQENELL 1uw4B 793 :RQMRKLPWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16591 # 1yj7A.24.51 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1yj7A 71 :TILNNN T0287 31 :L 1yj7A 78 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=16593 # 1on2A.24.43 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1on2A 44 :QKLDKD T0287 31 :LL 1on2A 51 :YL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16595 # 1l0bA.24.78 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 1l0bA 1667 :KSIQE T0287 30 :ELL 1l0bA 1673 :KLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16597 # 1oi7A.24.262 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)N29 (1oi7A)A268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 1oi7A 263 :RAFAE T0287 31 :LL 1oi7A 270 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16599 # 1pu6A.24.52 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. T0287 24 :ESLQE 1pu6A 53 :ENLKN T0287 30 :ELL 1pu6A 59 :FIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16601 # 1nuuA.24.224 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1nuuA 225 :TYIKDH T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=16603 # 2bwbA.24.11 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 24 :ESLQENELL 2bwbA 337 :RQLNDMGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16604 # 1r71A.24.28 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 24 :ESLQENELL 1r71A 145 :ENLQRNELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16605 # 1whsA.24.196 read from T0287.t04.many.frag # found chain 1whsA in template set T0287 24 :ESLQENELL 1whsA 190 :EFWWNHGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16606 # 1uj8A.24.44 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 24 :ESLQENELL 1uj8A 45 :QWICDLEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16607 # 1w8iA.24.64 read from T0287.t04.many.frag # found chain 1w8iA in template set T0287 24 :ESLQENELL 1w8iA 65 :EGFVESGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16608 # 1r7jA.24.41 read from T0287.t04.many.frag # found chain 1r7jA in training set Warning: unaligning (T0287)E30 (1r7jA)E48 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1r7jA 42 :KMLMDL T0287 31 :LL 1r7jA 49 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=16610 # 1u20A.24.186 read from T0287.t04.many.frag # found chain 1u20A in template set T0287 24 :ESLQENELL 1u20A 187 :YALRSLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16611 # 1ctf.24.23 read from T0287.t04.many.frag # found chain 1ctf in training set T0287 24 :ESLQENELL 1ctf 70 :KAVRGATGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16612 # 1sd4A.24.31 read from T0287.t04.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1sd4A)V40 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1sd4A 32 :VEIQKY T0287 31 :L 1sd4A 39 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=16614 # 1jalA.24.144 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 24 :ESLQENELL 1jalA 145 :QRLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16615 # 2ak3A.24.56 read from T0287.t04.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2ak3A 56 :TFIDQG T0287 31 :LL 2ak3A 63 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16617 # 2cz1A.24.26 read from T0287.t04.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2cz1A 27 :RALDGK T0287 31 :LL 2cz1A 34 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16619 # 2fnuA.24.302 read from T0287.t04.many.frag # found chain 2fnuA in template set T0287 24 :ESLQENELL 2fnuA 303 :ESLHKRGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16620 # 1ig0A.24.106 read from T0287.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0287)E30 (1ig0A)K113 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1ig0A 107 :KYYRKN T0287 31 :LL 1ig0A 114 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16622 # 2tpt.24.8 read from T0287.t04.many.frag # found chain 2tpt in template set T0287 24 :ESLQENELL 2tpt 9 :RKKRDGHAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16623 # 1fiuA.24.13 read from T0287.t04.many.frag # found chain 1fiuA in training set T0287 24 :ESLQENELL 1fiuA 14 :KKLLDGNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16624 # 2ahrA.24.176 read from T0287.t04.many.frag # found chain 2ahrA in template set T0287 24 :ESLQENELL 2ahrA 174 :EALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16625 # 1h5uA.24.742 read from T0287.t04.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)L32 (1h5uA)S751 because D (zeta) conformation "forbidden" or filtered. T0287 24 :ESLQENEL 1h5uA 743 :EQLSSGFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=16626 # 1s7zA.24.20 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1s7zA 20 :ENIRYD T0287 31 :LL 1s7zA 27 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16628 # 1qvzA.24.85 read from T0287.t04.many.frag # found chain 1qvzA in template set Warning: unaligning (T0287)S25 (1qvzA)K87 because G (3-10) conformation "forbidden" or filtered. T0287 24 :E 1qvzA 86 :A T0287 26 :LQENELL 1qvzA 88 :IKTPKEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16630 # 1ci4A.24.60 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQENE 1ci4A 61 :EWLKDTC T0287 32 :L 1ci4A 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=16632 # 2d28C.25.12 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)N33 (2d28C)K21 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQENELL 2d28C 13 :ALLERRRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16633 # 1i58A.25.110 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 1i58A 462 :KAIEK T0287 31 :LLN 1i58A 468 :LID Number of specific fragments extracted= 2 number of extra gaps= 1 total=16635 # 1whsA.25.197 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1whsA)S199 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 1whsA 191 :FWWN T0287 31 :LL 1whsA 197 :IV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16637 # 1nuuA.25.225 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1nuuA 226 :YIKDH T0287 31 :L 1nuuA 232 :L T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=16640 # 1oi7A.25.263 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 25 :SLQENELLN 1oi7A 264 :AFAEAGIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16641 # 1pu6A.25.53 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQE 1pu6A 54 :NLKN T0287 30 :ELL 1pu6A 59 :FIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16643 # 1yj7A.25.52 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 25 :SLQENEL 1yj7A 72 :ILNNNGF T0287 33 :N 1yj7A 80 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16645 # 1u20A.25.187 read from T0287.t04.many.frag # found chain 1u20A in template set T0287 25 :SLQENELLN 1u20A 188 :ALRSLKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16646 # 2bwbA.25.12 read from T0287.t04.many.frag # found chain 2bwbA in template set T0287 25 :SLQENELLN 2bwbA 338 :QLNDMGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16647 # 1l0bA.25.79 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1l0bA)K1673 because E (beta_S) conformation "forbidden" or filtered. T0287 25 :SLQE 1l0bA 1668 :SIQE T0287 31 :LLN 1l0bA 1674 :LLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16649 # 1uw4B.25.26 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 1uw4B 794 :QMRK T0287 30 :ELLN 1uw4B 799 :PWQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16651 # 1jalA.25.145 read from T0287.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENELL 1jalA 146 :RLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=16652 # 2ahrA.25.177 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 T0287 25 :SLQENELL 2ahrA 175 :ALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16653 # 1fzcA.25.18 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 25 :SLQENELLN 1fzcA 129 :KVQHIQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16654 # 1on2A.25.44 read from T0287.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N33 (1on2A)I53 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENELL 1on2A 45 :KLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16655 # 2ak3A.25.57 read from T0287.t04.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQE 2ak3A 57 :FIDQ T0287 30 :ELLN 2ak3A 62 :KLIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16657 # 1s7zA.25.21 read from T0287.t04.many.frag # found chain 1s7zA in template set T0287 25 :SLQENELLN 1s7zA 21 :NIRYDDIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16658 # 1hynP.25.137 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 25 :SLQENELLN 1hynP 138 :RFIFEDQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16659 # 1uj8A.25.45 read from T0287.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQE 1uj8A 46 :WICD T0287 30 :ELLN 1uj8A 51 :EDFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16661 # 1fiuA.25.14 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQEN 1fiuA 15 :KLLDG T0287 31 :LL 1fiuA 21 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16663 # 1h5uA.25.743 read from T0287.t04.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 1h5uA 744 :QLSS T0287 30 :ELLN 1h5uA 749 :FFSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16665 # 2ao9A.25.33 read from T0287.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 25 :SLQENEL 2ao9A 34 :LLVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16666 # 1ctf.25.24 read from T0287.t04.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENE 1ctf 71 :AVRGAT T0287 32 :LN 1ctf 78 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16668 # 1vjrA.25.68 read from T0287.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0287)E30 (1vjrA)G62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L31 (1vjrA)V63 because D (zeta) conformation "forbidden" or filtered. T0287 25 :SLQEN 1vjrA 57 :KLRNM T0287 32 :LN 1vjrA 64 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16670 # 1go3F.25.39 read from T0287.t04.many.frag # found chain 1go3F in training set T0287 25 :SLQENELLN 1go3F 40 :YLQKFAKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16671 # 2hddA.25.20 read from T0287.t04.many.frag # found chain 2hddA in template set T0287 25 :SLQENELLN 2hddA 19 :EFNENRYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16672 # 2tpt.25.9 read from T0287.t04.many.frag # found chain 2tpt in template set T0287 25 :SLQENELLN 2tpt 10 :KKRDGHALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16673 # 2cz1A.25.27 read from T0287.t04.many.frag # found chain 2cz1A in template set T0287 25 :SLQENELLN 2cz1A 28 :ALDGKGLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16674 # 1cy5A.25.27 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 1cy5A 28 :HMISD T0287 31 :LLN 1cy5A 34 :FLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16676 # 2b8nA.25.227 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)N29 (2b8nA)Y220 because G (3-10) conformation "forbidden" or filtered. T0287 25 :SLQE 2b8nA 216 :VLEK T0287 30 :ELLN 2b8nA 221 :GIET Number of specific fragments extracted= 2 number of extra gaps= 1 total=16678 # 1whsA.26.198 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 26 :LQE 1whsA 192 :WWN T0287 31 :LLNT 1whsA 197 :IVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16680 # 1i58A.26.111 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 26 :LQENELLNT 1i58A 463 :AIEKGLIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16681 # 2d28C.26.13 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 2d28C 14 :LLER T0287 31 :LLNT 2d28C 19 :RLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16683 # 1u20A.26.188 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)N29 (1u20A)L192 because G (3-10) conformation "forbidden" or filtered. T0287 26 :LQE 1u20A 189 :LRS T0287 30 :ELLNT 1u20A 193 :KLLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16685 # 1pu6A.26.54 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQEN 1pu6A 55 :LKNA T0287 31 :LL 1pu6A 60 :IL T0287 34 :T 1pu6A 63 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=16688 # 1hynP.26.138 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 1hynP 139 :FIFE T0287 31 :LL 1hynP 144 :QI T0287 34 :T 1hynP 147 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=16691 # 1nuuA.26.226 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 26 :LQEN 1nuuA 227 :IKDH T0287 31 :L 1nuuA 232 :L T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=16694 # 1fiuA.26.15 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1fiuA 16 :LLDG T0287 31 :LLNT 1fiuA 21 :ILAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16696 # 1cy5A.26.28 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1cy5A 29 :MISD T0287 31 :LLNT 1cy5A 34 :FLTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16698 # 1l0bA.26.80 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)Q27 (1l0bA)Q1670 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1l0bA)K1673 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1l0bA)S1676 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :L 1l0bA 1669 :I T0287 28 :E 1l0bA 1671 :E T0287 31 :LL 1l0bA 1674 :LL T0287 34 :T 1l0bA 1677 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=16702 # 2ahrA.26.178 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 26 :LQENELL 2ahrA 176 :LAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16703 # 1yj7A.26.53 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 26 :LQENEL 1yj7A 73 :LNNNGF T0287 33 :NT 1yj7A 80 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16705 # 1oi7A.26.264 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 26 :LQENELLNT 1oi7A 265 :FAEAGIPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16706 # 1fzcA.26.19 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 26 :LQENELLNT 1fzcA 130 :VQHIQLLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16707 # 2ak3A.26.58 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 26 :LQENELLNT 2ak3A 58 :IDQGKLIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16708 # 1jalA.26.146 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 26 :LQENELLNT 1jalA 147 :LQKRAKGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16709 # 1vfgA.26.177 read from T0287.t04.many.frag # found chain 1vfgA in template set T0287 26 :LQENELLNT 1vfgA 178 :AVNLGLLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16710 # 2bwbA.26.13 read from T0287.t04.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 2bwbA 339 :LNDM T0287 31 :LLNT 2bwbA 344 :FFDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16712 # 2etjA.26.211 read from T0287.t04.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 2etjA 200 :FFEK T0287 31 :LLNT 2etjA 205 :LISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16714 # 1uj8A.26.46 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 26 :LQENELLNT 1uj8A 47 :ICDLEDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16715 # 2ao9A.26.34 read from T0287.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 26 :LQENEL 2ao9A 35 :LVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16716 # 1s7zA.26.22 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1s7zA)D29 because E (beta_S) conformation "forbidden" or filtered. T0287 26 :LQEN 1s7zA 22 :IRYD T0287 31 :LL 1s7zA 27 :IR T0287 34 :T 1s7zA 30 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=16719 # 1uw4B.26.27 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQE 1uw4B 795 :MRK T0287 30 :ELLNT 1uw4B 799 :PWQDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16721 # 1jg1A.26.27 read from T0287.t04.many.frag # found chain 1jg1A in training set T0287 26 :LQENELLNT 1jg1A 28 :LKAEGIIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16722 # 2tpt.26.10 read from T0287.t04.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2tpt)S18 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQE 2tpt 11 :KRD T0287 30 :ELL 2tpt 15 :HAL T0287 34 :T 2tpt 19 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=16725 # 1go3F.26.40 read from T0287.t04.many.frag # found chain 1go3F in training set T0287 26 :LQENELLNT 1go3F 41 :LQKFAKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16726 # 1gqeA.26.40 read from T0287.t04.many.frag # found chain 1gqeA in template set T0287 26 :LQENELLNT 1gqeA 41 :LEQPDVWNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16727 # 1ctf.26.25 read from T0287.t04.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1ctf)G79 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENE 1ctf 72 :VRGAT T0287 32 :L 1ctf 78 :L T0287 34 :T 1ctf 80 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=16730 # 2d3dA.26.52 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENELL 2d3dA 488 :LEKKGVL T0287 34 :T 2d3dA 496 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=16732 # 1ci4A.26.62 read from T0287.t04.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1ci4A)N70 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQENE 1ci4A 63 :LKDTC T0287 32 :L 1ci4A 69 :A T0287 34 :T 1ci4A 71 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=16735 # 1whsA.27.199 read from T0287.t04.many.frag # found chain 1whsA in template set T0287 27 :QENELLNTD 1whsA 193 :WNHGIVSDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16736 # 1hynP.27.139 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 1hynP 140 :IFE T0287 31 :LL 1hynP 144 :QI T0287 34 :TD 1hynP 147 :PQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=16739 # 1u20A.27.189 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 1u20A 190 :RSL T0287 31 :LL 1u20A 194 :LL T0287 34 :TD 1u20A 197 :ED Number of specific fragments extracted= 3 number of extra gaps= 2 total=16742 # 1pu6A.27.55 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QEN 1pu6A 56 :KNA T0287 31 :LL 1pu6A 60 :IL T0287 34 :TD 1pu6A 63 :ND Number of specific fragments extracted= 3 number of extra gaps= 2 total=16745 # 1i58A.27.112 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QENEL 1i58A 464 :IEKGL T0287 33 :NTD 1i58A 470 :DES Number of specific fragments extracted= 2 number of extra gaps= 1 total=16747 # 1cy5A.27.29 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1cy5A 30 :ISD T0287 31 :LLNTD 1cy5A 34 :FLTIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16749 # 2d28C.27.14 read from T0287.t04.many.frag # found chain 2d28C in template set T0287 27 :QENELLNTD 2d28C 15 :LERRRLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16750 # 1u3eM.27.100 read from T0287.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u3eM 101 :MSR T0287 31 :LLNTD 1u3eM 105 :TLNVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16752 # 1nuuA.27.227 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)N29 (1nuuA)H230 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1nuuA)T234 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 27 :QE 1nuuA 228 :KD T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=16754 # 2etjA.27.212 read from T0287.t04.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2etjA)S207 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 2etjA 201 :FEK T0287 31 :LL 2etjA 205 :LI T0287 34 :TD 2etjA 208 :EN Number of specific fragments extracted= 3 number of extra gaps= 2 total=16757 # 1fzcA.27.20 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 27 :QENELLNTD 1fzcA 131 :QHIQLLQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16758 # 1fiuA.27.16 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QEN 1fiuA 17 :LDG T0287 31 :LL 1fiuA 21 :IL T0287 34 :TD 1fiuA 24 :TN Number of specific fragments extracted= 3 number of extra gaps= 2 total=16761 # 2d3dA.27.53 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 2d3dA 489 :EKK T0287 31 :LLNTD 2d3dA 493 :VLALG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16763 # 1kicA.27.102 read from T0287.t04.many.frag # found chain 1kicA in training set T0287 27 :QENELLNTD 1kicA 91 :DDMPILNIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16764 # 2ahrA.27.179 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 27 :QENELL 2ahrA 177 :AKAGVK T0287 35 :D 2ahrA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=16766 # 1l0bA.27.81 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QE 1l0bA 1670 :QE T0287 30 :ELLNTD 1l0bA 1673 :KLLSVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16768 # 2ak3A.27.59 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 27 :QENELLNTD 2ak3A 59 :DQGKLIPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16769 # 1vfgA.27.178 read from T0287.t04.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1vfgA 179 :VNL T0287 31 :LLNTD 1vfgA 183 :LLKEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16771 # 1oi7A.27.265 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1oi7A)V272 because E (beta_S) conformation "forbidden" or filtered. T0287 27 :QEN 1oi7A 266 :AEA T0287 31 :LL 1oi7A 270 :IP T0287 34 :TD 1oi7A 273 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16774 # 1qqfA.27.22 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 27 :QENELL 1qqfA 1032 :EQWEKF T0287 35 :D 1qqfA 1040 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=16776 # 1utg.27.42 read from T0287.t04.many.frag # found chain 1utg in training set T0287 27 :QENELLNTD 1utg 43 :KVLDSLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16777 # 1uj8A.27.47 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 27 :QENELLNTD 1uj8A 48 :CDLEDFDDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16778 # 1qvzA.27.88 read from T0287.t04.many.frag # found chain 1qvzA in template set Warning: unaligning (T0287)N33 (1qvzA)N95 because D (zeta) conformation "forbidden" or filtered. T0287 27 :QENELL 1qvzA 89 :KTPKEV T0287 34 :TD 1qvzA 96 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16780 # 1jalA.27.147 read from T0287.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QENELL 1jalA 148 :QKRAKG T0287 34 :TD 1jalA 155 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16782 # 1s7zA.27.23 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1s7zA)D29 because E (beta_S) conformation "forbidden" or filtered. T0287 27 :QEN 1s7zA 23 :RYD T0287 31 :LL 1s7zA 27 :IR T0287 34 :TD 1s7zA 30 :TD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16785 # 1jg1A.27.28 read from T0287.t04.many.frag # found chain 1jg1A in training set T0287 27 :QENELLNTD 1jg1A 29 :KAEGIIRSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16786 # 1m40A.27.168 read from T0287.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 27 :QENELLN 1m40A 194 :LTGELLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16787 # 2ao9A.27.35 read from T0287.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 27 :QENEL 2ao9A 36 :VENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16788 # 1gqeA.27.41 read from T0287.t04.many.frag # found chain 1gqeA in template set Warning: unaligning (T0287)E28 (1gqeA)Q43 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :Q 1gqeA 42 :E T0287 29 :NELLNTD 1gqeA 44 :PDVWNEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16790 # 1k3yA.27.105 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 T0287 27 :QENELLNT 1k3yA 107 :LLLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=16791 # 1whsA.28.200 read from T0287.t04.many.frag # found chain 1whsA in template set T0287 28 :ENELLNTDE 1whsA 194 :NHGIVSDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16792 # 1u20A.28.190 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1u20A 191 :SL T0287 31 :LLNTDE 1u20A 194 :LLREDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16794 # 1hynP.28.140 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 1hynP 141 :FE T0287 31 :LL 1hynP 144 :QI T0287 34 :TDE 1hynP 147 :PQD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16797 # 1pu6A.28.56 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :ENELL 1pu6A 57 :NAFIL T0287 34 :TDE 1pu6A 63 :NDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16799 # 1u3eM.28.101 read from T0287.t04.many.frag # found chain 1u3eM in template set T0287 28 :ENELLNTDE 1u3eM 102 :SRGTLNVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16800 # 2d3dA.28.54 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 28 :ENELLNTDE 2d3dA 490 :KKGVLALGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16801 # 1i58A.28.113 read from T0287.t04.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :ENEL 1i58A 465 :EKGL T0287 33 :NTDE 1i58A 470 :DESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16803 # 1k3yA.28.106 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 28 :ENELL 1k3yA 108 :LLPVC T0287 34 :T 1k3yA 114 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=16805 # 1cy5A.28.30 read from T0287.t04.many.frag # found chain 1cy5A in training set T0287 28 :ENELLNTDE 1cy5A 31 :SDGFLTISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16806 # 1kicA.28.103 read from T0287.t04.many.frag # found chain 1kicA in training set T0287 28 :ENELLNTDE 1kicA 92 :DMPILNIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16807 # 1qqfA.28.23 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :DE 1qqfA 1040 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16809 # 2etjA.28.213 read from T0287.t04.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 2etjA 202 :EK T0287 31 :LLNTDE 2etjA 205 :LISENR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16811 # 1fzcA.28.21 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 28 :ENELLNTDE 1fzcA 132 :HIQLLQKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16812 # 2ahrA.28.180 read from T0287.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 Warning: unaligning (T0287)D35 (2ahrA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 28 :ENELL 2ahrA 178 :KAGVK T0287 36 :E 2ahrA 186 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=16814 # 1rr7A.28.85 read from T0287.t04.many.frag # found chain 1rr7A in template set Warning: unaligning (T0287)N33 (1rr7A)N91 because G (3-10) conformation "forbidden" or filtered. T0287 28 :ENELL 1rr7A 86 :IWNDF T0287 34 :TDE 1rr7A 92 :GRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16816 # 1cr1A.28.88 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 28 :ENELLNTDE 1cr1A 359 :RVRLRQSDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16817 # 1uw4B.28.29 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :ENELL 1uw4B 797 :KLPWQ T0287 34 :TDE 1uw4B 803 :QEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16819 # 1utg.28.43 read from T0287.t04.many.frag # found chain 1utg in training set T0287 28 :ENELLNTDE 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16820 # 1m40A.28.169 read from T0287.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)N33 (1m40A)T200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 28 :ENELL 1m40A 195 :TGELL T0287 36 :E 1m40A 203 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=16822 # 1vfgA.28.179 read from T0287.t04.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1vfgA 180 :NL T0287 31 :LLNTDE 1vfgA 183 :LLKEAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16824 # 1gqeA.28.42 read from T0287.t04.many.frag # found chain 1gqeA in template set T0287 28 :ENELLNTDE 1gqeA 43 :QPDVWNEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16825 # 2ak3A.28.60 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 28 :ENELLNTDE 2ak3A 60 :QGKLIPDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16826 # 2cwyA.28.25 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 28 :ENELLNT 2cwyA 26 :PYWLKAT T0287 36 :E 2cwyA 34 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=16828 # 1fiuA.28.17 read from T0287.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)N29 (1fiuA)G19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :E 1fiuA 18 :D T0287 31 :LL 1fiuA 21 :IL T0287 34 :TDE 1fiuA 24 :TNN Number of specific fragments extracted= 3 number of extra gaps= 2 total=16831 # 1jalA.28.148 read from T0287.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :ENELL 1jalA 149 :KRAKG T0287 34 :TDE 1jalA 155 :DKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16833 # 1x2iA.28.17 read from T0287.t04.many.frag # found chain 1x2iA in template set T0287 28 :ENELLNTDE 1x2iA 15 :GLPHVSATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16834 # 1s7zA.28.24 read from T0287.t04.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)N29 (1s7zA)D25 because G (3-10) conformation "forbidden" or filtered. T0287 28 :E 1s7zA 24 :Y T0287 30 :ELLNTDE 1s7zA 26 :DIRDTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16836 # 1uj8A.28.48 read from T0287.t04.many.frag # found chain 1uj8A in training set T0287 28 :ENELLNTDE 1uj8A 49 :DLEDFDDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16837 # 2d28C.28.15 read from T0287.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 2d28C 16 :ER T0287 31 :LLNTDE 2d28C 19 :RLKDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16839 # 1ix9A.28.58 read from T0287.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1ix9A)K59 T0287 29 :NELLNTDE 1ix9A 60 :LDQLPADK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16840 # 1whsA.29.201 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1whsA)S199 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1whsA 195 :H T0287 31 :LL 1whsA 197 :IV T0287 34 :TDEK 1whsA 200 :DDTY Number of specific fragments extracted= 3 number of extra gaps= 2 total=16843 # 1hynP.29.141 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1hynP 142 :E T0287 31 :LLNTDEK 1hynP 144 :QIRPQDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16845 # 1pu6A.29.57 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 29 :N 1pu6A 58 :A T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEK 1pu6A 63 :NDDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=16848 # 1u20A.29.191 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u20A 192 :L T0287 31 :LLNTDEK 1u20A 194 :LLREDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16850 # 1k3yA.29.107 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 29 :NELL 1k3yA 109 :LPVC T0287 34 :T 1k3yA 114 :P T0287 37 :K 1k3yA 117 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=16853 # 1u3eM.29.102 read from T0287.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 29 :N 1u3eM 103 :R T0287 31 :LL 1u3eM 105 :TL T0287 34 :TDEK 1u3eM 108 :VSKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=16856 # 2d3dA.29.55 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELL 2d3dA 491 :KGVL T0287 34 :TDEK 2d3dA 496 :LGAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16858 # 1cr1A.29.89 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 29 :NELLNTDEK 1cr1A 360 :VRLRQSDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16859 # 2cwyA.29.26 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 29 :NELLNT 2cwyA 27 :YWLKAT T0287 36 :EK 2cwyA 34 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16861 # 1kicA.29.104 read from T0287.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0287)N29 (1kicA)M93 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELLNTDEK 1kicA 94 :PILNIPEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=16862 # 1cy5A.29.31 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :N 1cy5A 32 :D T0287 31 :LLNTDEK 1cy5A 34 :FLTISEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16864 # 1vflA.29.330 read from T0287.t04.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)E30 (1vflA)S330 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1vflA)P333 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1vflA 329 :S T0287 31 :LL 1vflA 331 :FL T0287 34 :TDEK 1vflA 334 :EDEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16867 # 1qqfA.29.24 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 29 :NELL 1qqfA 1034 :WEKF T0287 35 :DEK 1qqfA 1040 :EKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16869 # 1ix9A.29.59 read from T0287.t04.many.frag # found chain 1ix9A in training set T0287 29 :NELLNTDEK 1ix9A 60 :LDQLPADKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16870 # 2etjA.29.214 read from T0287.t04.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 29 :N 2etjA 203 :K T0287 31 :LLNTDEK 2etjA 205 :LISENRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16872 # 1i58A.29.114 read from T0287.t04.many.frag # found chain 1i58A in training set T0287 29 :NELLNTDEK 1i58A 466 :KGLIDESKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16873 # 1yrbA.29.180 read from T0287.t04.many.frag # found chain 1yrbA in template set T0287 29 :NELLNTDEK 1yrbA 167 :VDLLSEEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16874 # 1d2tA.29.52 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 29 :NELLNTD 1d2tA 53 :RLLRNTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16875 # 1uptB.29.32 read from T0287.t04.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)N33 (1uptB)P2205 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELL 1uptB 2201 :VLKF T0287 34 :TDEK 1uptB 2206 :DDQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16877 # 1uw4B.29.30 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELLNTDEK 1uw4B 799 :PWQDQEVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16878 # 1f74A.29.50 read from T0287.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N33 (1f74A)S55 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :NELL 1f74A 51 :NFML T0287 34 :TDEK 1f74A 56 :TEEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16880 # 1rr7A.29.86 read from T0287.t04.many.frag # found chain 1rr7A in template set T0287 29 :NELLNTDEK 1rr7A 87 :WNDFNGRNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16881 # 1m40A.29.170 read from T0287.t04.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)N29 (1m40A)G196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1m40A)T200 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 30 :ELL 1m40A 197 :ELL T0287 36 :EK 1m40A 203 :SR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16883 # 1fzcA.29.22 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 29 :NELLNTDEK 1fzcA 133 :IQLLQKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16884 # 1x2iA.29.18 read from T0287.t04.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)N29 (1x2iA)L16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1x2iA)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LLNTDEK 1x2iA 18 :HVSATLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16885 # 1u61A.29.64 read from T0287.t04.many.frag # found chain 1u61A in template set Warning: unaligning (T0287)E30 (1u61A)A63 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u61A 62 :T T0287 31 :LLNTDEK 1u61A 64 :FLTEEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16887 # 1y0nA.29.6 read from T0287.t04.many.frag # found chain 1y0nA in template set T0287 29 :NELLNTDEK 1y0nA 5 :HDLLEADTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16888 # 1vfgA.29.180 read from T0287.t04.many.frag # found chain 1vfgA in template set T0287 29 :NELLNTDEK 1vfgA 181 :LGLLKEAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16889 # 1gqeA.29.43 read from T0287.t04.many.frag # found chain 1gqeA in template set T0287 29 :NELLNTDEK 1gqeA 44 :PDVWNEPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16890 # 1jalA.29.149 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 29 :NELLNTDEK 1jalA 150 :RAKGGDKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16891 # 1hynP.30.142 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1hynP 144 :QIRPQDRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16892 # 2cwyA.30.27 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 30 :ELLNT 2cwyA 28 :WLKAT T0287 36 :EKK 2cwyA 34 :EER Number of specific fragments extracted= 2 number of extra gaps= 1 total=16894 # 1k3yA.30.108 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 30 :ELL 1k3yA 110 :PVC T0287 34 :T 1k3yA 114 :P T0287 37 :KK 1k3yA 117 :KD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16897 # 1whsA.30.202 read from T0287.t04.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1whsA 197 :IVSDDTYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16898 # 1u3eM.30.103 read from T0287.t04.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1u3eM 105 :TLNVSKAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16899 # 1u20A.30.192 read from T0287.t04.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u20A)R196 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1u20A 194 :LL T0287 34 :TDEKK 1u20A 197 :EDQIQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=16901 # 1pu6A.30.58 read from T0287.t04.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEKK 1pu6A 63 :NDDEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=16903 # 1cr1A.30.90 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 30 :ELLNTDEKK 1cr1A 361 :RLRQSDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16904 # 2d3dA.30.56 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 30 :ELLNTDEKK 2d3dA 492 :GVLALGARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16905 # 1vflA.30.331 read from T0287.t04.many.frag # found chain 1vflA in template set T0287 30 :ELLNTDEKK 1vflA 330 :SFLPEDEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16906 # 1qqfA.30.25 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 30 :ELL 1qqfA 1035 :EKF T0287 35 :DEKK 1qqfA 1040 :EKRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16908 # 1yrbA.30.181 read from T0287.t04.many.frag # found chain 1yrbA in template set T0287 30 :ELLNTDEKK 1yrbA 168 :DLLSEEEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16909 # 1ix9A.30.60 read from T0287.t04.many.frag # found chain 1ix9A in training set T0287 30 :ELLNTDEKK 1ix9A 61 :DQLPADKKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16910 # 1kicA.30.105 read from T0287.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0287)N33 (1kicA)N97 because G (3-10) conformation "forbidden" or filtered. T0287 30 :ELL 1kicA 94 :PIL T0287 34 :TDEKK 1kicA 98 :IPENV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16912 # 1uptB.30.33 read from T0287.t04.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. T0287 30 :E 1uptB 2202 :L T0287 32 :LNTDEKK 1uptB 2204 :FPDDQTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16914 # 1d2tA.30.53 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 30 :ELLNTD 1d2tA 54 :LLRNTE T0287 38 :K 1d2tA 62 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16916 # 1w33A.30.116 read from T0287.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N33 (1w33A)S189 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1w33A 186 :ENL T0287 34 :TDEKK 1w33A 190 :QEESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16918 # 1f74A.30.51 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 30 :ELLNTDEKK 1f74A 52 :FMLSTEEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16919 # 1e9rA.30.195 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 30 :ELLNTDEKK 1e9rA 266 :LFAGSNEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16920 # 1cy5A.30.32 read from T0287.t04.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1cy5A)T36 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1cy5A 34 :FL T0287 34 :TDEKK 1cy5A 37 :ISEEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16922 # 1uw4B.30.31 read from T0287.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N33 (1uw4B)D802 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1uw4B 799 :PWQ T0287 34 :TDEKK 1uw4B 803 :QEVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16924 # 1jalA.30.150 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 30 :ELLNTDEKK 1jalA 151 :AKGGDKEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16925 # 1g73A.30.66 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 30 :ELLNTDEKK 1g73A 67 :GKMNSEEED Number of specific fragments extracted= 1 number of extra gaps= 0 total=16926 # 1u7kA.30.60 read from T0287.t04.many.frag # found chain 1u7kA in template set Warning: unaligning (T0287)N33 (1u7kA)T64 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1u7kA 61 :TLL T0287 34 :TDEKK 1u7kA 65 :GEEKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16928 # 1y0nA.30.7 read from T0287.t04.many.frag # found chain 1y0nA in template set Warning: unaligning (T0287)N33 (1y0nA)E9 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1y0nA 6 :DLL T0287 34 :TDEKK 1y0nA 10 :ADTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16930 # 2etjA.30.215 read from T0287.t04.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 2etjA 205 :LISENRFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16931 # 1uslA.30.138 read from T0287.t04.many.frag # found chain 1uslA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1uslA)W132 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1uslA)W132 T0287 32 :LNTDEKK 1uslA 133 :SKAQRHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16932 # 1u84A.30.39 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 30 :ELLNTDEKK 1u84A 37 :AVYETEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16933 # 2ahmA.30.42 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 30 :ELLNTDEKK 2ahmA 43 :DILLAKDTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16934 # 1ydiA.30.185 read from T0287.t04.many.frag # found chain 1ydiA in template set T0287 30 :ELLNTDEKK 1ydiA 181 :ELTHQEHRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16935 # 2cwyA.31.28 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LLNT 2cwyA 29 :LKAT T0287 36 :EKKK 2cwyA 34 :EERR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16937 # 1hynP.31.143 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 31 :LLNTDEKKK 1hynP 144 :QIRPQDREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16938 # 1k3yA.31.109 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 31 :LL 1k3yA 111 :VC T0287 34 :T 1k3yA 114 :P T0287 37 :KKK 1k3yA 117 :KDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=16941 # 2d3dA.31.57 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 31 :LLNTDEKKK 2d3dA 493 :VLALGARRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16942 # 1cr1A.31.91 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 31 :LLNTDEKKK 1cr1A 362 :LRQSDSLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16943 # 1qqfA.31.26 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 31 :LL 1qqfA 1036 :KF T0287 35 :DEKKK 1qqfA 1040 :EKRQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16945 # 1u3eM.31.104 read from T0287.t04.many.frag # found chain 1u3eM in template set T0287 31 :LLNTDEKKK 1u3eM 105 :TLNVSKAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16946 # 1w33A.31.117 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 31 :LLNTDEKKK 1w33A 187 :NLSQEESKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16947 # 1whsA.31.203 read from T0287.t04.many.frag # found chain 1whsA in template set T0287 31 :LLNTDEKKK 1whsA 197 :IVSDDTYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16948 # 1u20A.31.193 read from T0287.t04.many.frag # found chain 1u20A in template set T0287 31 :LLNTDEKKK 1u20A 194 :LLREDQIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16949 # 1b4fA.31.53 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 31 :LLNTDEKKK 1b4fA 54 :VTLAGHQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16950 # 1vflA.31.332 read from T0287.t04.many.frag # found chain 1vflA in template set T0287 31 :LLNTDEKKK 1vflA 331 :FLPEDEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16951 # 1uptB.31.34 read from T0287.t04.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. T0287 32 :LNTDEKKK 1uptB 2204 :FPDDQTQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16952 # 1yrbA.31.182 read from T0287.t04.many.frag # found chain 1yrbA in template set T0287 31 :LLNTDEKKK 1yrbA 169 :LLSEEEKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=16953 # 1ix9A.31.61 read from T0287.t04.many.frag # found chain 1ix9A in training set T0287 31 :LLNTDEKKK 1ix9A 62 :QLPADKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16954 # 1e9rA.31.196 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1e9rA)S270 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1e9rA 267 :FA T0287 35 :DEKKK 1e9rA 271 :NEASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16956 # 1u84A.31.40 read from T0287.t04.many.frag # found chain 1u84A in training set Warning: unaligning (T0287)E36 (1u84A)D43 because E (beta_S) conformation "forbidden" or filtered. T0287 31 :LLNTD 1u84A 38 :VYETE T0287 37 :KKK 1u84A 44 :ART Number of specific fragments extracted= 2 number of extra gaps= 1 total=16958 # 1d2tA.31.54 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 31 :LLNTD 1d2tA 55 :LRNTE T0287 38 :KK 1d2tA 62 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16960 # 1pu6A.31.59 read from T0287.t04.many.frag # found chain 1pu6A in training set T0287 31 :LLNTDEKKK 1pu6A 60 :ILENDDEIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16961 # 1g73A.31.67 read from T0287.t04.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)N33 (1g73A)N70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 31 :LL 1g73A 68 :KM T0287 35 :DEKKK 1g73A 72 :EEEDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16963 # 1oi7A.31.269 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 31 :LLNTDEKKK 1oi7A 270 :IPVADTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16964 # 1u7kA.31.61 read from T0287.t04.many.frag # found chain 1u7kA in template set T0287 31 :LLNTDEKKK 1u7kA 62 :LLTGEEKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16965 # 1f74A.31.52 read from T0287.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N33 (1f74A)S55 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1f74A 53 :ML T0287 34 :TDEKKK 1f74A 56 :TEEKKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16967 # 1uw4B.31.32 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 31 :LLNTDEKKK 1uw4B 800 :WQDQEVKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16968 # 1vpmA.31.141 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 31 :LLNTDEKKK 1vpmA 130 :EPQTEEEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16969 # 1jalA.31.151 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 31 :LLNTDEKKK 1jalA 152 :KGGDKEAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16970 # 1kicA.31.106 read from T0287.t04.many.frag # found chain 1kicA in training set T0287 31 :LLNTDEKKK 1kicA 95 :ILNIPENVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16971 # 1no4A.31.17 read from T0287.t04.many.frag # found chain 1no4A in template set T0287 31 :LLNTDEKKK 1no4A 19 :ELAQSERTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16972 # 2ahmA.31.43 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 31 :LLNTDEKKK 2ahmA 44 :ILLAKDTTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16973 # 1x2iA.31.20 read from T0287.t04.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)N33 (1x2iA)S20 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1x2iA 18 :HV T0287 34 :TDEKKK 1x2iA 21 :ATLARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16975 # 2cwyA.32.29 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 2cwyA 30 :K T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKI 2cwyA 34 :EERRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=16978 # 1qqfA.32.27 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 32 :L 1qqfA 1037 :F T0287 35 :DEKKKI 1qqfA 1040 :EKRQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16980 # 1b4fA.32.54 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 32 :LNTDEKKKI 1b4fA 55 :TLAGHQKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16981 # 1cr1A.32.92 read from T0287.t04.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)N33 (1cr1A)Q364 because G (3-10) conformation "forbidden" or filtered. T0287 32 :L 1cr1A 363 :R T0287 34 :TDEKKKI 1cr1A 365 :SDSLKRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16983 # 1k3yA.32.110 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)N33 (1k3yA)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 32 :L 1k3yA 112 :C T0287 34 :T 1k3yA 114 :P T0287 37 :KKKI 1k3yA 117 :KDAK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16986 # 2d3dA.32.58 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 32 :LNTDEKKKI 2d3dA 494 :LALGARRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16987 # 1w33A.32.118 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 32 :LNTDEKKKI 1w33A 188 :LSQEESKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16988 # 1uptB.32.35 read from T0287.t04.many.frag # found chain 1uptB in training set T0287 32 :LNTDEKKKI 1uptB 2204 :FPDDQTQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16989 # 1u84A.32.41 read from T0287.t04.many.frag # found chain 1u84A in training set Warning: unaligning (T0287)E36 (1u84A)D43 because E (beta_S) conformation "forbidden" or filtered. T0287 32 :LNTD 1u84A 39 :YETE T0287 37 :KKKI 1u84A 44 :ARTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16991 # 1hynP.32.144 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 32 :LNTDEKKKI 1hynP 145 :IRPQDREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16992 # 1vpmA.32.142 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 32 :LNTDEKKKI 1vpmA 131 :PQTEEEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16993 # 1s2xA.32.46 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 32 :LNTD 1s2xA 40 :KDSN T0287 39 :KI 1s2xA 47 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16995 # 1vflA.32.333 read from T0287.t04.many.frag # found chain 1vflA in template set T0287 32 :LNTDEKKKI 1vflA 332 :LPEDEKKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16996 # 1jalA.32.152 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 32 :LNTDEKKKI 1jalA 153 :GGDKEAKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16997 # 1d2tA.32.55 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 32 :LNTD 1d2tA 56 :RNTE T0287 38 :KKI 1d2tA 62 :KLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16999 # 1g73A.32.68 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 32 :LNTDEKKKI 1g73A 69 :MNSEEEDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17000 # 2ex0A.32.247 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 32 :LNTDEKKKI 2ex0A 272 :GNTDVREYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17001 # 1oi7A.32.270 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E36 (1oi7A)T275 because E (beta_S) conformation "forbidden" or filtered. T0287 32 :LNTD 1oi7A 271 :PVAD T0287 37 :KKKI 1oi7A 276 :IDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17003 # 1u3eM.32.105 read from T0287.t04.many.frag # found chain 1u3eM in template set T0287 32 :LNTDEKKKI 1u3eM 106 :LNVSKAQQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17004 # 1uw4B.32.33 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 32 :LNTDEKKKI 1uw4B 801 :QDQEVKDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17005 # 1ix9A.32.62 read from T0287.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)N33 (1ix9A)P64 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1ix9A 63 :L T0287 34 :TDEKKKI 1ix9A 65 :ADKKTVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17007 # 1bo1A.32.251 read from T0287.t04.many.frag # found chain 1bo1A in template set Warning: unaligning (T0287)N33 (1bo1A)G253 because S (epsilon) conformation "forbidden" or filtered. T0287 32 :L 1bo1A 252 :V T0287 34 :TDEKKKI 1bo1A 254 :EESKKNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17009 # 1e9rA.32.197 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)T34 (1e9rA)S270 because Y (epsilon') conformation "forbidden" or filtered. T0287 32 :LN 1e9rA 268 :AG T0287 35 :DEKKKI 1e9rA 271 :NEASKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17011 # 1yrbA.32.183 read from T0287.t04.many.frag # found chain 1yrbA in template set T0287 32 :LNTDEKKKI 1yrbA 170 :LSEEEKERH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17012 # 1u7kA.32.62 read from T0287.t04.many.frag # found chain 1u7kA in template set T0287 32 :LNTDEKKKI 1u7kA 63 :LTGEEKQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17013 # 1xsvA.32.24 read from T0287.t04.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)N33 (1xsvA)L23 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1xsvA 22 :L T0287 34 :TDEKKKI 1xsvA 24 :TNKQRNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17015 # 1szqA.32.450 read from T0287.t04.many.frag # found chain 1szqA in template set T0287 32 :LNTDEKKKI 1szqA 451 :FPTRQQQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17016 # 1orjA.32.43 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)E1045 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKI 1orjA 1046 :LEKRKEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=17017 # 1u20A.32.194 read from T0287.t04.many.frag # found chain 1u20A in template set T0287 32 :LNTDEKKKI 1u20A 195 :LREDQIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17018 # 2b0tA.32.111 read from T0287.t04.many.frag # found chain 2b0tA in template set T0287 32 :LNTDEKKKI 2b0tA 112 :ATTDEEKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17019 # 2cwyA.33.30 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 33 :NTDEKKKII 2cwyA 31 :ATGEERRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17020 # 1b4fA.33.55 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 33 :NTDEKKKII 1b4fA 56 :LAGHQKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17021 # 1qqfA.33.28 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKII 1qqfA 1040 :EKRQEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17022 # 1bo1A.33.252 read from T0287.t04.many.frag # found chain 1bo1A in template set Warning: unaligning (T0287)N33 (1bo1A)G253 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1bo1A 254 :EESKKNFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17023 # 1u84A.33.42 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 33 :NTDEKKKII 1u84A 40 :ETEDARTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17024 # 1vpmA.33.143 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 33 :NTDEKKKII 1vpmA 132 :QTEEEKRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17025 # 1s2xA.33.47 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 33 :NTD 1s2xA 41 :DSN T0287 39 :KII 1s2xA 47 :DFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17027 # 1w33A.33.119 read from T0287.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N33 (1w33A)S189 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1w33A 190 :QEESKSLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17028 # 2d3dA.33.59 read from T0287.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 2d3dA 496 :LGARRKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17029 # 1cr1A.33.93 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 33 :NTDEKKKII 1cr1A 364 :QSDSLKREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17030 # 1k3yA.33.111 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 33 :NT 1k3yA 113 :PP T0287 37 :KKKII 1k3yA 117 :KDAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17032 # 1uptB.33.36 read from T0287.t04.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)N33 (1uptB)P2205 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1uptB 2206 :DDQTQKIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17033 # 1orjA.33.44 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKII 1orjA 1046 :LEKRKEFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17034 # 1x2iA.33.22 read from T0287.t04.many.frag # found chain 1x2iA in template set T0287 33 :NTDEKKKII 1x2iA 20 :SATLARRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17035 # 1g73A.33.69 read from T0287.t04.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 33 :N 1g73A 70 :N T0287 35 :DEKKKII 1g73A 72 :EEEDEVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=17037 # 1hynP.33.145 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 33 :NTDEKKKII 1hynP 146 :RPQDREELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17038 # 1jfmA.33.131 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 33 :NTDEKKKII 1jfmA 132 :ANDESGVIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17039 # 1jalA.33.153 read from T0287.t04.many.frag # found chain 1jalA in template set T0287 33 :NTDEKKKII 1jalA 154 :GDKEAKFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17040 # 1uw4B.33.34 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 33 :NTDEKKKII 1uw4B 802 :DQEVKDYVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17041 # 1szqA.33.451 read from T0287.t04.many.frag # found chain 1szqA in template set T0287 33 :NTDEKKKII 1szqA 452 :PTRQQQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17042 # 1zroA.33.416 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 33 :NTDEKKKII 1zroA 417 :NDLSNRKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17043 # 1y0nA.33.10 read from T0287.t04.many.frag # found chain 1y0nA in template set Warning: unaligning (T0287)N33 (1y0nA)E9 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1y0nA 10 :ADTLNNLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17044 # 2ex0A.33.248 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 33 :NTDEKKKII 2ex0A 273 :NTDVREYYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17045 # 1u7kA.33.63 read from T0287.t04.many.frag # found chain 1u7kA in template set T0287 33 :NTDEKKKII 1u7kA 64 :TGEEKQRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17046 # 1ct5A.33.6 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 33 :NTDEKKKII 1ct5A 8 :DEDRKTQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17047 # 1oi7A.33.271 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 33 :NTDEKKKII 1oi7A 272 :VADTIDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17048 # 1ykhA.33.42 read from T0287.t04.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1ykhA)P141 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKII 1ykhA 142 :DMYERKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17049 # 1vflA.33.334 read from T0287.t04.many.frag # found chain 1vflA in template set T0287 33 :NTDEKKKII 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17050 # 1usyA.33.142 read from T0287.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)N33 (1usyA)P143 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1usyA 144 :KDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17051 # 1d2tA.33.56 read from T0287.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 33 :NTD 1d2tA 57 :NTE T0287 38 :KKII 1d2tA 62 :KLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17053 # 2cwyA.34.31 read from T0287.t04.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 34 :T 2cwyA 32 :T T0287 36 :EKKKIID 2cwyA 34 :EERRLLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17055 # 1s2xA.34.48 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 34 :TD 1s2xA 42 :SN T0287 39 :KIID 1s2xA 47 :DFLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17057 # 1b4fA.34.56 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 34 :TDEKKKIID 1b4fA 57 :AGHQKKILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17058 # 1bo1A.34.253 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 34 :TDEKKKIID 1bo1A 254 :EESKKNFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17059 # 1qqfA.34.29 read from T0287.t04.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKIID 1qqfA 1040 :EKRQEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17060 # 1vpmA.34.144 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 34 :TDEKKKIID 1vpmA 133 :TEEEKRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17061 # 1w33A.34.120 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 34 :TDEKKKIID 1w33A 190 :QEESKSLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17062 # 1u84A.34.43 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 34 :TDEKKKIID 1u84A 41 :TEDARTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17063 # 1jfmA.34.132 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 34 :TDEKKKIID 1jfmA 133 :NDESGVIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17064 # 1orjA.34.45 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 34 :TDEKKKIID 1orjA 1046 :LEKRKEFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17065 # 2d3dA.34.60 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 34 :TDEKKKIID 2d3dA 496 :LGARRKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17066 # 1qgoA.34.86 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 34 :TDEKKKIID 1qgoA 87 :GDEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17067 # 1oi7A.34.272 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 34 :TDEKKKIID 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17068 # 1vliA.34.265 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 34 :TDEKKKIID 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17069 # 1cr1A.34.94 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 34 :TDEKKKIID 1cr1A 365 :SDSLKREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=17070 # 1ct5A.34.7 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 34 :TDEKKKIID 1ct5A 9 :EDRKTQLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17071 # 1yvrA.34.237 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 34 :TDEKKKIID 1yvrA 238 :TKDELEIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17072 # 1g73A.34.70 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 34 :TDEKKKIID 1g73A 71 :SEEEDEVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17073 # 3fapB.34.22 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 34 :T 3fapB 130 :E T0287 36 :EKKKIID 3fapB 132 :NVKGMFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17075 # 1i60A.34.75 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 34 :TDEKKKIID 1i60A 76 :EKGHNEIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17076 # 1y0nA.34.11 read from T0287.t04.many.frag # found chain 1y0nA in template set T0287 34 :TDEKKKIID 1y0nA 10 :ADTLNNLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17077 # 2jdxA.34.79 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 34 :TDEKKKIID 2jdxA 117 :KDHLKKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17078 # 1zroA.34.417 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 34 :TDEKKKIID 1zroA 418 :DLSNRKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17079 # 1x2iA.34.23 read from T0287.t04.many.frag # found chain 1x2iA in template set T0287 34 :TDEKKKIID 1x2iA 21 :ATLARRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17080 # 1j5sA.34.216 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 34 :TDEKKKIID 1j5sA 205 :TSTLDGFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17081 # 1fzcA.34.27 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 34 :TDEKKKIID 1fzcA 138 :KNVRAQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17082 # 1ykhA.34.43 read from T0287.t04.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKIID 1ykhA 142 :DMYERKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17083 # 2c5rA.34.35 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 34 :TDE 2c5rA 98 :LQS T0287 39 :KIID 2c5rA 103 :EVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17085 # 2f6kA.34.62 read from T0287.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)D35 (2f6kA)G64 because T (delta_L) conformation "forbidden" or filtered. T0287 34 :T 2f6kA 63 :F T0287 36 :EKKKIID 2f6kA 65 :DKAETIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17087 # 1y8aA.34.189 read from T0287.t04.many.frag # found chain 1y8aA in training set T0287 34 :TDEKKKIID 1y8aA 168 :RSEVRKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17088 # 2cwyA.35.32 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 35 :DEKKKIIDQ 2cwyA 33 :GEERRLLQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17089 # 1b4fA.35.57 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 35 :DEKKKIIDQ 1b4fA 58 :GHQKKILNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17090 # 1s2xA.35.49 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 35 :D 1s2xA 43 :N T0287 39 :KIIDQ 1s2xA 47 :DFLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17092 # 1bo1A.35.254 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 35 :DEKKKIIDQ 1bo1A 255 :ESKKNFLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17093 # 1w33A.35.121 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 35 :DEKKKIIDQ 1w33A 191 :EESKSLLMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17094 # 1jfmA.35.133 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 35 :DEKKKIIDQ 1jfmA 134 :DESGVIMNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17095 # 1qqfA.35.30 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 35 :DEKKKIIDQ 1qqfA 1040 :EKRQEALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17096 # 1qgoA.35.87 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 35 :DEKKKIIDQ 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17097 # 2d3dA.35.61 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 35 :DEKKKIIDQ 2d3dA 497 :GARRKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17098 # 1vliA.35.266 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 35 :DEKKKIIDQ 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17099 # 1u84A.35.44 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 35 :DEKKKIIDQ 1u84A 42 :EDARTLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17100 # 1orjA.35.46 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 35 :DEKKKIIDQ 1orjA 1047 :EKRKEFVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17101 # 1oi7A.35.273 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 35 :DEKKKIIDQ 1oi7A 274 :DTIDEIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17102 # 1i60A.35.76 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 35 :DEKKKIIDQ 1i60A 77 :KGHNEIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17103 # 1vpmA.35.145 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 35 :DEKKKIIDQ 1vpmA 134 :EEEKRLYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=17104 # 3fapB.35.23 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17105 # 1yvrA.35.238 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 35 :DEKKKIIDQ 1yvrA 239 :KDELEIIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17106 # 2c5rA.35.36 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 35 :DE 2c5rA 99 :QS T0287 39 :KIIDQ 2c5rA 103 :EVLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17108 # 2jdxA.35.80 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 35 :DEKKKIIDQ 2jdxA 118 :DHLKKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17109 # 1fviA.35.102 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 35 :DEKKKIIDQ 1fviA 104 :DPLKKYIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17110 # 1ct5A.35.8 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 35 :DEKKKIIDQ 1ct5A 10 :DRKTQLIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17111 # 1zroA.35.418 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 35 :DEKKKIIDQ 1zroA 419 :LSNRKLVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17112 # 1j5sA.35.217 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)E36 (1j5sA)T207 because E (beta_S) conformation "forbidden" or filtered. T0287 35 :D 1j5sA 206 :S T0287 37 :KKKIIDQ 1j5sA 208 :LDGFLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17114 # 1fzcA.35.28 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 35 :DEKKKIIDQ 1fzcA 139 :NVRAQLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17115 # 1p4xA.35.98 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 35 :DEKKKIIDQ 1p4xA 99 :EQREKIAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=17116 # 1qf5A.35.180 read from T0287.t04.many.frag # found chain 1qf5A in template set Warning: unaligning (T0287)E36 (1qf5A)D182 because P (beta_P) conformation "forbidden" or filtered. T0287 35 :D 1qf5A 181 :V T0287 37 :KKKIIDQ 1qf5A 183 :YQKVLDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17118 # 1x2iA.35.24 read from T0287.t04.many.frag # found chain 1x2iA in template set T0287 35 :DEKKKIIDQ 1x2iA 22 :TLARRLLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17119 # 1w2yA.35.123 read from T0287.t04.many.frag # found chain 1w2yA in training set T0287 35 :DEKKKIIDQ 1w2yA 124 :GDIYGILND Number of specific fragments extracted= 1 number of extra gaps= 0 total=17120 # 256bA.35.20 read from T0287.t04.many.frag # found chain 256bA in training set Warning: unaligning (T0287)E36 (256bA)N22 because Y (epsilon') conformation "forbidden" or filtered. T0287 35 :D 256bA 21 :D T0287 37 :KKKIIDQ 256bA 23 :AAQVKDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17122 # 1g73A.35.71 read from T0287.t04.many.frag # found chain 1g73A in template set T0287 35 :DEKKKIIDQ 1g73A 72 :EEEDEVWQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17123 # 1b4fA.36.58 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 36 :EKKKIIDQI 1b4fA 59 :HQKKILNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17124 # 2cwyA.36.33 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 36 :EKKKIIDQI 2cwyA 34 :EERRLLQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17125 # 1s2xA.36.50 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 36 :E 1s2xA 44 :D T0287 39 :KIIDQI 1s2xA 47 :DFLRRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17127 # 1w33A.36.122 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 36 :EKKKIIDQI 1w33A 192 :ESKSLLMQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17128 # 1vliA.36.267 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 36 :EKKKIIDQI 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17129 # 1bo1A.36.255 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 36 :EKKKIIDQI 1bo1A 256 :SKKNFLEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17130 # 1qqfA.36.31 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 36 :EKKKIIDQI 1qqfA 1041 :KRQEALELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17131 # 1qgoA.36.88 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 36 :EKKKIIDQI 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17132 # 3fapB.36.24 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17133 # 1jfmA.36.134 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 36 :EKKKIIDQI 1jfmA 135 :ESGVIMNKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17134 # 1oi7A.36.274 read from T0287.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E36 (1oi7A)T275 because E (beta_S) conformation "forbidden" or filtered. T0287 37 :KKKIIDQI 1oi7A 276 :IDEIVELV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17135 # 1i60A.36.77 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 36 :EKKKIIDQI 1i60A 78 :GHNEIITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17136 # 1qf5A.36.181 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 36 :EKKKIIDQI 1qf5A 182 :DYQKVLDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17137 # 1yvrA.36.239 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 36 :EKKKIIDQI 1yvrA 240 :DELEIIHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17138 # 1fviA.36.103 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 36 :EKKKIIDQI 1fviA 105 :PLKKYIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17139 # 1j5sA.36.218 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 36 :EKKKIIDQI 1j5sA 207 :TLDGFLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17140 # 2d3dA.36.62 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 36 :EKKKIIDQI 2d3dA 498 :ARRKLLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17141 # 1vpmA.36.146 read from T0287.t04.many.frag # found chain 1vpmA in training set T0287 36 :EKKKIIDQI 1vpmA 135 :EEKRLYETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17142 # 1zroA.36.419 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 36 :EKKKIIDQI 1zroA 420 :SNRKLVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17143 # 1w2yA.36.124 read from T0287.t04.many.frag # found chain 1w2yA in training set T0287 36 :EKKKIIDQI 1w2yA 125 :DIYGILNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17144 # 2jdxA.36.81 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 36 :EKKKIIDQI 2jdxA 119 :HLKKAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17145 # 2c5rA.36.37 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 36 :E 2c5rA 100 :S T0287 39 :KIIDQI 2c5rA 103 :EVLNYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17147 # 1u84A.36.45 read from T0287.t04.many.frag # found chain 1u84A in training set T0287 36 :EKKKIIDQI 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17148 # 1y8aA.36.191 read from T0287.t04.many.frag # found chain 1y8aA in training set T0287 36 :EKKKIIDQI 1y8aA 170 :EVRKIVESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17149 # 1fzcA.36.29 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 36 :EKKKIIDQI 1fzcA 140 :VRAQLVDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17150 # 1orjA.36.47 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 36 :EKKKIIDQI 1orjA 1048 :KRKEFVENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17151 # 1nekA.36.478 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 36 :EKKKIIDQI 1nekA 479 :AMAKGLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17152 # 1ct5A.36.9 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 36 :EKKKIIDQI 1ct5A 11 :RKTQLIAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17153 # 1bkrA.36.90 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 36 :EKKKIIDQI 1bkrA 91 :DEKSIITYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17154 # 1go3F.36.50 read from T0287.t04.many.frag # found chain 1go3F in training set T0287 36 :EKKKIIDQI 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17155 # 1b4fA.37.59 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 37 :KKKIIDQIK 1b4fA 60 :QKKILNSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17156 # 1w33A.37.123 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 37 :KKKIIDQIK 1w33A 193 :SKSLLMQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17157 # 1s2xA.37.51 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIK 1s2xA 47 :DFLRRVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17158 # 2cwyA.37.34 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 37 :KKKIIDQIK 2cwyA 35 :ERRLLQGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17159 # 1vliA.37.268 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 37 :KKKIIDQIK 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17160 # 3fapB.37.25 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 T0287 37 :KKKIIDQ 3fapB 133 :VKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17161 # 1i60A.37.78 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 37 :KKKIIDQIK 1i60A 79 :HNEIITEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17162 # 1bo1A.37.256 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 37 :KKKIIDQIK 1bo1A 257 :KKNFLEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17163 # 1qf5A.37.182 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 37 :KKKIIDQIK 1qf5A 183 :YQKVLDDTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17164 # 1jfmA.37.135 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 37 :KKKIIDQIK 1jfmA 136 :SGVIMNKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17165 # 2c5rA.37.38 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIK 2c5rA 103 :EVLNYIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17166 # 1qgoA.37.89 read from T0287.t04.many.frag # found chain 1qgoA in template set T0287 37 :KKKIIDQIK 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17167 # 1j5sA.37.219 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 37 :KKKIIDQIK 1j5sA 208 :LDGFLNALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17168 # 1qqfA.37.32 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 37 :KKKIIDQIK 1qqfA 1042 :RQEALELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17169 # 1fzcA.37.30 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 37 :KKKIIDQIK 1fzcA 141 :RAQLVDMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17170 # 1fviA.37.104 read from T0287.t04.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K39 (1fviA)K108 because P (beta_P) conformation "forbidden" or filtered. T0287 37 :KK 1fviA 106 :LK T0287 40 :IIDQIK 1fviA 109 :YIDRVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17172 # 256bA.37.22 read from T0287.t04.many.frag # found chain 256bA in training set T0287 37 :KKKIIDQIK 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17173 # 1hx1B.37.19 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 37 :KKKIIDQIK 1hx1B 169 :VEKIADQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17174 # 2d3dA.37.63 read from T0287.t04.many.frag # found chain 2d3dA in template set T0287 37 :KKKIIDQIK 2d3dA 499 :RRKLLKAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17175 # 1w2yA.37.125 read from T0287.t04.many.frag # found chain 1w2yA in training set T0287 37 :KKKIIDQIK 1w2yA 126 :IYGILNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17176 # 1nekA.37.479 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 37 :KKKIIDQIK 1nekA 480 :MAKGLEQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17177 # 2jdxA.37.82 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 37 :KKKIIDQIK 2jdxA 120 :LKKAVAEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17178 # 1qoyA.37.180 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 37 :KKKIIDQIK 1qoyA 166 :FQSQVDKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17179 # 1orjA.37.48 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 37 :KKKIIDQIK 1orjA 1049 :RKEFVENID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17180 # 1nt2B.37.73 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 37 :KKKIIDQIK 1nt2B 85 :DRYVVALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17181 # 1p4xA.37.100 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 37 :KKKIIDQIK 1p4xA 101 :REKIAERVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17182 # 1bkrA.37.91 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 37 :KKKIIDQIK 1bkrA 92 :EKSIITYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17183 # 1zroA.37.420 read from T0287.t04.many.frag # found chain 1zroA in template set T0287 37 :KKKIIDQIK 1zroA 421 :NRKLVGKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17184 # 1oi7A.37.275 read from T0287.t04.many.frag # found chain 1oi7A in training set T0287 37 :KKKIIDQIK 1oi7A 276 :IDEIVELVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17185 # 1yvrA.37.240 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 37 :KKKIIDQIK 1yvrA 241 :ELEIIHLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17186 # 1b4fA.38.60 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 38 :KKIIDQIKT 1b4fA 61 :KKILNSIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17187 # 1w33A.38.124 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 38 :KKIIDQIKT 1w33A 194 :KSLLMQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17188 # 1i60A.38.79 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 38 :KKIIDQIKT 1i60A 80 :NEIITEFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17189 # 1s2xA.38.52 read from T0287.t04.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIKT 1s2xA 47 :DFLRRVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17190 # 1qf5A.38.183 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 38 :KKIIDQIKT 1qf5A 184 :QKVLDDTMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17191 # 3fapB.38.26 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 T0287 38 :KKIIDQ 3fapB 134 :KGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17192 # 2cwyA.38.35 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 38 :KKIIDQIKT 2cwyA 36 :RRLLQGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17193 # 1vliA.38.269 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 38 :KKIIDQIKT 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17194 # 1hx1B.38.20 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 38 :KKIIDQIKT 1hx1B 170 :EKIADQLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17195 # 2c5rA.38.39 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIKT 2c5rA 103 :EVLNYIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=17196 # 1jfmA.38.136 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 38 :KKIIDQIKT 1jfmA 137 :GVIMNKWKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17197 # 1bo1A.38.257 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 38 :KKIIDQIKT 1bo1A 258 :KNFLEKLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17198 # 256bA.38.23 read from T0287.t04.many.frag # found chain 256bA in training set T0287 38 :KKIIDQIKT 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17199 # 1nt2B.38.74 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 38 :KKIIDQIKT 1nt2B 86 :RYVVALVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17200 # 1nekA.38.480 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 38 :KKIIDQIKT 1nekA 481 :AKGLEQLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17201 # 1qqfA.38.33 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 38 :KKIIDQIKT 1qqfA 1043 :QEALELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17202 # 1fzcA.38.31 read from T0287.t04.many.frag # found chain 1fzcA in template set T0287 38 :KKIIDQIKT 1fzcA 142 :AQLVDMKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17203 # 1j5sA.38.220 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 38 :KKIIDQIKT 1j5sA 209 :DGFLNALWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17204 # 1r7jA.38.63 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 38 :KKIIDQIKT 1r7jA 64 :EELLEDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17205 # 1ofcX.38.165 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 38 :KKIIDQIKT 1ofcX 853 :ERIMGQIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=17206 # 1qoyA.38.181 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 38 :KKIIDQIKT 1qoyA 167 :QSQVDKIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17207 # 1ct5A.38.11 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 38 :KKIIDQIKT 1ct5A 13 :TQLIAQYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=17208 # 1bkrA.38.92 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 38 :KKIIDQIKT 1bkrA 93 :KSIITYVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17209 # 1e6iA.38.71 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 38 :KKIIDQIKT 1e6iA 390 :EDFIYDARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17210 # 1jqnA.38.28 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 38 :KKIIDQIKT 1jqnA 29 :EHILERVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=17211 # 1td6A.38.53 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 38 :KKIIDQIKT 1td6A 42 :TFFLHQFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17212 # 1fi4A.38.298 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 38 :KKIIDQIKT 1fi4A 279 :KRIISWCHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17213 # 1fviA.38.105 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 38 :KKIIDQIKT 1fviA 107 :KKYIDRVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=17214 # 1p4xA.38.101 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 38 :KKIIDQIKT 1p4xA 102 :EKIAERVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17215 # 1vls.38.56 read from T0287.t04.many.frag # found chain 1vls in template set T0287 38 :KKIIDQIKT 1vls 91 :QNAKTTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17216 # 1b4fA.39.61 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 39 :KIIDQIKTM 1b4fA 62 :KILNSIQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17217 # 1i60A.39.80 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 39 :KIIDQIKTM 1i60A 81 :EIITEFKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17218 # 3fapB.39.27 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 39 :KIIDQ 3fapB 135 :GMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17219 # 1s2xA.39.53 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 39 :KIIDQIKTM 1s2xA 47 :DFLRRVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17220 # 2c5rA.39.40 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 39 :KIIDQIKTM 2c5rA 103 :EVLNYIETQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17221 # 1w33A.39.125 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 39 :KIIDQIKTM 1w33A 195 :SLLMQIKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17222 # 256bA.39.24 read from T0287.t04.many.frag # found chain 256bA in training set T0287 39 :KIIDQIKTM 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17223 # 1hx1B.39.21 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 39 :KIIDQIKTM 1hx1B 171 :KIADQLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17224 # 1vliA.39.270 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 39 :KIIDQIKTM 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17225 # 1qf5A.39.184 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 39 :KIIDQIKTM 1qf5A 185 :KVLDDTMAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17226 # 1nt2B.39.75 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 39 :KIIDQIKTM 1nt2B 87 :YVVALVKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17227 # 1bo1A.39.258 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 39 :KIIDQIKTM 1bo1A 259 :NFLEKLKRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17228 # 1jqnA.39.29 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 39 :KIIDQIKTM 1jqnA 30 :HILERVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17229 # 1td6A.39.54 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 39 :KIIDQIKTM 1td6A 43 :FFLHQFDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17230 # 1ofcX.39.166 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 39 :KIIDQIKTM 1ofcX 854 :RIMGQIERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17231 # 1e6iA.39.72 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 39 :KIIDQIKTM 1e6iA 391 :DFIYDARLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17232 # 1j5sA.39.221 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 39 :KIIDQIKTM 1j5sA 210 :GFLNALWKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17233 # 2jdxA.39.84 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 39 :KIIDQIKTM 2jdxA 122 :KAVAEIEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17234 # 1ct5A.39.12 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 39 :KIIDQIKTM 1ct5A 14 :QLIAQYESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17235 # 1jfmA.39.137 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 39 :KIIDQIKTM 1jfmA 138 :VIMNKWKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17236 # 2cwyA.39.36 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 39 :KIIDQIKTM 2cwyA 37 :RLLQGVILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17237 # 1qqfA.39.34 read from T0287.t04.many.frag # found chain 1qqfA in training set T0287 39 :KIIDQIKTM 1qqfA 1044 :EALELIKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17238 # 1gw5S.39.78 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 39 :KIIDQIKTM 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17239 # 1bkrA.39.93 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 39 :KIIDQIKTM 1bkrA 94 :SIITYVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17240 # 1orjA.39.50 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 39 :KIIDQIKTM 1orjA 1051 :EFVENIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17241 # 1fviA.39.106 read from T0287.t04.many.frag # found chain 1fviA in template set T0287 39 :KIIDQIKTM 1fviA 108 :KYIDRVEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17242 # 1r7jA.39.64 read from T0287.t04.many.frag # found chain 1r7jA in training set T0287 39 :KIIDQIKTM 1r7jA 65 :ELLEDIRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17243 # 1p4xA.39.102 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 39 :KIIDQIKTM 1p4xA 103 :KIAERVTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17244 # 1vls.39.57 read from T0287.t04.many.frag # found chain 1vls in template set T0287 39 :KIIDQIKTM 1vls 92 :NAKTTLAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17245 # 1h05A.39.56 read from T0287.t04.many.frag # found chain 1h05A in training set T0287 39 :KIIDQIKTM 1h05A 57 :QLLDWIHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17246 # 1i60A.40.81 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 40 :IIDQIKTMH 1i60A 82 :IITEFKGMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17247 # 1b4fA.40.62 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 40 :IIDQIKTMH 1b4fA 63 :ILNSIQVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17248 # 3fapB.40.28 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 40 :IIDQ 3fapB 136 :MFEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=17250 # 2c5rA.40.41 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 40 :IIDQIKTMH 2c5rA 104 :VLNYIETQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17251 # 256bA.40.25 read from T0287.t04.many.frag # found chain 256bA in training set T0287 40 :IIDQIKTMH 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17252 # 1nt2B.40.76 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 40 :IIDQIKTMH 1nt2B 88 :VVALVKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17253 # 1w33A.40.126 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 40 :IIDQIKTMH 1w33A 196 :LLMQIKSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17254 # 1s2xA.40.54 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 40 :IIDQIKTMH 1s2xA 48 :FLRRVQELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17255 # 1jqnA.40.30 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 40 :IIDQIKTMH 1jqnA 31 :ILERVETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17256 # 1hx1B.40.22 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 40 :IIDQIKTMH 1hx1B 172 :IADQLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17257 # 1e6iA.40.73 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 40 :IIDQIKTMH 1e6iA 392 :FIYDARLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17258 # 1td6A.40.55 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 40 :IIDQIKTMH 1td6A 44 :FLHQFDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17259 # 1gw5S.40.79 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 40 :IIDQIKTMH 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17260 # 1ofcX.40.167 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 40 :IIDQIKTMH 1ofcX 855 :IMGQIERGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17261 # 1orjA.40.51 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 40 :IIDQIKTMH 1orjA 1052 :FVENIDRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17262 # 1vls.40.58 read from T0287.t04.many.frag # found chain 1vls in template set T0287 40 :IIDQIKTMH 1vls 93 :AKTTLAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17263 # 1qf5A.40.185 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 40 :IIDQIKTMH 1qf5A 186 :VLDDTMAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17264 # 1vliA.40.271 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 40 :IIDQIKTMH 1vliA 260 :MVDGIRKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17265 # 1j5sA.40.222 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 40 :IIDQIKTMH 1j5sA 211 :FLNALWKSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17266 # 1bo1A.40.259 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 40 :IIDQIKTMH 1bo1A 260 :FLEKLKRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17267 # 1xlyA.40.49 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 40 :IIDQIKTMH 1xlyA 55 :LIKFVKKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17268 # 1bkrA.40.94 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 40 :IIDQIKTMH 1bkrA 95 :IITYVVTYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17269 # 1gqiA.40.614 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 40 :IIDQIKTMH 1gqiA 619 :GVEQVRAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17270 # 1nekA.40.482 read from T0287.t04.many.frag # found chain 1nekA in template set T0287 40 :IIDQIKTMH 1nekA 483 :GLEQLKVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17271 # 1p4xA.40.103 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 40 :IIDQIKTMH 1p4xA 104 :IAERVTLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17272 # 1ct5A.40.13 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 40 :IIDQIKTMH 1ct5A 15 :LIAQYESVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17273 # 2jdxA.40.85 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 40 :IIDQIKTMH 2jdxA 123 :AVAEIEEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17274 # 1v74B.40.43 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 40 :IIDQIKTMH 1v74B 44 :ILNCGEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17275 # 1hulA.40.63 read from T0287.t04.many.frag # found chain 1hulA in template set Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1hulA)L72 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1hulA)L72 T0287 40 :IID 1hulA 68 :LFK T0287 45 :KTMH 1hulA 73 :SLIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17277 # 2cwyA.40.37 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 40 :IIDQIKTMH 2cwyA 38 :LLQGVILLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17278 # 1i60A.41.82 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 41 :IDQIKTMHD 1i60A 83 :ITEFKGMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=17279 # 1b4fA.41.63 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 41 :IDQIKTMHD 1b4fA 64 :LNSIQVMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17280 # 2c5rA.41.42 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 41 :IDQIKTMHD 2c5rA 105 :LNYIETQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17281 # 3fapB.41.29 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 T0287 41 :IDQ 3fapB 137 :FEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=17283 # 1jqnA.41.31 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 41 :IDQIKTMHD 1jqnA 32 :LERVETIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17284 # 256bA.41.26 read from T0287.t04.many.frag # found chain 256bA in training set T0287 41 :IDQIKTMHD 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17285 # 1nt2B.41.77 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 41 :IDQIKTMHD 1nt2B 89 :VALVKALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17286 # 1s2xA.41.55 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 41 :IDQIKTMHD 1s2xA 49 :LRRVQELRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17287 # 1hx1B.41.23 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 41 :IDQIKTMHD 1hx1B 173 :ADQLEELNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17288 # 1bf5A.41.7 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 41 :IDQIKTMHD 1bf5A 143 :DSKVRNVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17289 # 1w33A.41.127 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 41 :IDQIKTMHD 1w33A 197 :LMQIKSNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17290 # 1gqiA.41.615 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 41 :IDQIKTMHD 1gqiA 620 :VEQVRAMQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17291 # 1e6iA.41.74 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 41 :IDQIKTMHD 1e6iA 393 :IYDARLVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17292 # 1td6A.41.56 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 41 :IDQIKTMHD 1td6A 45 :LHQFDKVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=17293 # 1ct5A.41.14 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 41 :IDQIKTMHD 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17294 # 1xlyA.41.50 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 41 :IDQIKTMHD 1xlyA 56 :IKFVKKLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17295 # 1gw5S.41.80 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 41 :IDQIKTMHD 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17296 # 2jdxA.41.86 read from T0287.t04.many.frag # found chain 2jdxA in template set T0287 41 :IDQIKTMHD 2jdxA 124 :VAEIEEMCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17297 # 1orjA.41.52 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 41 :IDQIKTMHD 1orjA 1053 :VENIDRVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17298 # 1bo1A.41.260 read from T0287.t04.many.frag # found chain 1bo1A in template set T0287 41 :IDQIKTMHD 1bo1A 261 :LEKLKRDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17299 # 1vls.41.59 read from T0287.t04.many.frag # found chain 1vls in template set T0287 41 :IDQIKTMHD 1vls 94 :KTTLAQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17300 # 1vdkA.41.204 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 41 :IDQIKTMHD 1vdkA 205 :AAQLKTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17301 # 1yvhA.41.62 read from T0287.t04.many.frag # found chain 1yvhA in template set T0287 41 :IDQIKTMHD 1yvhA 85 :LDLLPDTYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17302 # 1qf5A.41.186 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 41 :IDQIKTMHD 1qf5A 187 :LDDTMAVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17303 # 1bgf.41.80 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 41 :IDQIKTMHD 1bgf 80 :IHNLKRIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17304 # 1ofcX.41.168 read from T0287.t04.many.frag # found chain 1ofcX in template set T0287 41 :IDQIKTMHD 1ofcX 856 :MGQIERGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17305 # 1v74B.41.44 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 41 :IDQIKTMHD 1v74B 45 :LNCGEELFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17306 # 1vliA.41.272 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 41 :IDQIKTMHD 1vliA 261 :VDGIRKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17307 # 1j5sA.41.223 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 41 :IDQIKTMHD 1j5sA 212 :LNALWKSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17308 # 2f6lA.41.40 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 41 :IDQIKTMHD 2f6lA 74 :EQQLAKLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17309 # 1i60A.42.83 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 42 :DQIKTMHDF 1i60A 84 :TEFKGMMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=17310 # 1b4fA.42.64 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 42 :DQIKTMHDF 1b4fA 65 :NSIQVMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17311 # 1nt2B.42.78 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 42 :DQIKTMHDF 1nt2B 90 :ALVKALEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17312 # 1jqnA.42.32 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 42 :DQIKTMHDF 1jqnA 33 :ERVETIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17313 # 3fapB.42.30 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 42 :DQ 3fapB 138 :EV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=17315 # 1bf5A.42.8 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 42 :DQIKTMHDF 1bf5A 144 :SKVRNVKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17316 # 2c5rA.42.43 read from T0287.t04.many.frag # found chain 2c5rA in template set T0287 42 :DQIKTMHDF 2c5rA 106 :NYIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17317 # 256bA.42.27 read from T0287.t04.many.frag # found chain 256bA in training set T0287 42 :DQIKTMHDF 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17318 # 1gqiA.42.616 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 42 :DQIKTMHDF 1gqiA 621 :EQVRAMQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17319 # 1e6iA.42.75 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 42 :DQIKTMHDF 1e6iA 394 :YDARLVFNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17320 # 1s2xA.42.56 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 42 :DQIKTMHDF 1s2xA 50 :RRVQELRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17321 # 1hx1B.42.24 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 42 :DQIKTMHDF 1hx1B 174 :DQLEELNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17322 # 1xlyA.42.51 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 42 :DQIKTMHDF 1xlyA 57 :KFVKKLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17323 # 1orjA.42.53 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 42 :DQIKTMHDF 1orjA 1054 :ENIDRVYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17324 # 1td6A.42.57 read from T0287.t04.many.frag # found chain 1td6A in template set T0287 42 :DQIKTMHDF 1td6A 46 :HQFDKVMEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17325 # 2f6lA.42.41 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 42 :DQIKTMHDF 2f6lA 75 :QQLAKLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=17326 # 1zupA.42.285 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE at template residue (1zupA)L274 T0287 43 :QIKTMHDF 1zupA 275 :PIQFLEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=17327 # 1v74B.42.45 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 42 :DQIKTMHDF 1v74B 46 :NCGEELFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17328 # 1ct5A.42.15 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 42 :DQIKTMHDF 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17329 # 1vdkA.42.205 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 42 :DQIKTMHDF 1vdkA 206 :AQLKTTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17330 # 1gw5S.42.81 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 42 :DQIKTMHDF 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17331 # 1fjgT.42.53 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 42 :DQIKTMHDF 1fjgT 54 :KIMRKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17332 # 1nogA.42.29 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 42 :DQIKTMHDF 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17333 # 1u0fA.42.219 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 42 :DQIKTMHDF 1u0fA 219 :TNAETAKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17334 # 1w33A.42.128 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 42 :DQIKTMHDF 1w33A 198 :MQIKSNLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17335 # 1kkoA.42.212 read from T0287.t04.many.frag # found chain 1kkoA in training set T0287 42 :DQIKTMHDF 1kkoA 213 :EYVRWLSDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17336 # 1alu.42.118 read from T0287.t04.many.frag # found chain 1alu in template set T0287 42 :DQIKTMHDF 1alu 117 :MSTKVLIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17337 # 1moq.42.194 read from T0287.t04.many.frag # found chain 1moq in training set T0287 42 :DQIKTMHDF 1moq 435 :HGLQALPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17338 # 1ail.42.37 read from T0287.t04.many.frag # found chain 1ail in template set T0287 42 :DQIKTMHDF 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17339 # 2acvA.42.430 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 42 :DQIKTMHDF 2acvA 431 :KKVQEMKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17340 # 1i60A.43.84 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 43 :QIKTMHDFF 1i60A 85 :EFKGMMETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17341 # 1nt2B.43.79 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 43 :QIKTMHDFF 1nt2B 91 :LVKALEEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17342 # 1jqnA.43.33 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 43 :QIKTMHDFF 1jqnA 34 :RVETIRKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17343 # 2c5rA.43.44 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 T0287 43 :QIKTMHDF 2c5rA 107 :YIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=17344 # 3fapB.43.31 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 43 :Q 3fapB 139 :V T0287 48 :H 3fapB 144 :H T0287 51 :F 3fapB 147 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=17347 # 1e6iA.43.76 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 43 :QIKTMHDFF 1e6iA 395 :DARLVFNNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17348 # 1gqiA.43.617 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 43 :QIKTMHDFF 1gqiA 622 :QVRAMQRTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17349 # 1bf5A.43.9 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 43 :QIKTMHDFF 1bf5A 145 :KVRNVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17350 # 1hx1B.43.25 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 43 :QIKTMHDFF 1hx1B 175 :QLEELNKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17351 # 1b4fA.43.65 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 43 :QIKTMHDFF 1b4fA 66 :SIQVMRAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17352 # 256bA.43.28 read from T0287.t04.many.frag # found chain 256bA in training set T0287 43 :QIKTMHDFF 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17353 # 1vdkA.43.206 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 43 :QIKTMHDFF 1vdkA 207 :QLKTTLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17354 # 1moq.43.195 read from T0287.t04.many.frag # found chain 1moq in training set T0287 43 :QIKTMHDFF 1moq 436 :GLQALPSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17355 # 1s2xA.43.57 read from T0287.t04.many.frag # found chain 1s2xA in template set T0287 43 :QIKTMHDFF 1s2xA 51 :RVQELRINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17356 # 1zupA.43.286 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 43 :QIKTMHDFF 1zupA 275 :PIQFLEENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17357 # 1n1fA.43.117 read from T0287.t04.many.frag # found chain 1n1fA in template set T0287 43 :QIKTMHDFF 1n1fA 118 :ATRVIHDNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17358 # 2acvA.43.431 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 43 :QIKTMHDFF 2acvA 432 :KVQEMKEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17359 # 1orjA.43.54 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 43 :QIKTMHDFF 1orjA 1055 :NIDRVYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=17360 # 2ahmA.43.13 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 43 :QIKTMHDFF 2ahmA 14 :TSVVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17361 # 1u0fA.43.220 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 43 :QIKTMHDFF 1u0fA 220 :NAETAKEWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17362 # 1ail.43.38 read from T0287.t04.many.frag # found chain 1ail in template set T0287 43 :QIKTMHDFF 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17363 # 1fjgT.43.54 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 43 :QIKTMHDFF 1fjgT 55 :IMRKAESLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17364 # 1ct5A.43.16 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 43 :QIKTMHDFF 1ct5A 18 :QYESVREVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17365 # 2etsA.43.22 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 43 :QIKTMHDFF 2etsA 11 :EVNNMQQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17366 # 1xlyA.43.52 read from T0287.t04.many.frag # found chain 1xlyA in template set T0287 43 :QIKTMHDFF 1xlyA 58 :FVKKLRFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17367 # 1nogA.43.30 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 43 :QIKTMHDFF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17368 # 1vjxA.43.53 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 43 :QIKTMHDFF 1vjxA 42 :QERIHAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17369 # 2btoA.43.418 read from T0287.t04.many.frag # found chain 2btoA in template set T0287 43 :QIKTMHDFF 2btoA 419 :SAQELVQSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17370 # 1v74B.43.46 read from T0287.t04.many.frag # found chain 1v74B in template set T0287 43 :QIKTMHDFF 1v74B 47 :CGEELFMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17371 # 2cbiA.43.497 read from T0287.t04.many.frag # found chain 2cbiA in template set T0287 43 :QIKTMHDFF 2cbiA 528 :EFARMEEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17372 # 1i60A.44.85 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 44 :IKTMHDFFK 1i60A 86 :FKGMMETCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17373 # 1bf5A.44.10 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 44 :IKTMHDFFK 1bf5A 146 :VRNVKDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17374 # 1jqnA.44.34 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 44 :IKTMHDFFK 1jqnA 35 :VETIRKLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17375 # 1nt2B.44.80 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 44 :IKTMHDFFK 1nt2B 92 :VKALEEIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17376 # 1e6iA.44.77 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 44 :IKTMHDFFK 1e6iA 396 :ARLVFNNCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17377 # 1orjA.44.55 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 44 :IKTMHDFFK 1orjA 1056 :IDRVYDIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17378 # 1moq.44.196 read from T0287.t04.many.frag # found chain 1moq in training set T0287 44 :IKTMHDFFK 1moq 437 :LQALPSRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17379 # 1zupA.44.287 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 44 :IKTMHDFFK 1zupA 276 :IQFLEENLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17380 # 1n1fA.44.118 read from T0287.t04.many.frag # found chain 1n1fA in template set T0287 44 :IKTMHDFFK 1n1fA 119 :TRVIHDNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17381 # 1gqiA.44.618 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 44 :IKTMHDFFK 1gqiA 623 :VRAMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17382 # 3fapB.44.32 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FK 3fapB 147 :ME Number of specific fragments extracted= 2 number of extra gaps= 2 total=17384 # 2acvA.44.432 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 44 :IKTMHDFFK 2acvA 433 :VQEMKEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17385 # 1u0fA.44.221 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 44 :IKTMHDFFK 1u0fA 221 :AETAKEWFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17386 # 1fjgT.44.55 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 44 :IKTMHDFFK 1fjgT 56 :MRKAESLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17387 # 1ow4A.44.96 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 44 :IKTMHDFFK 1ow4A 86 :AKAVNDCAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17388 # 1ail.44.39 read from T0287.t04.many.frag # found chain 1ail in template set T0287 44 :IKTMHDFFK 1ail 40 :QKSLRGRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17389 # 1hx1B.44.26 read from T0287.t04.many.frag # found chain 1hx1B in template set T0287 44 :IKTMHDFFK 1hx1B 176 :LEELNKELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17390 # 1nogA.44.31 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 44 :IKTMHDFFK 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17391 # 2etsA.44.23 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 44 :IKTMHDFFK 2etsA 12 :VNNMQQNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17392 # 2cbiA.44.498 read from T0287.t04.many.frag # found chain 2cbiA in template set T0287 44 :IKTMHDFFK 2cbiA 529 :FARMEEACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17393 # 2c5rA.44.45 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 44 :IKTMHDF 2c5rA 108 :IETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=17394 # 1b4fA.44.66 read from T0287.t04.many.frag # found chain 1b4fA in template set T0287 44 :IKTMHDFFK 1b4fA 67 :IQVMRAQMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17395 # 1kkoA.44.214 read from T0287.t04.many.frag # found chain 1kkoA in training set T0287 44 :IKTMHDFFK 1kkoA 215 :VRWLSDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17396 # 256bA.44.29 read from T0287.t04.many.frag # found chain 256bA in training set T0287 44 :IKTMHDFFK 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17397 # 1h6kA.44.546 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 44 :IKTMHDFFK 1h6kA 566 :LAKFHEVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17398 # 2ahmA.44.14 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 44 :IKTMHDFFK 2ahmA 15 :SVVLLSVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17399 # 1ct5A.44.17 read from T0287.t04.many.frag # found chain 1ct5A in template set T0287 44 :IKTMHDFFK 1ct5A 19 :YESVREVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17400 # 1gw5S.44.83 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 44 :IKTMHDFFK 1gw5S 84 :IHNFVEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17401 # 2f6lA.44.43 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 44 :IKTMHDFFK 2f6lA 77 :LAKLGEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17402 # 1h5uA.44.734 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 44 :IKTMHDFFK 1h5uA 735 :IPELRQIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17403 # 1jqnA.45.35 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 45 :KTMHDFFKQ 1jqnA 36 :ETIRKLSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17404 # 1nt2B.45.81 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 45 :KTMHDFFKQ 1nt2B 93 :KALEEIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=17405 # 1orjA.45.56 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 45 :KTMHDFFKQ 1orjA 1057 :DRVYDIISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17406 # 1moq.45.197 read from T0287.t04.many.frag # found chain 1moq in training set T0287 45 :KTMHDFFKQ 1moq 438 :QALPSRIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17407 # 1u0fA.45.222 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 45 :KTMHDFFKQ 1u0fA 222 :ETAKEWFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17408 # 1zupA.45.288 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 45 :KTMHDFFKQ 1zupA 277 :QFLEENLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17409 # 1i60A.45.86 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 45 :KTMHDFFKQ 1i60A 87 :KGMMETCKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17410 # 1e6iA.45.78 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 45 :KTMHDFFKQ 1e6iA 397 :RLVFNNCRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17411 # 1bf5A.45.11 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 45 :KTMHDFFKQ 1bf5A 147 :RNVKDKVMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17412 # 1ow4A.45.97 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 45 :KTMHDFFKQ 1ow4A 87 :KAVNDCANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17413 # 2acvA.45.433 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 45 :KTMHDFFKQ 2acvA 434 :QEMKEMSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17414 # 1n1fA.45.119 read from T0287.t04.many.frag # found chain 1n1fA in template set T0287 45 :KTMHDFFKQ 1n1fA 120 :RVIHDNYDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17415 # 1ail.45.40 read from T0287.t04.many.frag # found chain 1ail in template set T0287 45 :KTMHDFFKQ 1ail 41 :KSLRGRGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=17416 # 1h6kA.45.547 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H48 (1h6kA)H570 because H (helix) conformation "forbidden" or filtered. T0287 45 :KTM 1h6kA 567 :AKF T0287 49 :DFFKQ 1h6kA 571 :EVFKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17418 # 2etsA.45.24 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 45 :KTMHDFFKQ 2etsA 13 :NNMQQNFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17419 # 1fjgT.45.56 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 45 :KTMHDFFKQ 1fjgT 57 :RKAESLIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17420 # 3fapB.45.33 read from T0287.t04.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FKQ 3fapB 147 :MER Number of specific fragments extracted= 2 number of extra gaps= 2 total=17422 # 1vjxA.45.55 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 45 :KTMHDFFKQ 1vjxA 44 :RIHAEIFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17423 # 1h5uA.45.735 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 45 :KTMHDFFKQ 1h5uA 736 :PELRQIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17424 # 1p4xA.45.108 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 45 :KTMHDFFKQ 1p4xA 109 :TLFDQIIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17425 # 1jfmA.45.143 read from T0287.t04.many.frag # found chain 1jfmA in template set T0287 45 :KTMHDFFKQ 1jfmA 144 :KDDGEFVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17426 # 1nogA.45.32 read from T0287.t04.many.frag # found chain 1nogA in training set T0287 45 :KTMHDFFKQ 1nogA 33 :DELNSFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17427 # 1gqiA.45.619 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 45 :KTMHDFFKQ 1gqiA 624 :RAMQRTWDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17428 # 2ahmA.45.15 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 45 :KTMHDFFKQ 2ahmA 16 :VVLLSVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17429 # 1j5sA.45.227 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 45 :KTMHDFFKQ 1j5sA 216 :WKSHEHFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17430 # 2f6lA.45.44 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 45 :KTMHDFFKQ 2f6lA 78 :AKLGEDARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17431 # 1jeyA.45.518 read from T0287.t04.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)K45 (1jeyA)G519 because S (epsilon) conformation "forbidden" or filtered. T0287 46 :TMHDFFKQ 1jeyA 520 :SLVDEFKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17432 # 1gw5S.45.84 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 45 :KTMHDFFKQ 1gw5S 85 :HNFVEVLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17433 # 2c5rA.45.46 read from T0287.t04.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 45 :KTMHDF 2c5rA 109 :ETQRTY T0287 53 :Q 2c5rA 117 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17435 # 1vdkA.45.208 read from T0287.t04.many.frag # found chain 1vdkA in training set T0287 45 :KTMHDFFKQ 1vdkA 209 :KTTLAAVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17436 # 1moq.46.198 read from T0287.t04.many.frag # found chain 1moq in training set T0287 46 :TMHDFFKQM 1moq 439 :ALPSRIEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17437 # 1zupA.46.289 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 46 :TMHDFFKQM 1zupA 278 :FLEENLSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17438 # 1orjA.46.57 read from T0287.t04.many.frag # found chain 1orjA in template set T0287 46 :TMHDFFKQM 1orjA 1058 :RVYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17439 # 1u0fA.46.223 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 46 :TMHDFFKQM 1u0fA 223 :TAKEWFLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17440 # 1jqnA.46.36 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 46 :TMHDFFKQM 1jqnA 37 :TIRKLSKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17441 # 1ow4A.46.98 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 46 :TMHDFFKQM 1ow4A 88 :AVNDCANQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17442 # 1e6iA.46.79 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 46 :TMHDFFKQM 1e6iA 398 :LVFNNCRMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17443 # 1h6kA.46.548 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 46 :TMHDFFKQM 1h6kA 568 :KFHEVFKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17444 # 1bf5A.46.12 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 46 :TMHDFFKQM 1bf5A 148 :NVKDKVMCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17445 # 2acvA.46.434 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 46 :TMHDFFKQM 2acvA 435 :EMKEMSRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17446 # 1i60A.46.87 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 46 :TMHDFFKQM 1i60A 88 :GMMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17447 # 1n1fA.46.120 read from T0287.t04.many.frag # found chain 1n1fA in template set T0287 46 :TMHDFFKQM 1n1fA 121 :VIHDNYDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17448 # 1ail.46.41 read from T0287.t04.many.frag # found chain 1ail in template set T0287 46 :TMHDFFKQM 1ail 42 :SLRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17449 # 1nt2B.46.82 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 46 :TMHDFFKQM 1nt2B 94 :ALEEIDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17450 # 1vjxA.46.56 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 46 :TMHDFFKQM 1vjxA 45 :IHAEIFRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17451 # 2etsA.46.25 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 46 :TMHDFFKQM 2etsA 14 :NMQQNFENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17452 # 1w33A.46.71 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 46 :TMHDFFKQM 1w33A 141 :KLKEILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17453 # 1jeyA.46.519 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 46 :TMHDFFKQM 1jeyA 520 :SLVDEFKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17454 # 1fjgT.46.57 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 46 :TMHDFFKQM 1fjgT 58 :KAESLIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17455 # 1alu.46.122 read from T0287.t04.many.frag # found chain 1alu in template set T0287 46 :TMHDFFKQM 1alu 121 :VLIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17456 # 1gw5S.46.85 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 46 :TMHDFFKQM 1gw5S 86 :NFVEVLNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17457 # 1p4xA.46.109 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 46 :TMHDFFKQM 1p4xA 110 :LFDQIIKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17458 # 1h5uA.46.736 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 46 :TMHDFFKQM 1h5uA 737 :ELRQIIEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17459 # 2ahmA.46.16 read from T0287.t04.many.frag # found chain 2ahmA in template set T0287 46 :TMHDFFKQM 2ahmA 17 :VLLSVLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17460 # 1gqiA.46.620 read from T0287.t04.many.frag # found chain 1gqiA in training set T0287 46 :TMHDFFKQM 1gqiA 625 :AMQRTWDQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17461 # 1qlwA.46.267 read from T0287.t04.many.frag # found chain 1qlwA in training set T0287 46 :TMHDFFKQM 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17462 # 2f6lA.46.45 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 46 :TMHDFFKQM 2f6lA 79 :KLGEDARSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17463 # 1j5sA.46.228 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 46 :TMHDFFKQM 1j5sA 217 :KSHEHFKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17464 # 1qf5A.46.191 read from T0287.t04.many.frag # found chain 1qf5A in template set T0287 46 :TMHDFFKQM 1qf5A 192 :AVADILTSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17465 # 1r8iA.46.134 read from T0287.t04.many.frag # found chain 1r8iA in template set T0287 46 :TMHDFFKQM 1r8iA 159 :DMQALTEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17466 # 1moq.47.199 read from T0287.t04.many.frag # found chain 1moq in training set T0287 47 :MHDFFKQMH 1moq 440 :LPSRIEQML Number of specific fragments extracted= 1 number of extra gaps= 0 total=17467 # 1u0fA.47.224 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 47 :MHDFFKQMH 1u0fA 224 :AKEWFLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17468 # 1ow4A.47.99 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 47 :MHDFFKQMH 1ow4A 89 :VNDCANQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17469 # 1zupA.47.290 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 47 :MHDFFKQMH 1zupA 279 :LEENLSYYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17470 # 1e6iA.47.80 read from T0287.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)H55 (1e6iA)N407 because P (beta_P) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1e6iA 399 :VFNNCRMY Number of specific fragments extracted= 1 number of extra gaps= 1 total=17471 # 1jqnA.47.37 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 47 :MHDFFKQMH 1jqnA 38 :IRKLSKSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17472 # 1h6kA.47.549 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)H48 (1h6kA)H570 because H (helix) conformation "forbidden" or filtered. T0287 47 :M 1h6kA 569 :F T0287 49 :DFFKQMH 1h6kA 571 :EVFKTLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17474 # 1w33A.47.72 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 47 :MHDFFKQMH 1w33A 142 :LKEILEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17475 # 2acvA.47.435 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 47 :MHDFFKQMH 2acvA 436 :MKEMSRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17476 # 1orjA.47.58 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 T0287 47 :MHDFFKQM 1orjA 1059 :VYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17477 # 1ail.47.42 read from T0287.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1ail 43 :LRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17478 # 1nt2B.47.83 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 47 :MHDFFKQMH 1nt2B 95 :LEEIDESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17479 # 1vjxA.47.57 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 47 :MHDFFKQMH 1vjxA 46 :HAEIFRKMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17480 # 1jeyA.47.520 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 47 :MHDFFKQMH 1jeyA 521 :LVDEFKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17481 # 1n1fA.47.121 read from T0287.t04.many.frag # found chain 1n1fA in template set T0287 47 :MHDFFKQMH 1n1fA 122 :IHDNYDQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17482 # 2f6lA.47.46 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 47 :MHDFFKQMH 2f6lA 80 :LGEDARSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17483 # 1bf5A.47.13 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 47 :MHDFFKQMH 1bf5A 149 :VKDKVMCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17484 # 1ajsA.47.311 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 47 :MHDFFKQMH 1ajsA 312 :DPELFHEWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17485 # 2etsA.47.26 read from T0287.t04.many.frag # found chain 2etsA in template set T0287 47 :MHDFFKQMH 2etsA 15 :MQQNFENVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17486 # 1i60A.47.88 read from T0287.t04.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)H55 (1i60A)G97 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1i60A 89 :MMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17487 # 1h5uA.47.737 read from T0287.t04.many.frag # found chain 1h5uA in training set T0287 47 :MHDFFKQMH 1h5uA 738 :LRQIIEQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17488 # 1ei6A.47.220 read from T0287.t04.many.frag # found chain 1ei6A in template set T0287 47 :MHDFFKQMH 1ei6A 222 :MDSYFKRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17489 # 1p4xA.47.110 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 47 :MHDFFKQMH 1p4xA 111 :FDQIIKQFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17490 # 1t98A.47.163 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 47 :MHDFFKQMH 1t98A 164 :VAEIFDSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17491 # 1qlwA.47.268 read from T0287.t04.many.frag # found chain 1qlwA in training set T0287 47 :MHDFFKQMH 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17492 # 1fjgT.47.58 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 47 :MHDFFKQMH 1fjgT 59 :AESLIDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17493 # 1alu.47.123 read from T0287.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 T0287 47 :MHDFFKQM 1alu 122 :LIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17494 # 1hz4A.47.219 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 47 :MHDFFKQMH 1hz4A 218 :VRVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17495 # 1r8iA.47.135 read from T0287.t04.many.frag # found chain 1r8iA in template set T0287 47 :MHDFFKQMH 1r8iA 160 :MQALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17496 # 1wbeA.47.157 read from T0287.t04.many.frag # found chain 1wbeA in template set T0287 47 :MHDFFKQMH 1wbeA 158 :KSDFLKALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17497 # 1moq.48.200 read from T0287.t04.many.frag # found chain 1moq in training set T0287 48 :HDFFKQMHT 1moq 441 :PSRIEQMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17498 # 1h6kA.48.550 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 48 :HDFFKQMHT 1h6kA 570 :HEVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17499 # 1ow4A.48.100 read from T0287.t04.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)H55 (1ow4A)N97 because P (beta_P) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1ow4A 90 :NDCANQV T0287 56 :T 1ow4A 98 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=17501 # 1zupA.48.291 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 48 :HDFFKQMHT 1zupA 280 :EENLSYYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17502 # 1e6iA.48.81 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 48 :HDFFKQMHT 1e6iA 400 :FNNCRMYNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17503 # 1u0fA.48.225 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 48 :HDFFKQMHT 1u0fA 225 :KEWFLEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17504 # 2acvA.48.436 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 48 :HDFFKQMHT 2acvA 437 :KEMSRNAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17505 # 1jqnA.48.38 read from T0287.t04.many.frag # found chain 1jqnA in template set T0287 48 :HDFFKQMHT 1jqnA 39 :RKLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17506 # 1w33A.48.73 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 48 :HDFFKQMHT 1w33A 143 :KEILEILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17507 # 1ail.48.43 read from T0287.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1ail 44 :RGRGSTL T0287 56 :T 1ail 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17509 # 1hz4A.48.220 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1hz4A 219 :RVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=17510 # 2f6lA.48.47 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 48 :HDFFKQMHT 2f6lA 81 :GEDARSQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17511 # 1jeyA.48.521 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 48 :HDFFKQMHT 1jeyA 522 :VDEFKELVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17512 # 1vjxA.48.58 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 48 :HDFFKQMHT 1vjxA 47 :AEIFRKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17513 # 1ajsA.48.312 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 48 :HDFFKQMHT 1ajsA 313 :PELFHEWTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17514 # 1orjA.48.59 read from T0287.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)S1068 T0287 48 :HDFFKQM 1orjA 1060 :YDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17515 # 1ei6A.48.221 read from T0287.t04.many.frag # found chain 1ei6A in template set T0287 48 :HDFFKQMHT 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17516 # 1alu.48.124 read from T0287.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 T0287 48 :HDFFKQM 1alu 123 :IQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17517 # 1nt2B.48.84 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 48 :HDFFKQMHT 1nt2B 96 :EEIDESINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17518 # 1t98A.48.164 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 48 :HDFFKQMHT 1t98A 165 :AEIFDSIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17519 # 1wer.48.292 read from T0287.t04.many.frag # found chain 1wer in training set T0287 48 :HDFFKQMHT 1wer 1006 :SDELRTLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17520 # 1g5tA.48.108 read from T0287.t04.many.frag # found chain 1g5tA in training set T0287 48 :HDFFKQMHT 1g5tA 109 :WQHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17521 # 1bf5A.48.14 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 48 :HDFFKQMHT 1bf5A 150 :KDKVMCIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17522 # 1nd4A.48.116 read from T0287.t04.many.frag # found chain 1nd4A in template set T0287 48 :HDFFKQMHT 1nd4A 117 :ADAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17523 # 1zx4A.48.72 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1zx4A 214 :CAVGDEM T0287 56 :T 1zx4A 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=17525 # 1jixA.48.327 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 48 :HDFFKQMHT 1jixA 328 :HDILNKTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17526 # 1r8iA.48.136 read from T0287.t04.many.frag # found chain 1r8iA in template set Warning: unaligning (T0287)T56 (1r8iA)S169 because T (delta_L) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1r8iA 161 :QALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17527 # 1tukA.48.31 read from T0287.t04.many.frag # found chain 1tukA in template set Warning: unaligning (T0287)F50 (1tukA)C34 because G (3-10) conformation "forbidden" or filtered. T0287 48 :HD 1tukA 32 :QG T0287 51 :FKQMHT 1tukA 35 :FCQYAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17529 # 1p4xA.48.111 read from T0287.t04.many.frag # found chain 1p4xA in template set T0287 48 :HDFFKQMHT 1p4xA 112 :DQIIKQFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17530 # 1fjgT.48.59 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 48 :HDFFKQMHT 1fjgT 60 :ESLIDKAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17531 # 1moq.49.201 read from T0287.t04.many.frag # found chain 1moq in training set T0287 49 :DFFKQMHTN 1moq 442 :SRIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17532 # 1h6kA.49.551 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)N57 (1h6kA)S579 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1h6kA 571 :EVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17533 # 1e6iA.49.82 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 49 :DFFKQMHTN 1e6iA 401 :NNCRMYNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17534 # 1hz4A.49.221 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 49 :DFFKQMHTN 1hz4A 220 :VIYWQMTGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17535 # 1zupA.49.292 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 49 :DFFKQMHTN 1zupA 281 :ENLSYYLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17536 # 1ow4A.49.101 read from T0287.t04.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1ow4A 91 :DCANQVN T0287 57 :N 1ow4A 99 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=17538 # 2acvA.49.437 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 49 :DFFKQMHTN 2acvA 438 :EMSRNAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17539 # 1ail.49.44 read from T0287.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1ail 45 :GRGSTL T0287 56 :TN 1ail 52 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17541 # 2f6lA.49.48 read from T0287.t04.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)M54 (2f6lA)Q87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQ 2f6lA 82 :EDARS T0287 56 :TN 2f6lA 89 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=17543 # 1zx4A.49.73 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 49 :DFFKQMHTN 1zx4A 215 :AVGDEMGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17544 # 1w33A.49.74 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 49 :DFFKQMHTN 1w33A 144 :EILEILKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17545 # 1jqnA.49.39 read from T0287.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1jqnA 40 :KLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17546 # 1u0fA.49.226 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 49 :DFFKQMHTN 1u0fA 226 :EWFLEAAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17547 # 1sdiA.49.93 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 49 :DFFKQMHTN 1sdiA 94 :VLERKLSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17548 # 1nd4A.49.117 read from T0287.t04.many.frag # found chain 1nd4A in template set T0287 49 :DFFKQMHTN 1nd4A 118 :DAMRRLHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17549 # 1wer.49.293 read from T0287.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1wer 1007 :DELRTLSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=17550 # 1jeyA.49.522 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 49 :DFFKQMHTN 1jeyA 523 :DEFKELVYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17551 # 1ajsA.49.313 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 49 :DFFKQMHTN 1ajsA 314 :ELFHEWTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17552 # 1r71A.49.56 read from T0287.t04.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)H55 (1r71A)G179 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1r71A)S181 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1r71A 173 :DIAKEI T0287 56 :T 1r71A 180 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=17554 # 1nt2B.49.85 read from T0287.t04.many.frag # found chain 1nt2B in template set T0287 49 :DFFKQMHTN 1nt2B 97 :EIDESINML Number of specific fragments extracted= 1 number of extra gaps= 0 total=17555 # 1tukA.49.32 read from T0287.t04.many.frag # found chain 1tukA in template set T0287 49 :DFFKQMHTN 1tukA 33 :GCFCQYAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17556 # 1alu.49.125 read from T0287.t04.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1alu)L133 T0287 49 :DFFKQM 1alu 124 :QFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17557 # 1ei6A.49.222 read from T0287.t04.many.frag # found chain 1ei6A in template set T0287 49 :DFFKQMHTN 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17558 # 1t98A.49.165 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 49 :DFFKQMHTN 1t98A 166 :EIFDSIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17559 # 1g5tA.49.109 read from T0287.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0287)N57 (1g5tA)D118 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1g5tA 110 :QHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17560 # 1k78A.49.52 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1k78A 53 :DISRQLRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17561 # 1mgtA.49.113 read from T0287.t04.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1mgtA 114 :DLAKAL T0287 56 :TN 1mgtA 121 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17563 # 1jixA.49.328 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 49 :DFFKQMHTN 1jixA 329 :DILNKTRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17564 # 1vjxA.49.59 read from T0287.t04.many.frag # found chain 1vjxA in template set T0287 49 :DFFKQMHTN 1vjxA 48 :EIFRKMSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17565 # 1cr1A.49.109 read from T0287.t04.many.frag # found chain 1cr1A in template set T0287 49 :DFFKQMHTN 1cr1A 380 :QWFDELFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17566 # 1moq.50.202 read from T0287.t04.many.frag # found chain 1moq in training set T0287 50 :FFKQMHTNK 1moq 443 :RIEQMLSQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17567 # 1hz4A.50.222 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1hz4A 221 :IYWQMT T0287 57 :NK 1hz4A 228 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17569 # 1e6iA.50.83 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 50 :FFKQMHTNK 1e6iA 402 :NCRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17570 # 1zupA.50.293 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1zupA 282 :NLSYYLT T0287 58 :K 1zupA 290 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=17572 # 2acvA.50.438 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 50 :FFKQMHTN 2acvA 439 :MSRNAVVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17573 # 1ow4A.50.102 read from T0287.t04.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)H55 (1ow4A)N97 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQM 1ow4A 92 :CANQV T0287 56 :TNK 1ow4A 98 :GAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17575 # 1h6kA.50.552 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)N57 (1h6kA)S579 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1h6kA 572 :VFKTLAE T0287 58 :K 1h6kA 580 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=17577 # 2f6lA.50.49 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 50 :FFKQMHTNK 2f6lA 83 :DARSQHIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17578 # 1w33A.50.75 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 50 :FFKQMHTNK 1w33A 145 :ILEILKKNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17579 # 2cygA.50.57 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)F50 (2cygA)D86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 51 :FKQM 2cygA 87 :VQSL T0287 57 :NK 2cygA 93 :NP Number of specific fragments extracted= 2 number of extra gaps= 2 total=17581 # 1zx4A.50.74 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1zx4A 216 :VGDEM T0287 57 :NK 1zx4A 223 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17583 # 1ail.50.45 read from T0287.t04.many.frag # found chain 1ail in template set T0287 50 :FFKQMHTNK 1ail 46 :RGSTLGLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17584 # 1sdiA.50.94 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1sdiA 95 :LERKLSS T0287 58 :K 1sdiA 103 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=17586 # 1wer.50.294 read from T0287.t04.many.frag # found chain 1wer in training set T0287 50 :FFKQMHTNK 1wer 1008 :ELRTLSNER Number of specific fragments extracted= 1 number of extra gaps= 0 total=17587 # 1u0fA.50.227 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 50 :FFKQMHTNK 1u0fA 227 :WFLEAAKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17588 # 1z7lA.50.46 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 T0287 50 :FFKQMHTN 1z7lA 662 :NVNQYLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17589 # 1jqnA.50.40 read from T0287.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1jqnA 41 :LSKSSRA T0287 58 :K 1jqnA 49 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=17591 # 1nd4A.50.118 read from T0287.t04.many.frag # found chain 1nd4A in template set T0287 50 :FFKQMHTNK 1nd4A 119 :AMRRLHTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17592 # 1tukA.50.33 read from T0287.t04.many.frag # found chain 1tukA in template set Warning: unaligning (T0287)F50 (1tukA)C34 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1tukA 35 :FCQYAKDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=17593 # 1jeyA.50.523 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 50 :FFKQMHTNK 1jeyA 524 :EFKELVYPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17594 # 1k78A.50.53 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1k78A 54 :ISRQL T0287 56 :TNK 1k78A 60 :VSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=17596 # 1tu9A.50.11 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 50 :FFKQMHTNK 1tu9A 10 :SYGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=17597 # 1j2zA.50.212 read from T0287.t04.many.frag # found chain 1j2zA in template set T0287 50 :FFKQMHTNK 1j2zA 213 :LYKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17598 # 1sw5B.50.248 read from T0287.t04.many.frag # found chain 1sw5B in template set T0287 50 :FFKQMHTNK 1sw5B 249 :LNYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17599 # 1r71A.50.57 read from T0287.t04.many.frag # found chain 1r71A in template set T0287 50 :FFKQMHTNK 1r71A 174 :IAKEIGKSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17600 # 1jixA.50.329 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 50 :FFKQMHTNK 1jixA 330 :ILNKTRAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17601 # 1g5tA.50.110 read from T0287.t04.many.frag # found chain 1g5tA in training set T0287 50 :FFKQMHTNK 1g5tA 111 :HGKRMLADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17602 # 1ajsA.50.314 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 50 :FFKQMHTNK 1ajsA 315 :LFHEWTGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17603 # 1mgtA.50.114 read from T0287.t04.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1mgtA 115 :LAKAL T0287 56 :TNK 1mgtA 121 :TSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17605 # 2cwyA.50.47 read from T0287.t04.many.frag # found chain 2cwyA in template set T0287 50 :FFKQMHTNK 2cwyA 48 :ALHQRRLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17606 # 1moq.51.203 read from T0287.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1moq 444 :IEQMLSQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17607 # 1hz4A.51.223 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1hz4A 222 :YWQMT T0287 57 :NKG 1hz4A 228 :DKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17609 # 2cygA.51.58 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 51 :FKQM 2cygA 87 :VQSL T0287 57 :NKG 2cygA 93 :NPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17611 # 1wer.51.295 read from T0287.t04.many.frag # found chain 1wer in training set T0287 51 :FKQMHTNKG 1wer 1009 :LRTLSNERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17612 # 1w33A.51.76 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 51 :FKQMHTNKG 1w33A 146 :LEILKKNSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17613 # 2acvA.51.439 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 2acvA 440 :SRNAVVD T0287 59 :G 2acvA 448 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=17615 # 1e6iA.51.84 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 51 :FKQMHTNKG 1e6iA 403 :CRMYNGENT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17616 # 1sdiA.51.95 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 51 :FKQMHTNKG 1sdiA 96 :ERKLSSAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17617 # 1zupA.51.294 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 51 :FKQMHTNKG 1zupA 283 :LSYYLTDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17618 # 1z7lA.51.47 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 51 :FKQMHT 1z7lA 663 :VNQYLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=17619 # 1ow4A.51.103 read from T0287.t04.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)H55 (1ow4A)N97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1ow4A)Y100 because D (zeta) conformation "forbidden" or filtered. T0287 51 :FKQM 1ow4A 93 :ANQV T0287 57 :N 1ow4A 99 :A T0287 59 :G 1ow4A 101 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=17622 # 1zx4A.51.75 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1zx4A 217 :GDEMG T0287 57 :NKG 1zx4A 223 :KNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17624 # 1u0fA.51.228 read from T0287.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1u0fA 228 :FLEAA T0287 57 :NKG 1u0fA 234 :DPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17626 # 1tu9A.51.12 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 51 :FKQMHTNKG 1tu9A 11 :YGRCCASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17627 # 1he1A.51.86 read from T0287.t04.many.frag # found chain 1he1A in template set T0287 51 :FKQMHTNKG 1he1A 181 :LQQWGTTGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17628 # 1h6kA.51.553 read from T0287.t04.many.frag # found chain 1h6kA in template set T0287 51 :FKQMHTNKG 1h6kA 573 :FKTLAESDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17629 # 2f6lA.51.50 read from T0287.t04.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)M54 (2f6lA)Q87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQ 2f6lA 84 :ARS T0287 56 :T 2f6lA 89 :I T0287 58 :KG 2f6lA 91 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17632 # 1k78A.51.54 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 51 :FKQM 1k78A 55 :SRQL T0287 56 :TNK 1k78A 60 :VSH Number of specific fragments extracted= 2 number of extra gaps= 2 total=17634 # 1j2zA.51.213 read from T0287.t04.many.frag # found chain 1j2zA in template set Warning: unaligning (T0287)G59 (1j2zA)P222 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1j2zA 214 :YKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17635 # 1q79A.51.347 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 51 :FKQMHTNKG 1q79A 348 :TDEILLSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17636 # 1tukA.51.34 read from T0287.t04.many.frag # found chain 1tukA in template set Warning: unaligning (T0287)N57 (1tukA)D41 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1tukA 35 :FCQYAK T0287 58 :KG 1tukA 42 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17638 # 1n69A.51.16 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)T56 (1n69A)T20 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMH 1n69A 15 :QTAVR T0287 57 :NKG 1n69A 21 :NST Number of specific fragments extracted= 2 number of extra gaps= 1 total=17640 # 1ail.51.46 read from T0287.t04.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 1ail 47 :GSTL T0287 56 :TNKG 1ail 52 :LNIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17642 # 1ajsA.51.315 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 51 :FKQMHTNKG 1ajsA 316 :FHEWTGNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17643 # 2bmaA.51.35 read from T0287.t04.many.frag # found chain 2bmaA in template set T0287 51 :FKQMHTNKG 2bmaA 11 :VMKLDPNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17644 # 1jqnA.51.41 read from T0287.t04.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1jqnA 42 :SKSSRA T0287 58 :KG 1jqnA 49 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=17646 # 1sw5B.51.249 read from T0287.t04.many.frag # found chain 1sw5B in template set T0287 51 :FKQMHTNKG 1sw5B 250 :NYQYDVEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17647 # 1jeyA.51.524 read from T0287.t04.many.frag # found chain 1jeyA in template set T0287 51 :FKQMHTNKG 1jeyA 525 :FKELVYPPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17648 # 1z21A.51.62 read from T0287.t04.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1z21A 100 :LQQFDSF T0287 59 :G 1z21A 108 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=17650 # 1jixA.51.330 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 51 :FKQMHTNKG 1jixA 331 :LNKTRAKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17651 # 2cygA.52.59 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQM 2cygA 88 :QSL T0287 58 :KGA 2cygA 94 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17653 # 1sdiA.52.96 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 52 :KQMHTNKGA 1sdiA 97 :RKLSSAKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17654 # 1hz4A.52.224 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1hz4A 223 :WQMT T0287 57 :NKGA 1hz4A 228 :DKAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17656 # 1wer.52.296 read from T0287.t04.many.frag # found chain 1wer in training set T0287 52 :KQMHTNKGA 1wer 1010 :RTLSNERGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17657 # 1zupA.52.295 read from T0287.t04.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHT 1zupA 284 :SYYLT T0287 58 :KGA 1zupA 290 :KNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17659 # 1moq.52.204 read from T0287.t04.many.frag # found chain 1moq in training set T0287 52 :KQMHTNKGA 1moq 445 :EQMLSQDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17660 # 2acvA.52.440 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 52 :KQMHTNKGA 2acvA 441 :RNAVVDGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17661 # 1z7lA.52.48 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)H55 (1z7lA)L667 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 52 :KQM 1z7lA 664 :NQY T0287 56 :TN 1z7lA 668 :TD T0287 60 :A 1z7lA 672 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=17664 # 1w33A.52.77 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 52 :KQMHTNKGA 1w33A 147 :EILKKNSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17665 # 1tu9A.52.13 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)N57 (1tu9A)S17 because E (beta_S) conformation "forbidden" or filtered. T0287 52 :KQMHT 1tu9A 12 :GRCCA T0287 58 :KGA 1tu9A 18 :TGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17667 # 1e6iA.52.85 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 52 :KQMHTNKGA 1e6iA 404 :RMYNGENTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17668 # 1he1A.52.87 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1he1A 182 :QQWGTT T0287 59 :GA 1he1A 189 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17670 # 1u0fA.52.229 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 52 :KQMHTNKGA 1u0fA 229 :LEAAKDPSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17671 # 1zx4A.52.76 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 1zx4A 218 :DEM T0287 57 :NKGA 1zx4A 223 :KNLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17673 # 1k78A.52.55 read from T0287.t04.many.frag # found chain 1k78A in template set T0287 52 :KQMHTNKGA 1k78A 56 :RQLRVSHGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17674 # 1q79A.52.348 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 52 :KQMHTNKGA 1q79A 349 :DEILLSKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17675 # 2f6lA.52.51 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 52 :KQMHTNKGA 2f6lA 85 :RSQHIDPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17676 # 1fipA.52.78 read from T0287.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)G59 (1fipA)G86 because H (helix) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1fipA 79 :LMMGINR T0287 60 :A 1fipA 87 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=17678 # 1sw5B.52.250 read from T0287.t04.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)G59 (1sw5B)K258 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1sw5B 251 :YQYDVEK T0287 60 :A 1sw5B 259 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=17680 # 1w9cA.52.195 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 52 :KQMHTNKGA 1w9cA 902 :QNVAQEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17681 # 1y0zA.52.44 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 52 :KQMHTNKGA 1y0zA 45 :QTIKTQKHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17682 # 1n69A.52.17 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)G59 (1n69A)T23 because G (3-10) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1n69A 16 :TAVRTNS T0287 60 :A 1n69A 24 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=17684 # 1jixA.52.331 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 52 :KQMHTNKGA 1jixA 332 :NKTRAKKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17685 # 1ykjA.52.368 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 52 :KQMHTNKGA 1ykjA 1369 :EYYLGSEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17686 # 2dpmA.52.71 read from T0287.t04.many.frag # found chain 2dpmA in training set T0287 52 :KQMHTNKGA 2dpmA 72 :QQIKDNPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17687 # 1ail.52.47 read from T0287.t04.many.frag # found chain 1ail in template set T0287 52 :KQMHTNKGA 1ail 48 :STLGLNIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17688 # 2a6sA.52.13 read from T0287.t04.many.frag # found chain 2a6sA in template set Warning: unaligning (T0287)K58 (2a6sA)D20 because D (zeta) conformation "forbidden" or filtered. T0287 52 :KQMHTN 2a6sA 14 :LYWQET T0287 59 :GA 2a6sA 21 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17690 # 1h6kA.52.554 read from T0287.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0287)N57 (1h6kA)S579 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHT 1h6kA 574 :KTLAE T0287 58 :KGA 1h6kA 580 :DEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17692 # 1ow4A.52.104 read from T0287.t04.many.frag # found chain 1ow4A in training set T0287 52 :KQMHTNKGA 1ow4A 94 :NQVNGAYPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17693 # 1t98A.52.168 read from T0287.t04.many.frag # found chain 1t98A in template set T0287 52 :KQMHTNKGA 1t98A 169 :DSIDLTQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17694 # 1sdiA.53.97 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 53 :QMHTNKGAL 1sdiA 98 :KLSSAKGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17695 # 2cygA.53.60 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QM 2cygA 89 :SL T0287 58 :KGAL 2cygA 94 :PSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17697 # 1zupA.53.296 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 53 :QMHTNKGAL 1zupA 285 :YYLTDKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17698 # 1wer.53.297 read from T0287.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHT 1wer 1011 :TLSN T0287 58 :KGAL 1wer 1016 :RGAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17700 # 1hz4A.53.225 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 53 :QMHTNKGAL 1hz4A 224 :QMTGDKAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17701 # 1z7lA.53.49 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 53 :QMHTN 1z7lA 665 :QYLTD T0287 60 :AL 1z7lA 672 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17703 # 1tu9A.53.14 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 53 :QMHTNKGAL 1tu9A 13 :RCCASTGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17704 # 2acvA.53.441 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 53 :QMHTNKGAL 2acvA 442 :NAVVDGGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17705 # 1moq.53.205 read from T0287.t04.many.frag # found chain 1moq in training set T0287 53 :QMHTNKGAL 1moq 446 :QMLSQDKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17706 # 1w33A.53.78 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 53 :QMHTNKGAL 1w33A 148 :ILKKNSEHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17707 # 1he1A.53.88 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QMHTN 1he1A 183 :QWGTT T0287 59 :GAL 1he1A 189 :GAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17709 # 1zx4A.53.77 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 53 :QM 1zx4A 219 :EM T0287 57 :NKGAL 1zx4A 223 :KNLEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17711 # 1k78A.53.56 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)M54 (1k78A)L58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 53 :Q 1k78A 57 :Q T0287 55 :HTNK 1k78A 59 :RVSH T0287 60 :AL 1k78A 64 :CV Number of specific fragments extracted= 3 number of extra gaps= 2 total=17714 # 2f6lA.53.52 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 53 :QMHTNKGAL 2f6lA 86 :SQHIDPDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17715 # 1e6iA.53.86 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 53 :QMHTNKGAL 1e6iA 405 :MYNGENTSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17716 # 1u0fA.53.230 read from T0287.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1u0fA 230 :EAA T0287 57 :NKGAL 1u0fA 234 :DPSAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17718 # 1ykjA.53.369 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 53 :QMHTNKGAL 1ykjA 1370 :YYLGSEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17719 # 1y0zA.53.45 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 53 :QMHTNKGAL 1y0zA 46 :TIKTQKHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17720 # 1urjA.53.604 read from T0287.t04.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)T56 (1urjA)T608 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMH 1urjA 605 :TII T0287 57 :NKGAL 1urjA 609 :NREAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17722 # 2bnxA.53.245 read from T0287.t04.many.frag # found chain 2bnxA in template set T0287 53 :QMHTNKGAL 2bnxA 376 :MEMDDFGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17723 # 1w9cA.53.196 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 53 :QMHTNKGAL 1w9cA 903 :NVAQEEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17724 # 1q79A.53.349 read from T0287.t04.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N57 (1q79A)S354 because L (left) conformation "forbidden" or filtered. T0287 53 :QMHT 1q79A 350 :EILL T0287 58 :KGAL 1q79A 355 :KAEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=17726 # 1fipA.53.79 read from T0287.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)N57 (1fipA)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHT 1fipA 80 :MMGI T0287 58 :KGAL 1fipA 85 :RGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17728 # 1tffA.53.119 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 53 :QMHTNKGAL 1tffA 120 :KVFNDQSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17729 # 1jixA.53.332 read from T0287.t04.many.frag # found chain 1jixA in training set T0287 53 :QMHTNKGAL 1jixA 333 :KTRAKKAEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17730 # 1dk0A.53.138 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1dk0A)T144 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1dk0A)G145 because H (helix) conformation "forbidden" or filtered. T0287 53 :QMH 1dk0A 139 :LMS T0287 57 :N 1dk0A 143 :D T0287 60 :AL 1dk0A 146 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=17733 # 1tzvA.53.52 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 53 :QMHTNKGAL 1tzvA 53 :GIKENLSMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17734 # 1b25A.53.375 read from T0287.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0287)N57 (1b25A)R380 because L (left) conformation "forbidden" or filtered. T0287 53 :QMHT 1b25A 376 :DIAY T0287 58 :KGAL 1b25A 381 :KGEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17736 # 2dpmA.53.72 read from T0287.t04.many.frag # found chain 2dpmA in training set T0287 53 :QMHTNKGAL 2dpmA 73 :QIKDNPQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17737 # 1z21A.53.64 read from T0287.t04.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)N57 (1z21A)F106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 53 :QMHT 1z21A 102 :QFDS T0287 59 :GAL 1z21A 108 :KRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=17739 # 1sdiA.54.98 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHTN 1sdiA 99 :LSSA T0287 59 :GALD 1sdiA 104 :GALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17741 # 2cygA.54.61 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 2cygA 90 :L T0287 58 :KGALD 2cygA 94 :PSAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17743 # 1zupA.54.297 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 54 :MHTNKGALD 1zupA 286 :YLTDKNYMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17744 # 1wer.54.298 read from T0287.t04.many.frag # found chain 1wer in training set T0287 54 :MHTNKGALD 1wer 1012 :LSNERGAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17745 # 1tu9A.54.15 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 54 :MHTNKGALD 1tu9A 14 :CCASTGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17746 # 1z7lA.54.50 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 54 :MHTN 1z7lA 666 :YLTD T0287 60 :ALD 1z7lA 672 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17748 # 1hz4A.54.226 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1hz4A 225 :MT T0287 57 :NKGALD 1hz4A 228 :DKAAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17750 # 1zx4A.54.78 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1zx4A 220 :M T0287 57 :NKGALD 1zx4A 223 :KNLEFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17752 # 1k78A.54.57 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)M54 (1k78A)L58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALD 1k78A 60 :VSHGCVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17753 # 1dk0A.54.139 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)K58 (1dk0A)T144 because G (3-10) conformation "forbidden" or filtered. T0287 54 :MHTN 1dk0A 140 :MSGD T0287 59 :GALD 1dk0A 145 :GALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17755 # 2acvA.54.442 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)G59 (2acvA)G448 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHTNK 2acvA 443 :AVVDG T0287 60 :ALD 2acvA 449 :SSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17757 # 1he1A.54.89 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :MHTN 1he1A 184 :WGTT T0287 59 :GALD 1he1A 189 :GAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17759 # 2f6lA.54.53 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 54 :MHTNKGALD 2f6lA 87 :QHIDPDYVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17760 # 1w33A.54.79 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 54 :MHTNKGALD 1w33A 149 :LKKNSEHYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17761 # 1zs4A.54.33 read from T0287.t04.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)H55 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zs4A)V35 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :M 1zs4A 33 :V T0287 57 :NKGALD 1zs4A 36 :DKSQIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17763 # 2bnxA.54.246 read from T0287.t04.many.frag # found chain 2bnxA in template set T0287 54 :MHTNKGALD 2bnxA 377 :EMDDFGEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17764 # 1y0zA.54.46 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 54 :MHTNKGALD 1y0zA 47 :IKTQKHYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17765 # 1fipA.54.80 read from T0287.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)N57 (1fipA)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :MHT 1fipA 81 :MGI T0287 58 :KGALD 1fipA 85 :RGTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17767 # 1ho8A.54.254 read from T0287.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N57 (1ho8A)N256 because D (zeta) conformation "forbidden" or filtered. T0287 54 :MHT 1ho8A 253 :LTF T0287 58 :KGALD 1ho8A 257 :PVFAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17769 # 1xpjA.54.50 read from T0287.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 54 :MHTN 1xpjA 51 :MRTY T0287 59 :GALD 1xpjA 56 :GNVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17771 # 1ykjA.54.370 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 54 :MHTNKGALD 1ykjA 1371 :YLGSEAGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17772 # 1e6iA.54.87 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 54 :MHTNKGALD 1e6iA 406 :YNGENTSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17773 # 1moq.54.206 read from T0287.t04.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 54 :MHTNK 1moq 447 :MLSQD T0287 60 :ALD 1moq 453 :RIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17775 # 1tffA.54.120 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 54 :MHTNKGALD 1tffA 121 :VFNDQSASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17776 # 1cxzB.54.53 read from T0287.t04.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)H55 (1cxzB)G67 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1cxzB 66 :L T0287 56 :TNKGALD 1cxzB 68 :RSLGPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17778 # 1w9cA.54.197 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 54 :MHTNKGALD 1w9cA 904 :VAQEEAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17779 # 1cg5B.54.90 read from T0287.t04.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)H55 (1cg5B)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1cg5B)D94 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 1cg5B 91 :I T0287 56 :T 1cg5B 93 :V T0287 58 :KGALD 1cg5B 95 :TQNFK Number of specific fragments extracted= 3 number of extra gaps= 2 total=17782 # 1j75A.54.34 read from T0287.t04.many.frag # found chain 1j75A in template set T0287 54 :MHTNKGALD 1j75A 138 :CQVPKKTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17783 # 1z21A.54.65 read from T0287.t04.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :MHTN 1z21A 103 :FDSF T0287 59 :GALD 1z21A 108 :KRWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17785 # 1u0fA.54.231 read from T0287.t04.many.frag # found chain 1u0fA in training set T0287 54 :MHTNKGALD 1u0fA 231 :AAKDPSAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17786 # 1sdiA.55.99 read from T0287.t04.many.frag # found chain 1sdiA in training set T0287 55 :HTNKGALDK 1sdiA 100 :SSAKGALDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17787 # 2cygA.55.62 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDK 2cygA 93 :NPSAAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17788 # 1tu9A.55.16 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 55 :HTNKGALDK 1tu9A 15 :CASTGFFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17789 # 1wer.55.299 read from T0287.t04.many.frag # found chain 1wer in training set T0287 55 :HTNKGALDK 1wer 1013 :SNERGAQQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17790 # 1zupA.55.298 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 55 :HTNKGALDK 1zupA 287 :LTDKNYMNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17791 # 1hz4A.55.227 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1hz4A 226 :T T0287 57 :NKGALDK 1hz4A 228 :DKAAAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17793 # 1z7lA.55.51 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 55 :HTN 1z7lA 667 :LTD T0287 60 :ALDK 1z7lA 672 :FVER Number of specific fragments extracted= 2 number of extra gaps= 1 total=17795 # 1dk0A.55.140 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1dk0A 141 :S T0287 57 :NKGALDK 1dk0A 143 :DTGALET Number of specific fragments extracted= 2 number of extra gaps= 1 total=17797 # 1zx4A.55.79 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1zx4A 221 :G T0287 57 :NKGALDK 1zx4A 223 :KNLEFDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17799 # 1k78A.55.58 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 56 :T 1k78A 60 :V T0287 58 :K 1k78A 62 :H T0287 60 :ALDK 1k78A 64 :CVSK Number of specific fragments extracted= 3 number of extra gaps= 3 total=17802 # 2acvA.55.443 read from T0287.t04.many.frag # found chain 2acvA in template set T0287 55 :HTNKGALDK 2acvA 444 :VVDGGSSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17803 # 1zc6A.55.221 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 55 :HTNKGALDK 1zc6A 222 :ARVDPEADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17804 # 2bnxA.55.247 read from T0287.t04.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)G59 (2bnxA)G382 because H (helix) conformation "forbidden" or filtered. T0287 55 :HTNK 2bnxA 378 :MDDF T0287 60 :ALDK 2bnxA 383 :EVFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17806 # 1he1A.55.90 read from T0287.t04.many.frag # found chain 1he1A in template set T0287 55 :HTNKGALDK 1he1A 185 :GTTGGAASQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17807 # 1e6iA.55.88 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 55 :HTNKGALDK 1e6iA 407 :NGENTSYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17808 # 1cxzB.55.54 read from T0287.t04.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)H55 (1cxzB)G67 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1cxzB 68 :RSLGPVEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17809 # 1xpjA.55.51 read from T0287.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 55 :HTN 1xpjA 52 :RTY T0287 59 :GALDK 1xpjA 56 :GNVGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17811 # 1cg5B.55.91 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 55 :HTNKGALDK 1cg5B 92 :GVDTQNFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17812 # 1zs4A.55.34 read from T0287.t04.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)H55 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zs4A)V35 because Y (epsilon') conformation "forbidden" or filtered. T0287 57 :NKGALDK 1zs4A 36 :DKSQISR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17813 # 1tffA.55.121 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 55 :HTNKGALDK 1tffA 122 :FNDQSASDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17814 # 2f6lA.55.54 read from T0287.t04.many.frag # found chain 2f6lA in template set T0287 55 :HTNKGALDK 2f6lA 88 :HIDPDYVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17815 # 1y6xA.55.34 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 55 :HTNKGALDK 1y6xA 35 :DGGVHALGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17816 # 1j75A.55.35 read from T0287.t04.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)H55 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1j75A 140 :VPKKTLNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17817 # 1w33A.55.80 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 55 :HTNKGALDK 1w33A 150 :KKNSEHYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17818 # 1ho8A.55.255 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 55 :HTNKGALDK 1ho8A 254 :TFNPVFANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17819 # 1ykjA.55.371 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 55 :HTNKGALDK 1ykjA 1372 :LGSEAGLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17820 # 1urjA.55.606 read from T0287.t04.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)N57 (1urjA)N609 because E (beta_S) conformation "forbidden" or filtered. T0287 55 :HT 1urjA 607 :IT T0287 58 :KGALDK 1urjA 610 :REALHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17822 # 1z21A.55.66 read from T0287.t04.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 55 :HTN 1z21A 104 :DSF T0287 59 :GALDK 1z21A 108 :KRWEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17824 # 1fipA.55.81 read from T0287.t04.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1fipA 83 :INRGTLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17825 # 1ikpA.55.301 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 55 :HTNKGALDK 1ikpA 302 :RLSWNQVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17826 # 1sdiA.56.100 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1sdiA 101 :S T0287 58 :KGALDKV 1sdiA 103 :KGALDTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17828 # 1tu9A.56.17 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 56 :TNKGALDKV 1tu9A 16 :ASTGFFDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17829 # 2cygA.56.63 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDKV 2cygA 93 :NPSAAGDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=17830 # 1wer.56.300 read from T0287.t04.many.frag # found chain 1wer in training set T0287 56 :TNKGALDKV 1wer 1014 :NERGAQQHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17831 # 1dk0A.56.141 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1dk0A 143 :DTGALETA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17832 # 1zc6A.56.222 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 56 :TNKGALDKV 1zc6A 223 :RVDPEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17833 # 1zupA.56.299 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 56 :TNKGALDKV 1zupA 288 :TDKNYMNTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17834 # 1xpjA.56.52 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 56 :TNKGALDKV 1xpjA 53 :TYEGNVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17835 # 1hz4A.56.228 read from T0287.t04.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1hz4A 228 :DKAAAANW Number of specific fragments extracted= 1 number of extra gaps= 1 total=17836 # 1ikpA.56.302 read from T0287.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)N57 (1ikpA)S304 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1ikpA)Q307 because G (3-10) conformation "forbidden" or filtered. T0287 56 :T 1ikpA 303 :L T0287 58 :KG 1ikpA 305 :WN T0287 61 :LDKV 1ikpA 308 :VDQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=17839 # 1k78A.56.59 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :T 1k78A 60 :V T0287 58 :KGALDKV 1k78A 62 :HGCVSKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17841 # 2bnxA.56.248 read from T0287.t04.many.frag # found chain 2bnxA in template set T0287 56 :TNKGALDKV 2bnxA 379 :DDFGEVFQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17842 # 1z7lA.56.52 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 56 :TN 1z7lA 668 :TD T0287 60 :ALDKV 1z7lA 672 :FVERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17844 # 1zx4A.56.80 read from T0287.t04.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1zx4A 223 :KNLEFDQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17845 # 1q2lA.56.840 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TNK 1q2lA 864 :QAP T0287 61 :LDKV 1q2lA 869 :LGEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17847 # 1cxzB.56.55 read from T0287.t04.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)K58 (1cxzB)L70 because G (3-10) conformation "forbidden" or filtered. T0287 56 :TN 1cxzB 68 :RS T0287 59 :GALDKV 1cxzB 71 :GPVELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17849 # 1y6xA.56.35 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 56 :TNKGALDKV 1y6xA 36 :GGVHALGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17850 # 1j75A.56.36 read from T0287.t04.many.frag # found chain 1j75A in template set T0287 56 :TNKGALDKV 1j75A 140 :VPKKTLNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17851 # 1zs4A.56.35 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 56 :TNKGALDKV 1zs4A 35 :VDKSQISRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17852 # 1ykjA.56.372 read from T0287.t04.many.frag # found chain 1ykjA in template set Warning: unaligning (T0287)N57 (1ykjA)S1374 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 1ykjA 1373 :G T0287 58 :KGALDKV 1ykjA 1375 :EAGLATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17854 # 1tzvA.56.55 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 56 :TNKGALDKV 1tzvA 56 :ENLSMIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17855 # 1e6iA.56.89 read from T0287.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)K58 (1e6iA)N410 because G (3-10) conformation "forbidden" or filtered. T0287 56 :TN 1e6iA 408 :GE T0287 59 :GALDKV 1e6iA 411 :TSYYKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17857 # 1cg5B.56.92 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 56 :TNKGALDKV 1cg5B 93 :VDTQNFKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17858 # 2acvA.56.444 read from T0287.t04.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TN 2acvA 445 :VD T0287 59 :GALDKV 2acvA 448 :GSSLIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17860 # 1he1A.56.91 read from T0287.t04.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TN 1he1A 186 :TT T0287 59 :GALDKV 1he1A 189 :GAASQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17862 # 2aqlA.56.58 read from T0287.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKV 2aqlA 212 :YAVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17863 # 1tffA.56.122 read from T0287.t04.many.frag # found chain 1tffA in template set T0287 56 :TNKGALDKV 1tffA 123 :NDQSASDHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17864 # 1z21A.56.67 read from T0287.t04.many.frag # found chain 1z21A in template set T0287 56 :TNKGALDKV 1z21A 105 :SFGKRWEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17865 # 1qoyA.56.216 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 56 :TNKGALDKV 1qoyA 202 :VVEGKLIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17866 # 1w33A.56.81 read from T0287.t04.many.frag # found chain 1w33A in template set T0287 56 :TNKGALDKV 1w33A 151 :KNSEHYNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=17867 # 1tu9A.57.18 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 57 :NKGALDKVL 1tu9A 17 :STGFFDDFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17868 # 1zc6A.57.223 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)K58 (1zc6A)D225 because E (beta_S) conformation "forbidden" or filtered. T0287 57 :N 1zc6A 224 :V T0287 59 :GALDKVL 1zc6A 226 :PEADALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17870 # 1ikpA.57.303 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 57 :NKGALDKVL 1ikpA 304 :SWNQVDQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17871 # 2cygA.57.64 read from T0287.t04.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 2cygA 94 :PSAAGDWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17872 # 1xpjA.57.53 read from T0287.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1xpjA 54 :Y T0287 59 :GALDKVL 1xpjA 56 :GNVGKIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17874 # 1dk0A.57.142 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 57 :NKGALDKVL 1dk0A 143 :DTGALETAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17875 # 1sdiA.57.101 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)N57 (1sdiA)A102 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1sdiA 103 :KGALDTLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17876 # 1wer.57.301 read from T0287.t04.many.frag # found chain 1wer in training set T0287 57 :NKGALDKVL 1wer 1015 :ERGAQQHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17877 # 1zx4A.57.81 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 57 :NKGALDKVL 1zx4A 223 :KNLEFDQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17878 # 2aqlA.57.59 read from T0287.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVL 2aqlA 212 :YAVNEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17879 # 1q2lA.57.841 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)N57 (1q2lA)A865 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :KG 1q2lA 866 :PQ T0287 61 :LDKVL 1q2lA 869 :LGEEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=17881 # 1y6xA.57.36 read from T0287.t04.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1y6xA 38 :VHALGKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17882 # 1hz4A.57.229 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 57 :NKGALDKVL 1hz4A 228 :DKAAAANWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17883 # 1k78A.57.60 read from T0287.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 58 :K 1k78A 62 :H T0287 60 :ALDKVL 1k78A 64 :CVSKIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=17885 # 1ykjA.57.373 read from T0287.t04.many.frag # found chain 1ykjA in template set Warning: unaligning (T0287)N57 (1ykjA)S1374 because E (beta_S) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1ykjA 1375 :EAGLATIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17886 # 1z7lA.57.53 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17887 # 1tzvA.57.56 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 57 :NKGALDKVL 1tzvA 57 :NLSMIDDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17888 # 1cxzB.57.56 read from T0287.t04.many.frag # found chain 1cxzB in template set T0287 57 :NKGALDKVL 1cxzB 69 :SLGPVELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17889 # 1zupA.57.300 read from T0287.t04.many.frag # found chain 1zupA in template set T0287 57 :NKGALDKVL 1zupA 289 :DKNYMNTRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17890 # 1j75A.57.37 read from T0287.t04.many.frag # found chain 1j75A in template set T0287 57 :NKGALDKVL 1j75A 141 :PKKTLNQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17891 # 1qoyA.57.217 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 57 :NKGALDKVL 1qoyA 203 :VEGKLIPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17892 # 1mw9X.57.555 read from T0287.t04.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)A60 (1mw9X)E559 because E (beta_S) conformation "forbidden" or filtered. T0287 57 :NKG 1mw9X 556 :HEA T0287 61 :LDKVL 1mw9X 560 :WKAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17894 # 2bnxA.57.249 read from T0287.t04.many.frag # found chain 2bnxA in template set T0287 57 :NKGALDKVL 2bnxA 380 :DFGEVFQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=17895 # 1zs4A.57.36 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 57 :NKGALDKVL 1zs4A 36 :DKSQISRWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17896 # 1cg5B.57.93 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 57 :NKGALDKVL 1cg5B 94 :DTQNFKLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17897 # 1e6iA.57.90 read from T0287.t04.many.frag # found chain 1e6iA in template set T0287 57 :NKGALDKVL 1e6iA 409 :ENTSYYKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17898 # 1zk8A.57.107 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 57 :NKGALDKVL 1zk8A 108 :RDEEVRKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17899 # 1g3kA.57.66 read from T0287.t04.many.frag # found chain 1g3kA in template set Warning: unaligning (T0287)K58 (1g3kA)Q68 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1g3kA 67 :H T0287 59 :GALDKVL 1g3kA 69 :GHLLKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17901 # 1zpyA.57.73 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 57 :NKGALDKVL 1zpyA 74 :CDPAFDKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17902 # 1ho8A.57.257 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 57 :NKGALDKVL 1ho8A 256 :NPVFANELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17903 # 1zc6A.58.224 read from T0287.t04.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)K58 (1zc6A)D225 because E (beta_S) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1zc6A 226 :PEADALLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17904 # 1tu9A.58.19 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 58 :KGALDKVLR 1tu9A 18 :TGFFDDFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17905 # 1xpjA.58.54 read from T0287.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1xpjA)N57 because N (gamma') conformation "forbidden" or filtered. T0287 59 :G 1xpjA 56 :G T0287 61 :LDKVLR 1xpjA 58 :VGKINI Number of specific fragments extracted= 2 number of extra gaps= 2 total=17907 # 1y6xA.58.37 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 58 :KGALDKVLR 1y6xA 38 :VHALGKKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17908 # 1ikpA.58.304 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 58 :KGALDKVLR 1ikpA 305 :WNQVDQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17909 # 1dk0A.58.143 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 58 :KGALDKVLR 1dk0A 144 :TGALETALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17910 # 2aqlA.58.60 read from T0287.t04.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVLR 2aqlA 212 :YAVNEVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17911 # 1q2lA.58.842 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :K 1q2lA 866 :P T0287 61 :LDKVLR 1q2lA 869 :LGEEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17913 # 2cygA.58.65 read from T0287.t04.many.frag # found chain 2cygA in template set T0287 58 :KGALDKVLR 2cygA 94 :PSAAGDWIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17914 # 1tzvA.58.57 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 58 :KGALDKVLR 1tzvA 58 :LSMIDDLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17915 # 2f5xA.58.285 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 58 :KGALDKVLR 2f5xA 274 :PEALQAKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17916 # 1qoyA.58.218 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 58 :KGALDKVLR 1qoyA 204 :EGKLIPELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17917 # 1zx4A.58.82 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 58 :KGALDKVLR 1zx4A 224 :NLEFDQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17918 # 1zk8A.58.108 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 58 :KGALDKVLR 1zk8A 109 :DEEVRKAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17919 # 1hz4A.58.230 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 58 :KGALDKVLR 1hz4A 229 :KAAAANWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17920 # 1p4cA.58.318 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 58 :KGALDKVLR 1p4cA 319 :ETGVDEVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17921 # 1wer.58.302 read from T0287.t04.many.frag # found chain 1wer in training set T0287 58 :KGALDKVLR 1wer 1016 :RGAQQHVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17922 # 1mw9X.58.556 read from T0287.t04.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)K58 (1mw9X)E557 because G (3-10) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1mw9X 558 :AEWKAVLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17923 # 1po5A.58.119 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 58 :KGALDKVLR 1po5A 139 :KRSVEERIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17924 # 1zpyA.58.74 read from T0287.t04.many.frag # found chain 1zpyA in template set T0287 58 :KGALDKVLR 1zpyA 75 :DPAFDKELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17925 # 1j75A.58.38 read from T0287.t04.many.frag # found chain 1j75A in template set T0287 58 :KGALDKVLR 1j75A 142 :KKTLNQVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17926 # 1z7lA.58.54 read from T0287.t04.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 Warning: unaligning (T0287)R66 (1z7lA)R678 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=17927 # 1k78A.58.61 read from T0287.t04.many.frag # found chain 1k78A in template set T0287 58 :KGALDKVLR 1k78A 62 :HGCVSKILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17928 # 1fjgT.58.73 read from T0287.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1fjgT)N75 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLR 1fjgT 76 :AAARRKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17929 # 1ykjA.58.374 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 58 :KGALDKVLR 1ykjA 1375 :EAGLATIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17930 # 1ho8A.58.258 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 58 :KGALDKVLR 1ho8A 257 :PVFANELVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17931 # 1zs4A.58.37 read from T0287.t04.many.frag # found chain 1zs4A in template set T0287 58 :KGALDKVLR 1zs4A 37 :KSQISRWKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17932 # 1sdiA.58.102 read from T0287.t04.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 59 :GALDKVLR 1sdiA 104 :GALDTLGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=17933 # 1cg5B.58.94 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 58 :KGALDKVLR 1cg5B 95 :TQNFKLLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17934 # 1cxzB.58.57 read from T0287.t04.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)K58 (1cxzB)L70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1cxzB)G71 because H (helix) conformation "forbidden" or filtered. T0287 60 :ALDKVLR 1cxzB 72 :PVELLLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17935 # 1zc6A.59.225 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 59 :GALDKVLRN 1zc6A 226 :PEADALLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17936 # 1tu9A.59.20 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 59 :GALDKVLRN 1tu9A 19 :GFFDDFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17937 # 1y6xA.59.38 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 59 :GALDKVLRN 1y6xA 39 :HALGKKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17938 # 1ikpA.59.305 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 59 :GALDKVLRN 1ikpA 306 :NQVDQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17939 # 2f5xA.59.286 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 59 :GALDKVLRN 2f5xA 275 :EALQAKVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17940 # 1xpjA.59.55 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 59 :GALDKVLRN 1xpjA 56 :GNVGKINIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17941 # 1zx4A.59.83 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 59 :GALDKVLRN 1zx4A 225 :LEFDQLIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17942 # 1p4cA.59.319 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 59 :GALDKVLRN 1p4cA 320 :TGVDEVLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17943 # 1zk8A.59.109 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 59 :GALDKVLRN 1zk8A 110 :EEVRKAGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17944 # 2aqlA.59.61 read from T0287.t04.many.frag # found chain 2aqlA in template set T0287 59 :GALDKVLRN 2aqlA 212 :YAVNEVVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17945 # 1mw9X.59.557 read from T0287.t04.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)G59 (1mw9X)A558 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1mw9X)E559 because E (beta_S) conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1mw9X 560 :WKAVLDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=17946 # 1tzvA.59.58 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 59 :GALDKVLRN 1tzvA 59 :SMIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17947 # 1ho8A.59.259 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 59 :GALDKVLRN 1ho8A 258 :VFANELVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17948 # 1q2lA.59.843 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 59 :G 1q2lA 867 :Q T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17950 # 1fjgT.59.74 read from T0287.t04.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLRN 1fjgT 76 :AAARRKSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17951 # 2cygA.59.66 read from T0287.t04.many.frag # found chain 2cygA in template set T0287 59 :GALDKVLRN 2cygA 95 :SAAGDWIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17952 # 1or7A.59.46 read from T0287.t04.many.frag # found chain 1or7A in template set T0287 59 :GALDKVLRN 1or7A 44 :GDVPDVVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17953 # 1dk0A.59.144 read from T0287.t04.many.frag # found chain 1dk0A in training set T0287 59 :GALDKVLRN 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17954 # 1h6pA.59.129 read from T0287.t04.many.frag # found chain 1h6pA in template set T0287 59 :GALDKVLRN 1h6pA 172 :EKASKILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17955 # 1qoyA.59.219 read from T0287.t04.many.frag # found chain 1qoyA in template set Warning: unaligning (T0287)A60 (1qoyA)K206 because G (3-10) conformation "forbidden" or filtered. T0287 59 :G 1qoyA 205 :G T0287 61 :LDKVLRN 1qoyA 207 :LIPELKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17957 # 1po5A.59.120 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 59 :GALDKVLRN 1po5A 140 :RSVEERIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17958 # 1a6m.59.128 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 59 :GALDKVLRN 1a6m 129 :GAMNKALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17959 # 1hz4A.59.231 read from T0287.t04.many.frag # found chain 1hz4A in training set T0287 59 :GALDKVLRN 1hz4A 230 :AAAANWLRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17960 # 1jk0B.59.240 read from T0287.t04.many.frag # found chain 1jk0B in template set T0287 59 :GALDKVLRN 1jk0B 241 :KIIEKIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17961 # 1ykjA.59.375 read from T0287.t04.many.frag # found chain 1ykjA in template set T0287 59 :GALDKVLRN 1ykjA 1376 :AGLATIAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17962 # 1xp8A.59.179 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 59 :GALDKVLRN 1xp8A 177 :GLQARLMSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17963 # 1cg5B.59.95 read from T0287.t04.many.frag # found chain 1cg5B in training set T0287 59 :GALDKVLRN 1cg5B 96 :QNFKLLGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17964 # 1dlwA.59.71 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 59 :GALDKVLRN 1dlwA 72 :GVSNAQFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17965 # 1psrA.59.28 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 59 :GALDKVLRN 1psrA 29 :PSLLTMMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17966 # 1wa5C.59.393 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 59 :GALDKVLRN 1wa5C 394 :VLVTNIFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17967 # 1zc6A.60.226 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 60 :ALDKVLRNY 1zc6A 227 :EADALLRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17968 # 2f5xA.60.287 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 60 :ALDKVLRNY 2f5xA 276 :ALQAKVKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17969 # 1y6xA.60.39 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 60 :ALDKVLRNY 1y6xA 40 :ALGKKLLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17970 # 1mw9X.60.558 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 60 :ALDKVLRNY 1mw9X 559 :EWKAVLDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17971 # 1tu9A.60.21 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 60 :ALDKVLRNY 1tu9A 20 :FFDDFYRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17972 # 1tzvA.60.59 read from T0287.t04.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)Y68 (1tzvA)Y68 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1tzvA 60 :MIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17973 # 1p4cA.60.320 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 60 :ALDKVLRNY 1p4cA 321 :GVDEVLTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17974 # 1zk8A.60.110 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 60 :ALDKVLRNY 1zk8A 111 :EVRKAGDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17975 # 1ikpA.60.306 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 60 :ALDKVLRNY 1ikpA 307 :QVDQVIRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17976 # 1qoyA.60.220 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 60 :ALDKVLRNY 1qoyA 206 :KLIPELKNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17977 # 1h6pA.60.130 read from T0287.t04.many.frag # found chain 1h6pA in template set T0287 60 :ALDKVLRNY 1h6pA 173 :KASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17978 # 2aqlA.60.62 read from T0287.t04.many.frag # found chain 2aqlA in template set T0287 60 :ALDKVLRNY 2aqlA 213 :AVNEVVAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17979 # 1ho8A.60.260 read from T0287.t04.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)Y68 (1ho8A)Y267 because G (3-10) conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1ho8A 259 :FANELVQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17980 # 1fjgT.60.75 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 60 :ALDKVLRNY 1fjgT 76 :AAARRKSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17981 # 1psrA.60.29 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 60 :ALDKVLRNY 1psrA 30 :SLLTMMKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17982 # 1wa5C.60.394 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 60 :ALDKVLRNY 1wa5C 395 :LVTNIFLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17983 # 1xp8A.60.180 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 60 :ALDKVLRNY 1xp8A 178 :LQARLMSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17984 # 1bgf.60.100 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 60 :ALDKVLRNY 1bgf 100 :HVAVVISNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17985 # 1xpjA.60.56 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 60 :ALDKVLRNY 1xpjA 57 :NVGKINIHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17986 # 1q2lA.60.844 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1q2lA 869 :LGEEASKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17987 # 1a6m.60.129 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 60 :ALDKVLRNY 1a6m 130 :AMNKALELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17988 # 1po5A.60.121 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 60 :ALDKVLRNY 1po5A 141 :SVEERIQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17989 # 1or7A.60.47 read from T0287.t04.many.frag # found chain 1or7A in template set T0287 60 :ALDKVLRNY 1or7A 45 :DVPDVVQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17990 # 1dk0A.60.145 read from T0287.t04.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 T0287 60 :ALDKVLRN 1dk0A 146 :ALETALNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17991 # 1zx4A.60.84 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 60 :ALDKVLRNY 1zx4A 226 :EFDQLIQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17992 # 1txjA.60.85 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 60 :ALDKVLRNY 1txjA 86 :EYSVYIKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17993 # 2cygA.60.67 read from T0287.t04.many.frag # found chain 2cygA in template set T0287 60 :ALDKVLRNY 2cygA 96 :AAGDWIRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17994 # 1jk0B.60.241 read from T0287.t04.many.frag # found chain 1jk0B in template set T0287 60 :ALDKVLRNY 1jk0B 242 :IIEKIITEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17995 # 1cfr.60.33 read from T0287.t04.many.frag # found chain 1cfr in template set T0287 60 :ALDKVLRNY 1cfr 34 :EFSKVLSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17996 # 2bnlA.60.82 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 60 :ALDKVLRNY 2bnlA 83 :FLATALAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17997 # 1zc6A.61.227 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 61 :LDKVLRNYM 1zc6A 228 :ADALLRQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17998 # 2f5xA.61.288 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 61 :LDKVLRNYM 2f5xA 277 :LQAKVKQQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17999 # 1mw9X.61.559 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 61 :LDKVLRNYM 1mw9X 560 :WKAVLDHFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18000 # 1tu9A.61.22 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 61 :LDKVLRNYM 1tu9A 21 :FDDFYRHFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18001 # 1p4cA.61.321 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 61 :LDKVLRNYM 1p4cA 322 :VDEVLTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18002 # 1y6xA.61.40 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 61 :LDKVLRNYM 1y6xA 41 :LGKKLLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18003 # 1qoyA.61.221 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 61 :LDKVLRNYM 1qoyA 207 :LIPELKNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18004 # 1zk8A.61.111 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 61 :LDKVLRNYM 1zk8A 112 :VRKAGDGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18005 # 1bgf.61.101 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 61 :LDKVLRNYM 1bgf 101 :VAVVISNCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18006 # 1txjA.61.86 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 61 :LDKVLRNYM 1txjA 87 :YSVYIKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18007 # 1fjgT.61.76 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 61 :LDKVLRNYM 1fjgT 77 :AARRKSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18008 # 1tzvA.61.60 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 61 :LDKVLRNYM 1tzvA 61 :IDDLISRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18009 # 1h6pA.61.131 read from T0287.t04.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 61 :LDKVLRNY 1h6pA 174 :ASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18010 # 1psrA.61.30 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 61 :LDKVLRNYM 1psrA 31 :LLTMMKENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18011 # 1wa5C.61.395 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 61 :LDKVLRNYM 1wa5C 396 :VTNIFLAHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18012 # 1xp8A.61.181 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 61 :LDKVLRNYM 1xp8A 179 :QARLMSQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18013 # 1ho8A.61.261 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 61 :LDKVLRNYM 1ho8A 260 :ANELVQKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18014 # 1ikpA.61.307 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 61 :LDKVLRNYM 1ikpA 308 :VDQVIRNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18015 # 1a6m.61.130 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 61 :LDKVLRNYM 1a6m 131 :MNKALELFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18016 # 1or7A.61.48 read from T0287.t04.many.frag # found chain 1or7A in template set T0287 61 :LDKVLRNYM 1or7A 46 :VPDVVQEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18017 # 1sz9A.61.66 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 61 :LDKVLRNYM 1sz9A 67 :LDSICKNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18018 # 2aqlA.61.63 read from T0287.t04.many.frag # found chain 2aqlA in template set T0287 61 :LDKVLRNYM 2aqlA 214 :VNEVVAGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18019 # 1cfr.61.34 read from T0287.t04.many.frag # found chain 1cfr in template set T0287 61 :LDKVLRNYM 1cfr 35 :FSKVLSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18020 # 1zx4A.61.85 read from T0287.t04.many.frag # found chain 1zx4A in template set T0287 61 :LDKVLRNYM 1zx4A 227 :FDQLIQNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18021 # 2bnlA.61.83 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 61 :LDKVLRNYM 2bnlA 84 :LATALAEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18022 # 1jk0B.61.242 read from T0287.t04.many.frag # found chain 1jk0B in template set T0287 61 :LDKVLRNYM 1jk0B 243 :IEKIITEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18023 # 1q2lA.61.845 read from T0287.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)Y68 (1q2lA)L876 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK T0287 69 :M 1q2lA 877 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=18025 # 2au5A.61.84 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 61 :LDKVLRNYM 2au5A 82 :LKGELARLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18026 # 1xpjA.61.57 read from T0287.t04.many.frag # found chain 1xpjA in template set T0287 61 :LDKVLRNYM 1xpjA 58 :VGKINIHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18027 # 1hs6A.61.424 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 61 :LDKVLRNYM 1hs6A 424 :WKDFLYSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18028 # 1zc6A.62.228 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 62 :DKVLRNYMK 1zc6A 229 :DALLRQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18029 # 2f5xA.62.289 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 62 :DKVLRNYMK 2f5xA 278 :QAKVKQQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18030 # 1bgf.62.102 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 62 :DKVLRNYMK 1bgf 102 :AVVISNCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18031 # 1qoyA.62.222 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 62 :DKVLRNYMK 1qoyA 208 :IPELKNKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18032 # 1txjA.62.87 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 62 :DKVLRNYMK 1txjA 88 :SVYIKNYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18033 # 1mw9X.62.560 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 62 :DKVLRNYMK 1mw9X 561 :KAVLDHFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18034 # 1wa5C.62.396 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 62 :DKVLRNYMK 1wa5C 397 :TNIFLAHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18035 # 1tu9A.62.23 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 62 :DKVLRNYMK 1tu9A 22 :DDFYRHFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18036 # 1tzvA.62.61 read from T0287.t04.many.frag # found chain 1tzvA in training set T0287 62 :DKVLRNYMK 1tzvA 62 :DDLISRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18037 # 1psrA.62.31 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 62 :DKVLRNYMK 1psrA 32 :LTMMKENFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18038 # 1y6xA.62.41 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 62 :DKVLRNYMK 1y6xA 42 :GKKLLEEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18039 # 1fjgT.62.77 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 62 :DKVLRNYMK 1fjgT 78 :ARRKSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18040 # 1xp8A.62.182 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 62 :DKVLRNYMK 1xp8A 180 :ARLMSQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18041 # 1hs6A.62.425 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 62 :DKVLRNYMK 1hs6A 425 :KDFLYSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18042 # 1zk8A.62.112 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 62 :DKVLRNYMK 1zk8A 113 :RKAGDGIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18043 # 1h6pA.62.132 read from T0287.t04.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 62 :DKVLRNY 1h6pA 175 :SKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18044 # 1sz9A.62.67 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. T0287 62 :DKVLRNY 1sz9A 68 :DSICKNV T0287 70 :K 1sz9A 76 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=18046 # 1p4cA.62.322 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 62 :DKVLRNYMK 1p4cA 323 :DEVLTLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18047 # 1ho8A.62.262 read from T0287.t04.many.frag # found chain 1ho8A in template set T0287 62 :DKVLRNYMK 1ho8A 261 :NELVQKYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18048 # 2au5A.62.85 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 62 :DKVLRNYMK 2au5A 83 :KGELARLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18049 # 1j5wA.62.221 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 62 :DKVLRNYMK 1j5wA 210 :FRHFDEYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18050 # 1ytaA.62.111 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 62 :DKVLRNYMK 1ytaA 112 :RRFLFKYMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18051 # 2mhr.62.47 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 62 :DKVLRNYMK 2mhr 48 :VKVTTNHFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18052 # 1hw1A.62.185 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 62 :DKVLRNYMK 1hw1A 186 :RSLALGFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18053 # 1a6m.62.131 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 62 :DKVLRNYMK 1a6m 132 :NKALELFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18054 # 1po5A.62.123 read from T0287.t04.many.frag # found chain 1po5A in training set T0287 62 :DKVLRNYMK 1po5A 143 :EERIQEEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18055 # 1i60A.62.117 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 62 :DKVLRNYMK 1i60A 118 :KKSSVDVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18056 # 1ikpA.62.308 read from T0287.t04.many.frag # found chain 1ikpA in training set T0287 62 :DKVLRNYMK 1ikpA 309 :DQVIRNALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18057 # 1h7cA.62.67 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 62 :DKVLRNYMK 1h7cA 68 :QRRLEAAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18058 # 2bnlA.62.84 read from T0287.t04.many.frag # found chain 2bnlA in template set T0287 62 :DKVLRNYMK 2bnlA 85 :ATALAEFWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18059 # 1zc6A.63.229 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 63 :KVLRNYMKD 1zc6A 230 :ALLRQAGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=18060 # 1bgf.63.103 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 63 :KVLRNYMKD 1bgf 103 :VVISNCLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18061 # 2f5xA.63.290 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 63 :KVLRNYMKD 2f5xA 279 :AKVKQQVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18062 # 1txjA.63.88 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 63 :KVLRNYMKD 1txjA 89 :VYIKNYMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18063 # 1qoyA.63.223 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 63 :KVLRNYMKD 1qoyA 209 :PELKNKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18064 # 1fjgT.63.78 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 63 :KVLRNYMKD 1fjgT 79 :RRKSRLMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18065 # 1mw9X.63.561 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 63 :KVLRNYMKD 1mw9X 562 :AVLDHFFSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18066 # 1wa5C.63.397 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 63 :KVLRNYMKD 1wa5C 398 :NIFLAHMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18067 # 1tu9A.63.24 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 63 :KVLRNYMKD 1tu9A 23 :DFYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18068 # 1hs6A.63.426 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 63 :KVLRNYMKD 1hs6A 426 :DFLYSYFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18069 # 1zk8A.63.113 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 63 :KVLRNYMKD 1zk8A 114 :KAGDGIVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18070 # 1y6xA.63.42 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 63 :KVLRNYMKD 1y6xA 43 :KKLLEEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18071 # 1psrA.63.32 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 63 :KVLRNYMKD 1psrA 33 :TMMKENFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18072 # 1xp8A.63.183 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 63 :KVLRNYMKD 1xp8A 181 :RLMSQALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18073 # 1sz9A.63.68 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)K70 (1sz9A)S76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 63 :KVLRNYM 1sz9A 69 :SICKNVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=18074 # 1j5wA.63.222 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 63 :KVLRNYMKD 1j5wA 211 :RHFDEYEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18075 # 1ytaA.63.112 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 63 :KVLRNYMKD 1ytaA 113 :RFLFKYMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18076 # 2au5A.63.86 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 63 :KVLRNYMKD 2au5A 84 :GELARLIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18077 # 1p4cA.63.323 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 63 :KVLRNYMKD 1p4cA 324 :EVLTLLKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18078 # 2mhr.63.48 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 63 :KVLRNYMKD 2mhr 49 :KVTTNHFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18079 # 1muwA.63.64 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 63 :KVLRNYMKD 1muwA 65 :TERESHIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18080 # 1eyqA.63.104 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 63 :KVLRNYMKD 1eyqA 105 :EYSRKVMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18081 # 1mxrA.63.123 read from T0287.t04.many.frag # found chain 1mxrA in training set T0287 63 :KVLRNYMKD 1mxrA 124 :HIIRNIVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=18082 # 1hw1A.63.186 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 63 :KVLRNYMKD 1hw1A 187 :SLALGFYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18083 # 1tzvA.63.62 read from T0287.t04.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)Y68 (1tzvA)Y68 because G (3-10) conformation "forbidden" or filtered. T0287 63 :KVLRN 1tzvA 63 :DLISR T0287 69 :MKD 1tzvA 69 :LEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18085 # 1a6m.63.132 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 63 :KVLRNYMKD 1a6m 133 :KALELFRKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18086 # 1i60A.63.118 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 63 :KVLRNYMKD 1i60A 119 :KSSVDVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18087 # 1h7cA.63.68 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 63 :KVLRNYMKD 1h7cA 69 :RRLEAAYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18088 # 1yacA.63.184 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 63 :KVLRNYMKD 1yacA 185 :TLFSNHIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18089 # 1z8uA.63.38 read from T0287.t04.many.frag # found chain 1z8uA in template set T0287 63 :KVLRNYMKD 1z8uA 39 :TVVEDWMNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18090 # 1bgf.64.104 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 64 :VLRNYMKDY 1bgf 104 :VISNCLREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18091 # 1wa5C.64.398 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 64 :VLRNYMKDY 1wa5C 399 :IFLAHMKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18092 # 1txjA.64.89 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 64 :VLRNYMKDY 1txjA 90 :YIKNYMQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18093 # 2f5xA.64.291 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 64 :VLRNYMKDY 2f5xA 280 :KVKQQVPQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18094 # 1zc6A.64.230 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 64 :VLRNYMKDY 1zc6A 231 :LLRQAGEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18095 # 1qoyA.64.224 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 64 :VLRNYMKDY 1qoyA 210 :ELKNKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18096 # 1fjgT.64.79 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 64 :VLRNYMKDY 1fjgT 80 :RKSRLMRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18097 # 1mw9X.64.562 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 64 :VLRNYMKDY 1mw9X 563 :VLDHFFSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18098 # 1hs6A.64.427 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 64 :VLRNYMKDY 1hs6A 427 :FLYSYFKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18099 # 1xp8A.64.184 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 64 :VLRNYMKDY 1xp8A 182 :LMSQALRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18100 # 1ytaA.64.113 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 64 :VLRNYMKDY 1ytaA 114 :FLFKYMPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18101 # 1psrA.64.33 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 64 :VLRNYMKDY 1psrA 34 :MMKENFPNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18102 # 1i60A.64.119 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 64 :VLRNYMKDY 1i60A 120 :SSVDVLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18103 # 1tu9A.64.25 read from T0287.t04.many.frag # found chain 1tu9A in training set T0287 64 :VLRNYMKDY 1tu9A 24 :FYRHFLASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18104 # 1muwA.64.65 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 64 :VLRNYMKDY 1muwA 66 :ERESHIKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18105 # 1j5wA.64.223 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 64 :VLRNYMKDY 1j5wA 212 :HFDEYEKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18106 # 1y6xA.64.43 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 64 :VLRNYMKDY 1y6xA 44 :KLLEEAGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18107 # 1hw1A.64.187 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 64 :VLRNYMKDY 1hw1A 188 :LALGFYHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18108 # 2mhr.64.49 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 64 :VLRNYMKDY 2mhr 50 :VTTNHFTHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18109 # 1eyqA.64.105 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 64 :VLRNYMKDY 1eyqA 106 :YSRKVMENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18110 # 1zk8A.64.114 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 64 :VLRNYMKDY 1zk8A 115 :AGDGIVKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18111 # 1mxrA.64.124 read from T0287.t04.many.frag # found chain 1mxrA in training set Warning: unaligning (T0287)D71 (1mxrA)D132 because D (zeta) conformation "forbidden" or filtered. T0287 64 :VLRNYMK 1mxrA 125 :IIRNIVN T0287 72 :Y 1mxrA 133 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18113 # 1h7cA.64.69 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 64 :VLRNYMKDY 1h7cA 70 :RLEAAYLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18114 # 2au5A.64.87 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 64 :VLRNYMKDY 2au5A 85 :ELARLIRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18115 # 1b5l.64.118 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 64 :VLRNYMKDY 1b5l 119 :TVKKYFQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18116 # 1yacA.64.185 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 64 :VLRNYMKDY 1yacA 186 :LFSNHIPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18117 # 1l9lA.64.43 read from T0287.t04.many.frag # found chain 1l9lA in training set Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE in next template residue (1l9lA)Y52 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE at template residue (1l9lA)Y52 T0287 64 :VLRNYMK 1l9lA 44 :VCRNFMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18118 # 1p4cA.64.324 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 64 :VLRNYMKDY 1p4cA 325 :VLTLLKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18119 # 1z8uA.64.39 read from T0287.t04.many.frag # found chain 1z8uA in template set T0287 64 :VLRNYMKDY 1z8uA 40 :VVEDWMNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18120 # 1sz9A.64.69 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 64 :VLRNY 1sz9A 70 :ICKNV T0287 70 :K 1sz9A 76 :S T0287 72 :Y 1sz9A 78 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=18123 # 1wa5C.65.399 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 65 :LRNYMKDYR 1wa5C 400 :FLAHMKGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18124 # 1bgf.65.105 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 65 :LRNYMKDYR 1bgf 105 :ISNCLREER Number of specific fragments extracted= 1 number of extra gaps= 0 total=18125 # 1zc6A.65.231 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 65 :LRNYMKDYR 1zc6A 232 :LRQAGEDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18126 # 2f5xA.65.292 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 65 :LRNYMKDYR 2f5xA 281 :VKQQVPQWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18127 # 1txjA.65.90 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 65 :LRNYMKDYR 1txjA 91 :IKNYMQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18128 # 1fjgT.65.80 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 65 :LRNYMKDYR 1fjgT 81 :KSRLMRKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18129 # 1xp8A.65.185 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 65 :LRNYMKDYR 1xp8A 183 :MSQALRKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18130 # 1muwA.65.66 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 65 :LRNYMKDYR 1muwA 67 :RESHIKRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18131 # 1mw9X.65.563 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 65 :LRNYMKDYR 1mw9X 564 :LDHFFSDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18132 # 1qoyA.65.225 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 65 :LRNYMKDYR 1qoyA 211 :LKNKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18133 # 1j5wA.65.224 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 65 :LRNYMKDYR 1j5wA 213 :FDEYEKEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18134 # 1hs6A.65.428 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 65 :LRNYMKDYR 1hs6A 428 :LYSYFKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18135 # 1eyqA.65.106 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 65 :LRNYMKDYR 1eyqA 107 :SRKVMENCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18136 # 2mhr.65.50 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 65 :LRNYMKDYR 2mhr 51 :TTNHFTHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18137 # 1ytaA.65.114 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 65 :LRNYMKDYR 1ytaA 115 :LFKYMPELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18138 # 1psrA.65.34 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)Y68 (1psrA)N38 because G (3-10) conformation "forbidden" or filtered. T0287 65 :LRN 1psrA 35 :MKE T0287 69 :MKDYR 1psrA 39 :FPNFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18140 # 1p4cA.65.325 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 65 :LRNYMKDYR 1p4cA 326 :LTLLKADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18141 # 1zk8A.65.115 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 65 :LRNYMKDYR 1zk8A 116 :GDGIVKLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18142 # 1b5l.65.119 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 65 :LRNYMKDYR 1b5l 120 :VKKYFQGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18143 # 1tu9A.65.26 read from T0287.t04.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)Y72 (1tu9A)S32 because Y (epsilon') conformation "forbidden" or filtered. T0287 65 :LRNYMKD 1tu9A 25 :YRHFLAS T0287 73 :R 1tu9A 33 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18145 # 1i60A.65.120 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 65 :LRNYMKDYR 1i60A 121 :SVDVLTELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18146 # 1h7cA.65.70 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 65 :LRNYMKDYR 1h7cA 71 :LEAAYLDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18147 # 1a6m.65.134 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 65 :LRNYMKDYR 1a6m 135 :LELFRKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18148 # 1hw1A.65.188 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 65 :LRNYMKDYR 1hw1A 189 :ALGFYHKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18149 # 1uw4B.65.78 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 65 :LRNYMKDYR 1uw4B 846 :VDGVLEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18150 # 1y6xA.65.44 read from T0287.t04.many.frag # found chain 1y6xA in training set T0287 65 :LRNYMKDYR 1y6xA 45 :LLEEAGEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18151 # 1dlwA.65.77 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 65 :LRNYMKDYR 1dlwA 78 :FTTVIGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18152 # 1fjgI.65.84 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 65 :LRNYMKDYR 1fjgI 85 :LVQYNPDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18153 # 1ail.65.35 read from T0287.t04.many.frag # found chain 1ail in template set T0287 65 :LRNYMKDYR 1ail 36 :LRRDQKSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18154 # 2au5A.65.88 read from T0287.t04.many.frag # found chain 2au5A in template set T0287 65 :LRNYMKDYR 2au5A 86 :LARLIRLYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18155 # 1wa5C.66.400 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 66 :RNYMKDYRA 1wa5C 401 :LAHMKGFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18156 # 2f5xA.66.293 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 66 :RNYMKDYRA 2f5xA 282 :KQQVPQWAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18157 # 1bgf.66.106 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 66 :RNYMKDYRA 1bgf 106 :SNCLREERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18158 # 1qoyA.66.226 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 66 :RNYMKDYRA 1qoyA 212 :KNKLKSVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18159 # 1txjA.66.91 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 66 :RNYMKDYRA 1txjA 92 :KNYMQKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18160 # 1fjgT.66.81 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 66 :RNYMKDYRA 1fjgT 82 :SRLMRKVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18161 # 1muwA.66.67 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 66 :RNYMKDYRA 1muwA 68 :ESHIKRFRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18162 # 1zc6A.66.232 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 66 :RNYMKDYRA 1zc6A 233 :RQAGEDAWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18163 # 1xp8A.66.186 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 66 :RNYMKDYRA 1xp8A 184 :SQALRKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18164 # 1psrA.66.35 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 66 :RNYMKDYRA 1psrA 36 :KENFPNFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18165 # 2mhr.66.51 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 66 :RNYMKDYRA 2mhr 52 :TNHFTHEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18166 # 1i60A.66.121 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 66 :RNYMKDYRA 1i60A 122 :VDVLTELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18167 # 1eyqA.66.107 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 66 :RNYMKDYRA 1eyqA 108 :RKVMENCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18168 # 1hs6A.66.429 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 66 :RNYMKDYRA 1hs6A 429 :YSYFKDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18169 # 1h7cA.66.71 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 66 :RNYMKDYRA 1h7cA 72 :EAAYLDLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18170 # 1a6m.66.135 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 66 :RNYMKDYRA 1a6m 136 :ELFRKDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18171 # 1mw9X.66.564 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 66 :RNYMKDYRA 1mw9X 565 :DHFFSDFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18172 # 1hw1A.66.189 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 66 :RNYMKDYRA 1hw1A 190 :LGFYHKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18173 # 1b5l.66.120 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 66 :RNYMKDYRA 1b5l 121 :KKYFQGIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18174 # 1ytaA.66.115 read from T0287.t04.many.frag # found chain 1ytaA in template set T0287 66 :RNYMKDYRA 1ytaA 116 :FKYMPELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18175 # 1iuqA.66.37 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 66 :RNYMKDYRA 1iuqA 39 :EELYQNYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18176 # 1j5wA.66.225 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 66 :RNYMKDYRA 1j5wA 214 :DEYEKEFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18177 # 1fkmA.66.61 read from T0287.t04.many.frag # found chain 1fkmA in template set T0287 66 :RNYMKDYRA 1fkmA 309 :QRKRKEYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18178 # 1fjgI.66.85 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 66 :RNYMKDYRA 1fjgI 86 :VQYNPDYRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18179 # 1ail.66.36 read from T0287.t04.many.frag # found chain 1ail in template set T0287 66 :RNYMKDYRA 1ail 37 :RRDQKSLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18180 # 1dlwA.66.78 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 66 :RNYMKDYRA 1dlwA 79 :TTVIGHLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18181 # 1p4cA.66.326 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 66 :RNYMKDYRA 1p4cA 327 :TLLKADIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18182 # 1zk8A.66.116 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 66 :RNYMKDYRA 1zk8A 117 :DGIVKLCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18183 # 1yacA.66.187 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 66 :RNYMKDYRA 1yacA 188 :SNHIPDYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18184 # 1yviA.66.75 read from T0287.t04.many.frag # found chain 1yviA in template set T0287 66 :RNYMKDYRA 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18185 # 2f5xA.67.294 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 67 :NYMKDYRAV 2f5xA 283 :QQVPQWAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18186 # 1wa5C.67.401 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 67 :NYMKDYRAV 1wa5C 402 :AHMKGFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18187 # 1fjgT.67.82 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 67 :NYMKDYRAV 1fjgT 83 :RLMRKVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18188 # 1muwA.67.68 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 67 :NYMKDYRAV 1muwA 69 :SHIKRFRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18189 # 1bgf.67.107 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 67 :NYMKDYRAV 1bgf 107 :NCLREERRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18190 # 1xp8A.67.187 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 67 :NYMKDYRAV 1xp8A 185 :QALRKLTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18191 # 1fjgI.67.86 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 67 :NYMKDYRAV 1fjgI 87 :QYNPDYRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18192 # 2mhr.67.52 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 67 :NYMKDYRAV 2mhr 53 :NHFTHEEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18193 # 1iuqA.67.38 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 67 :NYMKDYRAV 1iuqA 40 :ELYQNYRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18194 # 1zc6A.67.233 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 67 :NYMKDYRAV 1zc6A 234 :QAGEDAWAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18195 # 1eyqA.67.108 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 67 :NYMKDYRAV 1eyqA 109 :KVMENCVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18196 # 1qoyA.67.227 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 67 :NYMKDYRAV 1qoyA 213 :NKLKSVQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18197 # 1txjA.67.92 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 67 :NYMKDYRAV 1txjA 93 :NYMQKILKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18198 # 1hw1A.67.190 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 67 :NYMKDYRAV 1hw1A 191 :GFYHKLSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18199 # 1dlwA.67.79 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 67 :NYMKDYRAV 1dlwA 80 :TVIGHLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18200 # 1psrA.67.36 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 67 :NYMKDYRAV 1psrA 37 :ENFPNFLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18201 # 1a6m.67.136 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 67 :NYMKDYRAV 1a6m 137 :LFRKDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18202 # 1h7cA.67.72 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 67 :NYMKDYRAV 1h7cA 73 :AAYLDLQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18203 # 1hs6A.67.430 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 67 :NYMKDYRAV 1hs6A 430 :SYFKDKVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18204 # 1i60A.67.122 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 67 :NYMKDYRAV 1i60A 123 :DVLTELSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18205 # 1zk8A.67.117 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 67 :NYMKDYRAV 1zk8A 118 :GIVKLCLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18206 # 1b5l.67.121 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 67 :NYMKDYRAV 1b5l 122 :KYFQGIYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18207 # 1p4cA.67.327 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 67 :NYMKDYRAV 1p4cA 328 :LLKADIDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18208 # 1fkmA.67.62 read from T0287.t04.many.frag # found chain 1fkmA in template set T0287 67 :NYMKDYRAV 1fkmA 310 :RKRKEYRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18209 # 1mw9X.67.565 read from T0287.t04.many.frag # found chain 1mw9X in training set T0287 67 :NYMKDYRAV 1mw9X 566 :HFFSDFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18210 # 1j5wA.67.226 read from T0287.t04.many.frag # found chain 1j5wA in template set T0287 67 :NYMKDYRAV 1j5wA 215 :EYEKEFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18211 # 1uw4B.67.80 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 67 :NYMKDYRAV 1uw4B 848 :GVLEDIRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18212 # 1m48A.67.60 read from T0287.t04.many.frag # found chain 1m48A in template set T0287 67 :NYMKDYRAV 1m48A 61 :EELKPLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18213 # 1ail.67.37 read from T0287.t04.many.frag # found chain 1ail in template set T0287 67 :NYMKDYRAV 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18214 # 1yacA.67.188 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 67 :NYMKDYRAV 1yacA 189 :NHIPDYRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18215 # 2f5xA.68.295 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 68 :YMKDYRAVI 2f5xA 284 :QVPQWAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18216 # 1fjgI.68.87 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 68 :YMKDYRAVI 1fjgI 88 :YNPDYRAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18217 # 1wa5C.68.402 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 68 :YMKDYRAVI 1wa5C 403 :HMKGFVDQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18218 # 1fjgT.68.83 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 68 :YMKDYRAVI 1fjgT 84 :LMRKVRQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18219 # 1muwA.68.69 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 68 :YMKDYRAVI 1muwA 70 :HIKRFRQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18220 # 1bgf.68.108 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 68 :YMKDYRAVI 1bgf 108 :CLREERRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18221 # 1psrA.68.37 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 68 :YMKDYRAVI 1psrA 38 :NFPNFLSAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18222 # 2mhr.68.53 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 68 :YMKDYRAVI 2mhr 54 :HFTHEEAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18223 # 1dlwA.68.80 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 68 :YMKDYRAVI 1dlwA 81 :VIGHLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18224 # 1iuqA.68.39 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 68 :YMKDYRAVI 1iuqA 41 :LYQNYRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18225 # 1xp8A.68.188 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 68 :YMKDYRAVI 1xp8A 186 :ALRKLTAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18226 # 1eyqA.68.109 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 68 :YMKDYRAVI 1eyqA 110 :VMENCVAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18227 # 1hw1A.68.191 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 68 :YMKDYRAVI 1hw1A 192 :FYHKLSALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18228 # 1zc6A.68.234 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 68 :YMKDYRAVI 1zc6A 235 :AGEDAWAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18229 # 1txjA.68.93 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 68 :YMKDYRAVI 1txjA 94 :YMQKILKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18230 # 1yacA.68.189 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 68 :YMKDYRAVI 1yacA 190 :HIPDYRNLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18231 # 1hs6A.68.431 read from T0287.t04.many.frag # found chain 1hs6A in template set T0287 68 :YMKDYRAVI 1hs6A 431 :YFKDKVDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18232 # 1h7cA.68.73 read from T0287.t04.many.frag # found chain 1h7cA in training set T0287 68 :YMKDYRAVI 1h7cA 74 :AYLDLQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18233 # 1qoyA.68.228 read from T0287.t04.many.frag # found chain 1qoyA in template set T0287 68 :YMKDYRAVI 1qoyA 214 :KLKSVQNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18234 # 1yqyA.68.53 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 68 :YMKDYRAVI 1yqyA 311 :LSQEEKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18235 # 1a6m.68.137 read from T0287.t04.many.frag # found chain 1a6m in training set T0287 68 :YMKDYRAVI 1a6m 138 :FRKDIAAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18236 # 1ail.68.38 read from T0287.t04.many.frag # found chain 1ail in template set T0287 68 :YMKDYRAVI 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18237 # 1i60A.68.123 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 68 :YMKDYRAVI 1i60A 124 :VLTELSDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18238 # 1p4cA.68.328 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 68 :YMKDYRAVI 1p4cA 329 :LKADIDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18239 # 1a8o.68.43 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 68 :YMKDYRAVI 1a8o 194 :ANPDCKTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18240 # 1zk8A.68.118 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 68 :YMKDYRAVI 1zk8A 119 :IVKLCLQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18241 # 1b5l.68.122 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 68 :YMKDYRAVI 1b5l 123 :YFQGIYDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18242 # 1cxqA.68.115 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 68 :YMKDYRAVI 1cxqA 163 :LKDKIRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18243 # 2f6hX.68.76 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 68 :YMKDYRAVI 2f6hX 98 :VLTTIQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18244 # 1uw4B.68.81 read from T0287.t04.many.frag # found chain 1uw4B in template set T0287 68 :YMKDYRAVI 1uw4B 849 :VLEDIRLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18245 # 2f5xA.69.296 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 69 :MKDYRAVIK 2f5xA 285 :VPQWAELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18246 # 1fjgI.69.88 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 69 :MKDYRAVIK 1fjgI 89 :NPDYRAKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18247 # 2mhr.69.54 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 69 :MKDYRAVIK 2mhr 55 :FTHEEAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18248 # 1fjgT.69.84 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 69 :MKDYRAVIK 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18249 # 1iuqA.69.40 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 69 :MKDYRAVIK 1iuqA 42 :YQNYRNAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18250 # 1hw1A.69.192 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 69 :MKDYRAVIK 1hw1A 193 :YHKLSALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18251 # 1dlwA.69.81 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 69 :MKDYRAVIK 1dlwA 82 :IGHLRSALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18252 # 1xp8A.69.189 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 69 :MKDYRAVIK 1xp8A 187 :LRKLTAILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18253 # 1muwA.69.70 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 69 :MKDYRAVIK 1muwA 71 :IKRFRQALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18254 # 1eyqA.69.110 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 69 :MKDYRAVIK 1eyqA 111 :MENCVAHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18255 # 1psrA.69.38 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 69 :MKDYRAVIK 1psrA 39 :FPNFLSACD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18256 # 1bgf.69.109 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 69 :MKDYRAVIK 1bgf 109 :LREERRILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18257 # 1yqyA.69.54 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 69 :MKDYRAVIK 1yqyA 312 :SQEEKELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18258 # 1wa5C.69.403 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 69 :MKDYRAVIK 1wa5C 404 :MKGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18259 # 1bxyA.69.15 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 69 :MKDYRAVIK 1bxyA 16 :PKDQKAALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18260 # 1eexA.69.415 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 69 :MKDYRAVIK 1eexA 416 :ARALQAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18261 # 1i60A.69.124 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 69 :MKDYRAVIK 1i60A 125 :LTELSDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18262 # 2f6hX.69.77 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 69 :MKDYRAVIK 2f6hX 99 :LTTIQKVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18263 # 1cxqA.69.116 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 69 :MKDYRAVIK 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18264 # 1zk8A.69.119 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 69 :MKDYRAVIK 1zk8A 120 :VKLCLQVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18265 # 1ajsA.69.333 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 69 :MKDYRAVIK 1ajsA 334 :RSELRARLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18266 # 1t0fA.69.197 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 69 :MKDYRAVIK 1t0fA 195 :LSPLAHILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18267 # 1a8o.69.44 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 69 :MKDYRAVIK 1a8o 195 :NPDCKTILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18268 # 1zc6A.69.235 read from T0287.t04.many.frag # found chain 1zc6A in template set T0287 69 :MKDYRAVIK 1zc6A 236 :GEDAWAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18269 # 1yacA.69.190 read from T0287.t04.many.frag # found chain 1yacA in training set T0287 69 :MKDYRAVIK 1yacA 191 :IPDYRNLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18270 # 1txjA.69.94 read from T0287.t04.many.frag # found chain 1txjA in template set T0287 69 :MKDYRAVIK 1txjA 95 :MQKILKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18271 # 1b5l.69.123 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 69 :MKDYRAVIK 1b5l 124 :FQGIYDYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18272 # 1p4cA.69.329 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 69 :MKDYRAVIK 1p4cA 330 :KADIDRTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18273 # 8abp.69.117 read from T0287.t04.many.frag # found chain 8abp in training set T0287 69 :MKDYRAVIK 8abp 118 :GQELYKEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18274 # 2f22A.69.119 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 69 :MKDYRAVIK 2f22A 119 :QGQYYVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18275 # 2f5xA.70.297 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 70 :KDYRAVIKS 2f5xA 286 :PQWAELFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18276 # 2mhr.70.55 read from T0287.t04.many.frag # found chain 2mhr in training set T0287 70 :KDYRAVIKS 2mhr 56 :THEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18277 # 1fjgT.70.85 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 70 :KDYRAVIKS 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18278 # 1dlwA.70.82 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 70 :KDYRAVIKS 1dlwA 83 :GHLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18279 # 1eyqA.70.111 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 70 :KDYRAVIKS 1eyqA 112 :ENCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18280 # 1hw1A.70.193 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 70 :KDYRAVIKS 1hw1A 194 :HKLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18281 # 1eexA.70.416 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 70 :KDYRAVIKS 1eexA 417 :RALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18282 # 1iuqA.70.41 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 70 :KDYRAVIKS 1iuqA 43 :QNYRNAVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18283 # 1xp8A.70.190 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 70 :KDYRAVIKS 1xp8A 188 :RKLTAILSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18284 # 1yqyA.70.55 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 70 :KDYRAVIKS 1yqyA 313 :QEEKELLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18285 # 1fjgI.70.89 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 70 :KDYRAVIKS 1fjgI 90 :PDYRAKLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18286 # 2f6hX.70.78 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 70 :KDYRAVIKS 2f6hX 100 :TTIQKVVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18287 # 1bgf.70.110 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 70 :KDYRAVIKS 1bgf 110 :REERRILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18288 # 1psrA.70.39 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 70 :KDYRAVIKS 1psrA 40 :PNFLSACDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18289 # 1bxyA.70.16 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 70 :KDYRAVIKS 1bxyA 17 :KDQKAALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18290 # 1muwA.70.71 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 70 :KDYRAVIKS 1muwA 72 :KRFRQALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18291 # 1cxqA.70.117 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 70 :KDYRAVIKS 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18292 # 1a8o.70.45 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 70 :KDYRAVIKS 1a8o 196 :PDCKTILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18293 # 1y0zA.70.74 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 70 :KDYRAVIKS 1y0zA 75 :DDFNDVVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18294 # 1t0fA.70.198 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 70 :KDYRAVIKS 1t0fA 196 :SPLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18295 # 1p4cA.70.330 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 70 :KDYRAVIKS 1p4cA 331 :ADIDRTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18296 # 2f22A.70.120 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 70 :KDYRAVIKS 2f22A 120 :GQYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18297 # 1zk8A.70.120 read from T0287.t04.many.frag # found chain 1zk8A in template set T0287 70 :KDYRAVIKS 1zk8A 121 :KLCLQVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18298 # 1i60A.70.125 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 70 :KDYRAVIKS 1i60A 126 :TELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18299 # 1wa5C.70.404 read from T0287.t04.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wa5C)N418 T0287 70 :KDYRAVIK 1wa5C 405 :KGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18300 # 1b5l.70.124 read from T0287.t04.many.frag # found chain 1b5l in template set T0287 70 :KDYRAVIKS 1b5l 125 :QGIYDYLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18301 # 1pa7A.70.75 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 70 :KDYRAVIKS 1pa7A 76 :KILQAGFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18302 # 1mn8A.70.17 read from T0287.t04.many.frag # found chain 1mn8A in training set T0287 70 :KDYRAVIKS 1mn8A 17 :KDVERIAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18303 # 8abp.70.118 read from T0287.t04.many.frag # found chain 8abp in training set T0287 70 :KDYRAVIKS 8abp 119 :QELYKEMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18304 # 1y2qA.70.61 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 70 :KDYRAVIKS 1y2qA 62 :EEISKVAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18305 # 2f5xA.71.298 read from T0287.t04.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)I79 (2f5xA)A295 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 2f5xA 287 :QWAELFKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18306 # 1fjgT.71.86 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 71 :DYRAVIKSI 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18307 # 2mhr.71.56 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 T0287 71 :DYRAVIKS 2mhr 57 :HEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18308 # 1yqyA.71.56 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 71 :DYRAVIKSI 1yqyA 314 :EEKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18309 # 1eyqA.71.112 read from T0287.t04.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1eyqA 113 :NCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=18310 # 1hw1A.71.194 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1hw1A 195 :KLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18311 # 1iuqA.71.42 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 71 :DYRAVIKSI 1iuqA 44 :NYRNAVIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=18312 # 1xp8A.71.191 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 71 :DYRAVIKSI 1xp8A 189 :KLTAILSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18313 # 1dlwA.71.83 read from T0287.t04.many.frag # found chain 1dlwA in training set Warning: unaligning (T0287)I79 (1dlwA)A92 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1dlwA 84 :HLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=18314 # 1bxyA.71.17 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 71 :DYRAVIKSI 1bxyA 18 :DQKAALKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18315 # 2f6hX.71.79 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 71 :DYRAVIKSI 2f6hX 101 :TIQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18316 # 1eexA.71.417 read from T0287.t04.many.frag # found chain 1eexA in training set T0287 71 :DYRAVIKSI 1eexA 418 :ALQAVFAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18317 # 1a8o.71.46 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 71 :DYRAVIKSI 1a8o 197 :DCKTILKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18318 # 1psrA.71.40 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 71 :DYRAVIKSI 1psrA 41 :NFLSACDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18319 # 1t0fA.71.199 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 71 :DYRAVIKSI 1t0fA 197 :PLAHILQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18320 # 1y0zA.71.75 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 71 :DYRAVIKSI 1y0zA 76 :DFNDVVEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18321 # 2f22A.71.121 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 2f22A 121 :QYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=18322 # 1y2qA.71.62 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 71 :DYRAVIKSI 1y2qA 63 :EISKVAEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18323 # 1p4cA.71.331 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 71 :DYRAVIKSI 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18324 # 1i60A.71.126 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 71 :DYRAVIKSI 1i60A 127 :ELSDIAEPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18325 # 1fjgI.71.90 read from T0287.t04.many.frag # found chain 1fjgI in template set T0287 71 :DYRAVIKSI 1fjgI 91 :DYRAKLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18326 # 1ajsA.71.335 read from T0287.t04.many.frag # found chain 1ajsA in training set T0287 71 :DYRAVIKSI 1ajsA 336 :ELRARLEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18327 # 1bgf.71.111 read from T0287.t04.many.frag # found chain 1bgf in training set T0287 71 :DYRAVIKSI 1bgf 111 :EERRILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18328 # 1pa7A.71.76 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 71 :DYRAVIKSI 1pa7A 77 :ILQAGFKRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18329 # 1muwA.71.72 read from T0287.t04.many.frag # found chain 1muwA in training set T0287 71 :DYRAVIKSI 1muwA 73 :RFRQALDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18330 # 1cxqA.71.118 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 71 :DYRAVIKSI 1cxqA 166 :KIRVLAEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18331 # 1rcwA.71.183 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 71 :DYRAVIKSI 1rcwA 184 :EEKALIEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=18332 # 1mn8A.71.18 read from T0287.t04.many.frag # found chain 1mn8A in training set T0287 71 :DYRAVIKSI 1mn8A 18 :DVERIAHNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18333 # 8abp.71.119 read from T0287.t04.many.frag # found chain 8abp in training set T0287 71 :DYRAVIKSI 8abp 120 :ELYKEMQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18334 # 2ajtA.71.212 read from T0287.t04.many.frag # found chain 2ajtA in template set T0287 71 :DYRAVIKSI 2ajtA 213 :DLVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18335 # 2f5xA.72.299 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 72 :YRAVIKSIG 2f5xA 288 :WAELFKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18336 # 1fjgT.72.87 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 72 :YRAVIKSIG 1fjgT 88 :VRQLLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18337 # 1yqyA.72.57 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 72 :YRAVIKSIG 1yqyA 315 :EKELLKRIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18338 # 2mhr.72.57 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 72 :YRAVIKS 2mhr 58 :EEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18339 # 1eyqA.72.113 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 72 :YRAVIKSIG 1eyqA 114 :CVAHLKSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18340 # 1bxyA.72.18 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 72 :YRAVIKSIG 1bxyA 19 :QKAALKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18341 # 1eexA.72.418 read from T0287.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)I79 (1eexA)M426 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1eexA 419 :LQAVFAG T0287 80 :G 1eexA 427 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18343 # 1y0zA.72.76 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 72 :YRAVIKSIG 1y0zA 77 :FNDVVEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18344 # 1y2qA.72.63 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 72 :YRAVIKSIG 1y2qA 64 :ISKVAEQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18345 # 1xp8A.72.192 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 72 :YRAVIKSIG 1xp8A 190 :LTAILSKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18346 # 1hw1A.72.195 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1hw1A 196 :LSALCSE T0287 80 :G 1hw1A 204 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=18348 # 1iuqA.72.43 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 72 :YRAVIKSIG 1iuqA 45 :YRNAVIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18349 # 1dlwA.72.84 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 72 :YRAVIKSIG 1dlwA 85 :LRSALTGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18350 # 1t0fA.72.200 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 72 :YRAVIKSIG 1t0fA 198 :LAHILQEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18351 # 2f22A.72.122 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 2f22A 122 :YYVALKQ T0287 80 :G 2f22A 130 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18353 # 2f6hX.72.80 read from T0287.t04.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)G80 (2f6hX)K110 because Y (epsilon') conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 2f6hX 102 :IQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18354 # 1a8o.72.47 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 72 :YRAVIKSIG 1a8o 198 :CKTILKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18355 # 1psrA.72.41 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1psrA 42 :FLSACDK T0287 80 :G 1psrA 50 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18357 # 1cxqA.72.119 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 72 :YRAVIKSIG 1cxqA 167 :IRVLAEGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18358 # 1pa7A.72.77 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 72 :YRAVIKSIG 1pa7A 78 :LQAGFKRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18359 # 1k3yA.72.134 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 T0287 72 :YRAVIKSI 1k3yA 136 :FEKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=18360 # 1p4cA.72.332 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 72 :YRAVIKSIG 1p4cA 333 :IDRTLAQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18361 # 1ve4A.72.18 read from T0287.t04.many.frag # found chain 1ve4A in template set T0287 72 :YRAVIKSIG 1ve4A 19 :AYEVLKRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18362 # 2bu3A.72.138 read from T0287.t04.many.frag # found chain 2bu3A in template set T0287 72 :YRAVIKSIG 2bu3A 128 :LGRLIASYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18363 # 1rcwA.72.184 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 72 :YRAVIKSIG 1rcwA 185 :EKALIEMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18364 # 1s1dA.72.195 read from T0287.t04.many.frag # found chain 1s1dA in training set T0287 72 :YRAVIKSIG 1s1dA 196 :YNALRAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18365 # 2ajtA.72.213 read from T0287.t04.many.frag # found chain 2ajtA in template set T0287 72 :YRAVIKSIG 2ajtA 214 :LVQVVNSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18366 # 1ajsA.72.336 read from T0287.t04.many.frag # found chain 1ajsA in training set Warning: unaligning (T0287)I79 (1ajsA)L344 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1ajsA 337 :LRARLEA T0287 80 :G 1ajsA 345 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=18368 # 1i60A.72.127 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 72 :YRAVIKSIG 1i60A 128 :LSDIAEPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18369 # 1f5mA.72.52 read from T0287.t04.many.frag # found chain 1f5mA in template set T0287 72 :YRAVIKSIG 1f5mA 53 :IWHAYKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18370 # 2f5xA.73.300 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 73 :RAVIKSIGV 2f5xA 289 :AELFKKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18371 # 1yqyA.73.58 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 73 :RAVIKSIGV 1yqyA 316 :KELLKRIQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18372 # 2mhr.73.58 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 73 :RAVIKS 2mhr 59 :EAMMDA T0287 81 :V 2mhr 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=18374 # 1fjgT.73.88 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 73 :RAVIKSIGV 1fjgT 89 :RQLLEAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18375 # 1bxyA.73.19 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 73 :RAVIKSIGV 1bxyA 20 :KAALKALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18376 # 1iuqA.73.44 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 73 :RAVIKSIGV 1iuqA 46 :RNAVIESGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18377 # 1hw1A.73.196 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1hw1A 197 :SALCSE T0287 81 :V 1hw1A 205 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=18379 # 1eexA.73.419 read from T0287.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)I79 (1eexA)M426 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1eexA 420 :QAVFAG T0287 80 :GV 1eexA 427 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18381 # 1psrA.73.42 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1psrA 43 :LSACDK T0287 80 :GV 1psrA 50 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18383 # 1t0fA.73.201 read from T0287.t04.many.frag # found chain 1t0fA in template set T0287 73 :RAVIKSIGV 1t0fA 199 :AHILQEKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18384 # 1y0zA.73.77 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 73 :RAVIKSIGV 1y0zA 78 :NDVVEAFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18385 # 1eyqA.73.114 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 73 :RAVIKSIGV 1eyqA 115 :VAHLKSVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18386 # 2f6hX.73.81 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 73 :RAVIKSIGV 2f6hX 103 :QKVVTQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18387 # 1y2qA.73.64 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 73 :RAVIKSIGV 1y2qA 65 :SKVAEQVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18388 # 1dlwA.73.85 read from T0287.t04.many.frag # found chain 1dlwA in training set T0287 73 :RAVIKSIGV 1dlwA 86 :RSALTGAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18389 # 1xp8A.73.193 read from T0287.t04.many.frag # found chain 1xp8A in template set T0287 73 :RAVIKSIGV 1xp8A 191 :TAILSKTGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18390 # 2f22A.73.123 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 2f22A 123 :YVALKQ T0287 80 :GV 2f22A 130 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18392 # 1pa7A.73.78 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 73 :RAVIKSIGV 1pa7A 79 :QAGFKRMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18393 # 1ve4A.73.19 read from T0287.t04.many.frag # found chain 1ve4A in template set T0287 73 :RAVIKSIGV 1ve4A 20 :YEVLKRAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18394 # 1f5mA.73.53 read from T0287.t04.many.frag # found chain 1f5mA in template set T0287 73 :RAVIKSIGV 1f5mA 54 :WHAYKSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18395 # 1a8o.73.48 read from T0287.t04.many.frag # found chain 1a8o in training set T0287 73 :RAVIKSIGV 1a8o 199 :KTILKALGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18396 # 1cxqA.73.120 read from T0287.t04.many.frag # found chain 1cxqA in training set T0287 73 :RAVIKSIGV 1cxqA 168 :RVLAEGDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18397 # 1k3yA.73.135 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 73 :RAVIKSI 1k3yA 137 :EKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=18398 # 1v4vA.73.83 read from T0287.t04.many.frag # found chain 1v4vA in training set T0287 73 :RAVIKSIGV 1v4vA 84 :ARALKEMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18399 # 2bu3A.73.139 read from T0287.t04.many.frag # found chain 2bu3A in template set Warning: unaligning (T0287)I79 (2bu3A)Y135 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 2bu3A 129 :GRLIAS T0287 80 :GV 2bu3A 136 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18401 # 1p4cA.73.333 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 73 :RAVIKSIGV 1p4cA 334 :DRTLAQIGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18402 # 1smbA.73.17 read from T0287.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)I79 (1smbA)H24 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1smbA 18 :NEYRQK T0287 80 :GV 1smbA 25 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18404 # 1s1dA.73.196 read from T0287.t04.many.frag # found chain 1s1dA in training set T0287 73 :RAVIKSIGV 1s1dA 197 :NALRAAAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18405 # 2f8lA.73.70 read from T0287.t04.many.frag # found chain 2f8lA in template set T0287 73 :RAVIKSIGV 2f8lA 59 :QASYESIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18406 # 1yviA.73.82 read from T0287.t04.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 T0287 73 :RAVIKSIG 1yviA 83 :KGSSASVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=18407 # 1pa7A.74.79 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 74 :AVIKSIGVD 1pa7A 80 :AGFKRMGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18408 # 2f5xA.74.301 read from T0287.t04.many.frag # found chain 2f5xA in template set T0287 74 :AVIKSIGVD 2f5xA 290 :ELFKKAGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18409 # 1iuqA.74.45 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 74 :AVIKSIGVD 1iuqA 47 :NAVIESGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18410 # 2mhr.74.59 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 74 :AVIKS 2mhr 60 :AMMDA T0287 81 :VD 2mhr 67 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18412 # 1smbA.74.18 read from T0287.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1smbA 19 :EYRQKHGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18413 # 1bxyA.74.20 read from T0287.t04.many.frag # found chain 1bxyA in template set T0287 74 :AVIKSIGVD 1bxyA 21 :AALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18414 # 1y0zA.74.78 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 74 :AVIKSIGVD 1y0zA 79 :DVVEAFGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18415 # 1eexA.74.420 read from T0287.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)I79 (1eexA)M426 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1eexA 421 :AVFAG T0287 80 :GVD 1eexA 427 :GLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18417 # 1psrA.74.43 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 74 :AVIKSIGVD 1psrA 44 :SACDKKGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18418 # 1f5mA.74.54 read from T0287.t04.many.frag # found chain 1f5mA in template set T0287 74 :AVIKSIGVD 1f5mA 55 :HAYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18419 # 1yqyA.74.59 read from T0287.t04.many.frag # found chain 1yqyA in template set T0287 74 :AVIKSIGVD 1yqyA 317 :ELLKRIQID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18420 # 1fjgT.74.89 read from T0287.t04.many.frag # found chain 1fjgT in template set T0287 74 :AVIKSIGVD 1fjgT 90 :QLLEAAGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18421 # 2f22A.74.124 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 74 :AVIKSIGVD 2f22A 124 :VALKQSGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18422 # 1t0fA.74.202 read from T0287.t04.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)G80 (1t0fA)G206 because H (helix) conformation "forbidden" or filtered. T0287 74 :AVIKSI 1t0fA 200 :HILQEK T0287 81 :VD 1t0fA 207 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18424 # 1z3eB.74.21 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 74 :AVIKSIGVD 1z3eB 264 :NCLKRAGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18425 # 1w0hA.74.160 read from T0287.t04.many.frag # found chain 1w0hA in training set T0287 74 :AVIKSIGVD 1w0hA 279 :IMLEKLGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18426 # 1q0uA.74.16 read from T0287.t04.many.frag # found chain 1q0uA in template set T0287 74 :AVIKSIGVD 1q0uA 17 :EAIKTLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18427 # 1eyqA.74.115 read from T0287.t04.many.frag # found chain 1eyqA in template set T0287 74 :AVIKSIGVD 1eyqA 116 :AHLKSVGTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18428 # 1ve4A.74.20 read from T0287.t04.many.frag # found chain 1ve4A in template set T0287 74 :AVIKSIGVD 1ve4A 21 :EVLKRAGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18429 # 1s1dA.74.197 read from T0287.t04.many.frag # found chain 1s1dA in training set T0287 74 :AVIKSIGVD 1s1dA 198 :ALRAAAGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18430 # 1k3yA.74.136 read from T0287.t04.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 74 :AVIKSI 1k3yA 138 :KVLKSH T0287 82 :D 1k3yA 146 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=18432 # 1y2qA.74.65 read from T0287.t04.many.frag # found chain 1y2qA in template set T0287 74 :AVIKSIGVD 1y2qA 66 :KVAEQVKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18433 # 1hw1A.74.197 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 74 :AVIKSIGVD 1hw1A 198 :ALCSEGAHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18434 # 1tqgA.74.49 read from T0287.t04.many.frag # found chain 1tqgA in training set Warning: unaligning (T0287)I79 (1tqgA)M54 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1tqgA 49 :GMAGT T0287 80 :GVD 1tqgA 55 :GFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18436 # 2f8lA.74.71 read from T0287.t04.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. T0287 74 :AVIKSI 2f8lA 60 :ASYESI T0287 81 :VD 2f8lA 67 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18438 # 2fokA.74.329 read from T0287.t04.many.frag # found chain 2fokA in template set T0287 74 :AVIKSIGVD 2fokA 330 :DNLKKLGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18439 # 1p4cA.74.334 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 74 :AVIKSIGVD 1p4cA 335 :RTLAQIGCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18440 # 8abp.74.122 read from T0287.t04.many.frag # found chain 8abp in training set T0287 74 :AVIKSIGVD 8abp 123 :KEMQKRGWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18441 # 2f6hX.74.82 read from T0287.t04.many.frag # found chain 2f6hX in template set T0287 74 :AVIKSIGVD 2f6hX 104 :KVVTQLKGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18442 # 1a62.74.15 read from T0287.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1a62 16 :TLGENMGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18443 # 1pa7A.75.80 read from T0287.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)I79 (1pa7A)M85 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1pa7A 81 :GFKR T0287 80 :GVDK 1pa7A 86 :GVDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18445 # 1smbA.75.19 read from T0287.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGV 1smbA 20 :YRQKHGV T0287 83 :K 1smbA 28 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18447 # 1iuqA.75.46 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 75 :VIKSIGVDK 1iuqA 48 :AVIESGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18448 # 1psrA.75.44 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 75 :VIKSIGVDK 1psrA 45 :ACDKKGTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18449 # 1y0zA.75.79 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 75 :VIKSIGVDK 1y0zA 80 :VVEAFGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18450 # 1iirA.75.172 read from T0287.t04.many.frag # found chain 1iirA in training set T0287 75 :VIKSIGVDK 1iirA 173 :HRDAIGLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18451 # 2f5xA.75.302 read from T0287.t04.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)I79 (2f5xA)A295 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 2f5xA 291 :LFKK T0287 80 :GVDK 2f5xA 296 :GVEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18453 # 1z3eB.75.22 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 75 :VIKSIGVDK 1z3eB 265 :CLKRAGINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18454 # 2f22A.75.125 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 2f22A 125 :ALKQ T0287 80 :GVDK 2f22A 130 :GINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18456 # 2fokA.75.330 read from T0287.t04.many.frag # found chain 2fokA in template set T0287 75 :VIKSIGVDK 2fokA 331 :NLKKLGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18457 # 1tqgA.75.50 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 75 :VIKSIGVDK 1tqgA 50 :MAGTMGFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18458 # 1uocA.75.231 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 75 :VIKSIGVDK 1uocA 232 :LADELGLPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18459 # 2mhr.75.60 read from T0287.t04.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 75 :VIKS 2mhr 61 :MMDA T0287 81 :VDK 2mhr 67 :YSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18461 # 1c1kA.75.122 read from T0287.t04.many.frag # found chain 1c1kA in training set T0287 75 :VIKSIGVDK 1c1kA 123 :FSKKVEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18462 # 1kr7A.75.89 read from T0287.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1kr7A 89 :ACSAHGAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18463 # 1eexA.75.421 read from T0287.t04.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1eexA)I431 T0287 75 :VIKSIGVD 1eexA 422 :VFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18464 # 1bxyA.75.21 read from T0287.t04.many.frag # found chain 1bxyA in template set Warning: unaligning (T0287)K83 (1bxyA)R30 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1bxyA 22 :ALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18465 # 1wu7A.75.247 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)D82 (1wu7A)K255 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKSIGV 1wu7A 248 :LLASYGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18466 # 1q0uA.75.17 read from T0287.t04.many.frag # found chain 1q0uA in template set T0287 75 :VIKSIGVDK 1q0uA 18 :AIKTLRFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18467 # 2ar0A.75.75 read from T0287.t04.many.frag # found chain 2ar0A in template set T0287 75 :VIKSIGVDK 2ar0A 76 :MLVHLGEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18468 # 1bc5A.75.41 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 75 :VIKSIGVDK 1bc5A 57 :RLRALGLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18469 # 1w0hA.75.161 read from T0287.t04.many.frag # found chain 1w0hA in training set T0287 75 :VIKSIGVDK 1w0hA 280 :MLEKLGMDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18470 # 1hw1A.75.198 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKS 1hw1A 199 :LCSE T0287 80 :GVDK 1hw1A 204 :AHDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18472 # 2f8lA.75.72 read from T0287.t04.many.frag # found chain 2f8lA in template set T0287 75 :VIKSIGVDK 2f8lA 61 :SYESIELEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18473 # 1ejbA.75.40 read from T0287.t04.many.frag # found chain 1ejbA in template set Warning: unaligning (T0287)D82 (1ejbA)E48 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGV 1ejbA 41 :RMASLGV T0287 83 :K 1ejbA 49 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=18475 # 1f5mA.75.55 read from T0287.t04.many.frag # found chain 1f5mA in template set T0287 75 :VIKSIGVDK 1f5mA 56 :AYKSLAVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18476 # 2cx1A.75.81 read from T0287.t04.many.frag # found chain 2cx1A in template set T0287 75 :VIKSIGVDK 2cx1A 81 :CLKAFGVDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18477 # 1wteA.75.42 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1wteA 43 :IFDYHSLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18478 # 8abp.75.123 read from T0287.t04.many.frag # found chain 8abp in training set T0287 75 :VIKSIGVDK 8abp 124 :EMQKRGWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18479 # 1p4cA.75.335 read from T0287.t04.many.frag # found chain 1p4cA in training set T0287 75 :VIKSIGVDK 1p4cA 336 :TLAQIGCPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18480 # 1iuqA.76.47 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 76 :IKSIGVDKF 1iuqA 49 :VIESGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18481 # 1iirA.76.173 read from T0287.t04.many.frag # found chain 1iirA in training set T0287 76 :IKSIGVDKF 1iirA 174 :RDAIGLPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18482 # 1smbA.76.20 read from T0287.t04.many.frag # found chain 1smbA in training set T0287 76 :IKSIGVDKF 1smbA 21 :RQKHGVPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18483 # 1kr7A.76.90 read from T0287.t04.many.frag # found chain 1kr7A in training set T0287 76 :IKSIGVDKF 1kr7A 90 :CSAHGAPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18484 # 1psrA.76.45 read from T0287.t04.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1psrA 46 :CDK T0287 80 :GVDKF 1psrA 50 :GTNYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18486 # 1pa7A.76.81 read from T0287.t04.many.frag # found chain 1pa7A in training set T0287 76 :IKSIGVDKF 1pa7A 82 :FKRMGVDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18487 # 1bc5A.76.42 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 76 :IKSIGVDKF 1bc5A 58 :LRALGLDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18488 # 1z3eB.76.23 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 76 :IKSIGVDKF 1z3eB 266 :LKRAGINTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18489 # 2ar0A.76.76 read from T0287.t04.many.frag # found chain 2ar0A in template set T0287 76 :IKSIGVDKF 2ar0A 77 :LVHLGEDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18490 # 2f22A.76.126 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)K83 (2f22A)L133 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 2f22A 126 :LKQSGIN T0287 84 :F 2f22A 134 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18492 # 1k8kG.76.82 read from T0287.t04.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1k8kG 83 :LISF T0287 81 :VDKF 1k8kG 88 :ANDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18494 # 1tqgA.76.51 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 76 :IKSIGVDKF 1tqgA 51 :AGTMGFSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18495 # 2fokA.76.331 read from T0287.t04.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)I79 (2fokA)L335 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 2fokA 332 :LKK T0287 80 :GVDKF 2fokA 336 :GFDEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18497 # 1c1kA.76.123 read from T0287.t04.many.frag # found chain 1c1kA in training set Warning: unaligning (T0287)I79 (1c1kA)V127 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1c1kA 124 :SKK T0287 80 :GVDKF 1c1kA 128 :EVSAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18499 # 1uocA.76.232 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)I79 (1uocA)L236 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1uocA 233 :ADE T0287 80 :GVDKF 1uocA 237 :GLPRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18501 # 1y0zA.76.80 read from T0287.t04.many.frag # found chain 1y0zA in template set T0287 76 :IKSIGVDKF 1y0zA 81 :VEAFGFDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18502 # 1wteA.76.43 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 76 :IKS 1wteA 44 :FDY T0287 80 :GVD 1wteA 48 :SLN T0287 84 :F 1wteA 52 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=18505 # 1ib2A.76.150 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)F84 (1ib2A)L986 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKSIGVDK 1ib2A 978 :IECVQPQS Number of specific fragments extracted= 1 number of extra gaps= 1 total=18506 # 1ejbA.76.41 read from T0287.t04.many.frag # found chain 1ejbA in template set Warning: unaligning (T0287)D82 (1ejbA)E48 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1ejbA 42 :MASLGV T0287 83 :KF 1ejbA 49 :EN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18508 # 2f5xA.76.303 read from T0287.t04.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)I79 (2f5xA)A295 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F84 because last residue in template chain is (2f5xA)Q300 T0287 76 :IKS 2f5xA 292 :FKK T0287 80 :GVDK 2f5xA 296 :GVEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18510 # 1wu7A.76.248 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1wu7A 249 :LASYGVK T0287 84 :F 1wu7A 257 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18512 # 1usgA.76.290 read from T0287.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0287)K83 (1usgA)E298 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1usgA 291 :LERTGSD T0287 84 :F 1usgA 299 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18514 # 2f8lA.76.73 read from T0287.t04.many.frag # found chain 2f8lA in template set T0287 76 :IKSIGVDKF 2f8lA 62 :YESIELENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18515 # 1hw1A.76.199 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 76 :IKSIGVDKF 1hw1A 200 :CSEGAHDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18516 # 2c5uA.76.329 read from T0287.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)V81 (2c5uA)M334 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKSIG 2c5uA 329 :AKGAG T0287 82 :DKF 2c5uA 335 :DHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18518 # 1rp4A.76.271 read from T0287.t04.many.frag # found chain 1rp4A in template set Warning: unaligning (T0287)G80 (1rp4A)D314 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1rp4A 310 :ISQL T0287 81 :VDKF 1rp4A 315 :TKIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18520 # 1oqjA.76.48 read from T0287.t04.many.frag # found chain 1oqjA in training set T0287 76 :IKSIGVDKF 1oqjA 134 :VHLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18521 # 2cx1A.76.82 read from T0287.t04.many.frag # found chain 2cx1A in template set T0287 76 :IKSIGVDKF 2cx1A 82 :LKAFGVDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18522 # 1ojrA.76.259 read from T0287.t04.many.frag # found chain 1ojrA in training set T0287 76 :IKSIGVDKF 1ojrA 260 :GKRFGVTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18523 # 1a62.76.17 read from T0287.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)K83 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1a62 18 :GENMGLE T0287 84 :F 1a62 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=18525 # 1iuqA.77.48 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 77 :KSIGVDKFK 1iuqA 50 :IESGNPKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18526 # 1iirA.77.174 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K85 (1iirA)E183 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSIGVDKF 1iirA 175 :DAIGLPPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18527 # 1k8kG.77.83 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 77 :KSIGVDKFK 1k8kG 84 :ISFKANDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18528 # 1bc5A.77.43 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 77 :KSIGVDKFK 1bc5A 59 :RALGLDDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18529 # 1kr7A.77.91 read from T0287.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)I79 (1kr7A)H93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KS 1kr7A 91 :SA T0287 80 :GV 1kr7A 94 :GA T0287 83 :KFK 1kr7A 97 :DLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=18532 # 1smbA.77.21 read from T0287.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)K83 (1smbA)P28 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGVD 1smbA 22 :QKHGVP T0287 84 :FK 1smbA 29 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18534 # 1hw1A.77.200 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1hw1A 201 :SEG T0287 81 :VDKFK 1hw1A 205 :HDQVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18536 # 1tqgA.77.52 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 77 :KSIGVDKFK 1tqgA 52 :GTMGFSSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18537 # 1wteA.77.44 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KS 1wteA 45 :DY T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FK 1wteA 52 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=18540 # 1z3eB.77.24 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 77 :KSIGVDKFK 1z3eB 267 :KRAGINTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18541 # 1pa7A.77.82 read from T0287.t04.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)I79 (1pa7A)M85 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1pa7A 83 :KR T0287 80 :GVDKFK 1pa7A 86 :GVDKII Number of specific fragments extracted= 2 number of extra gaps= 1 total=18543 # 1ib2A.77.151 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F84 (1ib2A)L986 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSI 1ib2A 979 :ECV T0287 81 :VD 1ib2A 983 :PQ T0287 85 :K 1ib2A 987 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=18546 # 1psrA.77.46 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 77 :KSIGVDKFK 1psrA 47 :DKKGTNYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18547 # 1c1kA.77.124 read from T0287.t04.many.frag # found chain 1c1kA in training set Warning: unaligning (T0287)I79 (1c1kA)V127 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1c1kA 125 :KK T0287 80 :GVDKFK 1c1kA 128 :EVSAFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18549 # 2f22A.77.127 read from T0287.t04.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)D82 (2f22A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGV 2f22A 127 :KQSGI T0287 83 :KFK 2f22A 133 :LPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18551 # 1uocA.77.233 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 77 :KSIGVDKFK 1uocA 234 :DELGLPRFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18552 # 2ar0A.77.77 read from T0287.t04.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)G80 (2ar0A)G81 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSI 2ar0A 78 :VHL T0287 81 :VDKFK 2ar0A 82 :EDDKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18554 # 2c5uA.77.330 read from T0287.t04.many.frag # found chain 2c5uA in template set T0287 77 :KSIGVDKFK 2c5uA 330 :KGAGMDHLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18555 # 2f8lA.77.74 read from T0287.t04.many.frag # found chain 2f8lA in template set T0287 77 :KSIGVDKFK 2f8lA 63 :ESIELENFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18556 # 1usgA.77.291 read from T0287.t04.many.frag # found chain 1usgA in training set T0287 77 :KSIGVDKFK 1usgA 292 :ERTGSDEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18557 # 2fokA.77.332 read from T0287.t04.many.frag # found chain 2fokA in template set T0287 77 :KSIGVDKFK 2fokA 333 :KKLGFDEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18558 # 1wu7A.77.249 read from T0287.t04.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)D82 (1wu7A)K255 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K85 (1wu7A)R258 because E (beta_S) conformation "forbidden" or filtered. T0287 77 :KSIGV 1wu7A 250 :ASYGV T0287 84 :F 1wu7A 257 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=18560 # 1ezwA.77.275 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 77 :KSIGVDKFK 1ezwA 276 :EAIGKGDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18561 # 1oqjA.77.49 read from T0287.t04.many.frag # found chain 1oqjA in training set T0287 77 :KSIGVDKFK 1oqjA 135 :HLAGKSTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18562 # 1jy1A.77.183 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 77 :KSIGVDKFK 1jy1A 328 :TAYNAPSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18563 # 1h6gA.77.154 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 77 :KS 1h6gA 531 :QE T0287 80 :GVDKFK 1h6gA 534 :DVDGLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18565 # 1a62.77.18 read from T0287.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0287 77 :KSIGV 1a62 19 :ENMGL T0287 84 :FK 1a62 26 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18567 # 1yviA.77.86 read from T0287.t04.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1yviA)Q92 T0287 77 :KSIG 1yviA 87 :ASVG T0287 83 :KFK 1yviA 93 :KVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18569 # 1q9uA.77.103 read from T0287.t04.many.frag # found chain 1q9uA in training set T0287 77 :KSIGVDKFK 1q9uA 101 :GMMNDPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18570 # 1sedA.77.62 read from T0287.t04.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSIGVDK 1sedA 61 :KAQGFVT T0287 85 :K 1sedA 69 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=18572 # 1k8kG.78.84 read from T0287.t04.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SI 1k8kG 85 :SF T0287 81 :VDKFKK 1k8kG 88 :ANDIEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18574 # 1bc5A.78.44 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 78 :SIGVDKFKK 1bc5A 60 :ALGLDDFGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18575 # 1iuqA.78.49 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 78 :SIGVDKFKK 1iuqA 51 :ESGNPKADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18576 # 1wteA.78.45 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 1wteA 46 :Y T0287 80 :GVDKFKK 1wteA 48 :SLNDFDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18578 # 1hw1A.78.201 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 78 :S 1hw1A 202 :E T0287 80 :GVDKFKK 1hw1A 204 :AHDQVYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18580 # 1kr7A.78.92 read from T0287.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1kr7A 92 :AHGA T0287 83 :KFKK 1kr7A 97 :DLGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18582 # 1iirA.78.175 read from T0287.t04.many.frag # found chain 1iirA in training set T0287 78 :SIGVDKFKK 1iirA 176 :AIGLPPVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=18583 # 1ib2A.78.152 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SI 1ib2A 980 :CV T0287 81 :VD 1ib2A 983 :PQ T0287 84 :FKK 1ib2A 986 :LQF Number of specific fragments extracted= 3 number of extra gaps= 2 total=18586 # 1tqgA.78.53 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 78 :SIGVDKFKK 1tqgA 53 :TMGFSSMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18587 # 1z3eB.78.25 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 78 :SIGVDKFKK 1z3eB 268 :RAGINTVQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18588 # 1h6gA.78.155 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 78 :S 1h6gA 532 :E T0287 80 :GVDKFKK 1h6gA 534 :DVDGLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18590 # 1c1kA.78.125 read from T0287.t04.many.frag # found chain 1c1kA in training set Warning: unaligning (T0287)I79 (1c1kA)V127 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 1c1kA 126 :K T0287 80 :GVDKFKK 1c1kA 128 :EVSAFKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18592 # 1jy1A.78.184 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 78 :SIGVDKFKK 1jy1A 329 :AYNAPSLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18593 # 1smbA.78.22 read from T0287.t04.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)I79 (1smbA)H24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0287 78 :S 1smbA 23 :K T0287 80 :GV 1smbA 25 :GV T0287 83 :KFK 1smbA 28 :PLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=18596 # 1sedA.78.63 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 78 :SIGVDKFKK 1sedA 62 :AQGFVTFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18597 # 2aeuA.78.252 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 78 :SIGVDKFKK 2aeuA 253 :NFNLERIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18598 # 2c5uA.78.331 read from T0287.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)F84 (2c5uA)L337 because G (3-10) conformation "forbidden" or filtered. T0287 78 :SIGVDK 2c5uA 331 :GAGMDH T0287 85 :KK 2c5uA 338 :FG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18600 # 1ezwA.78.276 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 78 :SIGV 1ezwA 277 :AIGK T0287 83 :KFKK 1ezwA 282 :DFGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18602 # 1u00A.78.186 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 78 :SIGVDKFKK 1u00A 575 :GDDVDAIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18603 # 1usgA.78.292 read from T0287.t04.many.frag # found chain 1usgA in training set T0287 78 :SIGVDKFKK 1usgA 293 :RTGSDEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18604 # 1psrA.78.47 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 78 :SIGVDKFKK 1psrA 48 :KKGTNYLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18605 # 1sqsA.78.217 read from T0287.t04.many.frag # found chain 1sqsA in training set T0287 78 :SIGVDKFKK 1sqsA 218 :LFEANSLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18606 # 1zhxA.78.329 read from T0287.t04.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)I79 (1zhxA)G327 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1zhxA)D328 because N (gamma') conformation "forbidden" or filtered. T0287 78 :S 1zhxA 326 :L T0287 81 :VDKFKK 1zhxA 329 :FNLIAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18608 # 1owlA.78.266 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 78 :SIGVDKFKK 1owlA 267 :LSRSDEARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18609 # 2f22A.78.128 read from T0287.t04.many.frag # found chain 2f22A in template set T0287 78 :SIGVDKFKK 2f22A 128 :QSGINLPKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18610 # 1lo7A.78.40 read from T0287.t04.many.frag # found chain 1lo7A in training set T0287 78 :SIGVDKFKK 1lo7A 41 :KCGLPPWRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18611 # 2fbqA.78.121 read from T0287.t04.many.frag # found chain 2fbqA in template set Warning: unaligning (T0287)I79 (2fbqA)Q121 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 2fbqA 120 :S T0287 80 :GVDKFKK 2fbqA 122 :SQGHLRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18613 # 1uvjA.78.179 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 78 :SIGV 1uvjA 180 :LMLQ T0287 83 :KFKK 1uvjA 185 :KFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18615 # 1uocA.78.234 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)D82 (1uocA)P239 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :SIGV 1uocA 235 :ELGL T0287 83 :KFKK 1uocA 240 :RFSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18617 # 1q9uA.78.104 read from T0287.t04.many.frag # found chain 1q9uA in training set T0287 78 :SIGVDKFKK 1q9uA 102 :MMNDPALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18618 # 1bc5A.79.45 read from T0287.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1bc5A 62 :GLDDFGRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=18619 # 1k8kG.79.85 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 79 :IGVDKFKKV 1k8kG 86 :FKANDIEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18620 # 1wteA.79.46 read from T0287.t04.many.frag # found chain 1wteA in template set T0287 79 :IGVDKFKKV 1wteA 47 :HSLNDFDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18621 # 1hw1A.79.202 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKV 1hw1A 205 :HDQVYET Number of specific fragments extracted= 1 number of extra gaps= 1 total=18622 # 1h6gA.79.156 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKV 1h6gA 535 :VDGLDRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18623 # 1sedA.79.64 read from T0287.t04.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IGVDK 1sedA 63 :QGFVT T0287 85 :KKV 1sedA 69 :DKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18625 # 1ib2A.79.153 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)K83 (1ib2A)S985 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IGVD 1ib2A 981 :VQPQ T0287 84 :FKKV 1ib2A 986 :LQFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18627 # 1kr7A.79.93 read from T0287.t04.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :IGV 1kr7A 93 :HGA T0287 83 :KFKKV 1kr7A 97 :DLGHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18629 # 1iuqA.79.50 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 79 :IGVDKFKKV 1iuqA 52 :SGNPKADEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18630 # 1iirA.79.176 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K86 (1iirA)D184 because D (zeta) conformation "forbidden" or filtered. T0287 79 :IGVDKFK 1iirA 177 :IGLPPVE T0287 87 :V 1iirA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=18632 # 2aeuA.79.253 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 79 :IGVDKFKKV 2aeuA 254 :FNLERIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18633 # 1uvjA.79.180 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 79 :IGV 1uvjA 181 :MLQ T0287 83 :KFKKV 1uvjA 185 :KFDDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18635 # 2fbqA.79.122 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 79 :IGVDKFKKV 2fbqA 121 :QSQGHLRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18636 # 1zhxA.79.330 read from T0287.t04.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)I79 (1zhxA)G327 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1zhxA 328 :DFNLIAKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18637 # 1u00A.79.187 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 79 :IGVDKFKKV 1u00A 576 :DDVDAIEQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18638 # 1ezwA.79.277 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 79 :IGVDKFKKV 1ezwA 278 :IGKGDFGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18639 # 2f6kA.79.131 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 79 :IGVDKFKKV 2f6kA 132 :FGSPVLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18640 # 1jy1A.79.185 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 79 :IGVDKFKKV 1jy1A 330 :YNAPSLKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18641 # 1z3eB.79.26 read from T0287.t04.many.frag # found chain 1z3eB in template set T0287 79 :IGVDKFKKV 1z3eB 269 :AGINTVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18642 # 1sqsA.79.218 read from T0287.t04.many.frag # found chain 1sqsA in training set T0287 79 :IGVDKFKKV 1sqsA 219 :FEANSLEEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18643 # 1owlA.79.267 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 79 :IGVDKFKKV 1owlA 268 :SRSDEARNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18644 # 1z3xA.79.107 read from T0287.t04.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 79 :IGV 1z3xA 105 :LVA T0287 83 :KFKKV 1z3xA 109 :KFEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18646 # 1tqgA.79.54 read from T0287.t04.many.frag # found chain 1tqgA in training set T0287 79 :IGVDKFKKV 1tqgA 54 :MGFSSMAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18647 # 1xm9A.79.430 read from T0287.t04.many.frag # found chain 1xm9A in template set T0287 79 :IGVDKFKKV 1xm9A 674 :SASPKAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18648 # 1c1kA.79.126 read from T0287.t04.many.frag # found chain 1c1kA in training set T0287 79 :IGVDKFKKV 1c1kA 127 :VEVSAFKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18649 # 1usgA.79.293 read from T0287.t04.many.frag # found chain 1usgA in training set T0287 79 :IGVDKFKKV 1usgA 294 :TGSDEPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18650 # 1rwhA.79.27 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 79 :IGVDKFKKV 1rwhA 28 :AGDPDFAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18651 # 2anuA.79.76 read from T0287.t04.many.frag # found chain 2anuA in template set T0287 79 :IGVDKFKKV 2anuA 65 :ITEDKFQDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18652 # 2c5uA.79.332 read from T0287.t04.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)F84 (2c5uA)L337 because G (3-10) conformation "forbidden" or filtered. T0287 79 :IGVDK 2c5uA 332 :AGMDH T0287 85 :KKV 2c5uA 338 :FGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18654 # 1psrA.79.48 read from T0287.t04.many.frag # found chain 1psrA in training set T0287 79 :IGVDKFKKV 1psrA 49 :KGTNYLADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18655 # 1bc5A.80.46 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 80 :GVDKFKKVY 1bc5A 62 :GLDDFGRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18656 # 1k8kG.80.86 read from T0287.t04.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1k8kG 88 :ANDIEKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18657 # 1sedA.80.65 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 80 :GVDKFKKVY 1sedA 64 :GFVTFDKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18658 # 1ib2A.80.154 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1ib2A 983 :PQSLQFII Number of specific fragments extracted= 1 number of extra gaps= 1 total=18659 # 1wteA.80.47 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FKKVY 1wteA 52 :FDELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18661 # 1h6gA.80.157 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1h6gA 535 :VDGLDRTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18662 # 1hw1A.80.203 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1hw1A 205 :HDQVYETV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18663 # 1uvjA.80.181 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 80 :GV 1uvjA 182 :LQ T0287 83 :KFKKVY 1uvjA 185 :KFDDAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18665 # 2f6kA.80.132 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 80 :GVDKFKKVY 2f6kA 133 :GSPVLERVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18666 # 1ezwA.80.278 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 80 :GV 1ezwA 279 :GK T0287 83 :KFKKVY 1ezwA 282 :DFGTAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18668 # 1rwhA.80.28 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 80 :GVDKFKKVY 1rwhA 29 :GDPDFAKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18669 # 2aeuA.80.254 read from T0287.t04.many.frag # found chain 2aeuA in template set Warning: unaligning (T0287)G80 (2aeuA)N255 because E (beta_S) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 2aeuA 256 :LERIRKAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=18670 # 1zhxA.80.331 read from T0287.t04.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)G80 (1zhxA)D328 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1zhxA 329 :FNLIAKTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18671 # 1z3xA.80.108 read from T0287.t04.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 80 :GV 1z3xA 106 :VA T0287 83 :KFKKVY 1z3xA 109 :KFEAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18673 # 2anuA.80.77 read from T0287.t04.many.frag # found chain 2anuA in template set T0287 80 :GVDKFKKVY 2anuA 66 :TEDKFQDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18674 # 1owlA.80.268 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 80 :GVDKFKKVY 1owlA 269 :RSDEARNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18675 # 1u00A.80.188 read from T0287.t04.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1u00A 578 :VDAIEQAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18676 # 2fbqA.80.123 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 80 :GVDKFKKVY 2fbqA 122 :SQGHLRKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18677 # 1sqsA.80.219 read from T0287.t04.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1sqsA 220 :EAN T0287 84 :FKKVY 1sqsA 224 :LEEWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18679 # 1kr7A.80.94 read from T0287.t04.many.frag # found chain 1kr7A in training set T0287 80 :GVDKFKKVY 1kr7A 94 :GAPDLGHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18680 # 1iuqA.80.51 read from T0287.t04.many.frag # found chain 1iuqA in training set T0287 80 :GVDKFKKVY 1iuqA 53 :GNPKADEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18681 # 1e9rA.80.164 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 80 :GVDKFKKVY 1e9rA 235 :GTPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18682 # 1jy1A.80.186 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 80 :GVDKFKKVY 1jy1A 331 :NAPSLKEWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18683 # 1usgA.80.294 read from T0287.t04.many.frag # found chain 1usgA in training set Warning: unaligning (T0287)K83 (1usgA)E298 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GVD 1usgA 295 :GSD T0287 84 :FKKVY 1usgA 299 :PLALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18685 # 1iirA.80.177 read from T0287.t04.many.frag # found chain 1iirA in training set T0287 80 :GVDKFKKVY 1iirA 178 :GLPPVEDIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18686 # 1j79A.80.145 read from T0287.t04.many.frag # found chain 1j79A in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1j79A)I147 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1j79A)I147 Warning: unaligning (T0287)K85 (1j79A)D151 because G (3-10) conformation "forbidden" or filtered. T0287 82 :DKF 1j79A 148 :DIF T0287 86 :KVY 1j79A 152 :REA Number of specific fragments extracted= 2 number of extra gaps= 2 total=18688 # 1rcwA.80.192 read from T0287.t04.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)G80 (1rcwA)L193 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1rcwA 194 :KDDADKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18689 # 2cc3A.80.25 read from T0287.t04.many.frag # found chain 2cc3A in template set T0287 80 :GVDKFKKVY 2cc3A 113 :DADTAQYAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18690 # 2bz1A.80.96 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 80 :GVDKFKKVY 2bz1A 97 :GLLNKIRAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18691 # 1gvdA.80.21 read from T0287.t04.many.frag # found chain 1gvdA in training set Warning: unaligning (T0287)G80 (1gvdA)G111 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1gvdA)R114 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VD 1gvdA 112 :PK T0287 84 :FKKVY 1gvdA 115 :WSVIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=18693 # 1k8kG.81.87 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 81 :VDKFKKVYR 1k8kG 88 :ANDIEKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18694 # 1bc5A.81.47 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 81 :VDKFKKVYR 1bc5A 63 :LDDFGRYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18695 # 1h6gA.81.158 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 81 :VDKFKKVYR 1h6gA 535 :VDGLDRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18696 # 1sedA.81.66 read from T0287.t04.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)K83 (1sedA)T67 because E (beta_S) conformation "forbidden" or filtered. T0287 81 :VD 1sedA 65 :FV T0287 84 :FKKVYR 1sedA 68 :FDKLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18698 # 1hw1A.81.204 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 81 :VDKFKKVYR 1hw1A 205 :HDQVYETVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18699 # 2f6kA.81.133 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 81 :VDKFKKVYR 2f6kA 134 :SPVLERVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18700 # 1ib2A.81.155 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 81 :VDKFKKVYR 1ib2A 983 :PQSLQFIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18701 # 2aeuA.81.255 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 81 :VDKFKKVYR 2aeuA 256 :LERIRKAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18702 # 1uvjA.81.182 read from T0287.t04.many.frag # found chain 1uvjA in template set T0287 81 :VDKFKKVYR 1uvjA 183 :QGKFDDAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18703 # 1rwhA.81.29 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 81 :VDKFKKVYR 1rwhA 30 :DPDFAKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18704 # 1wteA.81.48 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 81 :VD 1wteA 49 :LN T0287 84 :FKKVYR 1wteA 52 :FDELVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18706 # 1pb7A.81.187 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 81 :VDKFKKVYR 1pb7A 188 :QVELSTMYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18707 # 1ezwA.81.279 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 81 :VDKFKKVYR 1ezwA 280 :KGDFGTAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18708 # 1z3xA.81.109 read from T0287.t04.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 81 :V 1z3xA 107 :A T0287 83 :KFKKVYR 1z3xA 109 :KFEAADR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18710 # 1zhxA.81.332 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 81 :VDKFKKVYR 1zhxA 329 :FNLIAKTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18711 # 1u00A.81.189 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 81 :VDKFKKVYR 1u00A 578 :VDAIEQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18712 # 2anuA.81.78 read from T0287.t04.many.frag # found chain 2anuA in template set T0287 81 :VDKFKKVYR 2anuA 67 :EDKFQDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18713 # 2fbqA.81.124 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 81 :VDKFKKVYR 2fbqA 123 :QGHLRKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18714 # 1lugA.81.151 read from T0287.t04.many.frag # found chain 1lugA in training set T0287 81 :VDKFKKVYR 1lugA 153 :KPGLQKVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18715 # 1owlA.81.269 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 81 :VDKFKKVYR 1owlA 270 :SDEARNSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18716 # 1m2oA.81.541 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 81 :VDKFKKVYR 1m2oA 542 :TDDGADVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18717 # 1e9rA.81.165 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 81 :VDKFKKVYR 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18718 # 2b6cA.81.121 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 82 :DKFKKVYR 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18719 # 1aa7A.81.105 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 81 :VDKFKKVYR 1aa7A 106 :EITFHGAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18720 # 1jy1A.81.187 read from T0287.t04.many.frag # found chain 1jy1A in training set T0287 81 :VDKFKKVYR 1jy1A 332 :APSLKEWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18721 # 2bz1A.81.97 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 81 :VDKFKKVYR 2bz1A 98 :LLNKIRAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18722 # 1yw3A.81.115 read from T0287.t04.many.frag # found chain 1yw3A in template set T0287 81 :VDKFKKVYR 1yw3A 116 :AENFQPWSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18723 # 2ae5B.81.320 read from T0287.t04.many.frag # found chain 2ae5B in template set T0287 81 :VDKFKKVYR 2ae5B 321 :DPEVQAAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18724 # 1iirA.81.178 read from T0287.t04.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K83 (1iirA)P181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K85 (1iirA)E183 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VD 1iirA 179 :LP T0287 84 :F 1iirA 182 :V T0287 86 :KVYR 1iirA 184 :DIFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=18727 # 2cc3A.81.26 read from T0287.t04.many.frag # found chain 2cc3A in template set T0287 81 :VDKFKKVYR 2cc3A 114 :ADTAQYAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18728 # 1k8kG.82.88 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 82 :DKFKKVYRL 1k8kG 89 :NDIEKAVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18729 # 1h6gA.82.159 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 82 :DKFKKVYRL 1h6gA 536 :DGLDRTAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18730 # 1hw1A.82.205 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 82 :DKFKKVYRL 1hw1A 206 :DQVYETVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18731 # 1sedA.82.67 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 82 :DKFKKVYRL 1sedA 66 :VTFDKLLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18732 # 2f6kA.82.134 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 82 :DKFKKVYRL 2f6kA 135 :PVLERVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18733 # 1ib2A.82.156 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 82 :DKFKKVYRL 1ib2A 984 :QSLQFIIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18734 # 1m2oA.82.542 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 82 :DKFKKVYRL 1m2oA 543 :DDGADVIRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18735 # 1pb7A.82.188 read from T0287.t04.many.frag # found chain 1pb7A in training set Warning: unaligning (T0287)F84 (1pb7A)L191 because G (3-10) conformation "forbidden" or filtered. T0287 82 :DK 1pb7A 189 :VE T0287 85 :KKVYRL 1pb7A 192 :STMYRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18737 # 1bc5A.82.48 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 82 :DKFKKVYRL 1bc5A 64 :DDFGRYLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18738 # 1rwhA.82.30 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 82 :DKFKKVYRL 1rwhA 31 :PDFAKAITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18739 # 2aeuA.82.256 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 82 :DKFKKVYRL 2aeuA 257 :ERIRKAFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=18740 # 1ezwA.82.280 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1ezwA 282 :DFGTAIGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18741 # 1uvjA.82.183 read from T0287.t04.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1uvjA 185 :KFDDAYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18742 # 1zhxA.82.333 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 82 :DKFKKVYRL 1zhxA 330 :NLIAKTKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18743 # 1z3xA.82.110 read from T0287.t04.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1z3xA 109 :KFEAADRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18744 # 1e9rA.82.166 read from T0287.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)D82 (1e9rA)P237 because N (gamma') conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1e9rA 238 :SMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 1 total=18745 # 2b6cA.82.122 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 82 :DKFKKVYRL 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18746 # 1u00A.82.190 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 82 :DKFKKVYRL 1u00A 579 :DAIEQAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18747 # 1lugA.82.152 read from T0287.t04.many.frag # found chain 1lugA in training set T0287 82 :DKFKKVYRL 1lugA 154 :PGLQKVVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18748 # 2bz1A.82.98 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 82 :DKFKKVYRL 2bz1A 99 :LNKIRAYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18749 # 1sz9A.82.87 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 82 :DKFKKVYRL 1sz9A 88 :NLYKRTYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18750 # 1aa7A.82.106 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 82 :DKFKKVYRL 1aa7A 107 :ITFHGAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18751 # 1wteA.82.49 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 82 :D 1wteA 50 :N T0287 84 :FKKVYRL 1wteA 52 :FDELVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18753 # 1owlA.82.270 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 82 :DKFKKVYRL 1owlA 271 :DEARNSIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18754 # 2ae5B.82.321 read from T0287.t04.many.frag # found chain 2ae5B in template set T0287 82 :DKFKKVYRL 2ae5B 322 :PEVQAAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18755 # 1vykA.82.127 read from T0287.t04.many.frag # found chain 1vykA in template set T0287 82 :DKFKKVYRL 1vykA 128 :TEAEKYYGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18756 # 1j93A.82.167 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 82 :DKFKKVYRL 1j93A 167 :KNFTKIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18757 # 1xkpA.82.118 read from T0287.t04.many.frag # found chain 1xkpA in training set T0287 82 :DKFKKVYRL 1xkpA 150 :PELAHLSHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18758 # 1qs1A.82.304 read from T0287.t04.many.frag # found chain 1qs1A in training set T0287 82 :DKFKKVYRL 1qs1A 305 :QDYKEINNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18759 # 1ae9A.82.6 read from T0287.t04.many.frag # found chain 1ae9A in template set T0287 82 :DKFKKVYRL 1ae9A 183 :DEYLKIYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18760 # 1k8kG.83.89 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 83 :KFKKVYRLL 1k8kG 90 :DIEKAVQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18761 # 1hw1A.83.206 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 83 :KFKKVYRLL 1hw1A 207 :QVYETVRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18762 # 1m2oA.83.543 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 83 :KFKKVYRLL 1m2oA 544 :DGADVIRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18763 # 1h6gA.83.160 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 83 :KFKKVYRLL 1h6gA 537 :GLDRTAGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18764 # 2f6kA.83.135 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 83 :KFKKVYRLL 2f6kA 136 :VLERVYQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18765 # 1sedA.83.68 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 83 :KFKKVYRLL 1sedA 67 :TFDKLLALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18766 # 1pb7A.83.189 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 83 :KFKKVYRLL 1pb7A 190 :ELSTMYRHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18767 # 1sz9A.83.88 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 83 :KFKKVYRLL 1sz9A 89 :LYKRTYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18768 # 1rwhA.83.31 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 83 :KFKKVYRLL 1rwhA 32 :DFAKAITAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18769 # 1ib2A.83.157 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 83 :KFKKVYRLL 1ib2A 985 :SLQFIIDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18770 # 1bc5A.83.49 read from T0287.t04.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)K83 (1bc5A)D65 because E (beta_S) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1bc5A 66 :FGRYLSML Number of specific fragments extracted= 1 number of extra gaps= 1 total=18771 # 2aeuA.83.257 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 83 :KFKKVYRLL 2aeuA 258 :RIRKAFERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18772 # 1e9rA.83.167 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 83 :KFKKVYRLL 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18773 # 1u00A.83.191 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 83 :KFKKVYRLL 1u00A 580 :AIEQAIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18774 # 1zhxA.83.334 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 83 :KFKKVYRLL 1zhxA 331 :LIAKTKTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18775 # 1vykA.83.128 read from T0287.t04.many.frag # found chain 1vykA in template set T0287 83 :KFKKVYRLL 1vykA 129 :EAEKYYGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18776 # 1owlA.83.271 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 83 :KFKKVYRLL 1owlA 272 :EARNSIRVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=18777 # 1z3xA.83.111 read from T0287.t04.many.frag # found chain 1z3xA in template set T0287 83 :KFKKVYRLL 1z3xA 109 :KFEAADRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18778 # 1uvjA.83.184 read from T0287.t04.many.frag # found chain 1uvjA in template set T0287 83 :KFKKVYRLL 1uvjA 185 :KFDDAYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18779 # 2bz1A.83.99 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 83 :KFKKVYRLL 2bz1A 100 :NKIRAYALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18780 # 2b6cA.83.123 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)K83 (2b6cA)E121 because G (3-10) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2b6cA 122 :LPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=18781 # 2audA.83.70 read from T0287.t04.many.frag # found chain 2audA in template set T0287 83 :KFKKVYRLL 2audA 72 :GHEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18782 # 1k55A.83.98 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 83 :KFKKVYRLL 1k55A 119 :VFQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18783 # 1ae9A.83.7 read from T0287.t04.many.frag # found chain 1ae9A in template set T0287 83 :KFKKVYRLL 1ae9A 184 :EYLKIYQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18784 # 1ezwA.83.281 read from T0287.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)K83 (1ezwA)D282 because N (gamma') conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1ezwA 283 :FGTAIGLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18785 # 1zj8A.83.152 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 83 :KFKKVYRLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18786 # 1aa7A.83.107 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 83 :KFKKVYRLL 1aa7A 108 :TFHGAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18787 # 2fbqA.83.126 read from T0287.t04.many.frag # found chain 2fbqA in template set T0287 83 :KFKKVYRLL 2fbqA 125 :HLRKYLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18788 # 1zybA.83.135 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 83 :KFKKVYRLL 1zybA 124 :IFRLNYMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18789 # 1j93A.83.168 read from T0287.t04.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)F84 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 83 :K 1j93A 168 :N T0287 85 :KKVYRLL 1j93A 170 :TKIKRLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18791 # 1m2oA.84.544 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 84 :FKKVYRLLE 1m2oA 545 :GADVIRWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18792 # 1k8kG.84.90 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 84 :FKKVYRLLE 1k8kG 91 :IEKAVQSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18793 # 1hw1A.84.207 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 84 :FKKVYRLLE 1hw1A 208 :VYETVRRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18794 # 1h6gA.84.161 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 84 :FKKVYRLLE 1h6gA 538 :LDRTAGAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18795 # 2f6kA.84.136 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 84 :FKKVYRLLE 2f6kA 137 :LERVYQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18796 # 1pb7A.84.190 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 84 :FKKVYRLLE 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=18797 # 1sz9A.84.89 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 84 :FKKVYRLLE 1sz9A 90 :YKRTYLLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18798 # 2audA.84.71 read from T0287.t04.many.frag # found chain 2audA in template set T0287 84 :FKKVYRLLE 2audA 73 :HEARYKLFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18799 # 1rwhA.84.32 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 84 :FKKVYRLLE 1rwhA 33 :FAKAITALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18800 # 1sedA.84.69 read from T0287.t04.many.frag # found chain 1sedA in template set T0287 84 :FKKVYRLLE 1sedA 68 :FDKLLALFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18801 # 1e9rA.84.168 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 84 :FKKVYRLLE 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18802 # 1ib2A.84.158 read from T0287.t04.many.frag # found chain 1ib2A in template set T0287 84 :FKKVYRLLE 1ib2A 986 :LQFIIDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18803 # 1k55A.84.99 read from T0287.t04.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1k55A 120 :FQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18804 # 1qmgA.84.297 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 84 :FKKVYRLLE 1qmgA 369 :MLALYNSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18805 # 1u00A.84.192 read from T0287.t04.many.frag # found chain 1u00A in template set T0287 84 :FKKVYRLLE 1u00A 581 :IEQAIKNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18806 # 1bc5A.84.50 read from T0287.t04.many.frag # found chain 1bc5A in template set T0287 84 :FKKVYRLLE 1bc5A 66 :FGRYLSMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18807 # 2bz1A.84.100 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 84 :FKKVYRLLE 2bz1A 101 :KIRAYALQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18808 # 1ezwA.84.282 read from T0287.t04.many.frag # found chain 1ezwA in training set T0287 84 :FKKVYRLLE 1ezwA 283 :FGTAIGLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18809 # 1bf5A.84.49 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 84 :FKKVYRLLE 1bf5A 199 :LKKMYLMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18810 # 1zhxA.84.335 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 84 :FKKVYRLLE 1zhxA 332 :IAKTKTELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18811 # 1zj8A.84.153 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 84 :FKKVYRLLE 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18812 # 2fkcA.84.145 read from T0287.t04.many.frag # found chain 2fkcA in template set T0287 84 :FKKVYRLLE 2fkcA 146 :QNIVLNWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18813 # 1owlA.84.272 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 84 :FKKVYRLLE 1owlA 273 :ARNSIRVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18814 # 2aeuA.84.258 read from T0287.t04.many.frag # found chain 2aeuA in template set T0287 84 :FKKVYRLLE 2aeuA 259 :IRKAFERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18815 # 1j93A.84.169 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 84 :FKKVYRLLE 1j93A 169 :FTKIKRLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18816 # 1jx4A.84.209 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1jx4A 210 :FDKLKGMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18817 # 1aa7A.84.108 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 84 :FKKVYRLLE 1aa7A 109 :FHGAKEISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18818 # 1vykA.84.129 read from T0287.t04.many.frag # found chain 1vykA in template set T0287 84 :FKKVYRLLE 1vykA 130 :AEKYYGQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18819 # 1ae9A.84.8 read from T0287.t04.many.frag # found chain 1ae9A in template set T0287 84 :FKKVYRLLE 1ae9A 185 :YLKIYQAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18820 # 2b6cA.84.124 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 84 :FKKVYRLLE 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18821 # 1m2oA.85.545 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 85 :KKVYRLLES 1m2oA 546 :ADVIRWLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18822 # 1hw1A.85.208 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 85 :KKVYRLLES 1hw1A 209 :YETVRRYGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18823 # 1h6gA.85.162 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 85 :KKVYRLLES 1h6gA 539 :DRTAGAIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18824 # 1k8kG.85.91 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 85 :KKVYRLLES 1k8kG 92 :EKAVQSLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18825 # 1sz9A.85.90 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 85 :KKVYRLLES 1sz9A 91 :KRTYLLVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18826 # 2audA.85.72 read from T0287.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 2audA 74 :EARYKLF T0287 93 :S 2audA 82 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=18828 # 1pb7A.85.191 read from T0287.t04.many.frag # found chain 1pb7A in training set T0287 85 :KKVYRLLES 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18829 # 2f6kA.85.137 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 85 :KKVYRLLES 2f6kA 138 :ERVYQELDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18830 # 1bf5A.85.50 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 85 :KKVYRLLES 1bf5A 200 :KKMYLMLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18831 # 1qmgA.85.298 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 85 :KKVYRLLES 1qmgA 370 :LALYNSLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18832 # 1e9rA.85.169 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 85 :KKVYRLLES 1e9rA 240 :RELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18833 # 1jx4A.85.210 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1jx4A 211 :DKLKGMI T0287 93 :S 1jx4A 219 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=18835 # 1rwhA.85.33 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 85 :KKVYRLLES 1rwhA 34 :AKAITALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18836 # 2fkcA.85.146 read from T0287.t04.many.frag # found chain 2fkcA in template set T0287 85 :KKVYRLLES 2fkcA 147 :NIVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18837 # 2bz1A.85.101 read from T0287.t04.many.frag # found chain 2bz1A in template set T0287 85 :KKVYRLLES 2bz1A 102 :IRAYALQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18838 # 1zhxA.85.336 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 85 :KKVYRLLES 1zhxA 333 :AKTKTELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18839 # 2ccyA.85.82 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 85 :KKVYR 2ccyA 83 :LEGWK T0287 92 :ES 2ccyA 90 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18841 # 1vraB.85.64 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 85 :KKVYRLLES 1vraB 261 :ANFYKALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18842 # 1zybA.85.137 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 85 :KKVYRLLES 1zybA 126 :RLNYMNIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18843 # 1zj8A.85.154 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 85 :KKVYRLLES 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18844 # 1k55A.85.100 read from T0287.t04.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1k55A 121 :QQIAREV T0287 93 :S 1k55A 129 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=18846 # 1usyA.85.147 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 85 :KKVYRLLES 1usyA 148 :EKVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18847 # 1owlA.85.273 read from T0287.t04.many.frag # found chain 1owlA in training set T0287 85 :KKVYRLLES 1owlA 274 :RNSIRVWQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18848 # 1w2xA.85.693 read from T0287.t04.many.frag # found chain 1w2xA in template set T0287 85 :KKVYRLLES 1w2xA 2169 :RQVATWIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18849 # 2erbA.85.73 read from T0287.t04.many.frag # found chain 2erbA in template set T0287 85 :KKVYRLLES 2erbA 74 :EKLHDSLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18850 # 1jt6A.85.112 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 85 :KKVYRLLES 1jt6A 113 :NEKMNKLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18851 # 1j93A.85.170 read from T0287.t04.many.frag # found chain 1j93A in template set T0287 85 :KKVYRLLES 1j93A 170 :TKIKRLAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18852 # 2b6cA.85.125 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 85 :KKVYRLLES 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18853 # 1x6iA.85.43 read from T0287.t04.many.frag # found chain 1x6iA in training set T0287 85 :KKVYRLLES 1x6iA 41 :RIFIRLLEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18854 # 1aa7A.85.109 read from T0287.t04.many.frag # found chain 1aa7A in template set T0287 85 :KKVYRLLES 1aa7A 110 :HGAKEISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18855 # 1m2oA.86.546 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 86 :KVYRLLESE 1m2oA 547 :DVIRWLDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18856 # 1hw1A.86.209 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 86 :KVYRLLESE 1hw1A 210 :ETVRRYGHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18857 # 1h6gA.86.163 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 86 :KVYRLLESE 1h6gA 540 :RTAGAIRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18858 # 1k8kG.86.92 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 86 :KVYRLLESE 1k8kG 93 :KAVQSLDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18859 # 1jx4A.86.211 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1jx4A 212 :KLKGMI T0287 93 :SE 1jx4A 219 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18861 # 1qmgA.86.299 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 86 :KVYRLLESE 1qmgA 371 :ALYNSLSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18862 # 2fkcA.86.147 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 T0287 86 :KVYRLLES 2fkcA 148 :IVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18863 # 1sz9A.86.91 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1sz9A 92 :RTYLLV T0287 93 :SE 1sz9A 99 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18865 # 1bf5A.86.51 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 86 :KVYRLLESE 1bf5A 201 :KMYLMLDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18866 # 1e9rA.86.170 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 86 :KVYRLLESE 1e9rA 241 :ELFHWTTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18867 # 1rwhA.86.34 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 86 :KVYRLLESE 1rwhA 35 :KAITALNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18868 # 1pb7A.86.192 read from T0287.t04.many.frag # found chain 1pb7A in training set Warning: unaligning (T0287)S93 (1pb7A)K200 because G (3-10) conformation "forbidden" or filtered. T0287 86 :KVYRLLE 1pb7A 193 :TMYRHME T0287 94 :E 1pb7A 201 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=18870 # 2audA.86.73 read from T0287.t04.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLL 2audA 75 :ARYKLF T0287 93 :SE 2audA 82 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18872 # 1vls.86.101 read from T0287.t04.many.frag # found chain 1vls in template set T0287 86 :KVYRLLESE 1vls 136 :ELIQFLDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18873 # 2ccyA.86.83 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 86 :KVYR 2ccyA 84 :EGWK T0287 92 :ESE 2ccyA 90 :ATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18875 # 1w96A.86.529 read from T0287.t04.many.frag # found chain 1w96A in training set T0287 86 :KVYRLLESE 1w96A 542 :YLIKLLETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18876 # 1k55A.86.101 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 86 :KVYRLLESE 1k55A 122 :QIAREVGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18877 # 1w2xA.86.694 read from T0287.t04.many.frag # found chain 1w2xA in template set T0287 86 :KVYRLLESE 1w2xA 2170 :QVATWIEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18878 # 2erbA.86.74 read from T0287.t04.many.frag # found chain 2erbA in template set Warning: unaligning (T0287)E92 (2erbA)P81 because P (beta_P) conformation "forbidden" or filtered. T0287 86 :KVYRLL 2erbA 75 :KLHDSL T0287 93 :SE 2erbA 82 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18880 # 2f6kA.86.138 read from T0287.t04.many.frag # found chain 2f6kA in template set T0287 86 :KVYRLLESE 2f6kA 139 :RVYQELDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18881 # 1zj8A.86.155 read from T0287.t04.many.frag # found chain 1zj8A in template set T0287 86 :KVYRLLESE 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18882 # 1z72A.86.85 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 86 :KVYRLLESE 1z72A 83 :KQLGFLEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18883 # 1jt6A.86.113 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 86 :KVYRLLESE 1jt6A 114 :EKMNKLENK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18884 # 1vraB.86.65 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 86 :KVYRLLESE 1vraB 262 :NFYKALQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18885 # 1zybA.86.138 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 86 :KVYRLLESE 1zybA 127 :LNYMNIVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18886 # 1k5nA.86.154 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 86 :KVYRLLESE 1k5nA 155 :QLRAYLEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18887 # 1sauA.86.88 read from T0287.t04.many.frag # found chain 1sauA in training set Warning: unaligning (T0287)S93 (1sauA)Q96 because G (3-10) conformation "forbidden" or filtered. T0287 86 :KVYRLLE 1sauA 89 :YIYKLFP T0287 94 :E 1sauA 97 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18889 # 1zhxA.86.337 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 86 :KVYRLLESE 1zhxA 334 :KTKTELEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=18890 # 1usyA.86.148 read from T0287.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1usyA 149 :KVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18891 # 1ib2A.86.160 read from T0287.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)S93 (1ib2A)G995 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLLE 1ib2A 988 :FIIDAFK T0287 94 :E 1ib2A 996 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=18893 # 1m2oA.87.547 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 87 :VYRLLESET 1m2oA 548 :VIRWLDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18894 # 1hw1A.87.210 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 87 :VYRLLESET 1hw1A 211 :TVRRYGHES Number of specific fragments extracted= 1 number of extra gaps= 0 total=18895 # 1jx4A.87.212 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRLL 1jx4A 213 :LKGMI T0287 93 :SET 1jx4A 219 :EAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18897 # 2fkcA.87.148 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 87 :VYRLLES 2fkcA 149 :VLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18898 # 1vls.87.102 read from T0287.t04.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1vls 137 :LIQFLDN T0287 95 :T 1vls 145 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=18900 # 1sz9A.87.92 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 87 :VYRLLESET 1sz9A 93 :TYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18901 # 1qmgA.87.300 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 87 :VYRLLESET 1qmgA 372 :LYNSLSEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18902 # 1h6gA.87.164 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 87 :VYRLLESET 1h6gA 541 :TAGAIRGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18903 # 1bf5A.87.52 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 87 :VYRLLESET 1bf5A 202 :MYLMLDNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18904 # 1e9rA.87.171 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 87 :VYRLLESET 1e9rA 242 :LFHWTTIAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18905 # 1k5nA.87.155 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 87 :VYRLLESET 1k5nA 156 :LRAYLEGEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18906 # 1z72A.87.86 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 87 :VYRLLESET 1z72A 84 :QLGFLEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18907 # 1k8kG.87.93 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 87 :VYRLLESET 1k8kG 94 :AVQSLDKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18908 # 1w96A.87.530 read from T0287.t04.many.frag # found chain 1w96A in training set Warning: unaligning (T0287)S93 (1w96A)T549 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLLE 1w96A 543 :LIKLLE T0287 94 :ET 1w96A 550 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=18910 # 1dk8A.87.82 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 87 :VYRLLESET 1dk8A 193 :VSRQTKPAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18911 # 1rwhA.87.35 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 87 :VYRLLESET 1rwhA 36 :AITALNNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18912 # 2ccyA.87.84 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 87 :VYR 2ccyA 85 :GWK T0287 92 :ESET 2ccyA 90 :ATES Number of specific fragments extracted= 2 number of extra gaps= 1 total=18914 # 1usyA.87.149 read from T0287.t04.many.frag # found chain 1usyA in template set T0287 87 :VYRLLESET 1usyA 150 :VLNLIDTKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18915 # 2audA.87.74 read from T0287.t04.many.frag # found chain 2audA in template set T0287 87 :VYRLLESET 2audA 76 :RYKLFNSPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18916 # 1jt6A.87.114 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 87 :VYRLLESET 1jt6A 115 :KMNKLENKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18917 # 1wwjA.87.64 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 87 :VYRLLESET 1wwjA 65 :LAKILPPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18918 # 1k55A.87.102 read from T0287.t04.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRLL 1k55A 123 :IAREV T0287 93 :SET 1k55A 129 :EVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18920 # 1x6iA.87.45 read from T0287.t04.many.frag # found chain 1x6iA in training set Warning: unaligning (T0287)S93 (1x6iA)C49 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLLE 1x6iA 43 :FIRLLE T0287 94 :ET 1x6iA 50 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18922 # 1w2xA.87.695 read from T0287.t04.many.frag # found chain 1w2xA in template set Warning: unaligning (T0287)S93 (1w2xA)E2177 because G (3-10) conformation "forbidden" or filtered. T0287 87 :VYRLLE 1w2xA 2171 :VATWIE T0287 94 :ET 1w2xA 2178 :NY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18924 # 2erbA.87.75 read from T0287.t04.many.frag # found chain 2erbA in template set Warning: unaligning (T0287)E92 (2erbA)P81 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLL 2erbA 76 :LHDSL T0287 93 :SET 2erbA 82 :SSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=18926 # 1q92A.87.48 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 87 :VY 1q92A 80 :QY T0287 91 :LESET 1q92A 84 :LRPGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18928 # 1zybA.87.139 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 87 :VYRLLESET 1zybA 128 :NYMNIVSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18929 # 1vraB.87.66 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 87 :VYRLLESET 1vraB 263 :FYKALQLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18930 # 1o82A.87.30 read from T0287.t04.many.frag # found chain 1o82A in training set T0287 87 :VYRLLESET 1o82A 31 :ILTAVGSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18931 # 1v9mA.87.71 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRL 1v9mA 72 :LPRL T0287 92 :E 1v9mA 77 :T T0287 94 :ET 1v9mA 79 :EA Number of specific fragments extracted= 3 number of extra gaps= 2 total=18934 # 1hw1A.88.211 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 88 :YRLLESETM 1hw1A 212 :VRRYGHESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18935 # 1m2oA.88.548 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 88 :YRLLESETM 1m2oA 549 :IRWLDRTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18936 # 1jx4A.88.213 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 88 :YRLLESETM 1jx4A 214 :KGMIGEAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18937 # 2fkcA.88.149 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 88 :YRLLES 2fkcA 150 :LNWLEK T0287 96 :M 2fkcA 158 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18939 # 1k5nA.88.156 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 88 :YRLLESETM 1k5nA 157 :RAYLEGECV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18940 # 1h6gA.88.165 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 88 :YRLLESETM 1h6gA 542 :AGAIRGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18941 # 1vls.88.103 read from T0287.t04.many.frag # found chain 1vls in template set T0287 88 :YRLLESETM 1vls 138 :IQFLDNGNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18942 # 1wwjA.88.65 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 88 :YRLLESETM 1wwjA 66 :AKILPPPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18943 # 1bf5A.88.53 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 88 :YRLLESETM 1bf5A 203 :YLMLDNKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18944 # 1sz9A.88.93 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 88 :YRLLESETM 1sz9A 94 :YLLVDNTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18945 # 1qmgA.88.301 read from T0287.t04.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1qmgA 373 :YNSL T0287 93 :SETM 1qmgA 378 :EEGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18947 # 1dk8A.88.83 read from T0287.t04.many.frag # found chain 1dk8A in training set Warning: unaligning (T0287)E92 (1dk8A)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1dk8A 194 :SRQT T0287 93 :SETM 1dk8A 199 :PATK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18949 # 1z72A.88.87 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 88 :YRLLESETM 1z72A 85 :LGFLEADED Number of specific fragments extracted= 1 number of extra gaps= 0 total=18950 # 2ccyA.88.85 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 88 :YR 2ccyA 86 :WK T0287 92 :ESETM 2ccyA 90 :ATEST Number of specific fragments extracted= 2 number of extra gaps= 1 total=18952 # 1usyA.88.150 read from T0287.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 88 :YRLLES 1usyA 151 :LNLIDT T0287 95 :TM 1usyA 158 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18954 # 1e9rA.88.172 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 88 :YRLLESETM 1e9rA 243 :FHWTTIATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18955 # 1rwhA.88.36 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 88 :YRLLESETM 1rwhA 37 :ITALNNKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18956 # 1jt6A.88.115 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 88 :YRLLESETM 1jt6A 116 :MNKLENKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18957 # 1zybA.88.140 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 88 :YRLLESETM 1zybA 129 :YMNIVSNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18958 # 1w96A.88.531 read from T0287.t04.many.frag # found chain 1w96A in training set T0287 88 :YRLLESETM 1w96A 544 :IKLLETEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18959 # 1v9mA.88.72 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRL 1v9mA 73 :PRL T0287 94 :ETM 1v9mA 79 :EAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18961 # 1q92A.88.49 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 88 :Y 1q92A 81 :Y T0287 91 :LES 1q92A 84 :LRP T0287 95 :TM 1q92A 88 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=18964 # 1vraB.88.67 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 88 :YRLLESETM 1vraB 264 :YKALQLACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18965 # 1w2xA.88.696 read from T0287.t04.many.frag # found chain 1w2xA in template set T0287 88 :YRLLESETM 1w2xA 2172 :ATWIEENYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18966 # 2erbA.88.76 read from T0287.t04.many.frag # found chain 2erbA in template set T0287 88 :YRLLESETM 2erbA 77 :HDSLPSSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18967 # 1k8kG.88.94 read from T0287.t04.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)E92 (1k8kG)D99 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1k8kG 95 :VQSL T0287 93 :SETM 1k8kG 100 :KNGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18969 # 1k55A.88.103 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 88 :YRLLESETM 1k55A 124 :AREVGEVRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18970 # 1m0kA.88.183 read from T0287.t04.many.frag # found chain 1m0kA in training set T0287 88 :YRLLESETM 1m0kA 171 :FKVLRNVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18971 # 1o82A.88.31 read from T0287.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1o82A 32 :LTAV T0287 93 :SETM 1o82A 37 :SGGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18973 # 1c9kA.88.107 read from T0287.t04.many.frag # found chain 1c9kA in template set T0287 88 :YRLLESETM 1c9kA 108 :ERAIDDEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18974 # 1hw1A.89.212 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 89 :RLLESETME 1hw1A 213 :RRYGHESGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18975 # 1m2oA.89.549 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 89 :RLLESETME 1m2oA 550 :RWLDRTLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18976 # 1jx4A.89.214 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1jx4A 215 :GMI T0287 93 :SETME 1jx4A 219 :EAKAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18978 # 1k5nA.89.157 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 89 :RLLESETME 1k5nA 158 :AYLEGECVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18979 # 2fkcA.89.150 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 89 :RLLES 2fkcA 151 :NWLEK T0287 96 :ME 2fkcA 158 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18981 # 1wwjA.89.66 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 89 :RLLESETME 1wwjA 67 :KILPPPVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18982 # 1dk8A.89.84 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 89 :RLLESETME 1dk8A 195 :RQTKPATKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18983 # 1sz9A.89.94 read from T0287.t04.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1sz9A 95 :LLV T0287 93 :SETME 1sz9A 99 :NTTRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18985 # 1h6gA.89.166 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 89 :RLLESETME 1h6gA 543 :GAIRGRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18986 # 1qmgA.89.302 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 89 :RLLESETME 1qmgA 374 :NSLSEEGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18987 # 1z72A.89.88 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 89 :RLLESETME 1z72A 86 :GFLEADEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18988 # 2ccyA.89.86 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 89 :R 2ccyA 87 :K T0287 92 :ESETME 2ccyA 90 :ATESTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18990 # 1bf5A.89.54 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 89 :RLLESETME 1bf5A 204 :LMLDNKRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18991 # 1jt6A.89.116 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 89 :RLLESETME 1jt6A 117 :NKLENKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18992 # 1v9mA.89.73 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RL 1v9mA 74 :RL T0287 92 :E 1v9mA 77 :T T0287 94 :ETME 1v9mA 79 :EARE Number of specific fragments extracted= 3 number of extra gaps= 2 total=18995 # 1vls.89.104 read from T0287.t04.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 89 :RLLES 1vls 139 :QFLDN T0287 95 :TME 1vls 145 :NMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18997 # 1zybA.89.141 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 89 :RLLESETME 1zybA 130 :MNIVSNRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18998 # 1q92A.89.50 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TME 1q92A 88 :LSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=19000 # 1usyA.89.151 read from T0287.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 89 :RLLES 1usyA 152 :NLIDT T0287 95 :TME 1usyA 158 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19002 # 1e9rA.89.173 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 89 :RLLESETME 1e9rA 244 :HWTTIATFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19003 # 1uruA.89.99 read from T0287.t04.many.frag # found chain 1uruA in template set T0287 89 :RLLESETME 1uruA 100 :GASESLWAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19004 # 1k55A.89.104 read from T0287.t04.many.frag # found chain 1k55A in training set T0287 89 :RLLESETME 1k55A 125 :REVGEVRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19005 # 1vraB.89.68 read from T0287.t04.many.frag # found chain 1vraB in template set T0287 89 :RLLESETME 1vraB 265 :KALQLACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=19006 # 1o82A.89.32 read from T0287.t04.many.frag # found chain 1o82A in training set T0287 89 :RLLESETME 1o82A 33 :TAVGSGGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19007 # 1qwnA.89.138 read from T0287.t04.many.frag # found chain 1qwnA in training set T0287 89 :RLLESETME 1qwnA 139 :HDLGENKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19008 # 1rwhA.89.37 read from T0287.t04.many.frag # found chain 1rwhA in training set T0287 89 :RLLESETME 1rwhA 38 :TALNNKAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19009 # 1zs3A.89.148 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 89 :RLLESETME 1zs3A 149 :VELYGYNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19010 # 1k8kG.89.95 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 89 :RLLESETME 1k8kG 96 :QSLDKNGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19011 # 1zhxA.89.340 read from T0287.t04.many.frag # found chain 1zhxA in template set T0287 89 :RLLESETME 1zhxA 337 :TELEETQRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19012 # 1qc7A.89.43 read from T0287.t04.many.frag # found chain 1qc7A in template set T0287 89 :RLLESETME 1qc7A 278 :KNMSKRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19013 # 1hw1A.90.213 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 90 :LLESETMEL 1hw1A 214 :RYGHESGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19014 # 1k5nA.90.158 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 90 :LLESETMEL 1k5nA 159 :YLEGECVEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19015 # 1jx4A.90.215 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1jx4A 216 :MI T0287 93 :SETMEL 1jx4A 219 :EAKAKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19017 # 1dk8A.90.85 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 90 :LLESETMEL 1dk8A 196 :QTKPATKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19018 # 1wwjA.90.67 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 90 :LLESETMEL 1wwjA 68 :ILPPPVRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19019 # 1m2oA.90.550 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 90 :LLESETMEL 1m2oA 551 :WLDRTLIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19020 # 2fkcA.90.151 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 90 :LLES 2fkcA 152 :WLEK T0287 96 :MEL 2fkcA 158 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19022 # 1sz9A.90.95 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 90 :LLESETMEL 1sz9A 96 :LVDNTTRTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19023 # 1h6gA.90.167 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 90 :LLESETMEL 1h6gA 544 :AIRGRAARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19024 # 2czrA.90.11 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 90 :LLESETMEL 2czrA 4 :ELSPGTKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19025 # 1q92A.90.51 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 91 :LESETMEL 1q92A 84 :LRPGLSEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19026 # 2ccyA.90.87 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMEL 2ccyA 90 :ATESTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19027 # 1z72A.90.89 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 90 :LLESETMEL 1z72A 87 :FLEADEDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19028 # 1g61A.90.74 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 90 :LLESETMEL 1g61A 2075 :IVEDEELDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19029 # 1bf5A.90.55 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 90 :LLESETMEL 1bf5A 205 :MLDNKRKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19030 # 1qmgA.90.303 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 90 :LLESETMEL 1qmgA 375 :SLSEEGKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19031 # 1v9mA.90.74 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 90 :L 1v9mA 75 :L T0287 93 :SETMEL 1v9mA 78 :GEAREA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19033 # 1zs3A.90.149 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 90 :LLESETMEL 1zs3A 150 :ELYGYNLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19034 # 1jt6A.90.117 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 90 :LLESETMEL 1jt6A 118 :KLENKYIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19035 # 1uruA.90.100 read from T0287.t04.many.frag # found chain 1uruA in template set T0287 90 :LLESETMEL 1uruA 101 :ASESLWADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19036 # 1kaeA.90.78 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 90 :LLESETMEL 1kaeA 79 :RLSDELKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19037 # 1zybA.90.142 read from T0287.t04.many.frag # found chain 1zybA in template set T0287 90 :LLESETMEL 1zybA 131 :NIVSNRAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19038 # 1e9rA.90.174 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 90 :LLESETMEL 1e9rA 245 :WTTIATFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19039 # 1k8kG.90.96 read from T0287.t04.many.frag # found chain 1k8kG in template set T0287 90 :LLESETMEL 1k8kG 97 :SLDKNGVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19040 # 1k55A.90.105 read from T0287.t04.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1k55A 126 :EV T0287 93 :SETMEL 1k55A 129 :EVRMQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19042 # 1lc5A.90.271 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 90 :LLESETMEL 1lc5A 272 :WLREEGARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19043 # 1o82A.90.33 read from T0287.t04.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1o82A 34 :AV T0287 93 :SETMEL 1o82A 37 :SGGLSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19045 # 1zz1A.90.74 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 90 :LLESETMEL 1zz1A 75 :AHSAAHLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19046 # 1q6uA.90.97 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 90 :LLESETMEL 1q6uA 98 :DNEAKGKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19047 # 1fi4A.90.355 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 90 :LLESETMEL 1fi4A 336 :KFTTEQLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19048 # 1hw1A.91.214 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 91 :LESETMELL 1hw1A 215 :YGHESGEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19049 # 1k5nA.91.159 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 91 :LESETMELL 1k5nA 160 :LEGECVEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19050 # 1jx4A.91.216 read from T0287.t04.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 91 :L 1jx4A 217 :I T0287 93 :SETMELL 1jx4A 219 :EAKAKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19052 # 1dk8A.91.86 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 91 :LESETMELL 1dk8A 197 :TKPATKSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19053 # 1wwjA.91.68 read from T0287.t04.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1wwjA 69 :L T0287 93 :SETMELL 1wwjA 71 :PPVRKII Number of specific fragments extracted= 2 number of extra gaps= 1 total=19055 # 1q92A.91.52 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 91 :LESETMELL 1q92A 84 :LRPGLSEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19056 # 2czrA.91.12 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E92 (2czrA)S6 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 2czrA 5 :L T0287 93 :SETMELL 2czrA 7 :PGTKKVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19058 # 2fkcA.91.152 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 91 :LES 2fkcA 153 :LEK T0287 96 :MELL 2fkcA 158 :VLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19060 # 1m2oA.91.551 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 91 :LESETMELL 1m2oA 552 :LDRTLIKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=19061 # 1sz9A.91.96 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 91 :LESETMELL 1sz9A 97 :VDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19062 # 1h6gA.91.168 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 91 :LESETMELL 1h6gA 545 :IRGRAARVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19063 # 2ccyA.91.88 read from T0287.t04.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMELL 2ccyA 90 :ATESTKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19064 # 1g61A.91.75 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2076 :VEDEELDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19065 # 1zz1A.91.75 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 91 :LESETMELL 1zz1A 76 :HSAAHLENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19066 # 1z72A.91.90 read from T0287.t04.many.frag # found chain 1z72A in template set T0287 91 :LESETMELL 1z72A 88 :LEADEDGYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19067 # 1fi4A.91.356 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 91 :LESETMELL 1fi4A 337 :FTTEQLEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19068 # 1lc5A.91.272 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 91 :LESETMELL 1lc5A 273 :LREEGARFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19069 # 1oohA.91.78 read from T0287.t04.many.frag # found chain 1oohA in training set T0287 91 :LESETMELL 1oohA 77 :VPPEMMEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19070 # 1zs3A.91.150 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 91 :LESETMELL 1zs3A 151 :LYGYNLQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19071 # 1v9mA.91.75 read from T0287.t04.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 91 :L 1v9mA 76 :V T0287 94 :ETMELL 1v9mA 79 :EAREAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19073 # 1jt6A.91.118 read from T0287.t04.many.frag # found chain 1jt6A in template set T0287 91 :LESETMELL 1jt6A 119 :LENKYIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19074 # 1kaeA.91.79 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 91 :LESETMELL 1kaeA 80 :LSDELKQAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19075 # 1l5aA.91.214 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 91 :LESETMELL 1l5aA 215 :LNSQLNHLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19076 # 1qmgA.91.304 read from T0287.t04.many.frag # found chain 1qmgA in training set T0287 91 :LESETMELL 1qmgA 376 :LSEEGKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19077 # 1uruA.91.101 read from T0287.t04.many.frag # found chain 1uruA in template set T0287 91 :LESETMELL 1uruA 102 :SESLWADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19078 # 1ekqA.91.145 read from T0287.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELL 1ekqA 148 :GDIIRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19079 # 1fobA.91.109 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 91 :LESETMELL 1fobA 110 :LYNYTLEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=19080 # 1bf5A.91.56 read from T0287.t04.many.frag # found chain 1bf5A in template set T0287 91 :LESETMELL 1bf5A 206 :LDNKRKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19081 # 1g61A.91.166 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2167 :VEDDELEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19082 # 1za0A.91.206 read from T0287.t04.many.frag # found chain 1za0A in template set Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)R208 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)R208 T0287 93 :SETMELL 1za0A 209 :DETIAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19083 # 1hw1A.92.215 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 92 :ESETMELLH 1hw1A 216 :GHESGEIWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19084 # 1k5nA.92.160 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 92 :ESETMELLH 1k5nA 161 :EGECVEWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19085 # 1jx4A.92.217 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 92 :ESETMELLH 1jx4A 218 :GEAKAKYLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19086 # 1q92A.92.53 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 92 :ES 1q92A 85 :RP T0287 95 :TMELLH 1q92A 88 :LSEKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19088 # 1wwjA.92.69 read from T0287.t04.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1wwjA 71 :PPVRKIIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19089 # 1dk8A.92.87 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 92 :ESETMELLH 1dk8A 198 :KPATKSFIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19090 # 2czrA.92.13 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 92 :ESETMELLH 2czrA 6 :SPGTKKVYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19091 # 2fkcA.92.153 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 92 :ES 2fkcA 154 :EK T0287 96 :MELLH 2fkcA 158 :VLVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19093 # 1zz1A.92.76 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 92 :ESETMELLH 1zz1A 77 :SAAHLENMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19094 # 1h6gA.92.169 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 92 :ESETMELLH 1h6gA 546 :RGRAARVIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19095 # 1m2oA.92.552 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 92 :ESETMELLH 1m2oA 553 :DRTLIKLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19096 # 2ccyA.92.89 read from T0287.t04.many.frag # found chain 2ccyA in training set T0287 92 :ESETMELLH 2ccyA 90 :ATESTKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19097 # 1fi4A.92.357 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 92 :ESETMELLH 1fi4A 338 :TTEQLEAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19098 # 1g61A.92.76 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 92 :ESETMELLH 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19099 # 1y1pA.92.107 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 92 :ESETMELLH 1y1pA 109 :IGGTLNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19100 # 1sz9A.92.97 read from T0287.t04.many.frag # found chain 1sz9A in template set T0287 92 :ESETMELLH 1sz9A 98 :DNTTRTKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19101 # 1zs3A.92.151 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 92 :ESETMELLH 1zs3A 152 :YGYNLQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19102 # 1lc5A.92.273 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 92 :ESETMELLH 1lc5A 274 :REEGARFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19103 # 1uhvA.92.31 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 92 :ESETMELLH 1uhvA 32 :QKEYIETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19104 # 1l5aA.92.215 read from T0287.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)E92 (1l5aA)N216 because P (beta_P) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1l5aA 217 :SQLNHLLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19105 # 1a4iA.92.77 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 92 :ESETMELLH 1a4iA 78 :ESEVMKYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19106 # 1fobA.92.110 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 92 :ESETMELLH 1fobA 111 :YNYTLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19107 # 1e9rA.92.176 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 92 :ESETMELLH 1e9rA 247 :TIATFDDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19108 # 1ekqA.92.146 read from T0287.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELLH 1ekqA 148 :GDIIRLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19109 # 1oohA.92.79 read from T0287.t04.many.frag # found chain 1oohA in training set T0287 92 :ESETMELLH 1oohA 78 :PPEMMEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19110 # 1q6uA.92.99 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 92 :ESETMELLH 1q6uA 100 :EAKGKEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19111 # 3nul.92.41 read from T0287.t04.many.frag # found chain 3nul in training set T0287 92 :ESETMELLH 3nul 43 :KPQEIDGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19112 # 1qtwA.92.44 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 92 :ESETMELLH 1qtwA 45 :TTQTIDEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19113 # 1jftA.92.27 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 92 :ESETMELLH 1jftA 29 :AEETRNAVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19114 # 1gsoA.92.305 read from T0287.t04.many.frag # found chain 1gsoA in training set T0287 92 :ESETMELLH 1gsoA 304 :KSDLVELCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19115 # 1hw1A.93.216 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 93 :SETMELLHA 1hw1A 217 :HESGEIWHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19116 # 1k5nA.93.161 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 93 :SETMELLHA 1k5nA 162 :GECVEWLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19117 # 1jx4A.93.218 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 93 :SETMELLHA 1jx4A 219 :EAKAKYLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19118 # 1q92A.93.54 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 93 :SETMELLHA 1q92A 86 :PGLSEKAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19119 # 2fkcA.93.154 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 93 :S 2fkcA 155 :K T0287 96 :MELLHA 2fkcA 158 :VLVLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19121 # 2czrA.93.14 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 93 :SETMELLHA 2czrA 7 :PGTKKVYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19122 # 1y1pA.93.108 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 93 :SETMELLHA 1y1pA 110 :GGTLNALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19123 # 1e9rA.93.177 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 93 :SETMELLHA 1e9rA 248 :IATFDDLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19124 # 1fi4A.93.358 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 93 :SETMELLHA 1fi4A 339 :TEQLEAFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19125 # 1zz1A.93.77 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 93 :SETMELLHA 1zz1A 78 :AAHLENMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19126 # 1h6gA.93.170 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 93 :SETMELLHA 1h6gA 547 :GRAARVIHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19127 # 1wwjA.93.70 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 93 :SETMELLHA 1wwjA 71 :PPVRKIIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19128 # 1dk8A.93.88 read from T0287.t04.many.frag # found chain 1dk8A in training set T0287 93 :SETMELLHA 1dk8A 199 :PATKSFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19129 # 2ccyA.93.90 read from T0287.t04.many.frag # found chain 2ccyA in training set T0287 93 :SETMELLHA 2ccyA 91 :TESTKLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19130 # 1lc5A.93.274 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 93 :SETMELLHA 1lc5A 275 :EEGARFYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19131 # 1m2oA.93.553 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 93 :SETMELLHA 1m2oA 554 :RTLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19132 # 1zs3A.93.152 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 93 :SETMELLHA 1zs3A 153 :GYNLQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19133 # 1g61A.93.77 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 93 :SETMELLHA 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19134 # 1uhvA.93.32 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 93 :SETMELLHA 1uhvA 33 :KEYIETLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19135 # 1g8mA.93.126 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 93 :SETMELLHA 1g8mA 127 :IGGVALLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19136 # 1uq5A.93.204 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 93 :SETMELLHA 1uq5A 209 :NSWGRLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19137 # 1qtwA.93.45 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 93 :SETMELLHA 1qtwA 46 :TQTIDEFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19138 # 1a4iA.93.78 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 93 :SETMELLHA 1a4iA 79 :SEVMKYITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19139 # 1jftA.93.28 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 93 :SETMELLHA 1jftA 30 :EETRNAVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19140 # 1l5aA.93.216 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 93 :SETMELLHA 1l5aA 217 :SQLNHLLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19141 # 1fobA.93.111 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 93 :SETMELLHA 1fobA 112 :NYTLEVCNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19142 # 1q6uA.93.100 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 93 :SETMELLHA 1q6uA 101 :AKGKEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19143 # 1oohA.93.80 read from T0287.t04.many.frag # found chain 1oohA in training set T0287 93 :SETMELLHA 1oohA 79 :PEMMEMSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19144 # 1wgzA.93.189 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 93 :SETMELLHA 1wgzA 190 :EGLKGLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19145 # 1lycA.93.95 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 93 :SETMELLHA 1lycA 96 :TDTVEALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19146 # 1hw1A.94.217 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 94 :ETMELLHAI 1hw1A 218 :ESGEIWHRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19147 # 1k5nA.94.162 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 94 :ETMELLHAI 1k5nA 163 :ECVEWLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19148 # 1q92A.94.55 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 95 :TMELLHAI 1q92A 88 :LSEKAISI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19149 # 1y1pA.94.109 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 94 :ETMELLHAI 1y1pA 111 :GTLNALRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19150 # 1jx4A.94.219 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 94 :ETMELLHAI 1jx4A 220 :AKAKYLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19151 # 1zz1A.94.78 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 94 :ETMELLHAI 1zz1A 79 :AHLENMKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19152 # 2fkcA.94.155 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAI 2fkcA 158 :VLVLTDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19153 # 2czrA.94.15 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 94 :ETMELLHAI 2czrA 8 :GTKKVYTQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19154 # 1uhvA.94.33 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 94 :ETMELLHAI 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19155 # 1h6gA.94.171 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 94 :ETMELLHAI 1h6gA 548 :RAARVIHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19156 # 1fi4A.94.359 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 94 :ETMELLHAI 1fi4A 340 :EQLEAFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19157 # 1g8mA.94.127 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 94 :ETMELLHAI 1g8mA 128 :GGVALLRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19158 # 1e9rA.94.178 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 94 :ETMELLHAI 1e9rA 249 :ATFDDLRGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19159 # 1zs3A.94.153 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 94 :ETMELLHAI 1zs3A 154 :YNLQVIRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19160 # 1lc5A.94.275 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 94 :ETMELLHAI 1lc5A 276 :EGARFYQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19161 # 1wwjA.94.71 read from T0287.t04.many.frag # found chain 1wwjA in template set T0287 94 :ETMELLHAI 1wwjA 72 :PVRKIIGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19162 # 1qtwA.94.46 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 94 :ETMELLHAI 1qtwA 47 :QTIDEFKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19163 # 1uq5A.94.205 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 94 :ETMELLHAI 1uq5A 210 :SWGRLSTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19164 # 1lniA.94.13 read from T0287.t04.many.frag # found chain 1lniA in training set T0287 94 :ETMELLHAI 1lniA 14 :EATDTLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19165 # 1lycA.94.96 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 94 :ETMELLHAI 1lycA 97 :DTVEALRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19166 # 1fobA.94.112 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 94 :ETMELLHAI 1fobA 113 :YTLEVCNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19167 # 1q6uA.94.101 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 94 :ETMELLHAI 1q6uA 102 :KGKEYREKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19168 # 1g61A.94.78 read from T0287.t04.many.frag # found chain 1g61A in training set T0287 94 :ETMELLHAI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19169 # 1a4iA.94.79 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 94 :ETMELLHAI 1a4iA 80 :EVMKYITSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19170 # 1m2oA.94.554 read from T0287.t04.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)I102 (1m2oA)Y563 because G (3-10) conformation "forbidden" or filtered. T0287 94 :ETMELLHA 1m2oA 555 :TLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19171 # 1wgzA.94.190 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 94 :ETMELLHAI 1wgzA 191 :GLKGLLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19172 # 1jftA.94.29 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 94 :ETMELLHAI 1jftA 31 :ETRNAVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19173 # 1l5aA.94.217 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 94 :ETMELLHAI 1l5aA 218 :QLNHLLLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19174 # 1vpbA.94.139 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 94 :ETMELLHAI 1vpbA 128 :DKIEMAKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19175 # 2ccyA.94.91 read from T0287.t04.many.frag # found chain 2ccyA in training set T0287 94 :ETMELLHAI 2ccyA 92 :ESTKLAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19176 # 1hw1A.95.218 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 95 :TMELLHAIA 1hw1A 219 :SGEIWHRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19177 # 1k5nA.95.163 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 95 :TMELLHAIA 1k5nA 164 :CVEWLRRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19178 # 1y1pA.95.110 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 95 :TMELLHAIA 1y1pA 112 :TLNALRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19179 # 1q92A.95.56 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 95 :TMELLHAIA 1q92A 88 :LSEKAISIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19180 # 1g8mA.95.128 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 95 :TMELLHAIA 1g8mA 129 :GVALLRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19181 # 1uq5A.95.206 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 95 :TMELLHAIA 1uq5A 211 :WGRLSTAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19182 # 1h6gA.95.172 read from T0287.t04.many.frag # found chain 1h6gA in template set T0287 95 :TMELLHAIA 1h6gA 549 :AARVIHVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19183 # 1zs3A.95.154 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 95 :TMELLHAIA 1zs3A 155 :NLQVIRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19184 # 2fkcA.95.156 read from T0287.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAIA 2fkcA 158 :VLVLTDIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19185 # 1uhvA.95.34 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 95 :TMELLHAIA 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19186 # 1lc5A.95.276 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 95 :TMELLHAIA 1lc5A 277 :GARFYQALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=19187 # 1zz1A.95.79 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 95 :TMELLHAIA 1zz1A 80 :HLENMKRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19188 # 1fi4A.95.360 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 95 :TMELLHAIA 1fi4A 341 :QLEAFNHQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19189 # 2czrA.95.16 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 95 :TMELLHAIA 2czrA 9 :TKKVYTQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19190 # 1lniA.95.14 read from T0287.t04.many.frag # found chain 1lniA in training set T0287 95 :TMELLHAIA 1lniA 15 :ATDTLNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19191 # 1jx4A.95.220 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 95 :TMELLHAIA 1jx4A 221 :KAKYLISLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19192 # 1q6uA.95.102 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 95 :TMELLHAIA 1q6uA 103 :GKEYREKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19193 # 1qtwA.95.47 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 95 :TMELLHAIA 1qtwA 48 :TIDEFKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=19194 # 1q79A.95.397 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 95 :TMELLHAIA 1q79A 398 :IRILVGSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19195 # 1vpbA.95.140 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 95 :TMELLHAIA 1vpbA 129 :KIEMAKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19196 # 1wgzA.95.191 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 95 :TMELLHAIA 1wgzA 192 :LKGLLDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19197 # 1lycA.95.97 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 95 :TMELLHAIA 1lycA 98 :TVEALRAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19198 # 1fobA.95.113 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 95 :TMELLHAIA 1fobA 114 :TLEVCNTFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19199 # 1wa5C.95.311 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 95 :TMELLHAIA 1wa5C 312 :SLSFLTAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19200 # 1jftA.95.30 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 95 :TMELLHAIA 1jftA 32 :TRNAVWAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19201 # 1gxqA.95.35 read from T0287.t04.many.frag # found chain 1gxqA in template set Warning: unaligning (T0287)H100 (1gxqA)H164 because H (helix) conformation "forbidden" or filtered. T0287 95 :TMELL 1gxqA 159 :EFKLL T0287 101 :AIA 1gxqA 165 :FFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19203 # 1e9rA.95.179 read from T0287.t04.many.frag # found chain 1e9rA in template set T0287 95 :TMELLHAIA 1e9rA 250 :TFDDLRGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19204 # 3nul.95.44 read from T0287.t04.many.frag # found chain 3nul in training set T0287 95 :TMELLHAIA 3nul 46 :EIDGIKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19205 # 1m2oA.95.555 read from T0287.t04.many.frag # found chain 1m2oA in template set T0287 95 :TMELLHAIA 1m2oA 556 :LIKLCQKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19206 # 1a4iA.95.80 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 95 :TMELLHAIA 1a4iA 81 :VMKYITSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19207 # 1y1pA.96.111 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 96 :MELLHAIAE 1y1pA 113 :LNALRAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19208 # 1hw1A.96.219 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 96 :MELLHAIAE 1hw1A 220 :GEIWHRMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19209 # 1k5nA.96.164 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 96 :MELLHAIAE 1k5nA 165 :VEWLRRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19210 # 1q92A.96.57 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 96 :MELLHAIAE 1q92A 89 :SEKAISIWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19211 # 1g8mA.96.129 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 96 :MELLHAIAE 1g8mA 130 :VALLRAAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19212 # 1zz1A.96.80 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 96 :MELLHAIAE 1zz1A 81 :LENMKRVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19213 # 1uhvA.96.35 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 96 :MELLHAIAE 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19214 # 1zs3A.96.155 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 96 :MELLHAIAE 1zs3A 156 :LQVIRNLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19215 # 1uq5A.96.207 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 96 :MELLHAIAE 1uq5A 212 :GRLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19216 # 1lc5A.96.277 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 96 :MELLHAIAE 1lc5A 278 :ARFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19217 # 1fi4A.96.361 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 96 :MELLHAIAE 1fi4A 342 :LEAFNHQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19218 # 1q6uA.96.103 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 96 :MELLHAIAE 1q6uA 104 :KEYREKFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19219 # 1qtwA.96.48 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 96 :MELLHAIAE 1qtwA 49 :IDEFKAACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19220 # 1wa5C.96.312 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 96 :MELLHAIAE 1wa5C 313 :LSFLTAVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19221 # 2fkcA.96.157 read from T0287.t04.many.frag # found chain 2fkcA in template set T0287 96 :MELLHAIAE 2fkcA 158 :VLVLTDILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19222 # 3nul.96.45 read from T0287.t04.many.frag # found chain 3nul in training set T0287 96 :MELLHAIAE 3nul 47 :IDGIKKDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19223 # 1h6gA.96.173 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)H100 (1h6gA)H554 because H (helix) conformation "forbidden" or filtered. T0287 96 :MELL 1h6gA 550 :ARVI T0287 101 :AIAE 1h6gA 555 :VVTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19225 # 1lycA.96.98 read from T0287.t04.many.frag # found chain 1lycA in training set T0287 96 :MELLHAIAE 1lycA 99 :VEALRAVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19226 # 1q79A.96.398 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 96 :MELLHAIAE 1q79A 399 :RILVGSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19227 # 1jx4A.96.221 read from T0287.t04.many.frag # found chain 1jx4A in training set T0287 96 :MELLHAIAE 1jx4A 222 :AKYLISLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19228 # 1vpbA.96.141 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 96 :MELLHAIAE 1vpbA 130 :IEMAKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19229 # 1lniA.96.15 read from T0287.t04.many.frag # found chain 1lniA in training set T0287 96 :MELLHAIAE 1lniA 16 :TDTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19230 # 1jftA.96.31 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 96 :MELLHAIAE 1jftA 33 :RNAVWAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19231 # 1zl0A.96.68 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 96 :MELLHAIAE 1zl0A 67 :LEDLHNAFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19232 # 1gxqA.96.36 read from T0287.t04.many.frag # found chain 1gxqA in template set T0287 96 :MELLHAIAE 1gxqA 160 :FKLLHFFMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19233 # 2czrA.96.17 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 96 :MELLHAIAE 2czrA 10 :KKVYTQVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19234 # 1a4iA.96.81 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 96 :MELLHAIAE 1a4iA 82 :MKYITSLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19235 # 2bptA.96.681 read from T0287.t04.many.frag # found chain 2bptA in template set T0287 96 :MELLHAIAE 2bptA 682 :MNVLAQMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19236 # 1wgzA.96.192 read from T0287.t04.many.frag # found chain 1wgzA in template set T0287 96 :MELLHAIAE 1wgzA 193 :KGLLDRILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19237 # 1fobA.96.114 read from T0287.t04.many.frag # found chain 1fobA in training set T0287 96 :MELLHAIAE 1fobA 115 :LEVCNTFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19238 # 1y1pA.97.112 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 97 :ELLHAIAEN 1y1pA 114 :NALRAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19239 # 1q92A.97.58 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 97 :ELLHAIAEN 1q92A 90 :EKAISIWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=19240 # 1k5nA.97.165 read from T0287.t04.many.frag # found chain 1k5nA in training set T0287 97 :ELLHAIAEN 1k5nA 166 :EWLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19241 # 1hw1A.97.220 read from T0287.t04.many.frag # found chain 1hw1A in training set T0287 97 :ELLHAIAEN 1hw1A 221 :EIWHRMQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19242 # 1uhvA.97.36 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 97 :ELLHAIAEN 1uhvA 37 :ETLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19243 # 1lc5A.97.278 read from T0287.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N105 (1lc5A)L287 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1lc5A 279 :RFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=19244 # 1zz1A.97.81 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 97 :ELLHAIAEN 1zz1A 82 :ENMKRVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19245 # 1q79A.97.399 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 97 :ELLHAIAEN 1q79A 400 :ILVGSLEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19246 # 1g8mA.97.130 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 97 :ELLHAIAEN 1g8mA 131 :ALLRAAAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19247 # 1uq5A.97.208 read from T0287.t04.many.frag # found chain 1uq5A in training set Warning: unaligning (T0287)N105 (1uq5A)S221 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1uq5A 213 :RLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19248 # 1zs3A.97.156 read from T0287.t04.many.frag # found chain 1zs3A in template set T0287 97 :ELLHAIAEN 1zs3A 157 :QVIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19249 # 2czrA.97.18 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 97 :ELLHAIAEN 2czrA 11 :KVYTQVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19250 # 1wa5C.97.313 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 97 :ELLHAIAEN 1wa5C 314 :SFLTAVTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19251 # 1q6uA.97.104 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 97 :ELLHAIAEN 1q6uA 105 :EYREKFAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19252 # 1n5uA.97.258 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 97 :ELLHAIAEN 1n5uA 259 :DLAKYICEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19253 # 1lniA.97.16 read from T0287.t04.many.frag # found chain 1lniA in training set T0287 97 :ELLHAIAEN 1lniA 17 :DTLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19254 # 3nul.97.46 read from T0287.t04.many.frag # found chain 3nul in training set T0287 97 :ELLHAIAEN 3nul 48 :DGIKKDFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19255 # 1zl0A.97.69 read from T0287.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)A103 (1zl0A)F74 because G (3-10) conformation "forbidden" or filtered. T0287 97 :ELLHAI 1zl0A 68 :EDLHNA T0287 104 :EN 1zl0A 75 :DM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19257 # 1h6gA.97.174 read from T0287.t04.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)H100 (1h6gA)H554 because H (helix) conformation "forbidden" or filtered. T0287 97 :ELL 1h6gA 551 :RVI T0287 101 :AIAEN 1h6gA 555 :VVTSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19259 # 1fi4A.97.362 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 97 :ELLHAIAEN 1fi4A 343 :EAFNHQFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=19260 # 1g5aA.97.80 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 97 :ELLHAIAEN 1g5aA 81 :DIDIARENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19261 # 1gxqA.97.37 read from T0287.t04.many.frag # found chain 1gxqA in template set T0287 97 :ELLHAIAEN 1gxqA 161 :KLLHFFMTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19262 # 1vpbA.97.142 read from T0287.t04.many.frag # found chain 1vpbA in training set T0287 97 :ELLHAIAEN 1vpbA 131 :EMAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19263 # 1qtwA.97.49 read from T0287.t04.many.frag # found chain 1qtwA in training set T0287 97 :ELLHAIAEN 1qtwA 50 :DEFKAACEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19264 # 1w79A.97.6 read from T0287.t04.many.frag # found chain 1w79A in template set T0287 97 :ELLHAIAEN 1w79A 7 :EDIDAILED Number of specific fragments extracted= 1 number of extra gaps= 0 total=19265 # 1a4iA.97.82 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 97 :ELLHAIAEN 1a4iA 83 :KYITSLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=19266 # 1t1vA.97.47 read from T0287.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 97 :ELLHAIA 1t1vA 48 :DEMRTLA T0287 105 :N 1t1vA 56 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=19268 # 1kpsB.97.140 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 97 :ELLHAIAEN 1kpsB 559 :PLLLAFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19269 # 1jftA.97.32 read from T0287.t04.many.frag # found chain 1jftA in template set T0287 97 :ELLHAIAEN 1jftA 34 :NAVWAAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19270 # 1colA.97.60 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 97 :ELL 1colA 61 :ASL T0287 102 :IAEN 1colA 66 :ITAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19272 # 1y1pA.98.113 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 98 :LLHAIAENP 1y1pA 115 :ALRAAAATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19273 # 1q92A.98.59 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 98 :LLHAIAENP 1q92A 91 :KAISIWESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19274 # 1n5uA.98.259 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 98 :LLHAIAENP 1n5uA 260 :LAKYICENQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19275 # 1k5nA.98.166 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1k5nA 167 :WLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19276 # 1uhvA.98.37 read from T0287.t04.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1uhvA 38 :TLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19277 # 1zz1A.98.82 read from T0287.t04.many.frag # found chain 1zz1A in template set T0287 98 :LLHAIAENP 1zz1A 83 :NMKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19278 # 3nul.98.47 read from T0287.t04.many.frag # found chain 3nul in training set T0287 98 :LLHAIAENP 3nul 49 :GIKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19279 # 1g5aA.98.81 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1g5aA 82 :IDIAREN T0287 106 :P 1g5aA 90 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19281 # 1lc5A.98.279 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 98 :LLHAIAENP 1lc5A 280 :FYQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19282 # 1t1vA.98.48 read from T0287.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 98 :LLHAIA 1t1vA 49 :EMRTLA T0287 105 :NP 1t1vA 56 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19284 # 1kpsB.98.141 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 98 :LLHAIAENP 1kpsB 560 :LLLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19285 # 1colA.98.61 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 98 :LL 1colA 62 :SL T0287 102 :IAENP 1colA 66 :ITANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19287 # 1q79A.98.400 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 98 :LLHAIAENP 1q79A 401 :LVGSLEKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19288 # 1g8mA.98.131 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 98 :LLHAIAENP 1g8mA 132 :LLRAAAKNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19289 # 1hw1A.98.221 read from T0287.t04.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because last residue in template chain is (1hw1A)L230 T0287 98 :LL 1hw1A 222 :IW T0287 101 :AIAEN 1hw1A 225 :RMQKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19291 # 1a4iA.98.83 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 98 :LLHAIAENP 1a4iA 84 :YITSLNEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19292 # 1wa5C.98.314 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 98 :LLHAIAENP 1wa5C 315 :FLTAVTRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19293 # 1f74A.98.149 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 98 :LLHAIAENP 1f74A 150 :QFGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19294 # 1q6uA.98.105 read from T0287.t04.many.frag # found chain 1q6uA in template set T0287 98 :LLHAIAENP 1q6uA 106 :YREKFAKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19295 # 1zs3A.98.157 read from T0287.t04.many.frag # found chain 1zs3A in template set Warning: unaligning (T0287)P106 (1zs3A)L166 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1zs3A 158 :VIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19296 # 1lniA.98.17 read from T0287.t04.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 T0287 98 :LLHAIAEN 1lniA 18 :TLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19297 # 1uq5A.98.209 read from T0287.t04.many.frag # found chain 1uq5A in training set T0287 98 :LLHAIAENP 1uq5A 214 :LSTAIQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19298 # 1zl0A.98.70 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 98 :LLHAIAENP 1zl0A 69 :DLHNAFDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19299 # 1fi4A.98.363 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 98 :LLHAIAENP 1fi4A 344 :AFNHQFESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19300 # 1w79A.98.7 read from T0287.t04.many.frag # found chain 1w79A in template set T0287 98 :LLHAIAENP 1w79A 8 :DIDAILEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19301 # 2czrA.98.19 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 98 :LLHAIAENP 2czrA 12 :VYTQVRYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19302 # 1h80A.98.44 read from T0287.t04.many.frag # found chain 1h80A in training set T0287 98 :LLHAIAENP 1h80A 72 :AINAISRKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19303 # 1gxqA.98.38 read from T0287.t04.many.frag # found chain 1gxqA in template set T0287 98 :LLHAIAENP 1gxqA 162 :LLHFFMTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19304 # 1no7A.98.162 read from T0287.t04.many.frag # found chain 1no7A in template set T0287 98 :LLHAIAENP 1no7A 613 :AVRGAFDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19305 # 1vpbA.98.143 read from T0287.t04.many.frag # found chain 1vpbA in training set Warning: unaligning (T0287)P106 (1vpbA)A140 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1vpbA 132 :MAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19306 # 1q92A.99.60 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N105 (1q92A)S98 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1q92A 92 :AISIWE T0287 106 :PN 1q92A 99 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19308 # 1y1pA.99.114 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 99 :LHAIAENPN 1y1pA 116 :LRAAAATPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19309 # 1n5uA.99.260 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 99 :LHAIAENPN 1n5uA 261 :AKYICENQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19310 # 1g5aA.99.82 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 99 :LHAIAENPN 1g5aA 83 :DIARENNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19311 # 3nul.99.48 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 3nul 50 :IKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19312 # 1colA.99.62 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :L 1colA 63 :L T0287 102 :IAE 1colA 66 :ITA T0287 106 :PN 1colA 70 :PA Number of specific fragments extracted= 3 number of extra gaps= 2 total=19315 # 1f74A.99.150 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 99 :LHAIAENPN 1f74A 151 :FGELYKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19316 # 1lc5A.99.280 read from T0287.t04.many.frag # found chain 1lc5A in training set T0287 99 :LHAIAENPN 1lc5A 281 :YQALCQLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19317 # 1zz1A.99.83 read from T0287.t04.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 T0287 99 :LHAIAENP 1zz1A 84 :MKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19318 # 1t1vA.99.49 read from T0287.t04.many.frag # found chain 1t1vA in training set T0287 99 :LHAIAENPN 1t1vA 50 :MRTLAGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19319 # 1kpsB.99.142 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 99 :LHAIAENPN 1kpsB 561 :LLAFVTKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19320 # 1uhvA.99.38 read from T0287.t04.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1uhvA 39 :LKYVKEN T0287 107 :N 1uhvA 47 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=19322 # 1k5nA.99.167 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1k5nA 168 :LRRYLEN T0287 107 :N 1k5nA 176 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=19324 # 1h80A.99.45 read from T0287.t04.many.frag # found chain 1h80A in training set T0287 99 :LHAIAENPN 1h80A 73 :INAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19325 # 1a4iA.99.84 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 99 :LHAIAENPN 1a4iA 85 :ITSLNEDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=19326 # 1q79A.99.401 read from T0287.t04.many.frag # found chain 1q79A in template set T0287 99 :LHAIAENPN 1q79A 402 :VGSLEKNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19327 # 1g8mA.99.132 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 99 :LHAIAENPN 1g8mA 133 :LRAAAKNHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19328 # 1q6uA.99.106 read from T0287.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1q6uA 107 :REKFAK T0287 106 :PN 1q6uA 114 :KG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19330 # 1gvjA.99.79 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1gvjA)K383 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIA 1gvjA 375 :WGKRK T0287 105 :NP 1gvjA 381 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=19332 # 2ffsA.99.28 read from T0287.t04.many.frag # found chain 2ffsA in template set T0287 99 :LHAIAENPN 2ffsA 29 :LVCRAREPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19333 # 1fi4A.99.364 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N105 (1fi4A)S351 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1fi4A 345 :FNHQFE T0287 106 :P 1fi4A 352 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=19335 # 1wa5C.99.315 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 99 :LHAIAENPN 1wa5C 316 :LTAVTRIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19336 # 1zl0A.99.71 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 99 :LHAIAENPN 1zl0A 70 :LHNAFDMPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19337 # 1rloA.99.92 read from T0287.t04.many.frag # found chain 1rloA in template set T0287 99 :LHAIAENPN 1rloA 93 :IGELLKDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19338 # 1z5zA.99.155 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 99 :LHAIAENPN 1z5zA 791 :ISKFQNNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19339 # 1ye8A.99.121 read from T0287.t04.many.frag # found chain 1ye8A in training set T0287 99 :LHAIAENPN 1ye8A 122 :VRQIMHDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19340 # 1vjhA.99.20 read from T0287.t04.many.frag # found chain 1vjhA in template set T0287 99 :LHAIAENPN 1vjhA 21 :FSAFVEDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19341 # 1uq5A.99.210 read from T0287.t04.many.frag # found chain 1uq5A in training set Warning: unaligning (T0287)N107 (1uq5A)Q223 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1uq5A 215 :STAIQESN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19342 # 1lniA.99.18 read from T0287.t04.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)N105 (1lniA)D25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1lniA)P27 T0287 99 :LHAIAE 1lniA 19 :LNLIAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19343 # 1w79A.99.8 read from T0287.t04.many.frag # found chain 1w79A in template set T0287 99 :LHAIAENPN 1w79A 9 :IDAILEDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19344 # 3nul.100.49 read from T0287.t04.many.frag # found chain 3nul in training set T0287 100 :HAIAENPNF 3nul 51 :KKDFEEPGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19345 # 1n5uA.100.261 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 100 :HAIAENPNF 1n5uA 262 :KYICENQDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19346 # 1g5aA.100.83 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 100 :HAIAENPNF 1g5aA 84 :IARENNPDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19347 # 1y1pA.100.115 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 100 :HAIAENPNF 1y1pA 117 :RAAAATPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19348 # 1q92A.100.61 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 100 :HAIAENPNF 1q92A 93 :ISIWESKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19349 # 2ffsA.100.29 read from T0287.t04.many.frag # found chain 2ffsA in template set T0287 100 :HAIAENPNF 2ffsA 30 :VCRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19350 # 1gvjA.100.80 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIA 1gvjA 376 :GKRK T0287 105 :NPNF 1gvjA 381 :KPKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19352 # 1f74A.100.151 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 100 :HAIAENPNF 1f74A 152 :GELYKNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19353 # 1colA.100.63 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 102 :IAENPNF 1colA 66 :ITANPAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=19354 # 1kpsB.100.143 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 100 :HAIAENPNF 1kpsB 562 :LAFVTKPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19355 # 1yw4A.100.236 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 100 :HAIAENPNF 1yw4A 237 :RGLLSNPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19356 # 1zz1A.100.84 read from T0287.t04.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N105 (1zz1A)L90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 T0287 100 :HAIAE 1zz1A 85 :KRVSN T0287 106 :P 1zz1A 91 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=19358 # 1k5nA.100.168 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1k5nA 169 :RRYLEN T0287 107 :NF 1k5nA 176 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19360 # 1z5zA.100.156 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 100 :HAIAENPNF 1z5zA 792 :SKFQNNPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19361 # 1g8mA.100.133 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 100 :HAIAENPNF 1g8mA 134 :RAAAKNHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19362 # 1fi4A.100.365 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1fi4A 346 :NHQFESS T0287 108 :F 1fi4A 354 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=19364 # 1t1vA.100.50 read from T0287.t04.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)N105 (1t1vA)N56 because D (zeta) conformation "forbidden" or filtered. T0287 100 :HAIAE 1t1vA 51 :RTLAG T0287 106 :PNF 1t1vA 57 :PKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19366 # 1h80A.100.46 read from T0287.t04.many.frag # found chain 1h80A in training set T0287 100 :HAIAENPNF 1h80A 74 :NAISRKPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19367 # 2bptA.100.685 read from T0287.t04.many.frag # found chain 2bptA in template set T0287 100 :HAIAENPNF 2bptA 686 :AQMISNPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19368 # 1lc5A.100.281 read from T0287.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N107 (1lc5A)L289 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1lc5A 282 :QALCQLP T0287 108 :F 1lc5A 290 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19370 # 1a4iA.100.85 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 100 :HAIAENPNF 1a4iA 86 :TSLNEDSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19371 # 1q6uA.100.107 read from T0287.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N107 (1q6uA)G115 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1q6uA 108 :EKFAKEK T0287 108 :F 1q6uA 116 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19373 # 1l0bA.100.23 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1l0bA 1612 :QKFAEK T0287 107 :NF 1l0bA 1619 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19375 # 1zl0A.100.72 read from T0287.t04.many.frag # found chain 1zl0A in template set T0287 100 :HAIAENPNF 1zl0A 71 :HNAFDMPDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19376 # 1vjhA.100.21 read from T0287.t04.many.frag # found chain 1vjhA in template set T0287 100 :HAIAENPNF 1vjhA 22 :SAFVEDTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19377 # 1z7xW.100.418 read from T0287.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1z7xW 418 :VESVR T0287 106 :PNF 1z7xW 424 :PGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=19379 # 1ye8A.100.122 read from T0287.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1ye8A 123 :RQIMH T0287 106 :PNF 1ye8A 129 :PNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19381 # 1l9vA.100.114 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 100 :HAIAENPNF 1l9vA 115 :VIRKENPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19382 # 1lu4A.100.47 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 100 :HAIAENPNF 1lu4A 1048 :QVAAANPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19383 # 1sra.100.44 read from T0287.t04.many.frag # found chain 1sra in template set T0287 100 :HAIAENPNF 1sra 180 :KKIHENEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19384 # 3nul.101.50 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAENP 3nul 52 :KDFEEP T0287 108 :FL 3nul 59 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19386 # 1g5aA.101.84 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. T0287 101 :AIAE 1g5aA 85 :AREN T0287 106 :PNFL 1g5aA 90 :PDWI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19388 # 1n5uA.101.262 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 101 :AIAENPNFL 1n5uA 263 :YICENQDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19389 # 2ffsA.101.30 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 T0287 101 :AIAENPNF 2ffsA 31 :CRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19390 # 1gvjA.101.81 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)A103 (1gvjA)K379 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AI 1gvjA 377 :KR T0287 104 :ENPNFL 1gvjA 380 :NKPKMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19392 # 1q92A.101.62 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N105 (1q92A)S98 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1q92A 94 :SIWE T0287 106 :PNFL 1q92A 99 :KNFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19394 # 1yw4A.101.237 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N105 (1yw4A)N242 because D (zeta) conformation "forbidden" or filtered. T0287 101 :AIAE 1yw4A 238 :GLLS T0287 106 :PNFL 1yw4A 243 :PQAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19396 # 1fi4A.101.366 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 101 :AIAENPNFL 1fi4A 347 :HQFESSNFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19397 # 1kpsB.101.144 read from T0287.t04.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAENP 1kpsB 563 :AFVTKP T0287 108 :FL 1kpsB 570 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19399 # 1colA.101.64 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1colA 66 :ITA T0287 106 :PNFL 1colA 70 :PAMK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19401 # 1f74A.101.152 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 101 :AIAENPNFL 1f74A 153 :ELYKNPKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19402 # 1y1pA.101.116 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 101 :AIAENPNFL 1y1pA 118 :AAAATPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19403 # 1w23A.101.313 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAEN 1w23A 314 :AKAKE T0287 108 :FL 1w23A 321 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19405 # 2bptA.101.686 read from T0287.t04.many.frag # found chain 2bptA in template set Warning: unaligning (T0287)N105 (2bptA)N691 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 2bptA 687 :QMIS T0287 106 :PNFL 2bptA 692 :PNAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19407 # 1k5nA.101.169 read from T0287.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1k5nA 170 :RYLEN T0287 107 :NFL 1k5nA 176 :KET Number of specific fragments extracted= 2 number of extra gaps= 1 total=19409 # 1lu4A.101.48 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 101 :AIAENPNFL 1lu4A 1049 :VAAANPAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19410 # 1g8mA.101.134 read from T0287.t04.many.frag # found chain 1g8mA in training set T0287 101 :AIAENPNFL 1g8mA 135 :AAAKNHARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19411 # 1z5zA.101.157 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 101 :AIAENPNFL 1z5zA 793 :KFQNNPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19412 # 1l0bA.101.24 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l0bA 1613 :KFAEK T0287 107 :NFL 1l0bA 1619 :RLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19414 # 1z7xW.101.419 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 101 :AIAENPNFL 1z7xW 419 :ESVRQPGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19415 # 1sra.101.45 read from T0287.t04.many.frag # found chain 1sra in template set T0287 101 :AIAENPNFL 1sra 181 :KIHENEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19416 # 1l9vA.101.115 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 101 :AIAENPNFL 1l9vA 116 :IRKENPQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19417 # 1vjhA.101.22 read from T0287.t04.many.frag # found chain 1vjhA in template set T0287 101 :AIAENPNFL 1vjhA 23 :AFVEDTNRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19418 # 1h80A.101.47 read from T0287.t04.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)N107 (1h80A)N81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENP 1h80A 75 :AISRKP T0287 108 :F 1h80A 82 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=19420 # 1l8aA.101.418 read from T0287.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l8aA)N425 because L (left) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l8aA 419 :HIRDR T0287 108 :FL 1l8aA 426 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19422 # 1zl0A.101.73 read from T0287.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)N107 (1zl0A)D78 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAENP 1zl0A 72 :NAFDMP T0287 108 :FL 1zl0A 79 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19424 # 1uehA.101.159 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAEN 1uehA 160 :EKVQQ T0287 107 :NFL 1uehA 166 :NLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19426 # 1ye8A.101.123 read from T0287.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAENP 1ye8A 124 :QIMHDP T0287 108 :FL 1ye8A 131 :VN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19428 # 1sbxA.101.54 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 101 :AIAEN 1sbxA 141 :AVCDE T0287 108 :FL 1sbxA 148 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19430 # 1zz1A.101.85 read from T0287.t04.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 Warning: unaligning (T0287)L109 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENP 1zz1A 86 :RVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19431 # 3nul.102.51 read from T0287.t04.many.frag # found chain 3nul in training set T0287 102 :IAENPNFLF 3nul 53 :DFEEPGFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19432 # 1g5aA.102.85 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 102 :IAENPNFLF 1g5aA 86 :RENNPDWIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19433 # 1n5uA.102.263 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 102 :IAENPNFLF 1n5uA 264 :ICENQDSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19434 # 1gvjA.102.82 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IA 1gvjA 378 :RK T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :F 1gvjA 386 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=19437 # 2ffsA.102.31 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 102 :IAENPNF 2ffsA 32 :RAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19438 # 1colA.102.65 read from T0287.t04.many.frag # found chain 1colA in template set T0287 102 :IAENPNFLF 1colA 66 :ITANPAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19439 # 1q92A.102.63 read from T0287.t04.many.frag # found chain 1q92A in training set T0287 102 :IAENPNFLF 1q92A 95 :IWESKNFFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19440 # 1yw4A.102.238 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 102 :IAENPNFLF 1yw4A 239 :LLSNPQANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19441 # 1w23A.102.314 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1w23A 315 :KAKE T0287 108 :FLF 1w23A 321 :FVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19443 # 1lu4A.102.49 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 102 :IAENPNFLF 1lu4A 1050 :AAANPAVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19444 # 1f74A.102.153 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 102 :IAENPNFLF 1f74A 154 :LYKNPKVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19445 # 1kpsB.102.145 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 102 :IAENPNFLF 1kpsB 564 :FVTKPNGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19446 # 1z5zA.102.158 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 102 :IAENPNFLF 1z5zA 794 :FQNNPSVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19447 # 1fi4A.102.367 read from T0287.t04.many.frag # found chain 1fi4A in template set T0287 102 :IAENPNFLF 1fi4A 348 :QFESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19448 # 2bptA.102.687 read from T0287.t04.many.frag # found chain 2bptA in template set T0287 102 :IAENPNFLF 2bptA 688 :MISNPNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19449 # 1y1pA.102.117 read from T0287.t04.many.frag # found chain 1y1pA in template set T0287 102 :IAENPNFLF 1y1pA 119 :AAATPSVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19450 # 1l9vA.102.116 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 102 :IAENPNFLF 1l9vA 117 :RKENPQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19451 # 1z7xW.102.420 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 102 :IAENPNFLF 1z7xW 420 :SVRQPGCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19452 # 1l0bA.102.25 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1l0bA 1614 :FAEK T0287 107 :NFLF 1l0bA 1619 :RLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19454 # 1zl0A.102.74 read from T0287.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1zl0A)A81 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IAE 1zl0A 73 :AFD T0287 106 :PNFL 1zl0A 77 :PDIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=19456 # 1sbxA.102.55 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1sbxA 142 :VCDE T0287 108 :FLF 1sbxA 148 :IYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=19458 # 1sra.102.46 read from T0287.t04.many.frag # found chain 1sra in template set T0287 102 :IAENPNFLF 1sra 182 :IHENEKRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19459 # 1yt8A.102.452 read from T0287.t04.many.frag # found chain 1yt8A in template set T0287 102 :IAENPNFLF 1yt8A 453 :LSGKPVFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19460 # 1h80A.102.48 read from T0287.t04.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IAENPN 1h80A 76 :ISRKPN T0287 110 :F 1h80A 84 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=19462 # 1musA.102.62 read from T0287.t04.many.frag # found chain 1musA in template set T0287 102 :IAENPNFLF 1musA 63 :FIRNPNVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19463 # 1ye8A.102.124 read from T0287.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 T0287 102 :IAE 1ye8A 125 :IMH T0287 106 :PNFL 1ye8A 129 :PNVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19465 # 1rp0A.102.57 read from T0287.t04.many.frag # found chain 1rp0A in training set T0287 102 :IAENPNFLF 1rp0A 58 :ISKNPNVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19466 # 1uehA.102.160 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1uehA 161 :KVQQ T0287 107 :NFLF 1uehA 166 :NLQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19468 # 1l8aA.102.419 read from T0287.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1l8aA 420 :IRDR T0287 107 :NFLF 1l8aA 425 :NVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19470 # 1a4iA.102.87 read from T0287.t04.many.frag # found chain 1a4iA in training set T0287 102 :IAENPNFLF 1a4iA 88 :LNEDSTVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19471 # 3nul.103.52 read from T0287.t04.many.frag # found chain 3nul in training set T0287 103 :AENPNFLFS 3nul 54 :FEEPGFLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19472 # 1g5aA.103.86 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 103 :AENPNFLFS 1g5aA 87 :ENNPDWILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19473 # 1gvjA.103.83 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :A 1gvjA 379 :K T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FS 1gvjA 386 :YE Number of specific fragments extracted= 3 number of extra gaps= 2 total=19476 # 1n5uA.103.264 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1n5uA)S272 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :AE 1n5uA 265 :CE T0287 106 :PNFL 1n5uA 268 :QDSI T0287 111 :S 1n5uA 273 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=19479 # 2ffsA.103.32 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 103 :AENPNF 2ffsA 33 :AREPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19481 # 1yw4A.103.239 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 103 :AENPNFLFS 1yw4A 240 :LSNPQANVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19482 # 1kpsB.103.146 read from T0287.t04.many.frag # found chain 1kpsB in template set T0287 103 :AENPNFLFS 1kpsB 565 :VTKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19483 # 1z5zA.103.159 read from T0287.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0287)N105 (1z5zA)N797 because D (zeta) conformation "forbidden" or filtered. T0287 103 :AE 1z5zA 795 :QN T0287 106 :PNFLFS 1z5zA 798 :PSVKFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19485 # 1lu4A.103.50 read from T0287.t04.many.frag # found chain 1lu4A in training set T0287 103 :AENPNFLFS 1lu4A 1051 :AANPAVTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19486 # 1colA.103.66 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F108 (1colA)M72 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENPN 1colA 67 :TANPA T0287 109 :LFS 1colA 73 :KIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19488 # 1q92A.103.64 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AENP 1q92A 96 :WESK T0287 108 :FLFS 1q92A 101 :FFFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19490 # 1f74A.103.154 read from T0287.t04.many.frag # found chain 1f74A in training set T0287 103 :AENPNFLFS 1f74A 155 :YKNPKVLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19491 # 1yt8A.103.453 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1yt8A)D462 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :A 1yt8A 454 :S T0287 105 :NPNFLF 1yt8A 456 :KPVFLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19493 # 1w23A.103.315 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 1w23A 316 :AKE T0287 108 :FL 1w23A 321 :FV T0287 111 :S 1w23A 324 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=19496 # 1l9vA.103.117 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 103 :AENPNFLFS 1l9vA 118 :KENPQDILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19497 # 1z7xW.103.421 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 103 :AENPNFLFS 1z7xW 421 :VRQPGCLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19498 # 2bptA.103.688 read from T0287.t04.many.frag # found chain 2bptA in template set T0287 103 :AENPNFLFS 2bptA 689 :ISNPNARRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19499 # 1fi4A.103.368 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1fi4A 349 :FESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19500 # 2jdxA.103.201 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (2jdxA)T247 because P (beta_P) conformation "forbidden" or filtered. T0287 103 :AEN 2jdxA 239 :AAQ T0287 107 :NFLF 2jdxA 243 :KFVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=19502 # 1sbxA.103.56 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1sbxA 143 :CDE T0287 107 :NFLFS 1sbxA 147 :HIYCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19504 # 1l0bA.103.26 read from T0287.t04.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1l0bA 1615 :AEK T0287 108 :FLFS 1l0bA 1620 :LALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19506 # 1eokA.103.18 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)A103 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1eokA 20 :RNPTFKLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19507 # 1ye8A.103.125 read from T0287.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1ye8A)V134 T0287 103 :AENPNFL 1ye8A 126 :MHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19508 # 1musA.103.63 read from T0287.t04.many.frag # found chain 1musA in template set T0287 103 :AENPNFLFS 1musA 64 :IRNPNVSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19509 # 1rlzA.103.213 read from T0287.t04.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1rlzA 214 :I T0287 105 :NPNFLFS 1rlzA 216 :NPESVYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19511 # 1oygA.103.31 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 103 :AENPNFLFS 1oygA 58 :QKNEKYQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19512 # 2f2gA.103.95 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 2f2gA 96 :GSK T0287 107 :NFLFS 2f2gA 100 :DVDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19514 # 1kcfA.103.198 read from T0287.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0287)P106 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1kcfA 199 :IDG T0287 107 :NFLFS 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19516 # 1rp0A.103.58 read from T0287.t04.many.frag # found chain 1rp0A in training set T0287 103 :AENPNFLFS 1rp0A 59 :SKNPNVQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19517 # 1x9iA.103.8 read from T0287.t04.many.frag # found chain 1x9iA in training set T0287 103 :AENPNFLFS 1x9iA 9 :LNWENYILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19518 # 1gvjA.104.84 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FSK 1gvjA 386 :YEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19520 # 3nul.104.53 read from T0287.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENP 3nul 55 :EEP T0287 108 :FLFSK 3nul 59 :FLAPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19522 # 1yw4A.104.240 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 104 :ENPNFLFSK 1yw4A 241 :SNPQANVPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19523 # 1n5uA.104.265 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 104 :ENPNFLFSK 1n5uA 266 :ENQDSISSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19524 # 1kpsB.104.147 read from T0287.t04.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)N107 (1kpsB)N569 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENP 1kpsB 566 :TKP T0287 108 :FLFS 1kpsB 570 :GALE Number of specific fragments extracted= 2 number of extra gaps= 2 total=19526 # 1g5aA.104.87 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 104 :ENPNFLFSK 1g5aA 88 :NNPDWILSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19527 # 2ffsA.104.33 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)S111 (2ffsA)V41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPNF 2ffsA 34 :REPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19528 # 1z5zA.104.160 read from T0287.t04.many.frag # found chain 1z5zA in template set T0287 104 :ENPNFLFSK 1z5zA 796 :NNPSVKFIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19529 # 1eokA.104.19 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N105 (1eokA)N21 because L (left) conformation "forbidden" or filtered. T0287 104 :E 1eokA 20 :R T0287 106 :PNFLFSK 1eokA 22 :PTFKLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19531 # 1x9iA.104.9 read from T0287.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)F108 (1x9iA)Y14 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPN 1x9iA 10 :NWEN T0287 109 :LFSK 1x9iA 15 :ILRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19533 # 1z7xW.104.422 read from T0287.t04.many.frag # found chain 1z7xW in template set T0287 104 :ENPNFLFSK 1z7xW 422 :RQPGCLLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19534 # 2jdxA.104.202 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 2jdxA 240 :AQ T0287 107 :NFLFSK 2jdxA 243 :KFVTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19536 # 1oygA.104.32 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 104 :ENPNFLFSK 1oygA 59 :KNEKYQVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19537 # 1q92A.104.65 read from T0287.t04.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENP 1q92A 97 :ESK T0287 108 :FLFSK 1q92A 101 :FFFEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19539 # 1yt8A.104.454 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. T0287 105 :NPNFLFSK 1yt8A 456 :KPVFLLDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19540 # 1sbxA.104.57 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1sbxA 144 :DE T0287 108 :FLFSK 1sbxA 148 :IYCSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19542 # 1lu4A.104.51 read from T0287.t04.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)K112 (1lu4A)G1060 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1lu4A 1052 :ANPAVTFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19543 # 1colA.104.67 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)S111 (1colA)N75 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :ENPNFLF 1colA 68 :ANPAMKI T0287 112 :K 1colA 76 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=19545 # 1ox0A.104.105 read from T0287.t04.many.frag # found chain 1ox0A in training set T0287 104 :ENPNFLFSK 1ox0A 87 :NHANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19546 # 1rlzA.104.214 read from T0287.t04.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 105 :NPNFLFSK 1rlzA 216 :NPESVYYW Number of specific fragments extracted= 1 number of extra gaps= 1 total=19547 # 1l9vA.104.118 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 104 :ENPNFLFSK 1l9vA 119 :ENPQDILFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19548 # 2f2gA.104.96 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 2f2gA 97 :SK T0287 107 :NFLFSK 2f2gA 100 :DVDFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=19550 # 1fi4A.104.369 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENP 1fi4A 350 :ESS T0287 108 :FLF 1fi4A 354 :FTA T0287 112 :K 1fi4A 358 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=19553 # 1tjvA.104.400 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1tjvA 401 :ET T0287 107 :NFLFSK 1tjvA 404 :GITINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19555 # 1qlmA.104.269 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1qlmA 270 :EE T0287 109 :LFSK 1qlmA 275 :DFYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19557 # 1w23A.104.279 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)N282 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 280 :ES T0287 107 :NFLFSK 1w23A 283 :GFYVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=19559 # 1w23A.104.316 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 317 :KE T0287 107 :NFL 1w23A 320 :GFV T0287 111 :S 1w23A 324 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=19562 # 1pea.104.301 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1pea 302 :AA T0287 107 :NFLFSK 1pea 305 :NWRVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=19564 # 1musA.104.64 read from T0287.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0287)N107 (1musA)N68 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENP 1musA 65 :RNP T0287 108 :FLFSK 1musA 69 :VSAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19566 # 1rz4A.104.55 read from T0287.t04.many.frag # found chain 1rz4A in template set T0287 104 :ENPNFLFSK 1rz4A 56 :FNPAFFQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19567 # 1yw4A.105.241 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 105 :NPNFLFSKF 1yw4A 242 :NPQANVPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19568 # 1gvjA.105.85 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FSKF 1gvjA 386 :YEKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19570 # 1oygA.105.33 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 105 :NPNFLFSKF 1oygA 60 :NEKYQVPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19571 # 1n5uA.105.266 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 105 :NPNFLFSKF 1n5uA 267 :NQDSISSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19572 # 1ox0A.105.106 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)N107 (1ox0A)N90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 T0287 105 :NP 1ox0A 88 :HA T0287 108 :FLFSK 1ox0A 91 :LDVEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19574 # 1sbxA.105.58 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1sbxA)R152 because E (beta_S) conformation "forbidden" or filtered. T0287 105 :N 1sbxA 145 :E T0287 107 :NFLFS 1sbxA 147 :HIYCS T0287 113 :F 1sbxA 153 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=19577 # 1eokA.105.20 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 105 :NPNFLFSKF 1eokA 21 :NPTFKLKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19578 # 1x9iA.105.10 read from T0287.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)N107 (1x9iA)N13 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NP 1x9iA 11 :WE T0287 108 :FLFS 1x9iA 14 :YILR T0287 113 :F 1x9iA 19 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=19581 # 2ffsA.105.34 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NPNF 2ffsA 35 :EPQY T0287 111 :S 2ffsA 41 :V T0287 113 :F 2ffsA 43 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=19584 # 1qlmA.105.270 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1qlmA 271 :E T0287 107 :N 1qlmA 273 :D T0287 109 :LFSKF 1qlmA 275 :DFYKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=19587 # 2jdxA.105.203 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 2jdxA 241 :Q T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19589 # 1tjvA.105.401 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1tjvA 402 :T T0287 107 :NFLFSKF 1tjvA 404 :GITINKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19591 # 2f2gA.105.97 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 105 :N 2f2gA 98 :K T0287 108 :FLFSKF 2f2gA 101 :VDFSTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19593 # 1w23A.105.317 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1w23A 318 :E T0287 108 :FLFSKF 1w23A 321 :FVGLNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19595 # 1pea.105.302 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1pea 303 :A T0287 107 :NFLFSKF 1pea 305 :NWRVEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19597 # 1g5aA.105.88 read from T0287.t04.many.frag # found chain 1g5aA in training set T0287 105 :NPNFLFSKF 1g5aA 89 :NPDWILSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19598 # 1fi4A.105.370 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N105 (1fi4A)S351 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :P 1fi4A 352 :S T0287 108 :FLF 1fi4A 354 :FTA T0287 112 :KF 1fi4A 358 :EL Number of specific fragments extracted= 3 number of extra gaps= 3 total=19601 # 1zvdA.105.240 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 105 :NPNFLFSKF 1zvdA 609 :IPQHLLKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19602 # 3nul.105.54 read from T0287.t04.many.frag # found chain 3nul in training set T0287 105 :NPNFLFSKF 3nul 56 :EPGFLAPTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19603 # 1kpsB.105.148 read from T0287.t04.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1kpsB 567 :KPNGALE T0287 113 :F 1kpsB 575 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=19605 # 1rz4A.105.56 read from T0287.t04.many.frag # found chain 1rz4A in template set T0287 105 :NPNFLFSKF 1rz4A 57 :NPAFFQTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19606 # 1yt8A.105.455 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)N105 (1yt8A)K456 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1yt8A 457 :PVFLLD T0287 113 :F 1yt8A 464 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=19608 # 1uehA.105.163 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1uehA 164 :Q T0287 107 :NFLFSKF 1uehA 166 :NLQPDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19610 # 2b59B.105.152 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NP 2b59B 153 :HF T0287 108 :FLFSKF 2b59B 156 :ATSSDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19612 # 1u8xX.105.455 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 T0287 105 :N 1u8xX 433 :A T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19615 # 1z7xW.105.423 read from T0287.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1z7xW 424 :PGCLLEQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19616 # 1colA.105.68 read from T0287.t04.many.frag # found chain 1colA in template set T0287 105 :NPNFLFSKF 1colA 69 :NPAMKINKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19617 # 1s4nA.105.203 read from T0287.t04.many.frag # found chain 1s4nA in template set T0287 105 :NPNFLFSKF 1s4nA 298 :NPEYLDENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19618 # 1wteA.105.97 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1wteA)F106 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NP 1wteA 98 :NE T0287 108 :FLFSK 1wteA 101 :FIHPC Number of specific fragments extracted= 2 number of extra gaps= 2 total=19620 # 1oqjA.105.76 read from T0287.t04.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1oqjA)Y168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1oqjA 162 :S T0287 107 :NFLF 1oqjA 164 :QIDF T0287 113 :F 1oqjA 170 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=19623 # 1ox0A.106.107 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 106 :PNFLFSK 1ox0A 89 :ANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19624 # 1oygA.106.34 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 106 :PNFLFSKFD 1oygA 61 :EKYQVPEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19625 # 1yw4A.106.242 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 106 :PNFLFSKFD 1yw4A 243 :PQANVPDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19626 # 1gvjA.106.86 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNF 1gvjA 382 :PKM T0287 110 :FSKFD 1gvjA 386 :YEKLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19628 # 1n5uA.106.267 read from T0287.t04.many.frag # found chain 1n5uA in template set T0287 106 :PNFLFSKFD 1n5uA 268 :QDSISSKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19629 # 1zvdA.106.241 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 106 :PNFLFSKFD 1zvdA 610 :PQHLLKTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19630 # 1eokA.106.21 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 106 :PNFLFSKFD 1eokA 22 :PTFKLKDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19631 # 1sbxA.106.59 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1sbxA 147 :HIYCSRCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=19632 # 1x9iA.106.11 read from T0287.t04.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)S111 (1x9iA)R17 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLF 1x9iA 12 :ENYIL T0287 113 :FD 1x9iA 19 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19634 # 1pea.106.303 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1pea 305 :NWRVEDVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=19635 # 2f2gA.106.98 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 2f2gA 100 :DVDFSTVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19636 # 1qlmA.106.271 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1qlmA)D273 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFD 1qlmA 275 :DFYKID Number of specific fragments extracted= 1 number of extra gaps= 1 total=19637 # 1tjvA.106.402 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1tjvA 404 :GITINKLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19638 # 2jdxA.106.204 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF Number of specific fragments extracted= 1 number of extra gaps= 2 total=19639 # 1odmA.106.167 read from T0287.t04.many.frag # found chain 1odmA in training set Warning: unaligning (T0287)N107 (1odmA)N169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1odmA)F175 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1odmA)K176 because E (beta_S) conformation "forbidden" or filtered. T0287 106 :P 1odmA 168 :E T0287 108 :FLFSK 1odmA 170 :FFARH Number of specific fragments extracted= 2 number of extra gaps= 2 total=19641 # 1uehA.106.164 read from T0287.t04.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1uehA)D173 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1uehA 166 :NLQPDQI Number of specific fragments extracted= 1 number of extra gaps= 2 total=19642 # 1t4bA.106.210 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)P106 (1t4bA)G211 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1t4bA 212 :ELPVDNFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19643 # 2ffsA.106.35 read from T0287.t04.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :PNF 2ffsA 36 :PQY T0287 111 :S 2ffsA 41 :V T0287 113 :FD 2ffsA 43 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=19646 # 1yt8A.106.456 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 106 :PNFLFS 1yt8A 457 :PVFLLD T0287 114 :D 1yt8A 465 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=19648 # 1pkhA.106.14 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)P106 (1pkhA)K15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FD 1pkhA 22 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19650 # 2b59B.106.153 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 106 :P 2b59B 154 :F T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19652 # 1fi4A.106.371 read from T0287.t04.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLF 1fi4A 352 :SNFTA T0287 112 :KFD 1fi4A 358 :ELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19654 # 1u8xX.106.456 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 3 total=19656 # 1w23A.106.318 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1w23A 321 :FVGLNGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=19657 # 1u8xX.106.316 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 106 :P 1u8xX 294 :E T0287 109 :L 1u8xX 297 :I T0287 113 :FD 1u8xX 301 :CD Number of specific fragments extracted= 3 number of extra gaps= 2 total=19660 # 1up8A.106.170 read from T0287.t04.many.frag # found chain 1up8A in template set T0287 106 :PNFLFSKFD 1up8A 170 :REIEFSEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19661 # 1qw9A.106.11 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 106 :PNFLF 1qw9A 12 :KDFKI T0287 113 :FD 1qw9A 19 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=19663 # 1wteA.106.98 read from T0287.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 106 :P 1wteA 99 :E T0287 108 :FLFSKFD 1wteA 101 :FIHPCFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19665 # 1s4nA.106.204 read from T0287.t04.many.frag # found chain 1s4nA in template set T0287 106 :PNFLFSKFD 1s4nA 299 :PEYLDENNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19666 # 1oqjA.106.77 read from T0287.t04.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1oqjA 164 :QIDFYQHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19667 # 1oygA.107.35 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)S111 (1oygA)P66 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLF 1oygA 62 :KYQV T0287 112 :KFDR 1oygA 67 :EFDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19669 # 1ox0A.107.108 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 107 :NFLFSK 1ox0A 90 :NLDVEA T0287 115 :R 1ox0A 98 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=19671 # 1zvdA.107.242 read from T0287.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)K112 (1zvdA)T616 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFS 1zvdA 611 :QHLLK T0287 113 :FDR 1zvdA 617 :FDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19673 # 1yw4A.107.243 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 107 :NFLFS 1yw4A 244 :QANVP T0287 113 :FDR 1yw4A 250 :LDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19675 # 1pkhA.107.15 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FDR 1pkhA 22 :FNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19677 # 1eokA.107.22 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 107 :NFLFSKFDR 1eokA 23 :TFKLKDIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19678 # 1tjvA.107.403 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1tjvA 404 :GITINKL T0287 115 :R 1tjvA 412 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19680 # 1qlmA.107.272 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 107 :N 1qlmA 273 :D T0287 109 :LFSKFDR 1qlmA 275 :DFYKIDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19682 # 1t4bA.107.211 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1t4bA 212 :ELPVDNF T0287 115 :R 1t4bA 220 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19684 # 1sbxA.107.60 read from T0287.t04.many.frag # found chain 1sbxA in training set T0287 107 :NFLFSKFDR 1sbxA 147 :HIYCSRCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19685 # 1pea.107.304 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1pea 306 :WRVEDVQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19686 # 1qw9A.107.12 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 107 :NFLF 1qw9A 13 :DFKI T0287 113 :FDR 1qw9A 19 :IDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19688 # 1n5uA.107.268 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F108 (1n5uA)S270 because G (3-10) conformation "forbidden" or filtered. T0287 107 :N 1n5uA 269 :D T0287 109 :LFSKFDR 1n5uA 271 :ISSKLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19690 # 1yt8A.107.457 read from T0287.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)S111 (1yt8A)D462 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLF 1yt8A 458 :VFLL T0287 113 :FDR 1yt8A 464 :GTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19692 # 1y93A.107.41 read from T0287.t04.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)K112 (1y93A)K151 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFS 1y93A 146 :PLKFS T0287 113 :FDR 1y93A 152 :INT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19694 # 1up8A.107.171 read from T0287.t04.many.frag # found chain 1up8A in template set T0287 107 :NFLFSKFDR 1up8A 171 :EIEFSEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19695 # 2f2gA.107.99 read from T0287.t04.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 2f2gA 101 :VDFSTVVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19696 # 1x9iA.107.12 read from T0287.t04.many.frag # found chain 1x9iA in training set T0287 107 :NFLFSKFDR 1x9iA 13 :NYILRRVDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19697 # 1uehA.107.165 read from T0287.t04.many.frag # found chain 1uehA in training set T0287 107 :NFLFSKFDR 1uehA 166 :NLQPDQIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19698 # 1gvjA.107.87 read from T0287.t04.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NF 1gvjA 383 :KM T0287 110 :FSKFDR 1gvjA 386 :YEKLSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19700 # 2b59B.107.154 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 107 :NFLFSKFD 2b59B 155 :GATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19701 # 1w4sA.107.113 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)S111 (1w4sA)E1047 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1w4sA)R1050 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLF 1w4sA 1043 :KLCP T0287 113 :F 1w4sA 1049 :F T0287 115 :R 1w4sA 1051 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=19704 # 1odmA.107.168 read from T0287.t04.many.frag # found chain 1odmA in training set T0287 107 :NFLFSKFDR 1odmA 169 :NFFARHFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19705 # 1u8xX.107.317 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 109 :L 1u8xX 297 :I T0287 113 :FDR 1u8xX 301 :CDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=19707 # 1srvA.107.114 read from T0287.t04.many.frag # found chain 1srvA in template set T0287 107 :NFLFSKFDR 1srvA 306 :GFKLENATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19708 # 2jdxA.107.205 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)N107 (2jdxA)K243 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 2jdxA 244 :FVTTEF T0287 115 :R 2jdxA 251 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=19710 # 1e4cP.107.43 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 107 :NFLFSKFDR 1e4cP 44 :GIPYEKLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19711 # 1oqjA.107.78 read from T0287.t04.many.frag # found chain 1oqjA in training set T0287 107 :NFLFSKFDR 1oqjA 164 :QIDFYQHDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19712 # 1rqpA.107.171 read from T0287.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)N107 (1rqpA)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1rqpA 173 :FPLSEV T0287 115 :R 1rqpA 180 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=19714 # 1w23A.107.319 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)K112 (1w23A)N325 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFS 1w23A 320 :GFVGL T0287 113 :FDR 1w23A 326 :GHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19716 # 1ox0A.108.109 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFSK 1ox0A 91 :LDVEA T0287 115 :RS 1ox0A 98 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19718 # 1oygA.108.36 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 108 :FLFSKFDRS 1oygA 63 :YQVPEFDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19719 # 1zvdA.108.243 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 108 :FLFSKFDRS 1zvdA 612 :HLLKTFDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19720 # 1qw9A.108.13 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 108 :FLF 1qw9A 14 :FKI T0287 113 :FDRS 1qw9A 19 :IDKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19722 # 1yw4A.108.244 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 108 :FLFSKFDRS 1yw4A 245 :ANVPDLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=19723 # 1pkhA.108.16 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 108 :FLFS 1pkhA 17 :IIIK T0287 113 :FDRS 1pkhA 22 :FNKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19725 # 1tjvA.108.404 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 108 :FLFSKFDRS 1tjvA 405 :ITINKLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19726 # 1t4bA.108.212 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1t4bA 213 :LPVDNF T0287 115 :RS 1t4bA 220 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19728 # 1eokA.108.23 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 108 :FLFSKFDRS 1eokA 24 :FKLKDIPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19729 # 1y93A.108.42 read from T0287.t04.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)K112 (1y93A)K151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFS 1y93A 147 :LKFS T0287 113 :FD 1y93A 152 :IN T0287 116 :S 1y93A 155 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=19732 # 1qlmA.108.273 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 109 :LFSKFDRS 1qlmA 275 :DFYKIDPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19733 # 1sbxA.108.61 read from T0287.t04.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)D114 (1sbxA)T154 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1sbxA 148 :IYCSRC T0287 115 :RS 1sbxA 155 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19735 # 1w4sA.108.114 read from T0287.t04.many.frag # found chain 1w4sA in template set T0287 108 :FLFSKFDRS 1w4sA 1044 :LCPENFRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19736 # 1up8A.108.172 read from T0287.t04.many.frag # found chain 1up8A in template set T0287 108 :FLFSKFDRS 1up8A 172 :IEFSEFDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19737 # 1srvA.108.115 read from T0287.t04.many.frag # found chain 1srvA in template set T0287 108 :FLFSKFDRS 1srvA 307 :FKLENATLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19738 # 1pe9A.108.286 read from T0287.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)L109 (1pe9A)T288 because D (zeta) conformation "forbidden" or filtered. T0287 108 :F 1pe9A 287 :F T0287 110 :FSKFDRS 1pe9A 289 :IANLSAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19740 # 1pea.108.305 read from T0287.t04.many.frag # found chain 1pea in template set T0287 108 :FLFSKFDRS 1pea 306 :WRVEDVQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19741 # 1e4cP.108.44 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 108 :FLFSKFDRS 1e4cP 45 :IPYEKLTES Number of specific fragments extracted= 1 number of extra gaps= 0 total=19742 # 1uehA.108.166 read from T0287.t04.many.frag # found chain 1uehA in training set T0287 108 :FLFSKFDRS 1uehA 167 :LQPDQIDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19743 # 1rqpA.108.172 read from T0287.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1rqpA 173 :FPLSEV T0287 115 :RS 1rqpA 180 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19745 # 1yt8A.108.458 read from T0287.t04.many.frag # found chain 1yt8A in template set T0287 108 :FLFSKFDRS 1yt8A 459 :FLLDGGTSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19746 # 2be1A.108.223 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 2be1A 334 :LLASDLDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19747 # 1n5uA.108.269 read from T0287.t04.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F108 (1n5uA)S270 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFSKFDRS 1n5uA 271 :ISSKLKEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=19748 # 1tt8A.108.103 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)R115 (1tt8A)K111 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1tt8A 104 :LALQKLG T0287 116 :S 1tt8A 112 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=19750 # 1odmA.108.169 read from T0287.t04.many.frag # found chain 1odmA in training set T0287 108 :FLFSKFDRS 1odmA 170 :FFARHFKPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19751 # 1bkrA.108.21 read from T0287.t04.many.frag # found chain 1bkrA in training set T0287 108 :FLFSKFDRS 1bkrA 22 :VNIHNFTTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19752 # 2b59B.108.155 read from T0287.t04.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19753 # 1hs6A.108.481 read from T0287.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1hs6A 481 :DDLNSF T0287 115 :RS 1hs6A 488 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19755 # 1my7A.108.23 read from T0287.t04.many.frag # found chain 1my7A in training set T0287 108 :FLFSKFDRS 1my7A 214 :LLCDKVQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19756 # 1u8xX.108.458 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 T0287 108 :FL 1u8xX 436 :DF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19758 # 1ox0A.109.110 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 109 :LFSK 1ox0A 92 :DVEA T0287 115 :RSI 1ox0A 98 :RDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19760 # 1oygA.109.37 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 109 :LFSKFDRSI 1oygA 64 :QVPEFDSST Number of specific fragments extracted= 1 number of extra gaps= 0 total=19761 # 1zvdA.109.244 read from T0287.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFSKF 1zvdA 613 :LLKTF T0287 115 :RSI 1zvdA 619 :EKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19763 # 1qw9A.109.14 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 109 :LF 1qw9A 15 :KI T0287 113 :FDRSI 1qw9A 19 :IDKRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19765 # 1yw4A.109.245 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 109 :LFSKFDRSI 1yw4A 246 :NVPDLDEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19766 # 1pkhA.109.17 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFS 1pkhA 18 :IIK T0287 113 :F 1pkhA 22 :F T0287 115 :RSI 1pkhA 24 :KDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=19769 # 1tjvA.109.405 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 109 :LFSKFDRSI 1tjvA 406 :TINKLSLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=19770 # 1t4bA.109.213 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F110 (1t4bA)V215 because G (3-10) conformation "forbidden" or filtered. T0287 109 :L 1t4bA 214 :P T0287 111 :SKFDRSI 1t4bA 216 :DNFGVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19772 # 1srvA.109.116 read from T0287.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 109 :LFSKF 1srvA 308 :KLENA T0287 115 :RSI 1srvA 314 :LSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19774 # 1qlmA.109.274 read from T0287.t04.many.frag # found chain 1qlmA in template set T0287 109 :LFSKFDRSI 1qlmA 275 :DFYKIDPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19775 # 1eokA.109.24 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)K112 (1eokA)D28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFS 1eokA 25 :KLK T0287 113 :FDR 1eokA 29 :IPD T0287 117 :I 1eokA 33 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=19778 # 1e4cP.109.45 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 109 :LFSKFDRSI 1e4cP 46 :PYEKLTESH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19779 # 1h2wA.109.316 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 109 :LFSKFDRSI 1h2wA 317 :DFTDPEESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19780 # 1sbxA.109.62 read from T0287.t04.many.frag # found chain 1sbxA in training set T0287 109 :LFSKFDRSI 1sbxA 149 :YCSRCTADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19781 # 1w4sA.109.115 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFS 1w4sA 1045 :CPE T0287 113 :FDRSI 1w4sA 1049 :FRDED Number of specific fragments extracted= 2 number of extra gaps= 1 total=19783 # 1y93A.109.43 read from T0287.t04.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)S116 (1y93A)G155 because S (epsilon) conformation "forbidden" or filtered. T0287 109 :LFSKFDR 1y93A 148 :KFSKINT T0287 117 :I 1y93A 156 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=19785 # 1tt8A.109.104 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1tt8A)T112 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFSKF 1tt8A 105 :ALQKL T0287 115 :R 1tt8A 111 :K T0287 117 :I 1tt8A 113 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=19788 # 1pe9A.109.287 read from T0287.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)L109 (1pe9A)T288 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1pe9A)A290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 110 :F 1pe9A 289 :I T0287 113 :FDRSI 1pe9A 292 :LSASK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19790 # 1uehA.109.167 read from T0287.t04.many.frag # found chain 1uehA in training set T0287 109 :LFSKFDRSI 1uehA 168 :QPDQIDEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19791 # 1rqpA.109.173 read from T0287.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)K112 (1rqpA)E177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1rqpA)R180 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFS 1rqpA 174 :PLS T0287 113 :F 1rqpA 178 :V T0287 116 :SI 1rqpA 181 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19794 # 1kg0C.109.54 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L109 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1kg0C)I148 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1kg0C 141 :FYGPTPD Number of specific fragments extracted= 1 number of extra gaps= 2 total=19795 # 1g9gA.109.98 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)K112 (1g9gA)R102 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFS 1g9gA 99 :SMS T0287 113 :FDRSI 1g9gA 103 :YDANK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19797 # 1up8A.109.173 read from T0287.t04.many.frag # found chain 1up8A in template set T0287 109 :LFSKFDRSI 1up8A 173 :EFSEFDSPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19798 # 1hs6A.109.482 read from T0287.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 1hs6A 482 :DLNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19800 # 1pea.109.306 read from T0287.t04.many.frag # found chain 1pea in template set T0287 109 :LFSKFDRSI 1pea 307 :RVEDVQRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19801 # 1ut7A.109.52 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D50 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RS 1ut7A 56 :PW Number of specific fragments extracted= 2 number of extra gaps= 3 total=19803 # 1qxmA.109.188 read from T0287.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)R115 (1qxmA)S181 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFSKFD 1qxmA 175 :LWQWFD T0287 116 :SI 1qxmA 182 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19805 # 2a3nA.109.260 read from T0287.t04.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 2a3nA 249 :ALELL T0287 115 :RSI 2a3nA 255 :KDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19807 # 1bkrA.109.22 read from T0287.t04.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)S111 (1bkrA)H25 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LF 1bkrA 23 :NI T0287 112 :KFDRSI 1bkrA 26 :NFTTSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=19809 # 1u8xX.109.459 read from T0287.t04.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 Warning: unaligning (T0287)I117 because last residue in template chain is (1u8xX)P445 T0287 109 :L 1u8xX 437 :F T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19811 # 1ox0A.110.111 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 110 :FSK 1ox0A 93 :VEA T0287 115 :RSIL 1ox0A 98 :RDRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19813 # 1oygA.110.38 read from T0287.t04.many.frag # found chain 1oygA in training set T0287 110 :FSKFDRSIL 1oygA 65 :VPEFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19814 # 1qw9A.110.15 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 110 :F 1qw9A 16 :I T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19816 # 1zvdA.110.245 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 110 :FSKFDRSIL 1zvdA 614 :LKTFDEKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19817 # 1yw4A.110.246 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)I117 (1yw4A)K254 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1yw4A 247 :VPDLDED T0287 118 :L 1yw4A 255 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19819 # 1t4bA.110.214 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 110 :FSKFDRSIL 1t4bA 215 :VDNFGVPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19820 # 1srvA.110.117 read from T0287.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)K112 (1srvA)N311 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 110 :FS 1srvA 309 :LE T0287 113 :F 1srvA 312 :A T0287 115 :RSIL 1srvA 314 :LSML Number of specific fragments extracted= 3 number of extra gaps= 2 total=19823 # 1h2wA.110.317 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 110 :FSKFDRSIL 1h2wA 318 :FTDPEESKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19824 # 1pkhA.110.18 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1pkhA)N23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1pkhA)F26 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1pkhA 19 :IK T0287 113 :F 1pkhA 22 :F T0287 115 :RS 1pkhA 24 :KD T0287 118 :L 1pkhA 27 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=19828 # 1tt8A.110.105 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1tt8A)K111 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKF 1tt8A 106 :LQKL T0287 116 :SIL 1tt8A 112 :TPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19830 # 1qlmA.110.275 read from T0287.t04.many.frag # found chain 1qlmA in template set T0287 110 :FSKFDRSIL 1qlmA 276 :FYKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19831 # 1tjvA.110.406 read from T0287.t04.many.frag # found chain 1tjvA in template set T0287 110 :FSKFDRSIL 1tjvA 407 :INKLSLEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19832 # 1w4sA.110.116 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)D114 (1w4sA)R1050 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKF 1w4sA 1046 :PENF T0287 115 :RSIL 1w4sA 1051 :DEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19834 # 1e4cP.110.46 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 110 :FSKFDRSIL 1e4cP 47 :YEKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19835 # 1kg0C.110.55 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)D114 (1kg0C)T145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 T0287 110 :FSKF 1kg0C 141 :FYGP T0287 115 :RSI 1kg0C 146 :PDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=19837 # 1eokA.110.25 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 110 :FSKFDRSIL 1eokA 26 :LKDIPDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19838 # 1xruA.110.41 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)S116 (1xruA)I45 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKFDR 1xruA 39 :YSHIDR T0287 117 :IL 1xruA 46 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19840 # 1pea.110.307 read from T0287.t04.many.frag # found chain 1pea in template set T0287 110 :FSKFDRSIL 1pea 308 :VEDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19841 # 1qxmA.110.189 read from T0287.t04.many.frag # found chain 1qxmA in training set T0287 110 :FSKFDRSIL 1qxmA 176 :WQWFDSSRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19842 # 1l8bA.110.114 read from T0287.t04.many.frag # found chain 1l8bA in training set T0287 110 :FSKFDRSIL 1l8bA 142 :FDDYSDDVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=19843 # 1rqpA.110.174 read from T0287.t04.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)K112 (1rqpA)E177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1rqpA)P181 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FS 1rqpA 175 :LS T0287 113 :F 1rqpA 178 :V T0287 115 :R 1rqpA 180 :R T0287 117 :IL 1rqpA 182 :LE Number of specific fragments extracted= 4 number of extra gaps= 3 total=19847 # 1ut7A.110.53 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RSIL 1ut7A 56 :PWVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19849 # 1g4mA.110.306 read from T0287.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1g4mA)N311 because N (gamma') conformation "forbidden" or filtered. T0287 110 :FS 1g4mA 307 :RE T0287 113 :F 1g4mA 310 :A T0287 115 :RSIL 1g4mA 312 :REIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19852 # 1vefA.110.361 read from T0287.t04.many.frag # found chain 1vefA in template set T0287 110 :FSKFDRSIL 1vefA 362 :ALQAGPTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19853 # 1sbxA.110.63 read from T0287.t04.many.frag # found chain 1sbxA in training set T0287 110 :FSKFDRSIL 1sbxA 150 :CSRCTADQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19854 # 1hs6A.110.483 read from T0287.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)K492 T0287 110 :FSKF 1hs6A 483 :LNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=19856 # 1uehA.110.168 read from T0287.t04.many.frag # found chain 1uehA in training set T0287 110 :FSKFDRSIL 1uehA 169 :PDQIDEEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=19857 # 1w23A.110.322 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FSKFDRSI 1w23A 323 :GLNGHRSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19858 # 1g9gA.110.99 read from T0287.t04.many.frag # found chain 1g9gA in template set T0287 110 :FSKFDRSIL 1g9gA 100 :MSRYDANKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19859 # 1nkr.110.66 read from T0287.t04.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)I117 (1nkr)L73 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1nkr 66 :ISRMTQD T0287 118 :L 1nkr 74 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=19861 # 1ox0A.111.112 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 111 :SK 1ox0A 94 :EA T0287 115 :RSILG 1ox0A 98 :RDRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19863 # 1qw9A.111.16 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19864 # 1oygA.111.39 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 T0287 111 :SKFDRSIL 1oygA 66 :PEFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19865 # 1yw4A.111.247 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 111 :SKFDRSILG 1yw4A 248 :PDLDEDKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19866 # 1zvdA.111.246 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 111 :SKFDRSILG 1zvdA 615 :KTFDEKELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19867 # 1h2wA.111.318 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)I117 (1h2wA)K325 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDRS 1h2wA 319 :TDPEES T0287 118 :LG 1h2wA 326 :WK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19869 # 1t4bA.111.215 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKF 1t4bA 216 :DNF T0287 115 :RSILG 1t4bA 220 :VPLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19871 # 1srvA.111.118 read from T0287.t04.many.frag # found chain 1srvA in template set T0287 111 :SKFDRSILG 1srvA 310 :ENATLSMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19872 # 1tt8A.111.106 read from T0287.t04.many.frag # found chain 1tt8A in training set T0287 111 :SKFDRSILG 1tt8A 107 :QKLGKTPLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19873 # 1xruA.111.42 read from T0287.t04.many.frag # found chain 1xruA in template set T0287 111 :SKFDRSILG 1xruA 40 :SHIDRIIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19874 # 1g4mA.111.307 read from T0287.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 111 :S 1g4mA 308 :E T0287 113 :FDRSILG 1g4mA 310 :ANREILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19876 # 1w4sA.111.117 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)S111 (1w4sA)E1047 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1w4sA 1048 :NFRDEDV Number of specific fragments extracted= 1 number of extra gaps= 2 total=19877 # 1kg0C.111.56 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)K112 (1kg0C)G143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1kg0C)T145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 111 :S 1kg0C 142 :Y T0287 113 :F 1kg0C 144 :P T0287 115 :RSI 1kg0C 146 :PDI Number of specific fragments extracted= 3 number of extra gaps= 3 total=19880 # 1vefA.111.362 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)K112 (1vefA)Q364 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :S 1vefA 363 :L T0287 113 :FDRSILG 1vefA 365 :AGPTVIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19882 # 1l8bA.111.115 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)S111 (1l8bA)D143 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KFDRSILG 1l8bA 144 :DYSDDVCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19883 # 1qxmA.111.190 read from T0287.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 111 :SKF 1qxmA 177 :QWF T0287 115 :RSILG 1qxmA 181 :SSRQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19885 # 1ut7A.111.54 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 111 :SK 1ut7A 52 :YK T0287 115 :RSILG 1ut7A 56 :PWVLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19887 # 1tjvA.111.407 read from T0287.t04.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :SKF 1tjvA 408 :NKL T0287 115 :RSILG 1tjvA 412 :LEDLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19889 # 1w23A.111.323 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKFDRSI 1w23A 324 :LNGHRSV T0287 119 :G 1w23A 332 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=19891 # 1pkhA.111.19 read from T0287.t04.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1pkhA)F26 because G (3-10) conformation "forbidden" or filtered. T0287 111 :S 1pkhA 20 :K T0287 113 :FDRS 1pkhA 22 :FNKD T0287 118 :LG 1pkhA 27 :VG Number of specific fragments extracted= 3 number of extra gaps= 2 total=19894 # 1qlmA.111.276 read from T0287.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)G119 (1qlmA)A285 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1qlmA 277 :YKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19895 # 1e4cP.111.47 read from T0287.t04.many.frag # found chain 1e4cP in training set T0287 111 :SKFDRSILG 1e4cP 48 :EKLTESHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19896 # 1nkr.111.67 read from T0287.t04.many.frag # found chain 1nkr in training set T0287 111 :SKFDRSILG 1nkr 67 :SRMTQDLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19897 # 2a3nA.111.262 read from T0287.t04.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2a3nA)D256 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKF 2a3nA 251 :ELL T0287 115 :R 2a3nA 255 :K T0287 117 :ILG 2a3nA 257 :VPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19900 # 1g9gA.111.100 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)S116 (1g9gA)N106 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDR 1g9gA 101 :SRYDA T0287 117 :ILG 1g9gA 107 :KPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19902 # 1eokA.111.26 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKFDR 1eokA 27 :KDIPD T0287 117 :ILG 1eokA 33 :VDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19904 # 1ogoX.111.139 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKFDR 1ogoX 140 :SQSDD T0287 117 :ILG 1ogoX 146 :GIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19906 # 1ig0A.111.178 read from T0287.t04.many.frag # found chain 1ig0A in training set T0287 111 :SKFDRSILG 1ig0A 179 :SKVTPISLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19907 # 1pe9A.111.289 read from T0287.t04.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1pe9A)K296 because G (3-10) conformation "forbidden" or filtered. T0287 111 :S 1pe9A 290 :A T0287 113 :FDRS 1pe9A 292 :LSAS T0287 118 :LG 1pe9A 297 :AC Number of specific fragments extracted= 3 number of extra gaps= 2 total=19910 # 1pea.111.308 read from T0287.t04.many.frag # found chain 1pea in template set Warning: unaligning (T0287)G119 (1pea)D317 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1pea 309 :EDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19911 # 1ox0A.112.113 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 112 :K 1ox0A 95 :A T0287 115 :RSILGI 1ox0A 98 :RDRFGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19913 # 1qw9A.112.17 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 2 total=19914 # 1yw4A.112.248 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1yw4A)D253 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDR 1yw4A 250 :LDE T0287 117 :IL 1yw4A 254 :KL T0287 120 :I 1yw4A 257 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=19917 # 1h2wA.112.319 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 112 :KFDRSILGI 1h2wA 320 :DPEESKWKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19918 # 1zvdA.112.247 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 112 :KFDRSILGI 1zvdA 616 :TFDEKELEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19919 # 1xruA.112.43 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 112 :KF 1xruA 41 :HI T0287 115 :RSILGI 1xruA 44 :RIIVGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19921 # 1oygA.112.40 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)N75 T0287 112 :KFDRSIL 1oygA 67 :EFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19922 # 1t4bA.112.216 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 112 :KF 1t4bA 217 :NF T0287 115 :RSILGI 1t4bA 220 :VPLAGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19924 # 1g4mA.112.308 read from T0287.t04.many.frag # found chain 1g4mA in template set T0287 112 :KFDRSILGI 1g4mA 309 :GANREILGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19925 # 1vefA.112.363 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KF 1vefA 364 :QA T0287 115 :RSILGI 1vefA 367 :PTVIRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19927 # 1srvA.112.119 read from T0287.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)I117 (1srvA)M316 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1srvA)G318 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KFDRS 1srvA 311 :NATLS T0287 118 :L 1srvA 317 :L T0287 120 :I 1srvA 319 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=19930 # 1tt8A.112.107 read from T0287.t04.many.frag # found chain 1tt8A in training set T0287 112 :KFDRSILGI 1tt8A 108 :KLGKTPLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19931 # 1l8bA.112.116 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)S116 (1l8bA)D148 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KFDR 1l8bA 144 :DYSD T0287 117 :ILGI 1l8bA 149 :VCGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19933 # 3cla.112.132 read from T0287.t04.many.frag # found chain 3cla in training set T0287 112 :KFDRSILGI 3cla 139 :VTPENHLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19934 # 1qxmA.112.191 read from T0287.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)K112 (1qxmA)W178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1qxmA)K185 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1qxmA 179 :FDSSRQ T0287 120 :I 1qxmA 186 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=19936 # 1chd.112.123 read from T0287.t04.many.frag # found chain 1chd in training set T0287 112 :KFDRSILGI 1chd 270 :HAGRNAVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19937 # 1ogoX.112.140 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 112 :KFDRSILGI 1ogoX 141 :QSDDGGIVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19938 # 1kg0C.112.57 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)K112 (1kg0C)G143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :FDRSI 1kg0C 144 :PTPDI T0287 120 :I 1kg0C 151 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=19940 # 1w4sA.112.118 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)I117 (1w4sA)D1053 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRS 1w4sA 1048 :NFRDE T0287 118 :L 1w4sA 1054 :V T0287 120 :I 1w4sA 1056 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=19943 # 2fckA.112.128 read from T0287.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)D114 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 112 :KF 2fckA 126 :RL T0287 115 :RSIL 2fckA 129 :LTRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=19945 # 1w23A.112.324 read from T0287.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KF 1w23A 325 :NG T0287 115 :RSI 1w23A 328 :RSV T0287 119 :GI 1w23A 332 :GC Number of specific fragments extracted= 3 number of extra gaps= 2 total=19948 # 2a3nA.112.263 read from T0287.t04.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2a3nA)D256 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2a3nA)L259 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 2a3nA 252 :LL T0287 115 :R 2a3nA 255 :K T0287 117 :IL 2a3nA 257 :VP T0287 120 :I 2a3nA 260 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=19952 # 1qs1A.112.198 read from T0287.t04.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1qs1A 199 :SKERVIL T0287 120 :I 1qs1A 207 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19954 # 2be1A.112.227 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 112 :KFDR 2be1A 338 :DLDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19955 # 1wl8A.112.69 read from T0287.t04.many.frag # found chain 1wl8A in template set Warning: unaligning (T0287)D114 (1wl8A)N72 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1wl8A 70 :EF T0287 115 :RSILGI 1wl8A 73 :VPILGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19957 # 1ut7A.112.55 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 112 :K 1ut7A 53 :K T0287 115 :RS 1ut7A 56 :PW T0287 118 :LGI 1ut7A 59 :LPN Number of specific fragments extracted= 3 number of extra gaps= 2 total=19960 # 1nkr.112.68 read from T0287.t04.many.frag # found chain 1nkr in training set Warning: unaligning (T0287)I117 (1nkr)L73 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KFDRS 1nkr 68 :RMTQD T0287 118 :LGI 1nkr 74 :AGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19962 # 1wd3A.112.26 read from T0287.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0287)K112 (1wd3A)S44 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1wd3A)G47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1wd3A)Y50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1wd3A)Q51 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FD 1wd3A 45 :FS T0287 116 :SI 1wd3A 48 :AL T0287 120 :I 1wd3A 52 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=19965 # 1as4B.112.7 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)R115 (1as4B)R368 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KFD 1as4B 365 :RFN T0287 116 :SILGI 1as4B 369 :PFLMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19967 # 2bw3A.112.110 read from T0287.t04.many.frag # found chain 2bw3A in template set Warning: unaligning (T0287)D114 (2bw3A)K188 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2bw3A)G193 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KF 2bw3A 186 :YI T0287 115 :RSIL 2bw3A 189 :RNFL T0287 120 :I 2bw3A 194 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=19970 # 1ox0A.113.114 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)I117 (1ox0A)R100 because G (3-10) conformation "forbidden" or filtered. T0287 115 :RS 1ox0A 98 :RD T0287 118 :LGIF 1ox0A 101 :FGVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=19972 # 1qw9A.113.18 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19973 # 1yw4A.113.249 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)S116 (1yw4A)D253 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDR 1yw4A 250 :LDE T0287 117 :IL 1yw4A 254 :KL T0287 120 :IF 1yw4A 257 :LF Number of specific fragments extracted= 3 number of extra gaps= 2 total=19976 # 1h2wA.113.320 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 113 :FDRSILGIF 1h2wA 321 :PEESKWKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19977 # 3cla.113.133 read from T0287.t04.many.frag # found chain 3cla in training set T0287 113 :FDRSILGIF 3cla 140 :TPENHLNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19978 # 1seiA.113.53 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)F113 (1seiA)N54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. T0287 115 :RSILGIF 1seiA 56 :QGILRIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=19979 # 1ogoX.113.141 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1ogoX 142 :SDDGGI T0287 120 :IF 1ogoX 149 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19981 # 1chd.113.124 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1chd 271 :A T0287 115 :RSILGIF 1chd 273 :RNAVGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19983 # 1g4mA.113.309 read from T0287.t04.many.frag # found chain 1g4mA in template set T0287 113 :FDRSILGIF 1g4mA 310 :ANREILGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=19984 # 1vefA.113.364 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :F 1vefA 365 :A T0287 115 :RSIL 1vefA 367 :PTVI T0287 120 :IF 1vefA 372 :FL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19987 # 1xruA.113.44 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. T0287 113 :F 1xruA 42 :I T0287 116 :SILGIF 1xruA 45 :IIVGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19989 # 1qxmA.113.192 read from T0287.t04.many.frag # found chain 1qxmA in training set T0287 113 :FDRSILGIF 1qxmA 179 :FDSSRQKWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19990 # 1l8bA.113.117 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)G119 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :FDRSIL 1l8bA 145 :YSDDVC T0287 120 :IF 1l8bA 152 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19992 # 1srvA.113.120 read from T0287.t04.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)I117 (1srvA)M316 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRS 1srvA 312 :ATLS T0287 118 :LGIF 1srvA 317 :LGRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19994 # 1t4bA.113.217 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 (1t4bA)S225 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :F 1t4bA 218 :F T0287 115 :RSILG 1t4bA 220 :VPLAG T0287 121 :F 1t4bA 226 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=19997 # 1crzA.113.225 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 113 :FDRSILGIF 1crzA 232 :PDGSKLAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19998 # 2fckA.113.129 read from T0287.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)D114 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 113 :F 2fckA 127 :L T0287 115 :RSIL 2fckA 129 :LTRL T0287 121 :F 2fckA 135 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=20001 # 1kg0C.113.58 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :FDRSI 1kg0C 144 :PTPDI T0287 120 :IF 1kg0C 151 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20003 # 1tt8A.113.108 read from T0287.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)R115 (1tt8A)K111 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FD 1tt8A 109 :LG T0287 116 :SILGIF 1tt8A 112 :TPLGRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20005 # 2a3nA.113.264 read from T0287.t04.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :F 2a3nA 253 :L T0287 115 :RSILGIF 2a3nA 255 :KDVPLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20007 # 1zvdA.113.248 read from T0287.t04.many.frag # found chain 1zvdA in template set T0287 113 :FDRSILGIF 1zvdA 617 :FDEKELELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20008 # 1as4B.113.8 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)R115 (1as4B)R368 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FD 1as4B 366 :FN T0287 117 :ILGIF 1as4B 370 :FLMII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20010 # 1w23A.113.325 read from T0287.t04.many.frag # found chain 1w23A in training set T0287 113 :FDRSILGIF 1w23A 326 :GHRSVGGCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20011 # 2be1A.113.228 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 113 :FDRS 2be1A 339 :LDFR T0287 121 :F 2be1A 347 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20013 # 1u7iA.113.46 read from T0287.t04.many.frag # found chain 1u7iA in training set T0287 113 :FDRSILGIF 1u7iA 45 :PEGSVLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20014 # 1qs1A.113.199 read from T0287.t04.many.frag # found chain 1qs1A in training set T0287 113 :FDRSILGIF 1qs1A 200 :KERVILKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20015 # 1n7zA.113.80 read from T0287.t04.many.frag # found chain 1n7zA in template set T0287 113 :FDRSILGIF 1n7zA 81 :VLPSMLDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20016 # 1w4sA.113.119 read from T0287.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)I117 (1w4sA)D1053 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRS 1w4sA 1049 :FRDE T0287 118 :LGIF 1w4sA 1054 :VYVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=20018 # 1lm8V.113.26 read from T0287.t04.many.frag # found chain 1lm8V in template set T0287 113 :FDRSILGIF 1lm8V 80 :SPRVVLPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20019 # 1w66A.113.127 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1w66A)V127 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIF 1w66A 130 :RSGVW Number of specific fragments extracted= 2 number of extra gaps= 2 total=20021 # 1h2wA.114.321 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 114 :DRSILGIFL 1h2wA 322 :EESKWKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20022 # 1ox0A.114.115 read from T0287.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 Warning: unaligning (T0287)I117 (1ox0A)R100 because G (3-10) conformation "forbidden" or filtered. T0287 115 :RS 1ox0A 98 :RD T0287 118 :LGIFL 1ox0A 101 :FGVIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20024 # 1qw9A.114.19 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 114 :DRSILG 1qw9A 20 :DKRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=20026 # 1seiA.114.54 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20027 # 1w66A.114.128 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 T0287 115 :RSILGIFL 1w66A 128 :DGRSGVWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20028 # 1ogoX.114.142 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :DR 1ogoX 143 :DD T0287 117 :ILGIFL 1ogoX 146 :GIVIRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20030 # 3cla.114.134 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 3cla 141 :PENHL T0287 120 :IFL 3cla 147 :ISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20032 # 1yw4A.114.250 read from T0287.t04.many.frag # found chain 1yw4A in template set T0287 114 :DRSILGIFL 1yw4A 251 :DEDKLPLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20033 # 1chd.114.125 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1chd 273 :RNAV T0287 120 :IFL 1chd 278 :VIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20035 # 1crzA.114.226 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1crzA 233 :D T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20037 # 1g4mA.114.310 read from T0287.t04.many.frag # found chain 1g4mA in template set T0287 114 :DRSILGIFL 1g4mA 311 :NREILGIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20038 # 1l8bA.114.118 read from T0287.t04.many.frag # found chain 1l8bA in training set T0287 114 :DRSILGIFL 1l8bA 146 :SDDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20039 # 1t4bA.114.218 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 114 :DRSILGIFL 1t4bA 219 :GVPLAGSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20040 # 1xruA.114.45 read from T0287.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. T0287 114 :D 1xruA 43 :D T0287 116 :SILGIFL 1xruA 45 :IIVGGIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=20042 # 1vefA.114.365 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1vefA 367 :PTVI T0287 120 :IFL 1vefA 372 :FLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=20044 # 1wurA.114.80 read from T0287.t04.many.frag # found chain 1wurA in template set T0287 114 :DRSILGIFL 1wurA 81 :EEVVGGAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20045 # 1qxmA.114.193 read from T0287.t04.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)G119 (1qxmA)K185 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 1qxmA 180 :DSSRQ T0287 120 :IFL 1qxmA 186 :WII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20047 # 2be1A.114.129 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)R115 (2be1A)G241 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 T0287 114 :D 2be1A 240 :N T0287 116 :SILGIF 2be1A 242 :EIISAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20049 # 1kg0C.114.59 read from T0287.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 114 :DRSI 1kg0C 145 :TPDI T0287 120 :IFL 1kg0C 151 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20051 # 2asbA.114.22 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)R115 (2asbA)R128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :D 2asbA 127 :A T0287 116 :SIL 2asbA 129 :GLV T0287 120 :IF 2asbA 133 :VR Number of specific fragments extracted= 3 number of extra gaps= 3 total=20054 # 1u7iA.114.47 read from T0287.t04.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1u7iA 46 :E T0287 116 :SILGIFL 1u7iA 48 :SVLKALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20056 # 1as4B.114.9 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)R115 (1as4B)R368 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1as4B)F370 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :D 1as4B 367 :N T0287 116 :S 1as4B 369 :P T0287 118 :L 1as4B 371 :L T0287 120 :IFL 1as4B 373 :IIV Number of specific fragments extracted= 4 number of extra gaps= 3 total=20060 # 1oewA.114.243 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRSILGIF 1oewA 244 :SSSVGGYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20061 # 1w23A.114.326 read from T0287.t04.many.frag # found chain 1w23A in training set T0287 114 :DRSILGIFL 1w23A 327 :HRSVGGCRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20062 # 2a3nA.114.265 read from T0287.t04.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)G119 (2a3nA)L259 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 2a3nA 254 :EKDVP T0287 120 :IFL 2a3nA 260 :ILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20064 # 2be1A.114.229 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 114 :DR 2be1A 340 :DF T0287 121 :FL 2be1A 347 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20066 # 1lm8V.114.27 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DRSIL 1lm8V 81 :PRVVL T0287 120 :IFL 1lm8V 87 :VWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20068 # 2f6kA.114.114 read from T0287.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)R115 (2f6kA)D116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. T0287 114 :D 2f6kA 115 :Q T0287 117 :ILGIFL 2f6kA 118 :ALGVTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20070 # 1my7A.114.29 read from T0287.t04.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)D114 (1my7A)Q220 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1my7A)E225 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSIL 1my7A 221 :KEDI T0287 120 :IFL 1my7A 226 :VYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20072 # 1n7zA.114.81 read from T0287.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0287)D114 (1n7zA)L82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1n7zA)M85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1n7zA)D87 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RS 1n7zA 83 :PS T0287 118 :L 1n7zA 86 :L T0287 120 :IFL 1n7zA 88 :AVI Number of specific fragments extracted= 3 number of extra gaps= 3 total=20075 # 1h2wA.115.322 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 115 :RSILGIFLP 1h2wA 323 :ESKWKVLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20076 # 1w66A.115.129 read from T0287.t04.many.frag # found chain 1w66A in template set T0287 115 :RSILGIFLP 1w66A 128 :DGRSGVWLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20077 # 1qw9A.115.20 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 T0287 115 :RSIL 1qw9A 21 :KRIY T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=20079 # 1seiA.115.55 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20080 # 1ogoX.115.143 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1ogoX 144 :D T0287 117 :ILGIFLP 1ogoX 146 :GIVIRVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20082 # 3cla.115.135 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 3cla 142 :ENHLNISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20083 # 1t4bA.115.219 read from T0287.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)I120 (1t4bA)S225 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILG 1t4bA 220 :VPLAG T0287 121 :FLP 1t4bA 226 :LIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20085 # 1crzA.115.227 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 T0287 116 :SIL 1crzA 235 :SKL T0287 121 :FL 1crzA 240 :AL Number of specific fragments extracted= 2 number of extra gaps= 3 total=20087 # 1ox0A.115.116 read from T0287.t04.many.frag # found chain 1ox0A in training set T0287 115 :RSILGIFLP 1ox0A 98 :RDRFGVIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20088 # 1oewA.115.244 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSI 1oewA 245 :SSV T0287 119 :GIF 1oewA 249 :GYV T0287 123 :P 1oewA 253 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=20091 # 1wurA.115.81 read from T0287.t04.many.frag # found chain 1wurA in template set T0287 115 :RSILGIFLP 1wurA 82 :EVVGGAVFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20092 # 1chd.115.126 read from T0287.t04.many.frag # found chain 1chd in training set T0287 115 :RSILGIFLP 1chd 273 :RNAVGVILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20093 # 1t1uA.115.165 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)R167 Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLP 1t1uA 170 :SSYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20094 # 2be1A.115.130 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)G119 (2be1A)S245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 T0287 115 :RSIL 2be1A 241 :GEII T0287 120 :IF 2be1A 246 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20096 # 1g4mA.115.311 read from T0287.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)P123 (1g4mA)S320 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1g4mA 312 :REILGIIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20097 # 1yw4A.115.251 read from T0287.t04.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1yw4A 252 :EDKL T0287 120 :IFLP 1yw4A 257 :LFRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20099 # 2asbA.115.23 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILGIF 2asbA 128 :RGLVVVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20100 # 1as4B.115.10 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)I117 (1as4B)F370 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RS 1as4B 368 :RP T0287 118 :LGIFLP 1as4B 371 :LMIIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20102 # 1jo0A.115.78 read from T0287.t04.many.frag # found chain 1jo0A in training set T0287 115 :RSILGIFLP 1jo0A 80 :GHILVLYRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20103 # 1wdaA.115.582 read from T0287.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 115 :RSILGI 1wdaA 576 :FSKAEA T0287 123 :P 1wdaA 584 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20105 # 1l8bA.115.119 read from T0287.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)S116 (1l8bA)D148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1l8bA)N155 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :R 1l8bA 147 :D T0287 117 :ILGIFL 1l8bA 149 :VCGAVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20107 # 1l1dA.115.43 read from T0287.t04.many.frag # found chain 1l1dA in template set T0287 115 :RSILGIFLP 1l1dA 414 :LFKPGIYVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20108 # 1kaeA.115.123 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 115 :RSILGIFLP 1kaeA 124 :VASVGLYIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20109 # 1xruA.115.46 read from T0287.t04.many.frag # found chain 1xruA in template set T0287 115 :RSILGIFLP 1xruA 44 :RIIVGGIMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20110 # 1t61A.115.157 read from T0287.t04.many.frag # found chain 1t61A in training set T0287 115 :RSILGIFLP 1t61A 158 :LASPGSCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20111 # 2bzvA.115.66 read from T0287.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)S116 (2bzvA)N282 because G (3-10) conformation "forbidden" or filtered. T0287 115 :R 2bzvA 281 :D T0287 117 :ILGIFLP 2bzvA 283 :ALSLKLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20113 # 1lm8V.115.28 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1lm8V 82 :RVVL T0287 120 :IFLP 1lm8V 87 :VWLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20115 # 2be1A.115.230 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 115 :R 2be1A 341 :F T0287 121 :FLP 2be1A 347 :VSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20117 # 1vefA.115.366 read from T0287.t04.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)S116 (1vefA)T368 because G (3-10) conformation "forbidden" or filtered. T0287 115 :R 1vefA 367 :P T0287 117 :ILGIFLP 1vefA 369 :VIRFLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20119 # 2f6kA.115.115 read from T0287.t04.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. T0287 115 :R 2f6kA 116 :D T0287 117 :ILGIFLP 2f6kA 118 :ALGVTVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20121 # 1h2wA.116.323 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1h2wA 324 :SKW T0287 120 :IFLPF 1h2wA 328 :VLVPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20123 # 1w66A.116.130 read from T0287.t04.many.frag # found chain 1w66A in template set T0287 116 :SILGIFLPF 1w66A 129 :GRSGVWLPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20124 # 1seiA.116.56 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SILGIFL 1seiA 57 :GILRIFL T0287 124 :F 1seiA 65 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=20126 # 1qw9A.116.21 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 116 :SILG 1qw9A 22 :RIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=20128 # 1ogoX.116.144 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)L122 (1ogoX)V151 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SILGIF 1ogoX 145 :GGIVIR T0287 123 :PF 1ogoX 152 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20130 # 1t4bA.116.220 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 116 :SILGIFLPF 1t4bA 221 :PLAGSLIPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20131 # 1wurA.116.82 read from T0287.t04.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 116 :SI 1wurA 83 :VV T0287 119 :GIFLPF 1wurA 86 :GAVFPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20133 # 3cla.116.136 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SIL 3cla 143 :NHL T0287 120 :IFL 3cla 147 :ISA T0287 124 :F 3cla 151 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=20136 # 1t1uA.116.166 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLPF 1t1uA 170 :SSYRLPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20137 # 1crzA.116.228 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20138 # 1as4B.116.11 read from T0287.t04.many.frag # found chain 1as4B in template set T0287 116 :SILGIFLPF 1as4B 369 :PFLMIIVPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20139 # 1chd.116.127 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)F124 (1chd)G282 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1chd 274 :NAVGVILT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20140 # 1oewA.116.245 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SILGIF 1oewA 246 :SVGGYV T0287 123 :PF 1oewA 253 :PC Number of specific fragments extracted= 2 number of extra gaps= 1 total=20142 # 1kaeA.116.124 read from T0287.t04.many.frag # found chain 1kaeA in training set T0287 116 :SILGIFLPF 1kaeA 125 :ASVGLYIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20143 # 2be1A.116.131 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 T0287 116 :SILGIF 2be1A 242 :EIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20144 # 1jo0A.116.79 read from T0287.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1jo0A 81 :HIL T0287 120 :IFLPF 1jo0A 85 :LYRPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20146 # 3eipA.116.52 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 116 :SILGIFLPF 3eipA 53 :EWVPLLQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=20147 # 1xruA.116.47 read from T0287.t04.many.frag # found chain 1xruA in template set T0287 116 :SILGIFLPF 1xruA 45 :IIVGGIMPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20148 # 1wdaA.116.583 read from T0287.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)G119 (1wdaA)E580 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SIL 1wdaA 577 :SKA T0287 120 :I 1wdaA 581 :A T0287 123 :PF 1wdaA 584 :PN Number of specific fragments extracted= 3 number of extra gaps= 2 total=20151 # 1g9gA.116.105 read from T0287.t04.many.frag # found chain 1g9gA in template set T0287 116 :SILGIFLPF 1g9gA 106 :NKPATYAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20152 # 2be1A.116.231 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPF 2be1A 347 :VSPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20153 # 1lm8V.116.29 read from T0287.t04.many.frag # found chain 1lm8V in template set T0287 116 :SILGIFLPF 1lm8V 83 :VVLPVWLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20154 # 1t61A.116.158 read from T0287.t04.many.frag # found chain 1t61A in training set T0287 116 :SILGIFLPF 1t61A 159 :ASPGSCLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20155 # 1cv8.116.134 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 116 :SIL 1cv8 135 :EVI T0287 120 :IFL 1cv8 139 :IWN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20157 # 2bjqA.116.226 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SILGIF 2bjqA 227 :PVFGRA T0287 123 :PF 2bjqA 234 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20159 # 2bzvA.116.67 read from T0287.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)G119 (2bzvA)S285 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 2bzvA 282 :NAL T0287 120 :IFLPF 2bzvA 286 :LKLPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20161 # 1l1dA.116.44 read from T0287.t04.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)G119 (1l1dA)G418 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 1l1dA 415 :FKP T0287 120 :IFLPF 1l1dA 419 :IYVDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20163 # 1ewfA.116.200 read from T0287.t04.many.frag # found chain 1ewfA in training set T0287 116 :SILGIFLPF 1ewfA 201 :SVAGINYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20164 # 1repC.116.133 read from T0287.t04.many.frag # found chain 1repC in template set T0287 116 :SILGIFLPF 1repC 134 :YLIPFFIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20165 # 1t62A.116.68 read from T0287.t04.many.frag # found chain 1t62A in template set T0287 116 :SILGIFLPF 1t62A 1069 :GQYDIILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20166 # 1h2wA.117.324 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 117 :ILGIFLPFF 1h2wA 325 :KWKVLVPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=20167 # 1w66A.117.131 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 117 :IL 1w66A 130 :RS T0287 120 :IFLPFF 1w66A 133 :VWLPGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20169 # 1seiA.117.57 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :ILGIFL 1seiA 58 :ILRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20171 # 1ogoX.117.145 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 117 :ILGIFLPFF 1ogoX 146 :GIVIRVPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20172 # 1qw9A.117.22 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 117 :ILG 1qw9A 23 :IYG T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20175 # 1t1uA.117.167 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=20177 # 1as4B.117.12 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)I117 (1as4B)F370 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1as4B 371 :LMIIVPTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20178 # 3cla.117.137 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 117 :ILGIFL 3cla 144 :HLNISA T0287 124 :FF 3cla 151 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20180 # 1crzA.117.229 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 117 :ILGIFL 1crzA 236 :KLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20181 # 1kaeA.117.125 read from T0287.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)F124 (1kaeA)G133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. T0287 117 :ILGIFLP 1kaeA 126 :SVGLYIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20182 # 3eipA.117.53 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 117 :ILGIFLPFF 3eipA 54 :WVPLLQPYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20183 # 1jo0A.117.80 read from T0287.t04.many.frag # found chain 1jo0A in training set T0287 117 :ILGIFLPFF 1jo0A 82 :ILVLYRPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20184 # 1chd.117.128 read from T0287.t04.many.frag # found chain 1chd in training set T0287 117 :ILGIFLPFF 1chd 275 :AVGVILTGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=20185 # 1t4bA.117.221 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 117 :ILGIFLPFF 1t4bA 222 :LAGSLIPWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20186 # 2be1A.117.132 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 T0287 117 :ILGIF 2be1A 243 :IISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20187 # 1cv8.117.135 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 117 :IL 1cv8 136 :VI T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=20190 # 1g9gA.117.106 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1g9gA 107 :KP T0287 120 :IFLPFF 1g9gA 110 :TYAPEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20192 # 1oewA.117.246 read from T0287.t04.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :I 1oewA 247 :V T0287 119 :GIF 1oewA 249 :GYV T0287 123 :PFF 1oewA 253 :PCS Number of specific fragments extracted= 3 number of extra gaps= 2 total=20195 # 1f8eA.117.74 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 117 :IL 1f8eA 156 :RA T0287 120 :IF 1f8eA 159 :IS T0287 123 :PF 1f8eA 162 :PL Number of specific fragments extracted= 3 number of extra gaps= 3 total=20198 # 1t61A.117.159 read from T0287.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. T0287 117 :ILG 1t61A 160 :SPG T0287 121 :FLPFF 1t61A 164 :CLEEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20200 # 1wurA.117.83 read from T0287.t04.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 117 :I 1wurA 84 :V T0287 119 :GIFLPFF 1wurA 86 :GAVFPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20202 # 1wdaA.117.584 read from T0287.t04.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 117 :ILGI 1wdaA 578 :KAEA T0287 123 :PFF 1wdaA 584 :PNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=20204 # 2bjqA.117.227 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)G119 (2bjqA)G230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 2bjqA 228 :VF T0287 120 :IF 2bjqA 231 :RA T0287 123 :PFF 2bjqA 234 :PDS Number of specific fragments extracted= 3 number of extra gaps= 2 total=20207 # 2be1A.117.232 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFF 2be1A 347 :VSPTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20208 # 1t62A.117.69 read from T0287.t04.many.frag # found chain 1t62A in template set T0287 117 :ILGIFLPFF 1t62A 1070 :QYDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20209 # 1xruA.117.48 read from T0287.t04.many.frag # found chain 1xruA in template set T0287 117 :ILGIFLPFF 1xruA 46 :IVGGIMPIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20210 # 1lm8V.117.30 read from T0287.t04.many.frag # found chain 1lm8V in template set T0287 117 :ILGIFLPFF 1lm8V 84 :VLPVWLNFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20211 # 2bzvA.117.68 read from T0287.t04.many.frag # found chain 2bzvA in template set T0287 117 :ILGIFLPFF 2bzvA 283 :ALSLKLPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20212 # 1f8eA.117.323 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)G408 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1f8eA 406 :YS T0287 120 :IFLPFF 1f8eA 409 :SFMDYW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20214 # 1ttwA.117.35 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 T0287 117 :ILGIFLP 1ttwA 36 :WVVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20215 # 1h2wA.118.325 read from T0287.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)L122 (1h2wA)V330 because D (zeta) conformation "forbidden" or filtered. T0287 118 :LGIF 1h2wA 326 :WKVL T0287 123 :PFFS 1h2wA 331 :PEHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20217 # 1w66A.118.132 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1w66A 131 :SGVWLPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20218 # 1seiA.118.58 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 T0287 118 :L 1seiA 59 :L T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 3 number of extra gaps= 3 total=20221 # 1ogoX.118.146 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 118 :LGIFLPFFS 1ogoX 147 :IVIRVPADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20222 # 3eipA.118.54 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 118 :LGIFLPFFS 3eipA 55 :VPLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20223 # 1as4B.118.13 read from T0287.t04.many.frag # found chain 1as4B in template set T0287 118 :LGIFLPFFS 1as4B 371 :LMIIVPTDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20224 # 1crzA.118.230 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIFL 1crzA 237 :LAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20225 # 1t1uA.118.168 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=20227 # 1kaeA.118.126 read from T0287.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LGIFLPF 1kaeA 127 :VGLYIPG T0287 126 :S 1kaeA 135 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=20229 # 1cv8.118.136 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 118 :L 1cv8 137 :I T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 3 number of extra gaps= 2 total=20232 # 1jo0A.118.81 read from T0287.t04.many.frag # found chain 1jo0A in training set T0287 118 :LGIFLPFFS 1jo0A 83 :LVLYRPSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20233 # 1qw9A.118.23 read from T0287.t04.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 Warning: unaligning (T0287)S126 (1qw9A)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LG 1qw9A 24 :YG T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20236 # 1g9gA.118.107 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :L 1g9gA 108 :P T0287 120 :IFLPFFS 1g9gA 110 :TYAPEFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20238 # 3cla.118.138 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 118 :L 3cla 145 :L T0287 120 :IFL 3cla 147 :ISA T0287 124 :FFS 3cla 151 :PWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=20241 # 1chd.118.129 read from T0287.t04.many.frag # found chain 1chd in training set T0287 118 :LGIFLPFFS 1chd 276 :VGVILTGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20242 # 2be1A.118.133 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 Warning: unaligning (T0287)S126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2be1A)K252 T0287 118 :LGIF 2be1A 244 :ISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20243 # 1t4bA.118.222 read from T0287.t04.many.frag # found chain 1t4bA in training set T0287 118 :LGIFLPFFS 1t4bA 223 :AGSLIPWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=20244 # 1f8eA.118.75 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIF 1f8eA 158 :LIS T0287 123 :PF 1f8eA 162 :PL T0287 126 :S 1f8eA 165 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=20247 # 1t61A.118.160 read from T0287.t04.many.frag # found chain 1t61A in training set T0287 118 :LGIFLPFFS 1t61A 161 :PGSCLEEFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20248 # 1t62A.118.70 read from T0287.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)G119 (1t62A)D1072 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t62A 1071 :Y T0287 120 :IFLPFFS 1t62A 1073 :IILDGQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20250 # 1y8xB.118.78 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIF 1y8xB 423 :LAVA T0287 123 :PFFS 1y8xB 428 :VTTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20252 # 1lm8V.118.31 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S126 (1lm8V)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1lm8V 85 :LPVWLNFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20253 # 1flmA.118.15 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)S126 (1flmA)D24 because G (3-10) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1flmA 16 :VAIATQGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20254 # 1sz2A.118.114 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 T0287 118 :LGIFLPFF 1sz2A 104 :VSMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=20255 # 1sqwA.118.85 read from T0287.t04.many.frag # found chain 1sqwA in template set T0287 118 :LGIFLPFFS 1sqwA 86 :LDYLAPYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20256 # 1ttwA.118.36 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)G119 (1ttwA)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 T0287 118 :L 1ttwA 37 :V T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=20258 # 2be1A.118.233 read from T0287.t04.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFFS 2be1A 347 :VSPTFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20259 # 2fhpA.118.35 read from T0287.t04.many.frag # found chain 2fhpA in template set T0287 118 :LGIFLPFFS 2fhpA 33 :FNMIGPYFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20260 # 1repC.118.135 read from T0287.t04.many.frag # found chain 1repC in template set T0287 118 :LGIFLPFFS 1repC 136 :IPFFIGLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20261 # 2asbA.118.26 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 118 :LGIFL 2asbA 131 :VVVRI T0287 124 :FFS 2asbA 137 :TET Number of specific fragments extracted= 2 number of extra gaps= 1 total=20263 # 1h2wA.119.326 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 119 :GIFLPFFSK 1h2wA 327 :KVLVPEHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20264 # 1w66A.119.133 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1w66A 132 :GVWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=20266 # 1ogoX.119.147 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ogoX 149 :IRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20267 # 1crzA.119.231 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 120 :IFL 1crzA 239 :FAL T0287 126 :SK 1crzA 245 :GS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20269 # 3eipA.119.55 read from T0287.t04.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)K127 (3eipA)H64 because P (beta_P) conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 3eipA 56 :PLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20270 # 1seiA.119.59 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 119 :GIFL 1seiA 60 :RIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20272 # 1as4B.119.14 read from T0287.t04.many.frag # found chain 1as4B in template set T0287 119 :GIFLPFFSK 1as4B 372 :MIIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20273 # 1t1uA.119.169 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 1 number of extra gaps= 2 total=20274 # 1cv8.119.137 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFL 1cv8 138 :IIWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20276 # 1y8xB.119.79 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)G119 (1y8xB)A424 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1y8xB 425 :VADVTTPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=20277 # 1kaeA.119.127 read from T0287.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPF 1kaeA 128 :GLYIPG T0287 126 :SK 1kaeA 135 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20279 # 1flmA.119.16 read from T0287.t04.many.frag # found chain 1flmA in training set T0287 119 :GIFLPFFSK 1flmA 17 :AIATQGEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20280 # 1f8eA.119.76 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1f8eA)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 119 :GIF 1f8eA 158 :LIS T0287 123 :PF 1f8eA 162 :PL T0287 126 :S 1f8eA 165 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=20283 # 1jo0A.119.82 read from T0287.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1jo0A)E91 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1jo0A 85 :LYRPSE T0287 127 :K 1jo0A 92 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=20285 # 2asbA.119.27 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIFL 2asbA 132 :VVRI T0287 124 :F 2asbA 137 :T T0287 126 :SK 2asbA 139 :TK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20288 # 1t62A.119.71 read from T0287.t04.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)G119 (1t62A)D1072 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1t62A 1073 :IILDGQSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=20289 # 1sz2A.119.115 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 119 :GIFLPFF 1sz2A 105 :SMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=20290 # 1ttwA.119.37 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 T0287 119 :GIFLP 1ttwA 38 :VHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20291 # 1lm8V.119.32 read from T0287.t04.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1lm8V 87 :VWLNFDGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20292 # 1mpxA.119.461 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 119 :GIFLPFFSK 1mpxA 484 :TFVTEPLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20293 # 1hynP.119.230 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1hynP 231 :VGRADFLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20294 # 1g9gA.119.108 read from T0287.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1g9gA 110 :TYAPEFQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20295 # 1chd.119.130 read from T0287.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S126 (1chd)G284 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1chd 277 :GVILTGM T0287 127 :K 1chd 285 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=20297 # 2bzvA.119.70 read from T0287.t04.many.frag # found chain 2bzvA in template set T0287 119 :GIFLPFFSK 2bzvA 285 :SLKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20298 # 1qg3A.119.19 read from T0287.t04.many.frag # found chain 1qg3A in template set Warning: unaligning (T0287)S126 (1qg3A)G1152 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1qg3A 1145 :FNWLPPS T0287 127 :K 1qg3A 1153 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20300 # 1io0A.119.124 read from T0287.t04.many.frag # found chain 1io0A in training set Warning: unaligning (T0287)F124 (1io0A)N289 because L (left) conformation "forbidden" or filtered. T0287 119 :GIFLP 1io0A 284 :ELRID T0287 125 :FSK 1io0A 290 :QSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20302 # 3cla.119.139 read from T0287.t04.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 119 :GIFL 3cla 146 :NISA T0287 124 :FFSK 3cla 151 :PWVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20304 # 2bjqA.119.33 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIFL 2bjqA 34 :VALW T0287 124 :FF 2bjqA 39 :KF T0287 127 :K 2bjqA 42 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=20307 # 1oltA.119.55 read from T0287.t04.many.frag # found chain 1oltA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)K64 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)K64 T0287 119 :GIFLPFF 1oltA 56 :YVHIPFC Number of specific fragments extracted= 1 number of extra gaps= 1 total=20308 # 1t61A.119.161 read from T0287.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. T0287 119 :G 1t61A 162 :G T0287 121 :FLPFFSK 1t61A 164 :CLEEFRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20310 # 1h2wA.120.327 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 120 :IFLPFFSKP 1h2wA 328 :VLVPEHEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20311 # 1ttwA.120.38 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20312 # 1crzA.120.232 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)S246 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1crzA 239 :FAL T0287 128 :P 1crzA 247 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20314 # 1flmA.120.17 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1flmA 18 :IATQGED T0287 128 :P 1flmA 26 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20316 # 1mpxA.120.462 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 120 :IFLPFFSKP 1mpxA 485 :FVTEPLTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20317 # 1w66A.120.134 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1w66A 133 :VWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=20319 # 2asbA.120.28 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IF 2asbA 133 :VR T0287 124 :F 2asbA 137 :T T0287 126 :SKP 2asbA 139 :TKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=20322 # 3eipA.120.56 read from T0287.t04.many.frag # found chain 3eipA in training set Warning: unaligning (T0287)F124 (3eipA)Y61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (3eipA)H64 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLP 3eipA 57 :LLQP T0287 125 :FS 3eipA 62 :FN T0287 128 :P 3eipA 65 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=20325 # 1ogoX.120.148 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 120 :IFLPFFSKP 1ogoX 149 :IRVPADANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20326 # 1t1uA.120.170 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH T0287 128 :P 1t1uA 180 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=20328 # 1y8xB.120.80 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IF 1y8xB 425 :VA T0287 123 :PFFS 1y8xB 428 :VTTP T0287 128 :P 1y8xB 433 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=20331 # 1as4B.120.15 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1as4B 373 :IIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=20332 # 1sz2A.120.116 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 120 :IFLPFF 1sz2A 106 :MAIPML T0287 128 :P 1sz2A 114 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=20334 # 1seiA.120.60 read from T0287.t04.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG T0287 128 :P 1seiA 69 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=20337 # 2bjqA.120.34 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :FFSKP 2bjqA 39 :KFGKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20339 # 1hynP.120.231 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1hynP 232 :GRADFLE T0287 128 :P 1hynP 240 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20341 # 1f8eA.120.77 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PFFSKP 1f8eA 162 :PLSSPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20343 # 1kaeA.120.128 read from T0287.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. T0287 120 :IFLPF 1kaeA 129 :LYIPG T0287 126 :SKP 1kaeA 135 :SAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20345 # 1cv8.120.138 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)S126 (1cv8)N145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=20347 # 1te0A.120.296 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 T0287 120 :IF 1te0A 333 :VV T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=20350 # 1t62A.120.72 read from T0287.t04.many.frag # found chain 1t62A in template set T0287 120 :IFLPFFSKP 1t62A 1073 :IILDGQSQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20351 # 1r5mA.120.142 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)I120 (1r5mA)N255 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1r5mA 256 :VL T0287 124 :FFSKP 1r5mA 259 :FHRAP Number of specific fragments extracted= 2 number of extra gaps= 2 total=20353 # 1ut7A.120.63 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1ut7A 61 :NKALFGEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20354 # 1wnaA.120.47 read from T0287.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1wnaA 48 :LLLHTGKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20355 # 1jo0A.120.83 read from T0287.t04.many.frag # found chain 1jo0A in training set T0287 120 :IFLPFFSKP 1jo0A 85 :LYRPSEEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20356 # 1t61A.120.162 read from T0287.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)P128 (1t61A)A171 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1t61A 163 :SCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20357 # 1l1dA.120.48 read from T0287.t04.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)K127 (1l1dA)G426 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1l1dA 419 :IYVDVVS T0287 128 :P 1l1dA 427 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=20359 # 1lm8V.120.33 read from T0287.t04.many.frag # found chain 1lm8V in template set T0287 120 :IFLPFFSKP 1lm8V 87 :VWLNFDGEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20360 # 2bzvA.120.71 read from T0287.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)P128 (2bzvA)G294 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 2bzvA 286 :LKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=20361 # 3bamA.120.94 read from T0287.t04.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 3bamA 95 :VYK T0287 124 :FFSK 3bamA 99 :FIEN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20363 # 1ttwA.121.39 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 121 :FLP 1ttwA 40 :LAP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20365 # 1flmA.121.18 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1flmA 19 :ATQGED T0287 128 :PI 1flmA 26 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20367 # 1h2wA.121.328 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 121 :FLPFFSKPI 1h2wA 329 :LVPEHEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20368 # 2bjqA.121.35 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2bjqA 36 :LW T0287 124 :FFSKPI 2bjqA 39 :KFGKPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20370 # 1hynP.121.232 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLP 1hynP 233 :RAD T0287 125 :FS 1hynP 237 :LE T0287 128 :PI 1hynP 240 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=20373 # 1mpxA.121.463 read from T0287.t04.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)S126 (1mpxA)T491 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FLPFF 1mpxA 486 :VTEPL T0287 127 :KPI 1mpxA 492 :EPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20375 # 1y8xB.121.81 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 1y8xB 426 :A T0287 123 :PFFSKPI 1y8xB 428 :VTTPQTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20377 # 2asbA.121.29 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2asbA)S142 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FL 2asbA 134 :RI T0287 124 :FFSKP 2asbA 137 :TETKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20379 # 1crzA.121.233 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 240 :AL T0287 127 :KPI 1crzA 246 :SLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20381 # 1dkiA.121.193 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 121 :FLPFFSKPI 1dkiA 76 :NNPYFNHPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20382 # 1te0A.121.297 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 T0287 121 :F 1te0A 334 :V T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=20385 # 1ut7A.121.64 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1ut7A 62 :KALFGEK T0287 129 :I 1ut7A 70 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=20387 # 1t1uA.121.171 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 121 :FLPFF 1t1uA 173 :RLPGH T0287 128 :PI 1t1uA 180 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20389 # 1sz2A.121.117 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 121 :FLPFF 1sz2A 107 :AIPML T0287 128 :PI 1sz2A 114 :EH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20391 # 3eipA.121.57 read from T0287.t04.many.frag # found chain 3eipA in training set T0287 121 :FLPFFSKPI 3eipA 58 :LQPYFNHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20392 # 1f8eA.121.78 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1f8eA)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :F 1f8eA 160 :S T0287 123 :PF 1f8eA 162 :PL T0287 126 :S 1f8eA 165 :S T0287 128 :PI 1f8eA 167 :PT Number of specific fragments extracted= 4 number of extra gaps= 3 total=20396 # 1oh0A.121.88 read from T0287.t04.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 121 :F 1oh0A 89 :E T0287 124 :FF 1oh0A 92 :WN T0287 127 :KPI 1oh0A 95 :QPC Number of specific fragments extracted= 3 number of extra gaps= 2 total=20399 # 1ogoX.121.149 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)K127 (1ogoX)N156 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FLPFFS 1ogoX 150 :RVPADA T0287 128 :PI 1ogoX 157 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20401 # 1w0pA.121.419 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 121 :FLPFFSKPI 1w0pA 420 :NLNGVSAPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20402 # 1r5mA.121.143 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1r5mA 256 :VL T0287 124 :FFSKPI 1r5mA 259 :FHRAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20404 # 1w66A.121.135 read from T0287.t04.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1w66A)A140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFF 1w66A 134 :WLPGR T0287 129 :I 1w66A 142 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20406 # 1crzA.121.277 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 284 :TS T0287 124 :FFS 1crzA 287 :QAG T0287 128 :PI 1crzA 291 :PQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=20409 # 1nwzA.121.94 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FL 1nwzA 95 :TF T0287 124 :FF 1nwzA 98 :YQ T0287 127 :KPI 1nwzA 101 :TPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=20412 # 1as4B.121.16 read from T0287.t04.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1as4B 374 :IVPTDTQ T0287 129 :I 1as4B 382 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=20414 # 1quqB.121.16 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FL 1quqB 17 :LA T0287 124 :FFSKPI 1quqB 20 :FIDKPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20416 # 1cv8.121.139 read from T0287.t04.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1cv8 140 :WN T0287 125 :FS 1cv8 144 :DN T0287 129 :I 1cv8 148 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=20419 # 1wnaA.121.48 read from T0287.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1wnaA 49 :LLHTGKK T0287 129 :I 1wnaA 57 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20421 # 2fbeA.121.56 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2fbeA 57 :TP T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :I 2fbeA 65 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=20424 # 2axwA.121.82 read from T0287.t04.many.frag # found chain 2axwA in template set Warning: unaligning (T0287)P128 (2axwA)Q90 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 2axwA 83 :SRPGQEE T0287 129 :I 2axwA 91 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20426 # 3bamA.121.95 read from T0287.t04.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 3bamA 96 :YK T0287 124 :FFSK 3bamA 99 :FIEN T0287 129 :I 3bamA 104 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=20429 # 2bjqA.122.36 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2bjqA 37 :W T0287 124 :FFSKPIM 2bjqA 39 :KFGKPIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20431 # 1flmA.122.19 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :LPFFS 1flmA 20 :TQGED T0287 128 :PIM 1flmA 26 :PHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20433 # 1hynP.122.233 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :LPFFS 1hynP 234 :ADFLE T0287 128 :PIM 1hynP 240 :PVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20435 # 1ttwA.122.40 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 T0287 122 :LP 1ttwA 41 :AP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=20437 # 1y8xB.122.82 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1y8xB 428 :VTTPQTVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20438 # 1mpxA.122.464 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 122 :LPFFSKPIM 1mpxA 487 :TEPLTEPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20439 # 1dkiA.122.194 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)K127 (1dkiA)H82 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFS 1dkiA 77 :NPYFN T0287 128 :PIM 1dkiA 83 :PKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20441 # 1h2wA.122.329 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 122 :LPFFSKPIM 1h2wA 330 :VPEHEKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20442 # 1te0A.122.298 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 1 number of extra gaps= 2 total=20443 # 2asbA.122.30 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIM 2asbA 139 :TKASE Number of specific fragments extracted= 2 number of extra gaps= 2 total=20445 # 1quqB.122.17 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 1quqB 18 :A T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIM 1quqB 23 :KPVC Number of specific fragments extracted= 3 number of extra gaps= 2 total=20448 # 1crzA.122.234 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 122 :L 1crzA 241 :L T0287 126 :SKPIM 1crzA 245 :GSLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20450 # 1crzA.122.278 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. T0287 122 :L 1crzA 285 :S T0287 124 :FF 1crzA 287 :QA T0287 127 :KPIM 1crzA 290 :RPQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=20453 # 1w0pA.122.420 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 122 :LPFFSKPIM 1w0pA 421 :LNGVSAPII Number of specific fragments extracted= 1 number of extra gaps= 0 total=20454 # 1nwzA.122.95 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. T0287 122 :L 1nwzA 96 :F T0287 124 :F 1nwzA 98 :Y T0287 126 :SKPIM 1nwzA 100 :MTPTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20457 # 1ut7A.122.65 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F124 (1ut7A)F65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LP 1ut7A 63 :AL T0287 125 :FSK 1ut7A 66 :GEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 3 number of extra gaps= 2 total=20460 # 1oh0A.122.89 read from T0287.t04.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 127 :KPIM 1oh0A 95 :QPCA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20462 # 1amx.122.59 read from T0287.t04.many.frag # found chain 1amx in template set Warning: unaligning (T0287)L122 (1amx)K198 because L (left) conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1amx 199 :SYVSKDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20463 # 2bsfA.122.86 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFSK 2bsfA 237 :LTVTSN T0287 129 :IM 2bsfA 244 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20465 # 2fbeA.122.57 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2fbeA 58 :P T0287 124 :FFS 2fbeA 60 :FTS T0287 129 :IM 2fbeA 65 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=20468 # 1sz2A.122.118 read from T0287.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 122 :LPFF 1sz2A 108 :IPML T0287 128 :PIM 1sz2A 114 :EHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20470 # 1j0pA.122.11 read from T0287.t04.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 122 :L 1j0pA 11 :M T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIM 1j0pA 17 :PVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=20473 # 1b12A.122.36 read from T0287.t04.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 122 :L 1b12A 112 :D T0287 128 :PIM 1b12A 118 :TLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20475 # 1r5mA.122.144 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 1r5mA 257 :L T0287 124 :FFSKPIM 1r5mA 259 :FHRAPIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20477 # 2a25A.122.137 read from T0287.t04.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2a25A 227 :L T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IM 2a25A 234 :LT Number of specific fragments extracted= 4 number of extra gaps= 3 total=20481 # 4bcl.122.244 read from T0287.t04.many.frag # found chain 4bcl in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (4bcl)Q247 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)Q247 Warning: unaligning (T0287)K127 (4bcl)K250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (4bcl)S253 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :L 4bcl 245 :V T0287 125 :FS 4bcl 248 :LN T0287 128 :PI 4bcl 251 :PA Number of specific fragments extracted= 3 number of extra gaps= 3 total=20484 # 1cczA.122.78 read from T0287.t04.many.frag # found chain 1cczA in training set T0287 122 :LPFFSKPIM 1cczA 79 :SPNITDTMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20485 # 1b7yA.122.257 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 122 :LPFFS 1b7yA 258 :FPFVE T0287 128 :PIM 1b7yA 264 :GAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20487 # 1zsqA.122.46 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 122 :L 1zsqA 116 :S T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIM 1zsqA 122 :PFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=20490 # 1t1uA.122.172 read from T0287.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 122 :LPFF 1t1uA 174 :LPGH T0287 128 :PIM 1t1uA 180 :DTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20492 # 2bjqA.123.37 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 2bjqA 39 :KF T0287 127 :KPIMF 2bjqA 42 :KPIHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20494 # 1flmA.123.20 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFS 1flmA 21 :QGED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20496 # 1hynP.123.234 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFS 1hynP 235 :DFLE T0287 128 :PIMF 1hynP 240 :PVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20498 # 1y8xB.123.83 read from T0287.t04.many.frag # found chain 1y8xB in template set T0287 123 :PFFSKPIMF 1y8xB 428 :VTTPQTVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20499 # 1ttwA.123.41 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 123 :P 1ttwA 42 :P T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=20501 # 1te0A.123.299 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :F 1te0A 344 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20504 # 1dkiA.123.195 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFSK 1dkiA 78 :PYFNH T0287 129 :IMF 1dkiA 84 :KNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20506 # 1quqB.123.18 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIMF 1quqB 23 :KPVCF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20508 # 1h2wA.123.330 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 123 :PFFSKPIMF 1h2wA 331 :PEHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20509 # 1crzA.123.279 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1crzA)A288 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :F 1crzA 287 :Q T0287 128 :PIMF 1crzA 291 :PQVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20511 # 1crzA.123.235 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)S246 because E (beta_S) conformation "forbidden" or filtered. T0287 128 :PIMF 1crzA 247 :LNLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=20512 # 1mpxA.123.465 read from T0287.t04.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)S126 (1mpxA)T491 because G (3-10) conformation "forbidden" or filtered. T0287 123 :PFF 1mpxA 488 :EPL T0287 127 :KPIMF 1mpxA 492 :EPLQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20514 # 2asbA.123.31 read from T0287.t04.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIMF 2asbA 139 :TKASEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20516 # 1nwzA.123.96 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 3 total=20518 # 1w0pA.123.421 read from T0287.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 123 :P 1w0pA 422 :N T0287 125 :FSKPIMF 1w0pA 424 :VSAPIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20520 # 1dg6A.123.123 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)P123 (1dg6A)T214 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1dg6A 215 :SYPAPILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20521 # 1zsqA.123.47 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMF 1zsqA 122 :PFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20523 # 2a25A.123.138 read from T0287.t04.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2a25A)R231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2a25A 229 :GH T0287 127 :K 2a25A 232 :R T0287 129 :IMF 2a25A 234 :LTW Number of specific fragments extracted= 3 number of extra gaps= 3 total=20526 # 2bsfA.123.87 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFFSK 2bsfA 238 :TVTSN T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20528 # 1b7yA.123.258 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFS 1b7yA 259 :PFVE T0287 128 :PIMF 1b7yA 264 :GAQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20530 # 1ut7A.123.66 read from T0287.t04.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)F73 T0287 123 :PFFSK 1ut7A 64 :LFGEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20532 # 1vchA.123.86 read from T0287.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)S126 (1vchA)E90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. T0287 123 :PFF 1vchA 87 :PYM T0287 128 :PIMF 1vchA 92 :PIIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20534 # 1amx.123.60 read from T0287.t04.many.frag # found chain 1amx in template set T0287 123 :PFFSKPIMF 1amx 199 :SYVSKDITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20535 # 1oh0A.123.90 read from T0287.t04.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 127 :KPIMF 1oh0A 95 :QPCAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20537 # 2fbeA.123.58 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 2fbeA 60 :FTS T0287 129 :IMF 2fbeA 65 :HYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=20539 # 1xubA.123.259 read from T0287.t04.many.frag # found chain 1xubA in training set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xubA)R244 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xubA)R244 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1xubA)S246 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1xubA)S246 T0287 123 :PFF 1xubA 240 :VEI T0287 130 :MF 1xubA 247 :LM Number of specific fragments extracted= 2 number of extra gaps= 1 total=20541 # 1j0pA.123.12 read from T0287.t04.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIMF 1j0pA 17 :PVVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20543 # 1b12A.123.37 read from T0287.t04.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 128 :PIMF 1b12A 118 :TLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20544 # 1cczA.123.79 read from T0287.t04.many.frag # found chain 1cczA in training set T0287 123 :PFFSKPIMF 1cczA 80 :PNITDTMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20545 # 2fojA.123.12 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P123 because first residue in template chain is (2fojA)T63 Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMF 2fojA 69 :ATF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20547 # 2bjqA.124.38 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2bjqA)R47 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :F 2bjqA 39 :K T0287 127 :KPIMF 2bjqA 42 :KPIHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20549 # 1y8xB.124.84 read from T0287.t04.many.frag # found chain 1y8xB in template set T0287 124 :FFSKPIMFK 1y8xB 429 :TTPQTVLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20550 # 1hynP.124.235 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1hynP 237 :LE T0287 128 :PIMFK 1hynP 240 :PVLGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20552 # 1ttwA.124.42 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :K 1ttwA 51 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=20554 # 1flmA.124.21 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 T0287 124 :FFSKPIMF 1flmA 22 :GEDGPHLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20555 # 1te0A.124.300 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :FK 1te0A 344 :LQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=20558 # 1quqB.124.19 read from T0287.t04.many.frag # found chain 1quqB in template set T0287 124 :FFSKPIMFK 1quqB 20 :FIDKPVCFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20559 # 1dkiA.124.196 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 124 :FFSKPIMFK 1dkiA 79 :YFNHPKNLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20560 # 1crzA.124.280 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1crzA)V293 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFS 1crzA 287 :QAG T0287 128 :PI 1crzA 291 :PQ T0287 131 :FK 1crzA 294 :YK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20563 # 1crzA.124.236 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMFK 1crzA 245 :GSLNLYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20564 # 1h2wA.124.331 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 124 :FFSKPIMFK 1h2wA 332 :EHEKDVLEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20565 # 1dg6A.124.124 read from T0287.t04.many.frag # found chain 1dg6A in training set T0287 124 :FFSKPIMFK 1dg6A 215 :SYPAPILLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=20566 # 1w0pA.124.422 read from T0287.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)M130 (1w0pA)I429 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFSKPI 1w0pA 423 :GVSAPI T0287 131 :FK 1w0pA 430 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20568 # 2asbA.124.32 read from T0287.t04.many.frag # found chain 2asbA in template set T0287 124 :FFSKPIMFK 2asbA 137 :TETKASEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20569 # 1zsqA.124.48 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMFK 1zsqA 122 :PFVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20571 # 1nwzA.124.97 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1nwzA)K104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 124 :F 1nwzA 98 :Y T0287 126 :SKPI 1nwzA 100 :MTPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20573 # 2bsfA.124.88 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2bsfA 239 :VT T0287 127 :K 2bsfA 242 :N T0287 129 :IMFK 2bsfA 244 :VLLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=20576 # 1gvp.124.37 read from T0287.t04.many.frag # found chain 1gvp in training set T0287 124 :FFSKPIMFK 1gvp 38 :GNEYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20577 # 1b7yA.124.259 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)F124 (1b7yA)F260 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFK 1b7yA 264 :GAQFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20579 # 2a25A.124.139 read from T0287.t04.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2a25A 229 :GHRR T0287 129 :IMFK 2a25A 234 :LTWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20581 # 1amx.124.61 read from T0287.t04.many.frag # found chain 1amx in template set T0287 124 :FFSKPIMFK 1amx 200 :YVSKDITIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20582 # 1vchA.124.87 read from T0287.t04.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)F124 (1vchA)Y88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1vchA)E96 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FS 1vchA 89 :ME T0287 128 :PIMF 1vchA 92 :PIIQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=20584 # 1gnyA.124.100 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFS 1gnyA 191 :TAD T0287 128 :PIMFK 1gnyA 195 :DLTLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20586 # 2fojA.124.13 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMFK 2fojA 69 :ATFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20588 # 1mpxA.124.466 read from T0287.t04.many.frag # found chain 1mpxA in template set T0287 124 :FFSKPIMFK 1mpxA 489 :PLTEPLQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20589 # 1uh4A.124.584 read from T0287.t04.many.frag # found chain 1uh4A in template set T0287 124 :FFSKPIMFK 1uh4A 585 :NDSVSHTVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20590 # 2fbeA.124.59 read from T0287.t04.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)S126 (2fbeA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2fbeA 60 :FT T0287 129 :IMFK 2fbeA 65 :HYWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20592 # 1wnaA.124.51 read from T0287.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 1wnaA 52 :TGKK T0287 129 :IMFK 1wnaA 57 :LLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20594 # 1y1oA.124.70 read from T0287.t04.many.frag # found chain 1y1oA in template set T0287 124 :FFSKPIMFK 1y1oA 68 :KRSAAVITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20595 # 1l6pA.124.75 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 1l6pA 76 :IYRD T0287 129 :IMFK 1l6pA 81 :LTLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20597 # 1quqB.125.20 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1quqB 21 :IDKPVCFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20598 # 1dkiA.125.197 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)K127 (1dkiA)H82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1dkiA)F87 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FS 1dkiA 80 :FN T0287 128 :PIMF 1dkiA 83 :PKNL T0287 133 :M 1dkiA 88 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=20601 # 1y8xB.125.85 read from T0287.t04.many.frag # found chain 1y8xB in template set T0287 125 :FSKPIMFKM 1y8xB 430 :TPQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20602 # 2bjqA.125.39 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 2bjqA 40 :F T0287 127 :KPIMFKM 2bjqA 42 :KPIHGRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20604 # 1te0A.125.301 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)K132 (1te0A)Q345 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :F 1te0A 338 :D T0287 127 :K 1te0A 340 :K T0287 131 :F 1te0A 344 :L T0287 133 :M 1te0A 346 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=20608 # 1hynP.125.236 read from T0287.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1hynP 237 :LE T0287 128 :PIMFKM 1hynP 240 :PVLGFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20610 # 1flmA.125.22 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 125 :FSKPIMF 1flmA 23 :EDGPHLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20611 # 1ttwA.125.43 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :M 1ttwA 52 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=20613 # 1crzA.125.281 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FS 1crzA 288 :AG T0287 128 :PIMFKM 1crzA 291 :PQVYKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20615 # 1crzA.125.237 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKM 1crzA 246 :SLNLYVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=20616 # 1dg6A.125.125 read from T0287.t04.many.frag # found chain 1dg6A in training set T0287 125 :FSKPIMFKM 1dg6A 216 :YPAPILLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20617 # 1gnyA.125.101 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 125 :FSKPIMFKM 1gnyA 192 :ADTDLTLTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20618 # 1w0pA.125.423 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 125 :FSKPIMFKM 1w0pA 424 :VSAPIILQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20619 # 1zsqA.125.49 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 125 :F 1zsqA 119 :R T0287 128 :PIMFKM 1zsqA 122 :PFVLDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20621 # 1gvp.125.38 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)K132 (1gvp)K46 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 T0287 125 :FSKPIMF 1gvp 39 :NEYPVLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20622 # 2asbA.125.33 read from T0287.t04.many.frag # found chain 2asbA in template set T0287 125 :FSKPIMFKM 2asbA 138 :ETKASEGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20623 # 1nwzA.125.98 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 128 :PIM 1nwzA 102 :PTK T0287 133 :M 1nwzA 107 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=20625 # 1h2wA.125.332 read from T0287.t04.many.frag # found chain 1h2wA in training set T0287 125 :FSKPIMFKM 1h2wA 333 :HEKDVLEWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20626 # 1ikoP.125.77 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1ikoP 107 :PD T0287 128 :PIMFKM 1ikoP 110 :DVKFTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20628 # 1b7yA.125.260 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFKM 1b7yA 264 :GAQFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20630 # 1ddlA.125.123 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ddlA)S124 T0287 126 :SKPIMFKM 1ddlA 125 :VKPIDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20631 # 1pgl2.125.290 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 1pgl2 291 :IQE T0287 129 :IMFKM 1pgl2 295 :VVLKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20633 # 2awgA.125.9 read from T0287.t04.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)S126 (2awgA)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 2awgA 97 :L T0287 127 :K 2awgA 99 :N T0287 129 :IMFKM 2awgA 101 :LLRKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20636 # 2bsfA.125.89 read from T0287.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 2bsfA 240 :TSN T0287 129 :IMFKM 2bsfA 244 :VLLTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20638 # 1vcaA.125.104 read from T0287.t04.many.frag # found chain 1vcaA in training set T0287 125 :FSKPIMFKM 1vcaA 105 :AGKPITVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20639 # 1v05A.125.20 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKP 1v05A 2650 :VGQK T0287 132 :KM 1v05A 2657 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20641 # 2fojA.125.14 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2fojA)Q72 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :FSK 2fojA 65 :WRS T0287 129 :IMF 2fojA 69 :ATF T0287 133 :M 2fojA 73 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=20644 # 1uh4A.125.585 read from T0287.t04.many.frag # found chain 1uh4A in template set T0287 125 :FSKPIMFKM 1uh4A 586 :DSVSHTVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20645 # 1l6pA.125.76 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSK 1l6pA 77 :YRD T0287 129 :IMFKM 1l6pA 81 :LTLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20647 # 2bbdA.125.126 read from T0287.t04.many.frag # found chain 2bbdA in template set Warning: unaligning (T0287)P128 (2bbdA)N131 because L (left) conformation "forbidden" or filtered. T0287 125 :FSK 2bbdA 128 :MVQ T0287 129 :IMFKM 2bbdA 132 :IILSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20649 # 1te0A.126.302 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20651 # 1dkiA.126.198 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 126 :SKPIMFKMS 1dkiA 81 :NHPKNLFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20652 # 2bjqA.126.40 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (2bjqA)H45 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 2bjqA 42 :KPI T0287 131 :FKMS 2bjqA 46 :GRAW Number of specific fragments extracted= 2 number of extra gaps= 2 total=20654 # 1quqB.126.21 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SKPIMFK 1quqB 22 :DKPVCFV T0287 134 :S 1quqB 30 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=20656 # 1y8xB.126.86 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 T0287 126 :SKPIMFKM 1y8xB 431 :PQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20657 # 1gnyA.126.102 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 126 :SKPIMFKMS 1gnyA 193 :DTDLTLTCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20658 # 1flmA.126.23 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 126 :S 1flmA 24 :D T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :S 1flmA 32 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=20661 # 1dg6A.126.126 read from T0287.t04.many.frag # found chain 1dg6A in training set T0287 126 :SKPIMFKMS 1dg6A 217 :PAPILLMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20662 # 1crzA.126.282 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 126 :SKPIMFKMS 1crzA 289 :GRPQVYKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20663 # 1hynP.126.237 read from T0287.t04.many.frag # found chain 1hynP in template set T0287 126 :SKPIMFKMS 1hynP 238 :EQPVLGFVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20664 # 1crzA.126.238 read from T0287.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1crzA)L249 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 1crzA 246 :SLN T0287 131 :FKMS 1crzA 250 :YVMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=20666 # 1ttwA.126.44 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :MS 1ttwA 52 :MR Number of specific fragments extracted= 2 number of extra gaps= 2 total=20668 # 1pgl2.126.291 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)K127 (1pgl2)E293 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :S 1pgl2 292 :Q T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20670 # 1gvp.126.39 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 126 :SKPIMFK 1gvp 40 :EYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20671 # 1ikoP.126.78 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SKPI 1ikoP 108 :DQDV T0287 131 :FKMS 1ikoP 113 :FTIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20673 # 1v05A.126.21 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)S126 (1v05A)G2651 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKMS 1v05A 2656 :FTVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=20675 # 1b7yA.126.261 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 126 :S 1b7yA 262 :E T0287 128 :PIMFKMS 1b7yA 264 :GAQFAVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20677 # 1l6pA.126.77 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 1l6pA 78 :RD T0287 129 :IMFKMS 1l6pA 81 :LTLPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20679 # 1ddlA.126.124 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ddlA)A132 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1ddlA 125 :VKPIDV T0287 134 :S 1ddlA 133 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=20681 # 1zsqA.126.50 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMS 1zsqA 122 :PFVLDAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20682 # 1wmxA.126.130 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 126 :S 1wmxA 131 :T T0287 129 :IM 1wmxA 134 :QH T0287 133 :MS 1wmxA 138 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=20685 # 1ogoX.126.154 read from T0287.t04.many.frag # found chain 1ogoX in training set T0287 126 :SKPIMFKMS 1ogoX 155 :ANGRKFSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20686 # 2fojA.126.15 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2fojA)T74 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :SK 2fojA 66 :RS T0287 129 :IMFKM 2fojA 69 :ATFQF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20688 # 1vcaA.126.105 read from T0287.t04.many.frag # found chain 1vcaA in training set T0287 126 :SKPIMFKMS 1vcaA 106 :GKPITVKCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20689 # 2awgA.126.10 read from T0287.t04.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)S126 (2awgA)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :K 2awgA 99 :N T0287 129 :IMFKMS 2awgA 101 :LLRKKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20691 # 1w0pA.126.424 read from T0287.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 1w0pA 425 :S T0287 128 :PIMFKMS 1w0pA 427 :PIILQSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20693 # 2d9rA.126.18 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MS 2d9rA 26 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20695 # 1mspA.126.64 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1mspA 65 :KE T0287 129 :IMFKMS 1mspA 68 :VLMAVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20697 # 1mwpA.126.61 read from T0287.t04.many.frag # found chain 1mwpA in training set T0287 126 :SKPIMFKMS 1mwpA 89 :NQPVTIQNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20698 # 1nwzA.126.99 read from T0287.t04.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 126 :SKPIM 1nwzA 100 :MTPTK T0287 133 :MS 1nwzA 107 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20700 # 1te0A.127.303 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20702 # 1quqB.127.22 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KP 1quqB 23 :KP T0287 130 :MFKMSI 1quqB 26 :CFVGRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20704 # 1gnyA.127.103 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1gnyA 195 :DLTLTCTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20705 # 1dkiA.127.199 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 127 :K 1dkiA 82 :H T0287 129 :IMFKMSI 1dkiA 84 :KNLFAAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20707 # 2bjqA.127.41 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (2bjqA)R47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 T0287 128 :PIMF 2bjqA 43 :PIHG T0287 133 :MS 2bjqA 48 :AW Number of specific fragments extracted= 2 number of extra gaps= 3 total=20709 # 1y8xB.127.87 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 127 :KPIMFKM 1y8xB 432 :QTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20710 # 1dg6A.127.127 read from T0287.t04.many.frag # found chain 1dg6A in training set T0287 127 :KPIMFKMSI 1dg6A 218 :APILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20711 # 1pgl2.127.292 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 127 :K 1pgl2 293 :E T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20713 # 1wmxA.127.131 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 Warning: unaligning (T0287)S134 (1wmxA)P139 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IM 1wmxA 134 :QH T0287 133 :M 1wmxA 138 :I T0287 135 :I 1wmxA 140 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20716 # 1l6pA.127.78 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 1l6pA 79 :D T0287 129 :IMFKMSI 1l6pA 81 :LTLPVTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20718 # 1flmA.127.24 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 127 :KPIMF 1flmA 25 :GPHLV T0287 134 :SI 1flmA 32 :WN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20720 # 1ddlA.127.125 read from T0287.t04.many.frag # found chain 1ddlA in template set T0287 127 :KPIMFKMSI 1ddlA 126 :KPIDVEANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20721 # 1gvp.127.40 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 127 :KPIMFK 1gvp 41 :YPVLVK T0287 135 :I 1gvp 49 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20723 # 1crzA.127.283 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 290 :RPQVYKVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20724 # 1ikoP.127.79 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPI 1ikoP 109 :QDV T0287 131 :FKMSI 1ikoP 113 :FTIKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20726 # 1v05A.127.22 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)K132 (1v05A)T2657 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :KP 1v05A 2652 :QK T0287 131 :F 1v05A 2656 :F T0287 133 :MSI 1v05A 2658 :VDC Number of specific fragments extracted= 3 number of extra gaps= 2 total=20729 # 2d9rA.127.19 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSI 2d9rA 26 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20731 # 1b7yA.127.262 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :P 1b7yA 264 :G T0287 130 :MFKMSI 1b7yA 266 :QFAVWW Number of specific fragments extracted= 2 number of extra gaps= 2 total=20733 # 1ogoX.127.155 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)K127 (1ogoX)N156 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1ogoX 158 :RKFSVEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20734 # 1zsqA.127.51 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMSI 1zsqA 122 :PFVLDASL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20735 # 1qexA.127.155 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMFK 1qexA 156 :STSVWN T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20737 # 2fojA.127.16 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 2fojA 67 :S T0287 129 :IMFKMSI 2fojA 69 :ATFQFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20739 # 1ttwA.127.45 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ttwA)A54 because G (3-10) conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :MS 1ttwA 52 :MR Number of specific fragments extracted= 2 number of extra gaps= 3 total=20741 # 1mspA.127.65 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMFKMSI 1mspA 68 :VLMAVSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=20743 # 1crzA.127.239 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 246 :SLNLYVMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20744 # 1mwpA.127.62 read from T0287.t04.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)S134 (1mwpA)W97 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPIMFKM 1mwpA 90 :QPVTIQN T0287 135 :I 1mwpA 98 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=20746 # 1w0pA.127.425 read from T0287.t04.many.frag # found chain 1w0pA in training set T0287 127 :KPIMFKMSI 1w0pA 426 :APIILQSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=20747 # 1vcaA.127.106 read from T0287.t04.many.frag # found chain 1vcaA in training set T0287 127 :KPIMFKMSI 1vcaA 107 :KPITVKCSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20748 # 2awgA.127.11 read from T0287.t04.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :K 2awgA 99 :N T0287 129 :IMFKMSI 2awgA 101 :LLRKKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20750 # 1iq4A.127.123 read from T0287.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0287)P128 (1iq4A)R125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1iq4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :K 1iq4A 124 :G T0287 130 :MFKMSI 1iq4A 127 :NYTLGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20752 # 1te0A.128.304 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=20753 # 1gnyA.128.104 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 128 :PIMFKMSIR 1gnyA 195 :DLTLTCTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=20754 # 1quqB.128.23 read from T0287.t04.many.frag # found chain 1quqB in template set T0287 128 :PIMFKMSIR 1quqB 24 :PVCFVGRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20755 # 1pgl2.128.293 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1pgl2 295 :VVLKFSQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20756 # 1dkiA.128.200 read from T0287.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1dkiA 84 :KNLFAAIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20757 # 1l6pA.128.79 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1l6pA 81 :LTLPVTIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20758 # 1dg6A.128.128 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)M130 (1dg6A)L221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 T0287 128 :PI 1dg6A 219 :PI T0287 131 :FKMSI 1dg6A 222 :LMKSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20760 # 1ddlA.128.126 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1ddlA)T135 because G (3-10) conformation "forbidden" or filtered. T0287 128 :PIMF 1ddlA 127 :PIDV T0287 133 :MSI 1ddlA 132 :ANL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20762 # 1y8xB.128.88 read from T0287.t04.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 128 :PIMFKM 1y8xB 433 :TVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20763 # 1gvp.128.41 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M130 (1gvp)L44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)R136 (1gvp)D50 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PI 1gvp 42 :PV T0287 131 :FK 1gvp 45 :VK T0287 135 :I 1gvp 49 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20766 # 1ikoP.128.80 read from T0287.t04.many.frag # found chain 1ikoP in template set T0287 128 :PIMFKMSIR 1ikoP 110 :DVKFTIKFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20767 # 1wmxA.128.132 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIR 1wmxA 138 :IPLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=20769 # 2d9rA.128.20 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSIR 2d9rA 26 :AIIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20771 # 1qexA.128.156 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFK 1qexA 157 :TSVWN T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 2 total=20773 # 2bjqA.128.42 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)K132 (2bjqA)R47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 128 :PIMF 2bjqA 43 :PIHG T0287 133 :M 2bjqA 48 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=20775 # 1flmA.128.25 read from T0287.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SIR 1flmA 32 :WNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20777 # 1v05A.128.23 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)I135 (1v05A)C2660 because G (3-10) conformation "forbidden" or filtered. T0287 128 :P 1v05A 2653 :K T0287 131 :FKMS 1v05A 2656 :FTVD T0287 136 :R 1v05A 2661 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=20780 # 1crzA.128.284 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 128 :PIMFKMSIR 1crzA 291 :PQVYKVNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20781 # 1b7yA.128.263 read from T0287.t04.many.frag # found chain 1b7yA in template set T0287 128 :PIMFKMSIR 1b7yA 264 :GAQFAVWWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20782 # 2fojA.128.17 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2fojA 69 :ATFQFTVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20783 # 1mspA.128.66 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1mspA 68 :VLMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20784 # 2bzgA.128.114 read from T0287.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)P128 (2bzgA)I128 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 2bzgA 129 :SLYCCSIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20785 # 1ttwA.128.46 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ttwA)A54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 133 :MS 1ttwA 52 :MR Number of specific fragments extracted= 2 number of extra gaps= 3 total=20787 # 1zsqA.128.52 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :MSIR 1zsqA 127 :ASLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20789 # 1ogoX.128.156 read from T0287.t04.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1ogoX 158 :RKFSVEFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20790 # 1mwpA.128.63 read from T0287.t04.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M130 (1mwpA)T93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 128 :PI 1mwpA 91 :PV T0287 131 :FK 1mwpA 94 :IQ T0287 134 :SIR 1mwpA 97 :WCK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20793 # 2f15A.128.21 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)P128 (2f15A)E89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20795 # 1uh4A.128.588 read from T0287.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)M133 (1uh4A)V594 because P (beta_P) conformation "forbidden" or filtered. T0287 128 :PIMFK 1uh4A 589 :SHTVN T0287 134 :SIR 1uh4A 595 :PVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20797 # 2cy7A.128.305 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 128 :PIMFKMSIR 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20798 # 1vajA.128.113 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 128 :PIMFKMSIR 1vajA 114 :PELIEGPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20799 # 1te0A.129.305 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :E 1te0A 350 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=20801 # 1pgl2.129.294 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IMFKMS 1pgl2 295 :VVLKFS T0287 136 :RE 1pgl2 302 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20803 # 1gnyA.129.105 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S134 (1gnyA)T201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1gnyA)E204 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKM 1gnyA 196 :LTLTC T0287 135 :IR 1gnyA 202 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=20805 # 1l6pA.129.80 read from T0287.t04.many.frag # found chain 1l6pA in training set T0287 129 :IMFKMSIRE 1l6pA 81 :LTLPVTINQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20806 # 1dkiA.129.201 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 129 :IMFKMSIRE 1dkiA 84 :KNLFAAIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=20807 # 1quqB.129.24 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1quqB)K33 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFK 1quqB 25 :VCFV T0287 134 :SIR 1quqB 30 :RLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=20809 # 1ddlA.129.127 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMF 1ddlA 128 :IDV T0287 133 :MSIRE 1ddlA 132 :ANLTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20811 # 1qexA.129.157 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1qexA 158 :SVWN T0287 134 :SI 1qexA 163 :SI T0287 137 :E 1qexA 166 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=20814 # 2d9rA.129.21 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 129 :IM 2d9rA 22 :IE T0287 133 :MSIRE 2d9rA 26 :AIIRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20816 # 1v05A.129.24 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)I135 (1v05A)C2660 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMS 1v05A 2656 :FTVD T0287 136 :RE 1v05A 2661 :SK Number of specific fragments extracted= 2 number of extra gaps= 2 total=20818 # 2cy7A.129.306 read from T0287.t04.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)M130 (2cy7A)P305 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :I 2cy7A 304 :P T0287 131 :FKMSIRE 2cy7A 306 :CRMSIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20820 # 1gvp.129.42 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 129 :IMFK 1gvp 43 :VLVK T0287 135 :IRE 1gvp 49 :LDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20822 # 1ikoP.129.81 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ikoP 111 :V T0287 131 :FKMSIRE 1ikoP 113 :FTIKFQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20824 # 1mspA.129.67 read from T0287.t04.many.frag # found chain 1mspA in template set T0287 129 :IMFKMSIRE 1mspA 68 :VLMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20825 # 1dg6A.129.129 read from T0287.t04.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)K132 (1dg6A)M223 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1dg6A)N228 T0287 129 :IMF 1dg6A 220 :ILL T0287 133 :MSI 1dg6A 224 :KSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20827 # 1b7yA.129.264 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)I129 (1b7yA)A265 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIRE 1b7yA 266 :QFAVWWPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20828 # 1wmxA.129.133 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIRE 1wmxA 138 :IPLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20830 # 2fojA.129.18 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)S134 (2fojA)T74 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2fojA)E76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 129 :IMFKM 2fojA 69 :ATFQF T0287 135 :I 2fojA 75 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=20832 # 2f15A.129.22 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20834 # 1ng0A.129.179 read from T0287.t04.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)K132 (1ng0A)A183 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMF 1ng0A 180 :VTS T0287 133 :MSIRE 1ng0A 184 :LPCDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20836 # 1vajA.129.114 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 129 :IMFK 1vajA 115 :ELIE T0287 134 :SIRE 1vajA 120 :PPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20838 # 1ttwA.129.47 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1ttwA)R53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 133 :M 1ttwA 52 :M T0287 135 :I 1ttwA 54 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=20841 # 1ntvA.129.81 read from T0287.t04.many.frag # found chain 1ntvA in training set T0287 129 :IMFKMSIRE 1ntvA 104 :LQHHHAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20842 # 1wyzA.129.206 read from T0287.t04.many.frag # found chain 1wyzA in template set T0287 129 :IMFKMSIRE 1wyzA 207 :FIQTRTVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20843 # 1wthD.129.83 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1wthD 84 :KTRIYGCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20844 # 2bzgA.129.115 read from T0287.t04.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)M133 (2bzgA)C133 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 2bzgA 129 :SLYC T0287 134 :SIRE 2bzgA 134 :SIFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20846 # 2bjqA.129.43 read from T0287.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 Warning: unaligning (T0287)E137 (2bjqA)N52 because L (left) conformation "forbidden" or filtered. T0287 129 :IMFKM 2bjqA 44 :IHGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20847 # 1crzA.129.285 read from T0287.t04.many.frag # found chain 1crzA in template set T0287 129 :IMFKMSIRE 1crzA 292 :QVYKVNING Number of specific fragments extracted= 1 number of extra gaps= 0 total=20848 # 2bvcA.129.40 read from T0287.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2bvcA)F35 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2bvcA)F35 T0287 129 :I 2bvcA 33 :Q T0287 132 :KMSIRE 2bvcA 36 :TIPASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20850 # 1c8nA.129.202 read from T0287.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M130 (1c8nA)Y204 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1c8nA 203 :I T0287 131 :FKMSIRE 1c8nA 205 :VDVDVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20852 # 1te0A.130.306 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20854 # 1pgl2.130.295 read from T0287.t04.many.frag # found chain 1pgl2 in template set T0287 130 :MFKMSIREM 1pgl2 296 :VLKFSQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20855 # 1l6pA.130.81 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MF 1l6pA 82 :TL T0287 133 :MSIREM 1l6pA 85 :VTINQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20857 # 1gnyA.130.106 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 130 :MFKMSIREM 1gnyA 197 :TLTCTIDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=20858 # 1dkiA.130.202 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 130 :MFKMSIREM 1dkiA 85 :NLFAAISTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20859 # 1ddlA.130.128 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)M133 (1ddlA)A132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ddlA)L134 because G (3-10) conformation "forbidden" or filtered. T0287 130 :MFK 1ddlA 129 :DVE T0287 134 :S 1ddlA 133 :N T0287 136 :REM 1ddlA 135 :TNL Number of specific fragments extracted= 3 number of extra gaps= 2 total=20862 # 2cy7A.130.307 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 130 :MFKMSIREM 2cy7A 305 :PCRMSIAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20863 # 1quqB.130.25 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1quqB 26 :CFV T0287 134 :SIREM 1quqB 30 :RLEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20865 # 1vajA.130.115 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M130 (1vajA)L116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1vajA)E118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :F 1vajA 117 :I T0287 134 :SIREM 1vajA 120 :PPEER Number of specific fragments extracted= 2 number of extra gaps= 2 total=20867 # 2f15A.130.23 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :M 2f15A 91 :F T0287 134 :SIREM 2f15A 95 :SFNNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20869 # 1qexA.130.158 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1qexA 159 :VWN T0287 134 :SI 1qexA 163 :SI T0287 137 :EM 1qexA 166 :SM Number of specific fragments extracted= 3 number of extra gaps= 2 total=20872 # 1b7yA.130.265 read from T0287.t04.many.frag # found chain 1b7yA in template set T0287 130 :MFKMSIREM 1b7yA 266 :QFAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20873 # 1ng0A.130.180 read from T0287.t04.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)M133 (1ng0A)L184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 (1ng0A)C186 because G (3-10) conformation "forbidden" or filtered. T0287 130 :MFK 1ng0A 181 :TSA T0287 134 :S 1ng0A 185 :P T0287 136 :REM 1ng0A 187 :DEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=20876 # 1mspA.130.68 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)E137 (1mspA)T76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1mspA 69 :LMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20877 # 1v05A.130.25 read from T0287.t04.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 131 :FKMSIREM 1v05A 2656 :FTVDCSKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20878 # 1gvp.130.43 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFK 1gvp 44 :LVK T0287 135 :IRE 1gvp 49 :LDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=20880 # 1wthD.130.84 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1wthD 85 :TRIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=20882 # 1ikoP.130.82 read from T0287.t04.many.frag # found chain 1ikoP in template set T0287 130 :MFKMSIREM 1ikoP 112 :KFTIKFQEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20883 # 2fojA.130.19 read from T0287.t04.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)E137 (2fojA)R77 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 2fojA 70 :TFQFTVE T0287 138 :M 2fojA 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=20885 # 1c8nA.130.203 read from T0287.t04.many.frag # found chain 1c8nA in template set T0287 130 :MFKMSIREM 1c8nA 204 :YVDVDVTRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20886 # 1wmxA.130.134 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 Warning: unaligning (T0287)S134 (1wmxA)P139 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :M 1wmxA 135 :H T0287 133 :M 1wmxA 138 :I T0287 135 :IREM 1wmxA 140 :LRDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=20889 # 2d9rA.130.22 read from T0287.t04.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 130 :M 2d9rA 23 :E T0287 133 :MSIREM 2d9rA 26 :AIIRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20891 # 1wyzA.130.207 read from T0287.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1wyzA 208 :IQT T0287 134 :SIREM 1wyzA 212 :TVKDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20893 # 1ntvA.130.82 read from T0287.t04.many.frag # found chain 1ntvA in training set T0287 130 :MFKMSIREM 1ntvA 105 :QHHHAVHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20894 # 1ttwA.130.48 read from T0287.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)T58 T0287 132 :KMSI 1ttwA 51 :FMRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=20895 # 1nls.130.61 read from T0287.t04.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 T0287 130 :MFKM 1nls 62 :SAVV T0287 136 :REM 1nls 68 :PNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20897 # 1msc.130.42 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 130 :MFKMSI 1msc 43 :KVTCSV T0287 138 :M 1msc 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=20899 # 1gmeA.130.55 read from T0287.t04.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1gmeA 56 :VFKADLP T0287 138 :M 1gmeA 64 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20901 # 1ve2A.130.194 read from T0287.t04.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)M133 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1ve2A 195 :VRL T0287 134 :SIREM 1ve2A 199 :RVEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20903 # 1e2wA.130.190 read from T0287.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)M130 (1e2wA)G191 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1e2wA 192 :FEVSIEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20904 # 1l6pA.131.82 read from T0287.t04.many.frag # found chain 1l6pA in training set T0287 131 :FKMSIREMD 1l6pA 83 :LPVTINQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20905 # 1pgl2.131.296 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)R136 (1pgl2)E302 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMSI 1pgl2 297 :LKFSQ T0287 137 :EMD 1pgl2 303 :EFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20907 # 1te0A.131.307 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20909 # 1gnyA.131.107 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 131 :FKMSIREMD 1gnyA 198 :LTCTIDEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20910 # 2cy7A.131.308 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 131 :FKMSIREMD 2cy7A 306 :CRMSIAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20911 # 2f15A.131.24 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :D 2f15A 100 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=20913 # 1ng0A.131.181 read from T0287.t04.many.frag # found chain 1ng0A in template set T0287 131 :FKMSIREMD 1ng0A 182 :SALPCDEFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20914 # 1vajA.131.116 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :FK 1vajA 117 :IE T0287 134 :SIREMD 1vajA 120 :PPEERP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20916 # 1bco.131.285 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)K132 (1bco)R534 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :F 1bco 533 :V T0287 134 :SIREMD 1bco 536 :DPQQLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20918 # 1qexA.131.159 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1qexA 160 :WN T0287 134 :SI 1qexA 163 :SI T0287 137 :EMD 1qexA 166 :SMF Number of specific fragments extracted= 3 number of extra gaps= 2 total=20921 # 1ddlA.131.129 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)R136 (1ddlA)T135 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMSI 1ddlA 130 :VEANL T0287 137 :EMD 1ddlA 136 :NLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20923 # 1mspA.131.69 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1mspA 70 :MAVSCDT T0287 139 :D 1mspA 78 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=20925 # 1c8nA.131.204 read from T0287.t04.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)R136 (1c8nA)T210 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMSI 1c8nA 205 :VDVDV T0287 137 :EMD 1c8nA 211 :RFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20927 # 1dkiA.131.203 read from T0287.t04.many.frag # found chain 1dkiA in training set T0287 131 :FKMSIREMD 1dkiA 86 :LFAAISTRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20928 # 1c96A.131.309 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 T0287 131 :FKMSIREM 1c96A 311 :IEINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20929 # 1e2wA.131.191 read from T0287.t04.many.frag # found chain 1e2wA in training set T0287 131 :FKMSIREMD 1e2wA 192 :FEVSIEKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20930 # 1wthD.131.85 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIR 1wthD 86 :RIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=20932 # 1msc.131.43 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)K132 (1msc)T45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 131 :F 1msc 44 :V T0287 133 :MSI 1msc 46 :CSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 3 number of extra gaps= 2 total=20935 # 1b7yA.131.266 read from T0287.t04.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)D139 (1b7yA)G275 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1b7yA 267 :FAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20936 # 1wyzA.131.208 read from T0287.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1wyzA 209 :QT T0287 134 :SIREMD 1wyzA 212 :TVKDWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20938 # 1xt5A.131.72 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1xt5A)Y73 Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xt5A)F80 because G (3-10) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :E 1xt5A 79 :D T0287 139 :D 1xt5A 81 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=20941 # 1nls.131.62 read from T0287.t04.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 T0287 131 :FKM 1nls 63 :AVV T0287 136 :REMD 1nls 68 :PNAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20943 # 1gvp.131.44 read from T0287.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. T0287 131 :FK 1gvp 45 :VK T0287 135 :IRE 1gvp 49 :LDE T0287 139 :D 1gvp 53 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=20946 # 1gmeA.131.56 read from T0287.t04.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIR 1gmeA 57 :FKADLP T0287 138 :MD 1gmeA 64 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20948 # 1wmxA.131.135 read from T0287.t04.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 133 :MSIREMD 1wmxA 138 :IPLRDLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=20949 # 1v05A.131.26 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 131 :FKMSIREMD 1v05A 2656 :FTVDCSKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20950 # 1s28A.131.53 read from T0287.t04.many.frag # found chain 1s28A in template set T0287 131 :FKMSIREMD 1s28A 54 :FLSDIGVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=20951 # 1quqB.131.26 read from T0287.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)K132 (1quqB)V28 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :F 1quqB 27 :F T0287 134 :SIREMD 1quqB 30 :RLEKIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20953 # 1kq1A.131.31 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1kq1A 32 :MKGVIEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20954 # 1gpqA.131.80 read from T0287.t04.many.frag # found chain 1gpqA in template set T0287 131 :FKMSIREMD 1gpqA 81 :LFSTIDEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20955 # 1l6pA.132.83 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K132 (1l6pA)P84 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1l6pA 85 :VTINQASA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20956 # 1bco.132.286 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1bco 534 :R T0287 134 :SIREMDS 1bco 536 :DPQQLHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20958 # 2cy7A.132.309 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 132 :KMSIREMDS 2cy7A 307 :RMSIAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20959 # 2f15A.132.25 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 138 :MDS 2f15A 99 :WST Number of specific fragments extracted= 2 number of extra gaps= 2 total=20961 # 1gnyA.132.108 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1gnyA 199 :TCTIDEDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20962 # 1te0A.132.308 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 T0287 132 :KMS 1te0A 345 :QVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=20964 # 1vajA.132.117 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)K132 (1vajA)E118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1vajA 120 :PPEERPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20965 # 1ng0A.132.182 read from T0287.t04.many.frag # found chain 1ng0A in template set T0287 132 :KMSIREMDS 1ng0A 183 :ALPCDEFSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20966 # 1pgl2.132.297 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)S140 (1pgl2)T306 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1pgl2 298 :KFSQEEFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20967 # 1e2wA.132.192 read from T0287.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)E137 (1e2wA)K198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1e2wA)G201 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSIR 1e2wA 193 :EVSIE T0287 138 :MD 1e2wA 199 :AN Number of specific fragments extracted= 2 number of extra gaps= 2 total=20969 # 1xt5A.132.73 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EMDS 1xt5A 79 :DFLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20971 # 1h6lA.132.171 read from T0287.t04.many.frag # found chain 1h6lA in training set T0287 132 :KMSIREMDS 1h6lA 200 :KVRAFKMNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20972 # 1luzA.132.15 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1luzA 16 :K T0287 134 :SI 1luzA 18 :RV T0287 137 :EMDS 1luzA 21 :EKDY Number of specific fragments extracted= 3 number of extra gaps= 2 total=20975 # 1c96A.132.310 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 132 :KMSIREM 1c96A 312 :EINLSEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20976 # 1qexA.132.160 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)K132 (1qexA)N161 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1qexA)F168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSI 1qexA 162 :YSI T0287 137 :EM 1qexA 166 :SM Number of specific fragments extracted= 2 number of extra gaps= 3 total=20978 # 1hx6A.132.359 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)K132 (1hx6A)V361 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1hx6A 362 :VNPKTVNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=20979 # 1kq1A.132.32 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1kq1A 33 :K T0287 134 :SIRE 1kq1A 35 :VIEE T0287 140 :S 1kq1A 41 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=20982 # 1wyzA.132.209 read from T0287.t04.many.frag # found chain 1wyzA in template set T0287 132 :KMSIREMDS 1wyzA 210 :TRTVKDWKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20983 # 1y4wA.132.335 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 132 :KM 1y4wA 355 :HM T0287 135 :IREM 1y4wA 358 :LKTI Number of specific fragments extracted= 2 number of extra gaps= 2 total=20985 # 2airB.132.123 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)E137 (2airB)K129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSIR 2airB 124 :SFAVR T0287 139 :D 2airB 131 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=20987 # 1s28A.132.54 read from T0287.t04.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1s28A 55 :LSDI T0287 137 :EMDS 1s28A 60 :VIDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20989 # 1wthD.132.86 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIREM 1wthD 87 :IYGCKHF T0287 140 :S 1wthD 95 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20991 # 1msc.132.44 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 T0287 132 :KMSI 1msc 45 :TCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20993 # 1gpqA.132.81 read from T0287.t04.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1gpqA 82 :FSTIDEKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20994 # 1ddlA.132.130 read from T0287.t04.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)D139 (1ddlA)N138 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1ddlA 131 :EANLTNL T0287 140 :S 1ddlA 139 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20996 # 1c8nA.132.205 read from T0287.t04.many.frag # found chain 1c8nA in template set T0287 132 :KMSIREMDS 1c8nA 206 :DVDVTRFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20997 # 1mspA.132.70 read from T0287.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIRE 1mspA 71 :AVSCDT T0287 139 :DS 1mspA 78 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20999 # 1s3rA.132.261 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 132 :KMSIREMDS 1s3rA 259 :TASVDSPNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21000 # 1ve2A.132.196 read from T0287.t04.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)K132 (1ve2A)L197 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1ve2A)G198 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0287 134 :SIREM 1ve2A 199 :RVEDL T0287 140 :S 1ve2A 205 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=21002 # 2ayh.132.120 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)K132 (2ayh)N121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSI 2ayh 122 :YYT T0287 137 :EM 2ayh 126 :GV T0287 140 :S 2ayh 129 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=21005 # 1bco.133.287 read from T0287.t04.many.frag # found chain 1bco in template set T0287 133 :MSIREMDSQ 1bco 535 :FDPQQLHST Number of specific fragments extracted= 1 number of extra gaps= 0 total=21006 # 1l6pA.133.84 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1l6pA 85 :VTINQASA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21007 # 2f15A.133.26 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIR 2f15A 94 :GSFN T0287 139 :DSQ 2f15A 100 :STK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21009 # 1luzA.133.16 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1luzA 18 :RV T0287 138 :MDS 1luzA 22 :KDY Number of specific fragments extracted= 2 number of extra gaps= 3 total=21011 # 1h6lA.133.172 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSI 1h6lA 201 :VRA T0287 137 :EMDSQ 1h6lA 205 :KMNSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21013 # 2cy7A.133.310 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 133 :MSIREMDSQ 2cy7A 308 :MSIAELDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21014 # 1xt5A.133.74 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREM 1xt5A 75 :ESFGDF T0287 141 :Q 1xt5A 83 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=21016 # 1vajA.133.118 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 133 :MSIREMDSQ 1vajA 119 :GPPEERPRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21017 # 1y4wA.133.336 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 133 :M 1y4wA 356 :M T0287 135 :IREM 1y4wA 358 :LKTI T0287 140 :SQ 1y4wA 363 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=21020 # 1hx6A.133.360 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)S140 (1hx6A)Q369 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1hx6A 362 :VNPKTVN T0287 141 :Q 1hx6A 370 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=21022 # 1s3rA.133.262 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 133 :MSIREMDSQ 1s3rA 260 :ASVDSPNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21023 # 1te0A.133.309 read from T0287.t04.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0287)Q141 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0287 133 :MS 1te0A 346 :VT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=21025 # 1gnyA.133.109 read from T0287.t04.many.frag # found chain 1gnyA in training set T0287 133 :MSIREMDSQ 1gnyA 200 :CTIDEDDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21026 # 1kq1A.133.33 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 140 :SQ 1kq1A 41 :KY Number of specific fragments extracted= 2 number of extra gaps= 2 total=21028 # 1c96A.133.311 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 133 :MSIREM 1c96A 313 :INLSEL T0287 141 :Q 1c96A 321 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=21030 # 2airB.133.124 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIRE 2airB 125 :FAVRK T0287 139 :D 2airB 131 :A T0287 141 :Q 2airB 133 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=21033 # 1oygA.133.170 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 T0287 133 :MSIRE 1oygA 197 :VNVSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=21035 # 1e2wA.133.193 read from T0287.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0287)E137 (1e2wA)K198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1e2wA)G201 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIR 1e2wA 194 :VSIE T0287 138 :MD 1e2wA 199 :AN T0287 141 :Q 1e2wA 202 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=21038 # 1zpwX.133.63 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREMDS 1zpwX 64 :LRIYPVAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21039 # 1ng0A.133.183 read from T0287.t04.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)S140 (1ng0A)N191 because G (3-10) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1ng0A 184 :LPCDEFS T0287 141 :Q 1ng0A 192 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=21041 # 1pgl2.133.298 read from T0287.t04.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)S140 (1pgl2)T306 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIREMD 1pgl2 299 :FSQEEFL T0287 141 :Q 1pgl2 307 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=21043 # 1b66A.133.124 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIRE 1b66A 129 :VKVYE T0287 139 :DSQ 1b66A 135 :DNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21045 # 1msc.133.45 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)M138 (1msc)S51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 T0287 133 :MSI 1msc 46 :CSV T0287 139 :D 1msc 52 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=21047 # 1mkfA.133.319 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREM 1mkfA 320 :LQMTSH T0287 140 :SQ 1mkfA 327 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21049 # 1obdA.133.219 read from T0287.t04.many.frag # found chain 1obdA in training set T0287 133 :MSIREMDSQ 1obdA 220 :FGIDEKTNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21050 # 1gpqA.133.82 read from T0287.t04.many.frag # found chain 1gpqA in template set T0287 133 :MSIREMDSQ 1gpqA 83 :STIDEKTSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21051 # 2ayh.133.121 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M133 (2ayh)Y122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREMD 2ayh 123 :YTNGVG T0287 141 :Q 2ayh 130 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=21053 # 1qexA.133.161 read from T0287.t04.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1qexA)S166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIR 1qexA 163 :SIE T0287 138 :MD 1qexA 167 :MF T0287 141 :Q 1qexA 170 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=21056 # 1wthD.133.87 read from T0287.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)S134 (1wthD)G89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wthD)I104 T0287 133 :M 1wthD 88 :Y T0287 135 :IR 1wthD 90 :CK T0287 138 :MDS 1wthD 93 :FSV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21059 # 1s28A.133.55 read from T0287.t04.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSI 1s28A 56 :SDI T0287 137 :EMDSQ 1s28A 60 :VIDNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21061 # 1bco.134.288 read from T0287.t04.many.frag # found chain 1bco in template set T0287 134 :SIREMDSQI 1bco 536 :DPQQLHSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21062 # 1luzA.134.17 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SI 1luzA 18 :RV T0287 138 :M 1luzA 22 :K T0287 141 :QI 1luzA 25 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21065 # 1h6lA.134.173 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1h6lA 202 :RA T0287 137 :EMDSQI 1h6lA 205 :KMNSQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21067 # 2f15A.134.27 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 138 :MDSQI 2f15A 99 :WSTKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21069 # 1xt5A.134.75 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SI 1xt5A 76 :SF T0287 137 :EMD 1xt5A 79 :DFL T0287 141 :QI 1xt5A 83 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21072 # 1oygA.134.171 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 134 :SIREMDS 1oygA 198 :NVSASDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=21073 # 1zpwX.134.64 read from T0287.t04.many.frag # found chain 1zpwX in template set T0287 134 :SIREMDSQI 1zpwX 65 :RIYPVAGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21074 # 1vajA.134.119 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 134 :SIREMDSQI 1vajA 120 :PPEERPRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21075 # 1hx6A.134.361 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)D139 (1hx6A)N368 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREM 1hx6A 363 :NPKTV T0287 140 :S 1hx6A 369 :Q T0287 142 :I 1hx6A 371 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=21078 # 1y4wA.134.337 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREM 1y4wA 357 :ALKTI T0287 141 :QI 1y4wA 364 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21080 # 1s3rA.134.263 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 134 :SIREMDSQI 1s3rA 261 :SVDSPNSPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21081 # 2cy7A.134.311 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 134 :SIREMDSQI 2cy7A 309 :SIAELDPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21082 # 1l6pA.134.85 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1l6pA 86 :TINQASA T0287 142 :I 1l6pA 94 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=21084 # 1b66A.134.125 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)S140 (1b66A)N136 because G (3-10) conformation "forbidden" or filtered. T0287 134 :SIREMD 1b66A 130 :KVYETD T0287 141 :QI 1b66A 137 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21086 # 1obdA.134.220 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1obdA 221 :GIDEKT T0287 141 :QI 1obdA 228 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21088 # 2airB.134.125 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMDS 2airB 126 :AVRKRAN T0287 142 :I 2airB 134 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=21090 # 1mkfA.134.320 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1mkfA)V328 because D (zeta) conformation "forbidden" or filtered. T0287 134 :SIREM 1mkfA 321 :QMTSH T0287 142 :I 1mkfA 329 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=21092 # 1f00I.134.95 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 134 :SIREMDSQI 1f00I 753 :TLTIDDGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21093 # 1l4dB.134.73 read from T0287.t04.many.frag # found chain 1l4dB in template set T0287 134 :SIREMDSQI 1l4dB 99 :EVIDFASDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21094 # 1gpqA.134.83 read from T0287.t04.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1gpqA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREMD 1gpqA 84 :TIDEKT T0287 142 :I 1gpqA 92 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21096 # 1msc.134.46 read from T0287.t04.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)M138 (1msc)S51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1msc)N55 T0287 134 :SI 1msc 47 :SV T0287 139 :D 1msc 52 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=21098 # 1kq1A.134.34 read from T0287.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 140 :SQI 1kq1A 41 :KYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21100 # 1thtA.134.156 read from T0287.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 134 :SIRE 1thtA 157 :PIDE T0287 140 :SQI 1thtA 163 :NDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21102 # 1olzA.134.325 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)S134 (1olzA)T326 because S (epsilon) conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1olzA 327 :VEQSHTKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=21103 # 1c96A.134.312 read from T0287.t04.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 134 :SIREM 1c96A 314 :NLSEL T0287 141 :QI 1c96A 321 :HI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21105 # 1hjrA.134.16 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :S 1hjrA 17 :V T0287 139 :DS 1hjrA 22 :GR T0287 142 :I 1hjrA 25 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=21108 # 1k3bA.134.81 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREM 1k3bA 82 :KYKEE T0287 141 :QI 1k3bA 89 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21110 # 1tzlA.134.285 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)M138 (1tzlA)L291 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :S 1tzlA 287 :V T0287 137 :E 1tzlA 290 :A T0287 140 :S 1tzlA 293 :S T0287 142 :I 1tzlA 295 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=21114 # 1gnyA.134.110 read from T0287.t04.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1gnyA 201 :TIDEDD T0287 141 :QI 1gnyA 208 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21116 # 2ayh.134.122 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREM 2ayh 123 :YTNGV T0287 141 :QI 2ayh 130 :HE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21118 # 1bco.135.289 read from T0287.t04.many.frag # found chain 1bco in template set T0287 135 :IREMDSQIE 1bco 537 :PQQLHSTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21119 # 1xt5A.135.76 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 1xt5A 77 :F T0287 137 :EM 1xt5A 79 :DF T0287 141 :QIE 1xt5A 83 :RAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=21122 # 1h6lA.135.174 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :I 1h6lA 203 :A T0287 137 :EMDS 1h6lA 205 :KMNS T0287 142 :IE 1h6lA 210 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=21125 # 2f15A.135.28 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 135 :IR 2f15A 96 :FN T0287 139 :DSQIE 2f15A 100 :STKIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21127 # 1luzA.135.18 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1luzA)E21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :I 1luzA 19 :V T0287 138 :MDS 1luzA 22 :KDY T0287 142 :IE 1luzA 26 :LY Number of specific fragments extracted= 3 number of extra gaps= 2 total=21130 # 1oygA.135.172 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 135 :IREMDS 1oygA 199 :VSASDS T0287 143 :E 1oygA 207 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=21132 # 1zpwX.135.65 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1zpwX)E74 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREMD 1zpwX 66 :IYPVA T0287 141 :QI 1zpwX 72 :QV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21134 # 1hx6A.135.362 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1hx6A 364 :PKTVNQNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21135 # 1hjrA.135.17 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=21136 # 1vajA.135.120 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 135 :IREMDSQIE 1vajA 121 :PEERPRKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21137 # 1f00I.135.96 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 135 :IREMDSQIE 1f00I 754 :LTIDDGNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21138 # 1olzA.135.326 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1olzA)V335 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :I 1olzA 327 :V T0287 137 :EM 1olzA 329 :QS T0287 140 :SQI 1olzA 332 :TKW Number of specific fragments extracted= 3 number of extra gaps= 3 total=21141 # 1s3rA.135.264 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 135 :IREMDSQIE 1s3rA 262 :VDSPNSPSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21142 # 2d0oA.135.474 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)E137 (2d0oA)H477 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IR 2d0oA 475 :LR T0287 138 :MDSQIE 2d0oA 478 :EDGSVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21144 # 1l4dB.135.74 read from T0287.t04.many.frag # found chain 1l4dB in template set T0287 135 :IREMDSQIE 1l4dB 100 :VIDFASDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21145 # 1y4wA.135.338 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1y4wA)K364 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREM 1y4wA 358 :LKTI T0287 142 :IE 1y4wA 365 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21147 # 1mkfA.135.321 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1mkfA)T330 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREMD 1mkfA 322 :MTSHD T0287 141 :QI 1mkfA 328 :VW Number of specific fragments extracted= 2 number of extra gaps= 2 total=21149 # 1obdA.135.221 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1obdA)E228 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IREMD 1obdA 222 :IDEKT T0287 142 :IE 1obdA 229 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=21151 # 1b66A.135.126 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1b66A)N136 because G (3-10) conformation "forbidden" or filtered. T0287 135 :IRE 1b66A 131 :VYE T0287 139 :D 1b66A 135 :D T0287 141 :QIE 1b66A 137 :NIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21154 # 1tzlA.135.286 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1tzlA 290 :ALNS T0287 142 :IE 1tzlA 295 :IE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21156 # 1obfO.135.221 read from T0287.t04.many.frag # found chain 1obfO in training set Warning: unaligning (T0287)M138 (1obfO)L225 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1obfO)G227 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IRE 1obfO 222 :LPE T0287 139 :D 1obfO 226 :D T0287 141 :QIE 1obfO 228 :KLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=21159 # 1k3bA.135.82 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)E137 (1k3bA)E85 because N (gamma') conformation "forbidden" or filtered. T0287 135 :IR 1k3bA 83 :YK T0287 138 :MDSQIE 1k3bA 86 :EGSKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21161 # 1thtA.135.157 read from T0287.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 135 :IRE 1thtA 158 :IDE T0287 140 :SQIE 1thtA 163 :NDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21163 # 2c5qA.135.140 read from T0287.t04.many.frag # found chain 2c5qA in template set T0287 135 :IREMDSQIE 2c5qA 141 :SCAPKAVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21164 # 2ayh.135.123 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2ayh)V127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2ayh)K132 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :I 2ayh 124 :T T0287 140 :SQI 2ayh 129 :GHE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21166 # 2airB.135.126 read from T0287.t04.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IRE 2airB 127 :VRK T0287 139 :DSQIE 2airB 131 :ANDIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21168 # 2cy7A.135.312 read from T0287.t04.many.frag # found chain 2cy7A in template set T0287 135 :IREMDSQIE 2cy7A 310 :IAELDPSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21169 # 1d3yA.135.98 read from T0287.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. T0287 135 :IREM 1d3yA 167 :CTKL T0287 140 :SQIE 1d3yA 172 :TGAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21171 # 1xmtA.135.29 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IR 1xmtA 30 :MR T0287 140 :SQIE 1xmtA 35 :KVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21173 # 1l6pA.135.86 read from T0287.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IREM 1l6pA 87 :INQA T0287 140 :S 1l6pA 92 :A T0287 142 :IE 1l6pA 94 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=21176 # 1bco.136.290 read from T0287.t04.many.frag # found chain 1bco in template set T0287 136 :REMDSQIEL 1bco 538 :QQLHSTVYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21177 # 1xt5A.136.77 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMD 1xt5A 79 :DFL T0287 141 :QIEL 1xt5A 83 :RASV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21179 # 1oygA.136.173 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 136 :RE 1oygA 200 :SA T0287 139 :DS 1oygA 203 :DS T0287 143 :EL 1oygA 207 :NI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21182 # 1h6lA.136.175 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1h6lA)K205 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQIEL 1h6lA 206 :MNSQTEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21183 # 1hjrA.136.18 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=21184 # 2f15A.136.29 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :RE 2f15A 97 :NN T0287 139 :DS 2f15A 100 :ST T0287 142 :IEL 2f15A 103 :IPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21187 # 1luzA.136.19 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1luzA 21 :EK T0287 140 :S 1luzA 24 :Y T0287 142 :IEL 1luzA 26 :LYI Number of specific fragments extracted= 3 number of extra gaps= 3 total=21190 # 1zpwX.136.66 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E137 (1zpwX)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1zpwX)A70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 136 :R 1zpwX 67 :Y T0287 138 :M 1zpwX 69 :V T0287 141 :QIEL 1zpwX 72 :QVEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21193 # 1f00I.136.97 read from T0287.t04.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)Q141 (1f00I)N760 because D (zeta) conformation "forbidden" or filtered. T0287 136 :REMDS 1f00I 755 :TIDDG T0287 142 :IEL 1f00I 761 :IEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21195 # 1olzA.136.327 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1olzA 329 :QSHTKWVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=21196 # 2d0oA.136.475 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :REMD 2d0oA 476 :RHED T0287 141 :QIEL 2d0oA 481 :SVQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21198 # 1obdA.136.222 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 136 :REMD 1obdA 223 :DEKT T0287 141 :QIEL 1obdA 228 :EIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21200 # 2c5qA.136.141 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)E137 (2c5qA)A143 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2c5qA)P144 because G (3-10) conformation "forbidden" or filtered. T0287 136 :R 2c5qA 142 :C T0287 139 :DSQIEL 2c5qA 145 :KAVVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21202 # 1hx6A.136.363 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 136 :REMDS 1hx6A 365 :KTVNQ T0287 142 :IEL 1hx6A 371 :ARL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21204 # 1mkfA.136.322 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)E137 (1mkfA)S324 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :R 1mkfA 323 :T T0287 138 :MD 1mkfA 325 :HD T0287 141 :QIEL 1mkfA 328 :VWTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=21207 # 1vajA.136.121 read from T0287.t04.many.frag # found chain 1vajA in template set T0287 136 :REMDSQIEL 1vajA 122 :EERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21208 # 1s3rA.136.265 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)R136 (1s3rA)D263 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1s3rA 264 :SPN T0287 141 :QIEL 1s3rA 268 :PSAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21210 # 1l4dB.136.75 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :R 1l4dB 101 :I T0287 138 :MDSQIEL 1l4dB 103 :FASDATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21212 # 1r6wA.136.12 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 136 :REMDSQIE 1r6wA 11 :IPMDAGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21213 # 1b66A.136.127 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1b66A)N137 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :RE 1b66A 132 :YE T0287 139 :DS 1b66A 135 :DN T0287 142 :IEL 1b66A 138 :IVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21216 # 1k3bA.136.83 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)M138 (1k3bA)E86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :RE 1k3bA 84 :KE T0287 141 :QIEL 1k3bA 89 :KVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21218 # 1ru3A.136.336 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 136 :REMDSQIEL 1ru3A 337 :RKGDMHVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21219 # 2ayh.136.124 read from T0287.t04.many.frag # found chain 2ayh in training set T0287 136 :REMDSQIEL 2ayh 125 :NGVGGHEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21220 # 1rv9A.136.187 read from T0287.t04.many.frag # found chain 1rv9A in training set T0287 136 :REMDSQIEL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21221 # 1tzlA.136.287 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1tzlA 290 :ALNS T0287 142 :IE 1tzlA 295 :IE Number of specific fragments extracted= 2 number of extra gaps= 3 total=21223 # 1q67A.136.184 read from T0287.t04.many.frag # found chain 1q67A in template set Warning: unaligning (T0287)R136 (1q67A)E185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1q67A)D188 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1q67A)I192 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EM 1q67A 186 :VK T0287 140 :SQI 1q67A 189 :ELV T0287 144 :L 1q67A 193 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=21226 # 1xmtA.136.30 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :R 1xmtA 31 :R T0287 140 :SQI 1xmtA 35 :KVM T0287 144 :L 1xmtA 39 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=21229 # 1y4wA.136.339 read from T0287.t04.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1y4wA 359 :KTI T0287 140 :SQIEL 1y4wA 363 :SKATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21231 # 1uekA.136.41 read from T0287.t04.many.frag # found chain 1uekA in training set Warning: unaligning (T0287)M138 (1uekA)V44 because Y (epsilon') conformation "forbidden" or filtered. T0287 136 :RE 1uekA 42 :EP T0287 139 :DSQIEL 1uekA 45 :SSGLHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21233 # 1d3yA.136.99 read from T0287.t04.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. T0287 136 :REM 1d3yA 168 :TKL T0287 140 :SQIEL 1d3yA 172 :TGAYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21235 # 1bco.137.291 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)Q141 (1bco)T543 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMDS 1bco 539 :QLHS T0287 142 :IELY 1bco 544 :VYCY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21237 # 1hjrA.137.19 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :S 1hjrA 23 :R T0287 142 :I 1hjrA 25 :L T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=21240 # 1xt5A.137.78 read from T0287.t04.many.frag # found chain 1xt5A in template set T0287 137 :EMDSQIELY 1xt5A 79 :DFLGRASVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21241 # 2c5qA.137.142 read from T0287.t04.many.frag # found chain 2c5qA in template set T0287 137 :EMDSQIELY 2c5qA 143 :APKAVVKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21242 # 1f00I.137.98 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 137 :EMDSQIELY 1f00I 756 :IDDGNIEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21243 # 2d0oA.137.476 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMD 2d0oA 477 :HED T0287 141 :QIELY 2d0oA 481 :SVQFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21245 # 1h6lA.137.176 read from T0287.t04.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EMDS 1h6lA 205 :KMNS T0287 142 :IELY 1h6lA 210 :TEGM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21247 # 1oygA.137.174 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)E137 (1oygA)A201 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21249 # 1r6wA.137.13 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 137 :EMDSQIE 1r6wA 12 :PMDAGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21250 # 1olzA.137.328 read from T0287.t04.many.frag # found chain 1olzA in template set T0287 137 :EMDSQIELY 1olzA 329 :QSHTKWVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21251 # 1zpwX.137.67 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E137 (1zpwX)P68 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1zpwX 69 :VAGQVEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21252 # 2f15A.137.30 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2f15A 99 :WSTKIPLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21253 # 1obdA.137.223 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 137 :EMD 1obdA 224 :EKT T0287 141 :QIELY 1obdA 228 :EIILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21255 # 1rv9A.137.188 read from T0287.t04.many.frag # found chain 1rv9A in training set T0287 137 :EMDSQIELY 1rv9A 189 :EAATAFEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21256 # 1luzA.137.20 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1luzA 21 :EKDY T0287 142 :IELY 1luzA 26 :LYIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21258 # 1l4dB.137.76 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1l4dB)F103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1l4dB)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DSQI 1l4dB 104 :ASDA T0287 144 :LY 1l4dB 109 :IT Number of specific fragments extracted= 2 number of extra gaps= 2 total=21260 # 1s3rA.137.266 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1s3rA 265 :PNSPSALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=21261 # 1hx6A.137.364 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 137 :EMDS 1hx6A 366 :TVNQ T0287 142 :IELY 1hx6A 371 :ARLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21263 # 1ru3A.137.337 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)S140 (1ru3A)M341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EMD 1ru3A 338 :KGD T0287 141 :QI 1ru3A 342 :HV T0287 144 :L 1ru3A 345 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=21266 # 1mkfA.137.323 read from T0287.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EM 1mkfA 324 :SH T0287 141 :QIELY 1mkfA 328 :VWTST Number of specific fragments extracted= 2 number of extra gaps= 1 total=21268 # 1b66A.137.128 read from T0287.t04.many.frag # found chain 1b66A in template set T0287 137 :EMDSQIELY 1b66A 133 :ETDNNIVVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21269 # 1xmtA.137.31 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :M 1xmtA 33 :N T0287 140 :SQIELY 1xmtA 35 :KVMDLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21271 # 1k3bA.137.84 read from T0287.t04.many.frag # found chain 1k3bA in template set T0287 137 :EMDSQIELY 1k3bA 85 :EEGSKVTTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21272 # 2ayh.137.125 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2ayh)K132 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :M 2ayh 127 :V T0287 140 :SQI 2ayh 129 :GHE T0287 144 :LY 2ayh 133 :VI Number of specific fragments extracted= 3 number of extra gaps= 3 total=21275 # 1d3yA.137.100 read from T0287.t04.many.frag # found chain 1d3yA in template set T0287 137 :EMDSQIELY 1d3yA 169 :KLGTGAYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21276 # 1wubA.137.81 read from T0287.t04.many.frag # found chain 1wubA in training set T0287 137 :EMDSQIELY 1wubA 82 :FVSTQIEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21277 # 1jiwI.137.62 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1jiwI 63 :PTPA T0287 142 :IELY 1jiwI 68 :IALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21279 # 1tzlA.137.288 read from T0287.t04.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1tzlA 290 :ALNS T0287 142 :IE 1tzlA 295 :IE T0287 145 :Y 1tzlA 298 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=21282 # 1vajA.137.122 read from T0287.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)Y145 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1vajA 123 :ERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21283 # 1jiwI.137.9 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1jiwI 10 :DLA T0287 141 :QIELY 1jiwI 14 :QWTLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21285 # 1bco.138.292 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1bco 540 :LHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=21286 # 2c5qA.138.143 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)G146 (2c5qA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2c5qA 144 :PKAVVKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21287 # 1hjrA.138.20 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YG 1hjrA 28 :LG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21289 # 2d0oA.138.477 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 2d0oA 478 :ED T0287 141 :QIELYG 2d0oA 481 :SVQFFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21291 # 1r6wA.138.14 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 138 :MDSQIE 1r6wA 13 :MDAGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21292 # 1xt5A.138.79 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 138 :MD 1xt5A 80 :FL T0287 141 :QIELY 1xt5A 83 :RASVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21294 # 1f00I.138.99 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 138 :MDSQIELYG 1f00I 757 :DDGNIEIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21295 # 1olzA.138.329 read from T0287.t04.many.frag # found chain 1olzA in template set T0287 138 :MDSQIELYG 1olzA 330 :SHTKWVRYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21296 # 1oygA.138.175 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)G146 (1oygA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 1oygA 202 :SDS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21298 # 2f15A.138.31 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2f15A 99 :WSTKIPLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21299 # 1rv9A.138.189 read from T0287.t04.many.frag # found chain 1rv9A in training set T0287 138 :MDSQIELYG 1rv9A 190 :AATAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21300 # 1zpwX.138.68 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)D139 (1zpwX)A70 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :M 1zpwX 69 :V T0287 142 :IELYG 1zpwX 73 :VEVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21302 # 1h6lA.138.177 read from T0287.t04.many.frag # found chain 1h6lA in training set T0287 138 :MDSQIELYG 1h6lA 206 :MNSQTEGMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21303 # 1obdA.138.224 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 138 :MD 1obdA 225 :KT T0287 141 :QIELYG 1obdA 228 :EIILVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21305 # 1s3rA.138.267 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)M138 (1s3rA)P265 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :D 1s3rA 266 :N T0287 141 :QIELY 1s3rA 268 :PSALF Number of specific fragments extracted= 2 number of extra gaps= 3 total=21307 # 1ru3A.138.338 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 138 :MDSQIELYG 1ru3A 339 :GDMHVEFGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21308 # 1luzA.138.21 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1luzA)L30 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1luzA 22 :KDY T0287 142 :IELY 1luzA 26 :LYIY Number of specific fragments extracted= 2 number of extra gaps= 2 total=21310 # 1l4dB.138.77 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)D139 (1l4dB)A104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1l4dB)T108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1l4dB)D111 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :M 1l4dB 103 :F T0287 140 :SQI 1l4dB 105 :SDA T0287 144 :LY 1l4dB 109 :IT Number of specific fragments extracted= 3 number of extra gaps= 3 total=21313 # 1ok7A.138.37 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 1ok7A 38 :AD T0287 141 :QIELYG 1ok7A 41 :TLSLTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21315 # 1jiwI.138.63 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1jiwI 64 :TPAGIALL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21316 # 1xmtA.138.32 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmtA)D38 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1xmtA 34 :GKVM T0287 144 :LYG 1xmtA 39 :LVH Number of specific fragments extracted= 2 number of extra gaps= 2 total=21318 # 2ayh.138.126 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :M 2ayh 127 :V T0287 141 :QIELY 2ayh 130 :HEKVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21320 # 2bjfA.138.158 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 2bjfA 159 :TKEKLNVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=21321 # 1hx6A.138.365 read from T0287.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 138 :MDS 1hx6A 367 :VNQ T0287 142 :IELYG 1hx6A 371 :ARLLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21323 # 1b66A.138.129 read from T0287.t04.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1b66A)K142 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 1 number of extra gaps= 2 total=21324 # 1wubA.138.82 read from T0287.t04.many.frag # found chain 1wubA in training set T0287 138 :MDSQIELYG 1wubA 83 :VSTQIEPLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21325 # 2f6eA.138.16 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)D139 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :M 2f6eA 18 :I T0287 140 :SQIELY 2f6eA 20 :NKNFYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=21327 # 1jiwI.138.10 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1jiwI 11 :LA T0287 141 :QIELYG 1jiwI 14 :QWTLQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21329 # 1ijqA.138.237 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Y145 (1ijqA)L621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDSQIEL 1ijqA 614 :TGSDVNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21330 # 1k3bA.138.85 read from T0287.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 1k3bA 86 :EG T0287 141 :QIELYG 1k3bA 89 :KVTTYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21332 # 2c5qA.139.144 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)E143 (2c5qA)K149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQI 2c5qA 145 :KAVV T0287 144 :L 2c5qA 150 :A T0287 146 :GT 2c5qA 152 :GT Number of specific fragments extracted= 3 number of extra gaps= 2 total=21335 # 1bco.139.293 read from T0287.t04.many.frag # found chain 1bco in template set T0287 139 :DSQIELYGT 1bco 541 :HSTVYCYTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21336 # 2d0oA.139.478 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)Q141 (2d0oA)S481 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 2d0oA 479 :DG T0287 142 :IELYGT 2d0oA 482 :VQFFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=21338 # 1hjrA.139.21 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=21340 # 1olzA.139.330 read from T0287.t04.many.frag # found chain 1olzA in template set T0287 139 :DSQIELYGT 1olzA 331 :HTKWVRYNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21341 # 1r6wA.139.15 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 139 :DSQIE 1r6wA 14 :DAGVV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 2 number of extra gaps= 0 total=21343 Number of alignments=1143 # 1f00I.139.100 read from T0287.t04.many.frag # found chain 1f00I in template set T0287 139 :DSQIELYGT 1f00I 758 :DGNIEIVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21344 # 1rv9A.139.190 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1rv9A 191 :ATAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21345 # 1ru3A.139.339 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1ru3A 340 :DMHVEF T0287 146 :GT 1ru3A 347 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21347 # 1ok7A.139.38 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)D139 (1ok7A)D39 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1ok7A 40 :GTLSLTGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21348 # 1s3rA.139.268 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 139 :DSQIELYGT 1s3rA 266 :NSPSALFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21349 # 1xt5A.139.80 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1xt5A 81 :LGRASVA T0287 147 :T 1xt5A 89 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=21351 # 1jiwI.139.64 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 1jiwI 65 :PA T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :T 1jiwI 73 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=21354 # 1oygA.139.176 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)E143 (1oygA)N207 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DS 1oygA 203 :DS T0287 144 :LYGT 1oygA 208 :INGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21356 # 2f15A.139.32 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQIELY 2f15A 100 :STKIPLI T0287 147 :T 2f15A 108 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=21358 # 1zpwX.139.69 read from T0287.t04.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E143 (1zpwX)E74 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DSQI 1zpwX 70 :AGQV T0287 144 :LYGT 1zpwX 75 :VLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21360 # 1wubA.139.83 read from T0287.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1wubA 84 :STQIEPL T0287 147 :T 1wubA 92 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=21362 # 1ijqA.139.238 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DS 1ijqA 615 :GS T0287 142 :IELY 1ijqA 618 :VNLL T0287 147 :T 1ijqA 623 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=21365 # 1xmtA.139.33 read from T0287.t04.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)G146 (1xmtA)H41 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1xmtA 34 :GKVMDLV T0287 147 :T 1xmtA 42 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=21367 # 1l4dB.139.78 read from T0287.t04.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)D139 (1l4dB)A104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1l4dB)D111 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQIELY 1l4dB 105 :SDATIT T0287 147 :T 1l4dB 112 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=21369 # 1hbnB.139.3 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1hbnB 5 :EDKV T0287 144 :LY 1hbnB 10 :LY T0287 147 :T 1hbnB 13 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=21372 # 2bjfA.139.159 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2bjfA)N164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DS 2bjfA 160 :KE T0287 142 :I 2bjfA 163 :L T0287 144 :LY 2bjfA 165 :VF T0287 147 :T 2bjfA 168 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=21376 # 1obdA.139.225 read from T0287.t04.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1obdA)D233 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1obdA 226 :T T0287 141 :QIELY 1obdA 228 :EIILV T0287 147 :T 1obdA 234 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=21379 # 1luzA.139.22 read from T0287.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DS 1luzA 23 :DY T0287 142 :IELYGT 1luzA 26 :LYIYLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21381 # 1gd0A.139.43 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1gd0A 44 :DQLMAF T0287 146 :GT 1gd0A 51 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21383 # 1h6lA.139.178 read from T0287.t04.many.frag # found chain 1h6lA in training set T0287 139 :DSQIELYGT 1h6lA 207 :NSQTEGMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21384 # 2f6eA.139.17 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)D139 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. T0287 141 :QIELYGT 2f6eA 21 :KNFYFRN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21385 # 1jiwI.139.11 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E143 (1jiwI)T16 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1jiwI 12 :AGQW T0287 144 :LY 1jiwI 17 :LQ T0287 147 :T 1jiwI 20 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=21388 # 1n9eA.139.742 read from T0287.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)D139 (1n9eA)E743 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1n9eA)E747 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1n9eA)Y749 because L (left) conformation "forbidden" or filtered. T0287 140 :SQI 1n9eA 744 :SNW T0287 144 :L 1n9eA 748 :F T0287 146 :GT 1n9eA 750 :GN Number of specific fragments extracted= 3 number of extra gaps= 3 total=21391 # 2ayh.139.127 read from T0287.t04.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 2ayh 129 :GHEKVI T0287 147 :T 2ayh 136 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=21393 # 2c5qA.140.145 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 2c5qA 146 :AVVKAVGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21394 # 2d0oA.140.479 read from T0287.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 2d0oA 481 :SVQFFSTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=21395 # 1ru3A.140.340 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIEL 1ru3A 341 :MHVEF T0287 147 :TN 1ru3A 348 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21397 # 1bco.140.294 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1bco 542 :STVYCY T0287 147 :TN 1bco 549 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21399 # 1olzA.140.331 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 140 :SQIELY 1olzA 332 :TKWVRY T0287 147 :TN 1olzA 339 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21401 # 1rv9A.140.191 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELYG 1rv9A 192 :TAFEGIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21402 # 1hjrA.140.22 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1hjrA 23 :R T0287 142 :I 1hjrA 25 :L T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 3 number of extra gaps= 3 total=21405 # 1jiwI.140.65 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1jiwI 66 :A T0287 142 :IELYGTN 1jiwI 68 :IALLERG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21407 # 1r6wA.140.16 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 140 :S 1r6wA 15 :A T0287 142 :IE 1r6wA 17 :VV T0287 147 :TN 1r6wA 22 :RR Number of specific fragments extracted= 3 number of extra gaps= 1 total=21410 Number of alignments=1144 # 1ok7A.140.39 read from T0287.t04.many.frag # found chain 1ok7A in training set T0287 140 :SQIELYGTN 1ok7A 40 :GTLSLTGTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21411 # 1f00I.140.101 read from T0287.t04.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)G146 (1f00I)G765 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1f00I)G767 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELY 1f00I 759 :GNIEIV T0287 147 :T 1f00I 766 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=21413 # 1s3rA.140.269 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 140 :SQIELYGTN 1s3rA 267 :SPSALFGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21414 # 1xt5A.140.81 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1xt5A)V86 because D (zeta) conformation "forbidden" or filtered. T0287 141 :QIE 1xt5A 83 :RAS T0287 145 :YGTN 1xt5A 87 :ANLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21416 # 1xmtA.140.34 read from T0287.t04.many.frag # found chain 1xmtA in training set T0287 140 :SQIELYGTN 1xmtA 35 :KVMDLVHTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21417 # 2f15A.140.33 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 2f15A 101 :TKIPLI T0287 147 :TN 2f15A 108 :SH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21419 # 1gd0A.140.44 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)E143 (1gd0A)A48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 140 :SQI 1gd0A 45 :QLM T0287 144 :L 1gd0A 49 :F T0287 146 :GTN 1gd0A 51 :GSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=21422 # 1hbnB.140.4 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1hbnB 6 :DKVDLY T0287 147 :TN 1hbnB 13 :DR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21424 # 1wubA.140.84 read from T0287.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)T147 (1wubA)G92 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIELYG 1wubA 85 :TQIEPLG T0287 148 :N 1wubA 93 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=21426 # 2bjfA.140.160 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 2bjfA 161 :E T0287 142 :IELYGTN 2bjfA 163 :LNVFDNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21428 # 1xmkA.140.53 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)S140 (1xmkA)G341 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xmkA)Y344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xmkA)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 T0287 141 :QI 1xmkA 342 :DV T0287 144 :LY 1xmkA 345 :RQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=21430 # 1oygA.140.177 read from T0287.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)N148 (1oygA)E212 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1oygA 204 :S T0287 143 :ELYGT 1oygA 207 :NINGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21432 # 1ijqA.140.239 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ijqA)E623 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL T0287 148 :N 1ijqA 624 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=21435 # 1acc.140.537 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)N148 (1acc)D546 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1acc 538 :GNLQYQGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21436 # 1zpwX.140.70 read from T0287.t04.many.frag # found chain 1zpwX in template set T0287 140 :SQIELYGTN 1zpwX 71 :GQVEVLGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21437 # 1lpbA.140.24 read from T0287.t04.many.frag # found chain 1lpbA in template set T0287 140 :SQIELYGTN 1lpbA 25 :SNCCQHDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21438 # 1jiwI.140.12 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :SQIELY 1jiwI 13 :GQWTLQ T0287 148 :N 1jiwI 21 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21440 # 1w8kA.140.311 read from T0287.t04.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)S140 (1w8kA)K352 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1w8kA)K360 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1w8kA 353 :KCYIF T0287 147 :T 1w8kA 359 :T Number of specific fragments extracted= 2 number of extra gaps= 3 total=21442 # 1n9eA.140.743 read from T0287.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)Q141 (1n9eA)N745 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :S 1n9eA 744 :S T0287 142 :IELYGTN 1n9eA 746 :WEFYGND Number of specific fragments extracted= 2 number of extra gaps= 1 total=21444 # 2f6eA.140.18 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f6eA)R26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELY 2f6eA 21 :KNFYF Number of specific fragments extracted= 1 number of extra gaps= 2 total=21445 # 1ir6A.140.346 read from T0287.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0287)L144 (1ir6A)R390 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ir6A)G392 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQIE 1ir6A 386 :DLLL T0287 145 :Y 1ir6A 391 :Y T0287 147 :TN 1ir6A 393 :GH Number of specific fragments extracted= 3 number of extra gaps= 2 total=21448 # 2c5qA.141.146 read from T0287.t04.many.frag # found chain 2c5qA in template set T0287 141 :QIELYGTNL 2c5qA 147 :VVKAVGTNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21449 # 2d0oA.141.480 read from T0287.t04.many.frag # found chain 2d0oA in template set T0287 141 :QIELYGTNL 2d0oA 481 :SVQFFSTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21450 # 1ru3A.141.341 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 141 :QIELYGTNL 1ru3A 342 :HVEFGGGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21451 # 1bco.141.295 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 1bco 543 :TV T0287 144 :LY 1bco 546 :CY T0287 147 :TN 1bco 549 :LD Number of specific fragments extracted= 3 number of extra gaps= 3 total=21454 # 1jiwI.141.66 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1jiwI 68 :IALLERG Number of specific fragments extracted= 1 number of extra gaps= 2 total=21455 # 1ok7A.141.40 read from T0287.t04.many.frag # found chain 1ok7A in training set T0287 141 :QIELYGTNL 1ok7A 41 :TLSLTGTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21456 # 1olzA.141.332 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELY 1olzA 333 :KWVRY T0287 147 :TNL 1olzA 339 :GPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21458 # 1xmkA.141.54 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)E143 (1xmkA)Y344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xmkA)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 141 :QI 1xmkA 342 :DV T0287 144 :LY 1xmkA 345 :RQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=21460 # 1gd0A.141.45 read from T0287.t04.many.frag # found chain 1gd0A in training set T0287 141 :QIELYGTNL 1gd0A 46 :LMAFGGSSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21461 # 2bjfA.141.161 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 2bjfA 163 :LNVFDNNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21462 # 1lpbA.141.25 read from T0287.t04.many.frag # found chain 1lpbA in template set T0287 141 :QIELYGTNL 1lpbA 26 :NCCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21463 # 1s3rA.141.270 read from T0287.t04.many.frag # found chain 1s3rA in template set T0287 141 :QIELYGTNL 1s3rA 268 :PSALFGSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21464 # 1r6wA.141.17 read from T0287.t04.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 Warning: unaligning (T0287)N148 (1r6wA)R23 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIE 1r6wA 16 :GVV T0287 147 :T 1r6wA 22 :R T0287 149 :L 1r6wA 24 :L Number of specific fragments extracted= 3 number of extra gaps= 1 total=21467 Number of alignments=1145 # 1xmtA.141.35 read from T0287.t04.many.frag # found chain 1xmtA in training set T0287 141 :QIELYGTNL 1xmtA 36 :VMDLVHTYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21468 # 1pjxA.141.247 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)I249 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :L 1pjxA 256 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=21470 # 1acc.141.538 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1acc 539 :NL T0287 144 :LYGTNL 1acc 542 :YQGKDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21472 # 2f15A.141.34 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)Q141 (2f15A)K102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f15A)S108 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 T0287 142 :IELY 2f15A 103 :IPLI Number of specific fragments extracted= 1 number of extra gaps= 2 total=21473 # 1hbnB.141.5 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1hbnB)G15 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 1hbnB 7 :KV T0287 144 :LY 1hbnB 10 :LY T0287 147 :TN 1hbnB 13 :DR Number of specific fragments extracted= 3 number of extra gaps= 3 total=21476 # 1se8A.141.104 read from T0287.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)Q141 (1se8A)R105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1se8A)G110 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1se8A)Q112 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1se8A 106 :MEQL T0287 147 :T 1se8A 111 :T T0287 149 :L 1se8A 113 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=21479 # 1jiwI.141.13 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)Q14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 15 :WTLQ T0287 148 :NL 1jiwI 21 :EA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21481 # 1f00I.141.102 read from T0287.t04.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1f00I)T766 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QI 1f00I 760 :NI T0287 144 :LYG 1f00I 763 :IVG T0287 148 :NL 1f00I 767 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21484 # 1rv9A.141.192 read from T0287.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. T0287 141 :QI 1rv9A 193 :AF T0287 144 :LYG 1rv9A 196 :GIG T0287 148 :NL 1rv9A 200 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=21487 # 1xt5A.141.82 read from T0287.t04.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)L149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xt5A)P92 T0287 141 :QIELYGTN 1xt5A 83 :RASVANLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21488 # 1w8kA.141.312 read from T0287.t04.many.frag # found chain 1w8kA in training set T0287 141 :QIELYGTNL 1w8kA 353 :KCYIFNTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21489 # 1hjrA.141.23 read from T0287.t04.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)G146 (1hjrA)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1hjrA 24 :QL T0287 145 :Y 1hjrA 28 :L T0287 147 :T 1hjrA 30 :S T0287 149 :L 1hjrA 32 :C Number of specific fragments extracted= 4 number of extra gaps= 3 total=21493 # 1ijqA.141.240 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1ijqA 618 :VNLLAENL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21494 # 1v05A.141.39 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 141 :QIELYGTNL 1v05A 2669 :MVGVHGPKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21495 # 1gxrA.141.246 read from T0287.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)E143 (1gxrA)E682 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1gxrA)N687 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 1gxrA 680 :NV T0287 144 :LYGT 1gxrA 683 :VLHV T0287 149 :L 1gxrA 688 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=21498 # 1ttuA.141.227 read from T0287.t04.many.frag # found chain 1ttuA in template set T0287 141 :QIELYGTNL 1ttuA 414 :AFHASSTKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=21499 # 1txvA.141.265 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)Q141 (1txvA)A266 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1txvA 267 :VEILDSYY Number of specific fragments extracted= 1 number of extra gaps= 1 total=21500 # 1bco.142.296 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)N148 (1bco)D550 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGT 1bco 544 :VYCYTL T0287 150 :P 1bco 552 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=21502 # 2c5qA.142.147 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGT 2c5qA 148 :VKAVGT T0287 149 :LP 2c5qA 155 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21504 # 1ok7A.142.41 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1ok7A 42 :LSLTGTD T0287 150 :P 1ok7A 50 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21506 # 1ru3A.142.342 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IEL 1ru3A 343 :VEF T0287 146 :GTNLP 1ru3A 347 :GGKTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21508 # 1jiwI.142.67 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG T0287 150 :P 1jiwI 76 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=21511 # 1xmkA.142.55 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)G146 (1xmkA)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 142 :IELY 1xmkA 343 :VYRQ T0287 150 :P 1xmkA 351 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=21513 # 2d0oA.142.481 read from T0287.t04.many.frag # found chain 2d0oA in template set T0287 142 :IELYGTNLP 2d0oA 482 :VQFFSTPLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21514 # 1gttA.142.188 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)E143 (1gttA)R190 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1gttA 189 :V T0287 144 :LYGTNLP 1gttA 191 :VLAEGFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21516 # 1lpbA.142.26 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1lpbA 27 :CCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21517 # 1gd0A.142.46 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 142 :IEL 1gd0A 47 :MAF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21519 # 1jiwI.142.14 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 15 :WTLQ T0287 147 :TNLP 1jiwI 20 :DEAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21521 # 1pjxA.142.248 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :L 1pjxA 256 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=21523 # 1txvA.142.266 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 142 :IELY 1txvA 267 :VEIL T0287 147 :TN 1txvA 272 :SY T0287 150 :P 1txvA 275 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=21526 # 2f15A.142.35 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 142 :IELYGTN 2f15A 103 :IPLIKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=21527 # 1v05A.142.40 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 142 :IELYGTNLP 1v05A 2670 :VGVHGPKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21528 # 1acc.142.539 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 142 :I 1acc 540 :L T0287 144 :L 1acc 542 :Y T0287 146 :GTNLP 1acc 544 :GKDIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=21531 # 2bjfA.142.162 read from T0287.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)P150 (2bjfA)G171 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 2bjfA 163 :LNVFDNNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21532 # 1nqeA.142.549 read from T0287.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)E143 (1nqeA)V551 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1nqeA)T556 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :I 1nqeA 550 :A T0287 144 :LYGT 1nqeA 552 :AYPV T0287 149 :LP 1nqeA 557 :SH Number of specific fragments extracted= 3 number of extra gaps= 2 total=21535 # 1ijqA.142.241 read from T0287.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Y145 (1ijqA)L621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ijqA)N624 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ijqA)L626 because D (zeta) conformation "forbidden" or filtered. T0287 142 :IEL 1ijqA 618 :VNL T0287 147 :T 1ijqA 623 :E T0287 149 :L 1ijqA 625 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=21538 # 1olzA.142.333 read from T0287.t04.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)N148 (1olzA)P340 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELYGT 1olzA 334 :WVRYNG T0287 149 :LP 1olzA 341 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21540 # 1k3sA.142.69 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1k3sA 70 :IGADADNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21541 # 1gxrA.142.247 read from T0287.t04.many.frag # found chain 1gxrA in training set T0287 142 :IELYGTNLP 1gxrA 681 :VEVLHVNKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21542 # 1s3rA.142.271 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1s3rA)T277 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELYGT 1s3rA 269 :SALFGS T0287 149 :L 1s3rA 276 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=21544 # 1ttuA.142.228 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1ttuA 415 :F T0287 144 :LY 1ttuA 417 :AS T0287 147 :TNL 1ttuA 420 :TKW Number of specific fragments extracted= 3 number of extra gaps= 3 total=21547 # 1hbnB.142.6 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1hbnB 8 :VDLY T0287 147 :TNLP 1hbnB 13 :DRGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21549 # 1vh5A.142.117 read from T0287.t04.many.frag # found chain 1vh5A in training set Warning: unaligning (T0287)G146 (1vh5A)D120 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1vh5A 116 :IEIF T0287 147 :TNLP 1vh5A 121 :EKGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21551 # 1se8A.142.105 read from T0287.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)E143 (1se8A)E107 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1se8A 106 :M T0287 144 :LYGTNLP 1se8A 108 :QLGTQPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21553 # 1vgjA.142.77 read from T0287.t04.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)I78 Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF T0287 147 :T 1vgjA 83 :N Number of specific fragments extracted= 2 number of extra gaps= 3 total=21555 # 1yn3A.142.7 read from T0287.t04.many.frag # found chain 1yn3A in training set T0287 142 :IELYGTNLP 1yn3A 164 :ITVNGTSQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21556 # 1xi1A.142.291 read from T0287.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0287)G146 (1xi1A)E296 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1xi1A 292 :FELK T0287 147 :TNLP 1xi1A 297 :GYIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21558 # 1ru3A.143.343 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 143 :ELYGTNLPL 1ru3A 344 :EFGGGKTPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21559 # 1xmkA.143.56 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYG 1xmkA 344 :YRQG T0287 150 :PL 1xmkA 351 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21561 # 1ok7A.143.42 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGTN 1ok7A 43 :SLTGTD T0287 150 :P 1ok7A 50 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=21563 # 1bco.143.297 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELY 1bco 545 :YCY T0287 147 :TN 1bco 549 :LD T0287 150 :PL 1bco 552 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=21566 # 2c5qA.143.148 read from T0287.t04.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 143 :ELYGT 2c5qA 149 :KAVGT T0287 149 :LPL 2c5qA 155 :VQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21568 # 1gd0A.143.47 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 143 :EL 1gd0A 48 :AF T0287 146 :GTNLPL 1gd0A 51 :GSSEPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21570 # 1gttA.143.189 read from T0287.t04.many.frag # found chain 1gttA in training set T0287 143 :ELYGTNLPL 1gttA 190 :RVLAEGFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21571 # 1lpbA.143.27 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)E143 (1lpbA)C28 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :L 1lpbA 36 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=21573 # 1v05A.143.41 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 143 :ELYGTNLPL 1v05A 2671 :GVHGPKTPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21574 # 1jiwI.143.15 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1jiwI)E21 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELY 1jiwI 16 :TLQ T0287 149 :LPL 1jiwI 22 :APA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21576 # 1jiwI.143.68 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1jiwI 69 :ALLERG T0287 150 :PL 1jiwI 76 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21578 # 2f15A.143.36 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 143 :ELY 2f15A 104 :PLI T0287 147 :T 2f15A 108 :S T0287 151 :L 2f15A 112 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=21581 # 2d0oA.143.482 read from T0287.t04.many.frag # found chain 2d0oA in template set T0287 143 :ELYGTNLPL 2d0oA 483 :QFFSTPLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21582 # 1acc.143.540 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1acc 542 :Y T0287 146 :GTNLPL 1acc 544 :GKDITE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21584 # 1ttuA.143.229 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ttuA)T420 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYG 1ttuA 417 :ASS T0287 148 :NL 1ttuA 421 :KW T0287 151 :L 1ttuA 424 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=21587 # 1k3sA.143.70 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1k3sA 71 :GADADNT T0287 151 :L 1k3sA 79 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=21589 # 1vgjA.143.78 read from T0287.t04.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)E143 (1vgjA)G79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1vgjA 80 :VF T0287 147 :T 1vgjA 83 :N T0287 151 :L 1vgjA 87 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=21592 # 2evrA.143.177 read from T0287.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 2evrA 166 :VFFGTSQ T0287 151 :L 2evrA 174 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=21594 # 1nqeA.143.550 read from T0287.t04.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1nqeA)T556 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELY 1nqeA 551 :VAY T0287 147 :T 1nqeA 555 :V T0287 149 :LPL 1nqeA 557 :SHL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21597 # 1txvA.143.267 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1txvA 268 :EILDSY T0287 150 :PL 1txvA 275 :QR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21599 # 1pjxA.143.249 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)E143 (1pjxA)E250 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 144 :LYG 1pjxA 251 :VFG T0287 149 :LPL 1pjxA 256 :GGQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=21601 # 2fj8A.143.72 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 T0287 143 :ELY 2fj8A 73 :ICT T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21603 # 1hbnB.143.7 read from T0287.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELY 1hbnB 9 :DLY T0287 147 :TNLPL 1hbnB 13 :DRGNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21605 # 1yn3A.143.8 read from T0287.t04.many.frag # found chain 1yn3A in training set T0287 143 :ELYGTNLPL 1yn3A 165 :TVNGTSQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21606 # 1ejfA.143.64 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)E143 (1ejfA)K65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ejfA 66 :HKRTDR T0287 151 :L 1ejfA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=21608 # 2f6eA.143.21 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYG 2f6eA 23 :FYFR T0287 149 :LPL 2f6eA 29 :LPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21610 # 1r5mA.143.132 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)L149 (1r5mA)G251 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1r5mA 245 :RLWNKT T0287 150 :PL 1r5mA 252 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21612 # 1cfb.143.111 read from T0287.t04.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)G146 (1cfb)G724 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)N728 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELY 1cfb 721 :VGQ T0287 147 :TNL 1cfb 725 :TEP T0287 151 :L 1cfb 729 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=21615 # 1i0vA.143.77 read from T0287.t04.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)G146 (1i0vA)N81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1i0vA)N83 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELY 1i0vA 78 :VVF T0287 147 :T 1i0vA 82 :E T0287 149 :LPL 1i0vA 84 :NQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21618 # 1tif.143.45 read from T0287.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0287)P150 (1tif)K53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1tif)P54 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1tif 46 :VLVAPNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21619 # 1gttA.144.190 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGT 1gttA 191 :VLAE T0287 149 :LPLL 1gttA 196 :FPPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21621 # 1xmkA.144.57 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 144 :LYG 1xmkA 345 :RQG T0287 150 :PLL 1xmkA 351 :PIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=21623 # 1ru3A.144.344 read from T0287.t04.many.frag # found chain 1ru3A in template set T0287 144 :LYGTNLPLL 1ru3A 345 :FGGGKTPSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21624 # 1gd0A.144.48 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :L 1gd0A 49 :F T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :L 1gd0A 57 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=21627 # 1lpbA.144.28 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :LL 1lpbA 36 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21629 # 1v05A.144.42 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 144 :LYGTNLPLL 1v05A 2672 :VHGPKTPCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21630 # 1jiwI.144.16 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1jiwI)E21 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LYG 1jiwI 17 :LQQ T0287 149 :LPLL 1jiwI 22 :APAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21632 # 1k3sA.144.71 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 1k3sA 72 :ADADNT T0287 151 :LL 1k3sA 79 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21634 # 1ok7A.144.43 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTN 1ok7A 44 :LTGTD T0287 150 :P 1ok7A 50 :E T0287 152 :L 1ok7A 52 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=21637 # 1bco.144.298 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGTN 1bco 546 :CYTLD T0287 150 :PLL 1bco 552 :RFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21639 # 1ttuA.144.230 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)L144 (1ttuA)A417 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1ttuA 418 :S T0287 147 :TNL 1ttuA 420 :TKW T0287 151 :LL 1ttuA 424 :AF Number of specific fragments extracted= 3 number of extra gaps= 3 total=21642 # 2c5qA.144.149 read from T0287.t04.many.frag # found chain 2c5qA in template set T0287 144 :LYGTNLPLL 2c5qA 150 :AVGTNVQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21643 # 1jiwI.144.69 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 1jiwI 70 :LL T0287 147 :TN 1jiwI 73 :RG T0287 150 :PLL 1jiwI 76 :LTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21646 # 1acc.144.541 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1acc 542 :Y T0287 146 :GTNLPLL 1acc 544 :GKDITEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21648 # 2fj8A.144.73 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 T0287 144 :LYGTN 2fj8A 74 :CTRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21649 # 1wnyA.144.68 read from T0287.t04.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)G146 (1wnyA)G270 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LY 1wnyA 268 :LL T0287 147 :TNLPLL 1wnyA 271 :EGTPVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21651 # 2f15A.144.37 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 144 :LY 2f15A 105 :LI T0287 147 :T 2f15A 108 :S T0287 151 :LL 2f15A 112 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21654 # 2d0oA.144.483 read from T0287.t04.many.frag # found chain 2d0oA in template set T0287 144 :LYGTNLPLL 2d0oA 484 :FFSTPLPPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21655 # 1nh1A.144.167 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)Y145 (1nh1A)H169 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1nh1A 168 :L T0287 146 :GTNLPLL 1nh1A 170 :GNVIPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21657 # 2evrA.144.178 read from T0287.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 2evrA 167 :FFGTSQ T0287 151 :LL 2evrA 174 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21659 # 2jdxA.144.30 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)Y145 (2jdxA)Y69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :L 2jdxA 68 :S T0287 147 :TNLPLL 2jdxA 71 :EWDPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21661 # 1txvA.144.268 read from T0287.t04.many.frag # found chain 1txvA in template set T0287 144 :LYGTNLPLL 1txvA 269 :ILDSYYQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21662 # 1dmgA.144.167 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 144 :LYGTNLPLL 1dmgA 169 :LSGRNLPDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21663 # 1i0vA.144.78 read from T0287.t04.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 144 :LYGTN 1i0vA 79 :VFNEN T0287 150 :PLL 1i0vA 85 :QLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21665 # 1ejfA.144.65 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 1ejfA 66 :HK T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :LL 1ejfA 73 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21668 # 2f6eA.144.22 read from T0287.t04.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)N148 (2f6eA)G28 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGT 2f6eA 24 :YFRN T0287 149 :LPLL 2f6eA 29 :LPQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21670 # 1pjxA.144.250 read from T0287.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)P150 (1pjxA)G257 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1pjxA 251 :VFG T0287 149 :L 1pjxA 256 :G T0287 151 :LL 1pjxA 258 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=21673 # 1h4aX.144.155 read from T0287.t04.many.frag # found chain 1h4aX in training set T0287 144 :LYGTNLPLL 1h4aX 157 :WGATNARVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21674 # 1yn3A.144.9 read from T0287.t04.many.frag # found chain 1yn3A in training set Warning: unaligning (T0287)G146 (1yn3A)G168 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LY 1yn3A 166 :VN T0287 147 :TNLPLL 1yn3A 169 :TSQNIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21676 # 1r5mA.144.133 read from T0287.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)L149 (1r5mA)G251 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGTN 1r5mA 246 :LWNKT T0287 150 :PLL 1r5mA 252 :ALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21678 # 1gttA.145.191 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1gttA 192 :L T0287 147 :TNLPLLK 1gttA 194 :EGFPPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21680 # 1k3sA.145.72 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGT 1k3sA 73 :DAD T0287 149 :L 1k3sA 77 :T T0287 151 :LLK 1k3sA 79 :LVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21683 # 1xmkA.145.58 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1xmkA)H354 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YG 1xmkA 346 :QG T0287 150 :PLL 1xmkA 351 :PIW Number of specific fragments extracted= 2 number of extra gaps= 2 total=21685 # 1ru3A.145.345 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 145 :Y 1ru3A 346 :G T0287 147 :TNLPLLK 1ru3A 348 :GKTPSFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21687 # 1gd0A.145.49 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1gd0A 51 :GSSEP T0287 152 :LK 1gd0A 57 :AL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21689 # 1lpbA.145.29 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1lpbA 30 :HDTIL T0287 151 :LLK 1lpbA 36 :LSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21691 # 1nh1A.145.168 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)Y145 (1nh1A)H169 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1nh1A 170 :GNVIPLNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21692 # 1jiwI.145.17 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 145 :YG 1jiwI 18 :QQ T0287 148 :NLPLLK 1jiwI 21 :EAPAIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21694 # 1wnyA.145.69 read from T0287.t04.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)K153 (1wnyA)K277 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1wnyA 269 :LGEGTPVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21695 # 1jiwI.145.70 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :Y 1jiwI 71 :L T0287 147 :TN 1jiwI 73 :RG T0287 150 :PLLK 1jiwI 76 :LTLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=21698 # 1bco.145.299 read from T0287.t04.many.frag # found chain 1bco in template set T0287 145 :YGTNLPLLK 1bco 547 :YTLDGRFIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21699 # 1v05A.145.43 read from T0287.t04.many.frag # found chain 1v05A in training set T0287 145 :YGTNLPLLK 1v05A 2673 :HGPKTPCEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21700 # 2fj8A.145.74 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 145 :YGTN 2fj8A 75 :TRSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21701 # 2jdxA.145.31 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 2jdxA 69 :Y T0287 147 :TNLPLLK 2jdxA 71 :EWDPLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21703 # 1ttuA.145.231 read from T0287.t04.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ttuA)T420 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1ttuA 418 :S T0287 148 :NL 1ttuA 421 :KW T0287 151 :LLK 1ttuA 424 :AFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=21706 # 2f15A.145.38 read from T0287.t04.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 145 :YGT 2f15A 106 :IKS T0287 151 :LLK 2f15A 112 :FVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21708 # 1tul.145.75 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1tul 76 :VQN T0287 151 :LLK 1tul 82 :DLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21710 # 1ow1A.145.147 read from T0287.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)N148 (1ow1A)N3620 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1ow1A 3617 :PGS T0287 149 :LPLLK 1ow1A 3621 :QPAYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21712 # 1gsa.145.214 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 145 :YGTNLPLLK 1gsa 215 :DGEPVPYCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21713 # 1t6aA.145.61 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)G146 (1t6aA)G62 because S (epsilon) conformation "forbidden" or filtered. T0287 145 :Y 1t6aA 61 :D T0287 147 :TNLPLLK 1t6aA 63 :RLYKGMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21715 # 1acc.145.542 read from T0287.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1acc)D551 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1acc 544 :GKDITEF Number of specific fragments extracted= 1 number of extra gaps= 2 total=21716 # 1ok7A.145.44 read from T0287.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1ok7A 45 :TGTDLE T0287 152 :LK 1ok7A 52 :EM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21718 # 1cfb.145.133 read from T0287.t04.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)P150 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1cfb 743 :NAPNF T0287 151 :LLK 1cfb 749 :YYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21720 # 1txvA.145.269 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1txvA 270 :LDSYYQRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21721 # 1i0vA.145.79 read from T0287.t04.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)N148 (1i0vA)N83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 145 :YGT 1i0vA 80 :FNE T0287 150 :PLLK 1i0vA 85 :QLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21723 # 1l9vA.145.179 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)G146 (1l9vA)D181 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1l9vA 180 :L T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLK 1l9vA 186 :EYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=21726 # 1ejfA.145.66 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1ejfA 67 :KRTDR T0287 151 :LLK 1ejfA 73 :ILC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21728 # 1yq2A.145.936 read from T0287.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :Y 1yq2A 936 :D T0287 147 :T 1yq2A 938 :A T0287 149 :LPLLK 1yq2A 940 :APWLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=21731 # 2biqA.145.151 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)Y145 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2biqA)G245 T0287 146 :GTNLPLLK 2biqA 246 :MNRSPILT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21732 # 2evrA.145.179 read from T0287.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 2evrA 168 :FGTSQ T0287 151 :LLK 2evrA 174 :ATH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21734 # 1k3sA.146.73 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNL 1k3sA 74 :ADNT T0287 151 :LLKL 1k3sA 79 :LVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21736 # 1gttA.146.192 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gttA)E200 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GT 1gttA 193 :AE T0287 149 :LPLL 1gttA 196 :FPPL T0287 154 :L 1gttA 201 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=21739 # 1l9vA.146.180 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNL 1l9vA 181 :DQNF T0287 151 :LLKL 1l9vA 186 :EYKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21741 # 1xmkA.146.59 read from T0287.t04.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)G146 (1xmkA)G347 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 150 :PLLKL 1xmkA 351 :PIWHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21742 # 1gd0A.146.50 read from T0287.t04.many.frag # found chain 1gd0A in training set T0287 146 :GTNLPLLKL 1gd0A 51 :GSSEPCALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21743 # 1ru3A.146.346 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :KL 1ru3A 354 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21745 # 1ow1A.146.148 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 146 :GTNLPLLKL 1ow1A 3618 :GSNQPAYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21746 # 1kjlA.146.34 read from T0287.t04.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)G146 (1kjlA)K139 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1kjlA 140 :PNAN T0287 152 :LKL 1kjlA 145 :IAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21748 # 2b8mA.146.87 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N87 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=21749 # 1lpbA.146.30 read from T0287.t04.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1lpbA 31 :DTIL T0287 151 :LLKL 1lpbA 36 :LSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21751 # 2biqA.146.152 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 148 :NLPLLKL 2biqA 248 :RSPILTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21753 # 1k8wA.146.298 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTN 1k8wA 286 :GEN T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :L 1k8wA 294 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=21756 # 1nh1A.146.169 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 146 :GTNLPLLKL 1nh1A 170 :GNVIPLNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21757 # 1gsa.146.215 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 146 :GTNLPLLKL 1gsa 216 :GEPVPYCLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21758 # 1jiwI.146.71 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :TN 1jiwI 73 :RG T0287 150 :PLLKL 1jiwI 76 :LTLML Number of specific fragments extracted= 2 number of extra gaps= 2 total=21760 # 1jiwI.146.18 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 146 :G 1jiwI 19 :Q T0287 148 :NLPLLKL 1jiwI 21 :EAPAICH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21762 # 1ospO.146.74 read from T0287.t04.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)L149 (1ospO)L94 because L (left) conformation "forbidden" or filtered. T0287 146 :GTN 1ospO 91 :SDD T0287 150 :PLLKL 1ospO 95 :GQTTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21764 # 1uv4A.146.30 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1uv4A 31 :LTEERGL T0287 154 :L 1uv4A 39 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=21766 # 1bco.146.300 read from T0287.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1bco 549 :LD T0287 150 :PLL 1bco 552 :RFI T0287 154 :L 1bco 556 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=21769 # 1tul.146.76 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1tul 77 :QN T0287 151 :LLKL 1tul 82 :DLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21771 # 1o59A.146.118 read from T0287.t04.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 146 :GTNLPL 1o59A 107 :GNHAPF T0287 154 :L 1o59A 115 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=21773 # 1yq2A.146.937 read from T0287.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 146 :GT 1yq2A 937 :RA T0287 149 :LPLLKL 1yq2A 940 :APWLRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21775 # 2fj8A.146.75 read from T0287.t04.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)N148 (2fj8A)N78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 146 :GT 2fj8A 76 :RS T0287 154 :L 2fj8A 84 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=21777 # 1t6aA.146.62 read from T0287.t04.many.frag # found chain 1t6aA in template set T0287 146 :GTNLPLLKL 1t6aA 62 :GRLYKGMAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21778 # 1wnyA.146.70 read from T0287.t04.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)G146 (1wnyA)G270 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wnyA)K277 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLL 1wnyA 271 :EGTPVL T0287 154 :L 1wnyA 278 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=21780 # 1jl0A.146.233 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 146 :GTNLPLLKL 1jl0A 234 :KSDGTYWTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21781 # 1txvA.146.270 read from T0287.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPLL 1txvA 271 :DSYYQRL T0287 154 :L 1txvA 279 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=21783 # 1p90A.146.23 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1p90A 122 :FGSCL T0287 152 :LKL 1p90A 128 :FLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21785 # 1ejfA.146.67 read from T0287.t04.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1ejfA)C76 because D (zeta) conformation "forbidden" or filtered. T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :LLK 1ejfA 73 :ILC Number of specific fragments extracted= 2 number of extra gaps= 3 total=21787 # 1v4pA.146.96 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)G146 (1v4pA)P97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKL 1v4pA 102 :ILKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21789 # 1gttA.147.193 read from T0287.t04.many.frag # found chain 1gttA in training set T0287 147 :TNLPLLKLF 1gttA 194 :EGFPPLENP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21790 # 2b8mA.147.88 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=21791 # 1nh1A.147.170 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)K153 (1nh1A)T177 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1nh1A 171 :NVIPLN T0287 154 :LF 1nh1A 178 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21793 # 1l9vA.147.181 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N148 (1l9vA)N183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :T 1l9vA 182 :Q T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLF 1l9vA 186 :EYKVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=21796 # 2biqA.147.153 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLF 2biqA 249 :SPILTII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21797 # 1k3sA.147.74 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :T 1k3sA 75 :D T0287 149 :L 1k3sA 77 :T T0287 151 :LLKLF 1k3sA 79 :LVALY Number of specific fragments extracted= 3 number of extra gaps= 2 total=21800 # 1ow1A.147.149 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 147 :TNLPLLKLF 1ow1A 3619 :SNQPAYVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21801 # 1uv4A.147.31 read from T0287.t04.many.frag # found chain 1uv4A in training set T0287 147 :TNLPLLKLF 1uv4A 32 :TEERGLRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21802 # 1k8wA.147.299 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1k8wA 287 :EN T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LF 1k8wA 294 :MG Number of specific fragments extracted= 3 number of extra gaps= 2 total=21805 # 1kjlA.147.35 read from T0287.t04.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1kjlA 140 :PNAN T0287 152 :LKLF 1kjlA 145 :IALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21807 # 1v4pA.147.97 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKLF 1v4pA 102 :ILKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21809 # 1ospO.147.75 read from T0287.t04.many.frag # found chain 1ospO in template set T0287 147 :TNLPLLKLF 1ospO 92 :DDLGQTTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21810 # 1jl0A.147.234 read from T0287.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :TN 1jl0A 235 :SD T0287 150 :PLLKLF 1jl0A 238 :TYWTIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21812 # 2czrA.147.66 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)N148 (2czrA)D60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2czrA)G63 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :T 2czrA 59 :K T0287 149 :L 2czrA 61 :V T0287 152 :LKLF 2czrA 64 :IHIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21815 # 1gsa.147.216 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 147 :TNLPLLKLF 1gsa 217 :EPVPYCLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21816 # 1fjgP.147.11 read from T0287.t04.many.frag # found chain 1fjgP in template set T0287 147 :TNLPLLKLF 1fjgP 12 :KHNPHYRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21817 # 1jiwI.147.19 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 147 :TNLPLLKLF 1jiwI 20 :DEAPAICHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21818 # 1gd0A.147.51 read from T0287.t04.many.frag # found chain 1gd0A in training set T0287 147 :TNLPLLKLF 1gd0A 52 :SSEPCALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21819 # 1t6aA.147.63 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1t6aA 63 :RLYK T0287 153 :KLF 1t6aA 69 :AIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21821 # 1cid.147.123 read from T0287.t04.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 T0287 147 :TNL 1cid 124 :PTS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21823 # 1y12A.147.79 read from T0287.t04.many.frag # found chain 1y12A in template set T0287 147 :TNLPLLKLF 1y12A 77 :KHYPQAKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21824 # 1tul.147.77 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1tul 78 :N T0287 151 :LLKLF 1tul 82 :DLNAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21826 # 1o59A.147.119 read from T0287.t04.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 147 :TNLPL 1o59A 108 :NHAPF T0287 154 :LF 1o59A 115 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21828 # 2a2cA.147.421 read from T0287.t04.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2a2cA)G403 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. T0287 149 :L 2a2cA 404 :W T0287 151 :LLKLF 2a2cA 406 :GCTVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=21830 # 2a8eA.147.164 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2a8eA)C171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 2a8eA 165 :KKA T0287 151 :LL 2a8eA 169 :LL T0287 155 :F 2a8eA 173 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=21833 # 1p90A.147.24 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1p90A 123 :GSCL T0287 152 :LKLF 1p90A 128 :FLVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21835 # 1ysqA.147.141 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)T147 (1ysqA)G140 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPL 1ysqA 141 :RVPY T0287 153 :KLF 1ysqA 146 :VSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21837 # 1i4wA.147.248 read from T0287.t04.many.frag # found chain 1i4wA in template set T0287 147 :TNLPLLKLF 1i4wA 237 :TKGKPIALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21838 # 1ru3A.147.347 read from T0287.t04.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ru3A)E354 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPL 1ru3A 348 :GKTPS T0287 154 :LF 1ru3A 355 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21840 # 1yq2A.147.938 read from T0287.t04.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1yq2A 938 :A T0287 149 :LPLLKLF 1yq2A 940 :APWLRID Number of specific fragments extracted= 2 number of extra gaps= 1 total=21842 # 2b8mA.148.89 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :V 2b8mA 97 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=21844 # 1nh1A.148.171 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 148 :NLPLLKLFV 1nh1A 172 :VIPLNTFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21845 # 1gttA.148.194 read from T0287.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gttA)E200 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :LPLL 1gttA 196 :FPPL T0287 154 :LFV 1gttA 201 :NPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21847 # 1l9vA.148.182 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NL 1l9vA 183 :NF T0287 151 :LLKLFV 1l9vA 186 :EYKVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21849 # 2biqA.148.154 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 2biqA 249 :SPILTIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21850 # 1uv4A.148.32 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 148 :NLP 1uv4A 33 :EER T0287 152 :LKLFV 1uv4A 37 :LRVLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21852 # 1ow1A.148.150 read from T0287.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)K153 (1ow1A)V3625 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLPLL 1ow1A 3620 :NQPAY T0287 154 :LFV 1ow1A 3626 :LQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21854 # 1jl0A.148.235 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 148 :NLPLLKLFV 1jl0A 236 :DGTYWTIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21855 # 1k8wA.148.300 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPLL 1k8wA 288 :NGKFI T0287 154 :LFV 1k8wA 294 :MGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21857 # 2a2cA.148.422 read from T0287.t04.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 T0287 149 :LPLLKLFV 2a2cA 404 :WGGCTVSM Number of specific fragments extracted= 1 number of extra gaps= 1 total=21858 # 1gsa.148.217 read from T0287.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1gsa 219 :VPYCLARI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21859 # 1k3sA.148.75 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LLKLFV 1k3sA 79 :LVALYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=21861 # 1kjlA.148.36 read from T0287.t04.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLP 1kjlA 141 :NAN T0287 152 :LKLFV 1kjlA 145 :IALDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21863 # 1fjgP.148.12 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)N148 (1fjgP)H13 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1fjgP 14 :NPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21864 # 1vr8A.148.56 read from T0287.t04.many.frag # found chain 1vr8A in training set T0287 148 :NLPLLKLFV 1vr8A 69 :EYGPVFLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21865 # 1v4pA.148.98 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 1v4pA 99 :DV T0287 151 :LLKLFV 1v4pA 102 :ILKVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21867 # 1cid.148.124 read from T0287.t04.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 T0287 148 :NL 1cid 125 :TS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21869 # 1tul.148.78 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1tul)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1tul 82 :DL T0287 154 :LFV 1tul 85 :AIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=21871 # 2btiA.148.27 read from T0287.t04.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)L149 (2btiA)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 148 :N 2btiA 26 :K T0287 151 :LLKLFV 2btiA 29 :QVRIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21873 # 1i4wA.148.249 read from T0287.t04.many.frag # found chain 1i4wA in template set T0287 148 :NLPLLKLFV 1i4wA 238 :KGKPIALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21874 # 2czrA.148.67 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2czrA)G63 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2czrA)H65 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NL 2czrA 60 :DV T0287 152 :L 2czrA 64 :I T0287 154 :LFV 2czrA 66 :IVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21877 # 1ospO.148.76 read from T0287.t04.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)L149 (1ospO)L94 because L (left) conformation "forbidden" or filtered. T0287 148 :N 1ospO 93 :D T0287 150 :PLLKLFV 1ospO 95 :GQTTLEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21879 # 1gd0A.148.52 read from T0287.t04.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLP 1gd0A 53 :SEP T0287 152 :LKLFV 1gd0A 57 :ALCSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21881 # 1y12A.148.80 read from T0287.t04.many.frag # found chain 1y12A in template set Warning: unaligning (T0287)N148 (1y12A)H78 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1y12A 79 :YPQAKLTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21882 # 2a8eA.148.165 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 2a8eA 166 :KA T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FV 2a8eA 173 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=21885 # 1f8eA.148.105 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)P150 (1f8eA)T188 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 1f8eA 186 :GK T0287 151 :LLKLFV 1f8eA 189 :RMSICI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21887 # 1jiwI.148.20 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 148 :NLPLLKLFV 1jiwI 21 :EAPAICHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21888 # 1sqwA.148.136 read from T0287.t04.many.frag # found chain 1sqwA in template set Warning: unaligning (T0287)L149 (1sqwA)D138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1sqwA)G142 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :N 1sqwA 137 :A T0287 150 :PLL 1sqwA 139 :IPL T0287 154 :LFV 1sqwA 143 :FGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21891 # 1vs0A.148.209 read from T0287.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1vs0A)L664 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LL 1vs0A 662 :SL T0287 154 :LFV 1vs0A 665 :MGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21893 # 1ysqA.148.142 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPL 1ysqA 141 :RVPY T0287 153 :KLFV 1ysqA 146 :VSIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21895 # 1nh1A.149.172 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 149 :LPLLKLFVM 1nh1A 173 :IPLNTFRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21896 # 1l9vA.149.183 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFVM 1l9vA 186 :EYKVTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21898 # 2b8mA.149.90 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :VM 2b8mA 97 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21900 # 1uv4A.149.33 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1uv4A 34 :ERGLRVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21901 # 2biqA.149.155 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 149 :LPLLKLFVM 2biqA 249 :SPILTIITL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21902 # 1vr8A.149.57 read from T0287.t04.many.frag # found chain 1vr8A in training set T0287 149 :LPLLKLFVM 1vr8A 70 :YGPVFLYVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21903 # 1ow1A.149.151 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 149 :LPLLKLFVM 1ow1A 3621 :QPAYVLQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21904 # 1k3sA.149.76 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LLK 1k3sA 79 :LVA T0287 155 :FVM 1k3sA 83 :YRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21907 # 1jl0A.149.236 read from T0287.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1jl0A)T241 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1jl0A 238 :TYW T0287 154 :LFVM 1jl0A 242 :IAIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=21909 # 1fjgP.149.13 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)L149 (1fjgP)N14 because D (zeta) conformation "forbidden" or filtered. T0287 150 :PLLKLFVM 1fjgP 15 :PHYRIVVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21910 # 1gsa.149.218 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 149 :LPLLKLFVM 1gsa 219 :VPYCLARIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21911 # 1gttA.149.195 read from T0287.t04.many.frag # found chain 1gttA in training set T0287 149 :LPLLKLFVM 1gttA 196 :FPPLENPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21912 # 2a8eA.149.166 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVM 2a8eA 173 :IQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21915 # 1no5A.149.43 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)K153 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLL 1no5A 44 :YSDL T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=21917 # 1v4pA.149.99 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 1v4pA 100 :V T0287 151 :LLKLFVM 1v4pA 102 :ILKVVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21919 # 2btiA.149.28 read from T0287.t04.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 2btiA 27 :G T0287 151 :LLKLFVM 2btiA 29 :QVRIGVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21921 # 1p90A.149.26 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1p90A)L129 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LP 1p90A 125 :CL T0287 152 :L 1p90A 128 :F T0287 154 :LFVM 1p90A 130 :VYQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21924 # 1jiwI.149.21 read from T0287.t04.many.frag # found chain 1jiwI in training set T0287 149 :LPLLKLFVM 1jiwI 22 :APAICHLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21925 # 1tul.149.79 read from T0287.t04.many.frag # found chain 1tul in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1tul)N84 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1tul 82 :DL T0287 154 :LFVM 1tul 85 :AIMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=21927 # 1i4wA.149.250 read from T0287.t04.many.frag # found chain 1i4wA in template set T0287 149 :LPLLKLFVM 1i4wA 239 :GKPIALVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=21928 # 1k8wA.149.301 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1k8wA)I297 because P (beta_P) conformation "forbidden" or filtered. T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LFV 1k8wA 294 :MGE Number of specific fragments extracted= 2 number of extra gaps= 3 total=21930 # 2a2cA.149.423 read from T0287.t04.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2a2cA)G405 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLFVM 2a2cA 406 :GCTVSMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21931 # 1vl7A.149.75 read from T0287.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)K153 (1vl7A)N68 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLL 1vl7A 64 :NPLV T0287 154 :LFVM 1vl7A 69 :VLFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21933 # 1cid.149.125 read from T0287.t04.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K134 T0287 149 :L 1cid 126 :S T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21935 # 1vs0A.149.210 read from T0287.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVM 1vs0A 662 :SLLMGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21936 # 1ftrA.149.69 read from T0287.t04.many.frag # found chain 1ftrA in training set T0287 149 :LPLLKLFVM 1ftrA 70 :RPGVTIMIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21937 # 1ry9A.149.107 read from T0287.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ry9A)L100 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :L 1ry9A 96 :E T0287 151 :LL 1ry9A 98 :LQ T0287 154 :LFVM 1ry9A 101 :RVVI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21940 # 1k2xA.149.77 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k2xA 79 :T T0287 151 :LLKLFVM 1k2xA 81 :ELDACVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21942 # 1kjlA.149.37 read from T0287.t04.many.frag # found chain 1kjlA in template set T0287 149 :LPLLKLFVM 1kjlA 142 :ANRIALDFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21943 # 1vqoS.149.59 read from T0287.t04.many.frag # found chain 1vqoS in template set Warning: unaligning (T0287)P150 (1vqoS)G60 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :L 1vqoS 59 :D T0287 151 :LLKLFVM 1vqoS 61 :EKKAVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21945 # 1nh1A.150.173 read from T0287.t04.many.frag # found chain 1nh1A in template set T0287 150 :PLLKLFVMT 1nh1A 174 :PLNTFRVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21946 # 1l9vA.150.184 read from T0287.t04.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1l9vA 186 :EYKVTLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21947 # 2biqA.150.156 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 150 :PLLKLFVMT 2biqA 250 :PILTIITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21948 # 1uv4A.150.34 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1uv4A 35 :R T0287 152 :LKLFV 1uv4A 37 :LRVLK T0287 158 :T 1uv4A 43 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=21951 # 1vr8A.150.58 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)P150 (1vr8A)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1vr8A 72 :PVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21952 # 2b8mA.150.91 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 150 :PLLK 2b8mA 91 :DILE T0287 156 :VMT 2b8mA 97 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21954 # 1k3sA.150.77 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1k3sA 79 :LVALYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=21955 # 1ry9A.150.108 read from T0287.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1ry9A 98 :LQLRVVIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21956 # 2a8eA.150.167 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2a8eA 169 :LLCGIQLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=21957 # 1ow1A.150.152 read from T0287.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)K153 (1ow1A)V3625 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1ow1A 3622 :PAY T0287 154 :LFVMT 1ow1A 3626 :LQIFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21959 # 1fjgP.150.14 read from T0287.t04.many.frag # found chain 1fjgP in template set T0287 150 :PLLKLFVMT 1fjgP 15 :PHYRIVVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21960 # 1gsa.150.219 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 150 :PLLKLFVMT 1gsa 220 :PYCLARIPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21961 # 1no5A.150.44 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 T0287 150 :PLLKLFVM 1no5A 45 :SDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21962 # 1p90A.150.27 read from T0287.t04.many.frag # found chain 1p90A in training set T0287 150 :PLLKLFVMT 1p90A 126 :LRFLVYQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21963 # 1vl7A.150.76 read from T0287.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)K153 (1vl7A)N68 because P (beta_P) conformation "forbidden" or filtered. T0287 150 :PLL 1vl7A 65 :PLV T0287 154 :LFVMT 1vl7A 69 :VLFVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21965 # 1g60A.150.115 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1g60A)Q116 T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21966 # 1v4pA.150.100 read from T0287.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21967 # 1jl0A.150.237 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 150 :PLLKLFVMT 1jl0A 238 :TYWTIAITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21968 # 1k8wA.150.302 read from T0287.t04.many.frag # found chain 1k8wA in template set T0287 150 :PLLKLFVMT 1k8wA 290 :KFIGMGEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=21969 # 1ftrA.150.70 read from T0287.t04.many.frag # found chain 1ftrA in training set T0287 150 :PLLKLFVMT 1ftrA 71 :PGVTIMIGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21970 # 1jiwI.150.22 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)K153 (1jiwI)C26 because E (beta_S) conformation "forbidden" or filtered. T0287 150 :PLL 1jiwI 23 :PAI T0287 154 :LFVMT 1jiwI 27 :HLELR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21972 # 1t6aA.150.66 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1t6aA 66 :K T0287 152 :LKLFVMT 1t6aA 68 :MAISVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21974 # 1vs0A.150.211 read from T0287.t04.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1vs0A 663 :LLMGIPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21975 # 2btiA.150.29 read from T0287.t04.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2btiA 29 :QVRIGVNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21976 # 1k2xA.150.78 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMT 1k2xA 85 :CVMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21978 # 1wvhA.150.107 read from T0287.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)P150 (1wvhA)N1712 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1wvhA)E1719 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1wvhA 1713 :VCHLFA T0287 158 :T 1wvhA 1720 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=21980 # 1w0pA.150.712 read from T0287.t04.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)P150 (1w0pA)Q713 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1w0pA 714 :NLGLWFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=21981 # 2jdxA.150.36 read from T0287.t04.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)K153 (2jdxA)E77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2jdxA)V78 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLL 2jdxA 74 :PLE T0287 155 :FVMT 2jdxA 79 :IVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21983 # 1ysqA.150.144 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PL 1ysqA 143 :PY T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :T 1ysqA 151 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=21986 # 1i4wA.150.251 read from T0287.t04.many.frag # found chain 1i4wA in template set T0287 150 :PLLKLFVMT 1i4wA 240 :KPIALVEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21987 # 1nh1A.151.174 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)M157 (1nh1A)A181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1nh1A)T182 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1nh1A 175 :LNTFRV T0287 159 :D 1nh1A 183 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=21989 # 1l9vA.151.185 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 151 :LLKLFVMTD 1l9vA 186 :EYKVTLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=21990 # 2biqA.151.157 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 151 :LLKLFVMTD 2biqA 251 :ILTIITLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=21991 # 1ry9A.151.109 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 151 :LLKLFVMTD 1ry9A 98 :LQLRVVIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21992 # 1vr8A.151.59 read from T0287.t04.many.frag # found chain 1vr8A in training set T0287 151 :LLKLFVMTD 1vr8A 72 :PVFLYVYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21993 # 1uv4A.151.35 read from T0287.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LL 1uv4A 36 :GL T0287 154 :LFV 1uv4A 39 :VLK T0287 158 :TD 1uv4A 43 :SD Number of specific fragments extracted= 3 number of extra gaps= 2 total=21996 # 1vl7A.151.77 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 151 :LLKLFVMTD 1vl7A 66 :LVNVLFVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21997 # 1no5A.151.45 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 T0287 151 :LLKLFVM 1no5A 46 :DLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21998 # 2a8eA.151.168 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FVMTD 2a8eA 173 :IQLQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22000 # 1k3sA.151.78 read from T0287.t04.many.frag # found chain 1k3sA in template set T0287 151 :LLKLFVMTD 1k3sA 79 :LVALYRLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22001 # 1gsa.151.220 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 151 :LLKLFVMTD 1gsa 221 :YCLARIPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22002 # 2b8mA.151.92 read from T0287.t04.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 151 :LLK 2b8mA 92 :ILE T0287 156 :VMTD 2b8mA 97 :VVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22004 # 1jl0A.151.238 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 151 :LLKLFVMTD 1jl0A 239 :YWTIAITPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22005 # 1fjgP.151.15 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1fjgP 16 :HYRIVV T0287 158 :TD 1fjgP 23 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22007 # 1k8wA.151.303 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LL 1k8wA 291 :FI T0287 154 :LFVMTD 1k8wA 294 :MGEIDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22009 # 1ow1A.151.153 read from T0287.t04.many.frag # found chain 1ow1A in training set T0287 151 :LLKLFVMTD 1ow1A 3623 :AYVLQIFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22010 # 1wd6A.151.66 read from T0287.t04.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L151 (1wd6A)A50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1wd6A)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1wd6A 52 :GIYLFT Number of specific fragments extracted= 1 number of extra gaps= 2 total=22011 # 1g60A.151.116 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22012 # 1p90A.151.28 read from T0287.t04.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1p90A 128 :FLVYQVSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22013 # 1wvhA.151.108 read from T0287.t04.many.frag # found chain 1wvhA in template set T0287 151 :LLKLFVMTD 1wvhA 1713 :VCHLFAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22014 # 1ysqA.151.145 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ysqA 144 :YAVSIS T0287 158 :TD 1ysqA 151 :ST Number of specific fragments extracted= 2 number of extra gaps= 1 total=22016 # 1k2xA.151.79 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMTD 1k2xA 85 :CVMDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=22018 # 1ifrA.151.19 read from T0287.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0287)L151 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ifrA 452 :VRLRNKSN Number of specific fragments extracted= 1 number of extra gaps= 1 total=22019 # 1ftrA.151.71 read from T0287.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ftrA)T74 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 1ftrA 73 :V T0287 154 :LFVMTD 1ftrA 75 :IMIGHN Number of specific fragments extracted= 2 number of extra gaps= 2 total=22021 # 1v4pA.151.101 read from T0287.t04.many.frag # found chain 1v4pA in training set T0287 151 :LLKLFVMTD 1v4pA 102 :ILKVVVIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=22022 # 2cxhA.151.98 read from T0287.t04.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)L151 (2cxhA)I79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 2cxhA 80 :IRVYAVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=22023 # 1vetA.151.87 read from T0287.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1vetA 88 :LVVSFI T0287 158 :TD 1vetA 95 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22025 # 1ikoP.151.48 read from T0287.t04.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M157 (1ikoP)V84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ikoP 78 :YYKVYM T0287 158 :TD 1ikoP 85 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22027 # 2acaA.151.135 read from T0287.t04.many.frag # found chain 2acaA in template set T0287 151 :LLKLFVMTD 2acaA 136 :FAEFAIMTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22028 # 1yu0A.151.107 read from T0287.t04.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 151 :LLKL 1yu0A 108 :DYAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22030 # 1l9vA.152.186 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 152 :LKLFVMTDE 1l9vA 187 :YKVTLNEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22031 # 1nh1A.152.175 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)M157 (1nh1A)A181 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFV 1nh1A 176 :NTFRV T0287 158 :TDE 1nh1A 182 :TDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22033 # 1no5A.152.46 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 T0287 152 :LKLFVM 1no5A 47 :LDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=22034 # 1vl7A.152.78 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 152 :LKLFVMTDE 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22035 # 1ry9A.152.110 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 152 :LKLFVMTDE 1ry9A 99 :QLRVVIKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22036 # 1jl0A.152.239 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 152 :LKLFVMTDE 1jl0A 240 :WTIAITPEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22037 # 1vr8A.152.60 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1vr8A 73 :VFLYVYK T0287 160 :E 1vr8A 81 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22039 # 1uv4A.152.36 read from T0287.t04.many.frag # found chain 1uv4A in training set T0287 152 :LKLFVMTDE 1uv4A 37 :LRVLKSSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22040 # 1ifrA.152.20 read from T0287.t04.many.frag # found chain 1ifrA in training set T0287 152 :LKLFVMTDE 1ifrA 452 :VRLRNKSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22041 # 1fjgP.152.16 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1fjgP 17 :YRIVV T0287 158 :TDE 1fjgP 23 :DAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22043 # 2a8eA.152.169 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 152 :LKLFVMTDE 2a8eA 170 :LCGIQLQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22044 # 2biqA.152.158 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 152 :LKLFVMTDE 2biqA 252 :LTIITLEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22045 # 1wd6A.152.67 read from T0287.t04.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L152 (1wd6A)G51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1wd6A 53 :IYLFT T0287 160 :E 1wd6A 59 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=22047 # 1wvhA.152.109 read from T0287.t04.many.frag # found chain 1wvhA in template set T0287 152 :LKLFVMTDE 1wvhA 1714 :CHLFAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22048 # 1gsa.152.221 read from T0287.t04.many.frag # found chain 1gsa in template set T0287 152 :LKLFVMTDE 1gsa 222 :CLARIPQGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22049 # 1k8wA.152.304 read from T0287.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :L 1k8wA 292 :I T0287 154 :LFVMTDE 1k8wA 294 :MGEIDDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22051 # 2c60A.152.67 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 T0287 152 :LKLFV 2c60A 81 :LDLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22053 # 1yu0A.152.108 read from T0287.t04.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 152 :LKL 1yu0A 109 :YAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=22055 # 2cy5A.152.94 read from T0287.t04.many.frag # found chain 2cy5A in template set T0287 152 :LKLFVMTDE 2cy5A 120 :LLLVCQEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22056 # 1vetA.152.88 read from T0287.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1vetA 89 :VVSFI T0287 158 :TDE 1vetA 95 :SSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22058 # 1g60A.152.117 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1g60A 118 :TILFFSK T0287 160 :E 1g60A 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=22060 # 1f8eA.152.109 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1f8eA 190 :MSICI T0287 158 :TDE 1f8eA 196 :GPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22062 # 1k2xA.152.80 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 1k2xA 82 :LD T0287 155 :FVMTDE 1k2xA 85 :CVMDGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22064 # 1yb3A.152.83 read from T0287.t04.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1yb3A)F77 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1yb3A)F77 T0287 154 :LFVMTDE 1yb3A 78 :VFAFPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22065 # 2cxhA.152.99 read from T0287.t04.many.frag # found chain 2cxhA in template set T0287 152 :LKLFVMTDE 2cxhA 80 :IRVYAVEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22066 # 1k3sA.152.79 read from T0287.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 1k3sA 80 :VA T0287 155 :FVMTDE 1k3sA 83 :YRLPQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22068 # 1dp4A.152.375 read from T0287.t04.many.frag # found chain 1dp4A in template set T0287 152 :LKLFVMTDE 1dp4A 376 :FSLWDMDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22069 # 1o4yA.152.118 read from T0287.t04.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)F155 (1o4yA)W138 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKL 1o4yA 135 :NAF T0287 156 :VMTDE 1o4yA 139 :TLTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22071 # 1ysqA.152.146 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :TDE 1ysqA 151 :STS Number of specific fragments extracted= 2 number of extra gaps= 2 total=22073 # 1tvgA.152.81 read from T0287.t04.many.frag # found chain 1tvgA in training set T0287 152 :LKLFVMTDE 1tvgA 72 :LKIEKSTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22074 # 1no5A.153.47 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)K153 (1no5A)D48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 1 number of extra gaps= 2 total=22075 # 1ry9A.153.111 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 153 :KLFVMTDEE 1ry9A 100 :LRVVIKDDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22076 # 1jl0A.153.240 read from T0287.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)D159 (1jl0A)E247 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFVMT 1jl0A 241 :TIAITP T0287 160 :EE 1jl0A 248 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22078 # 1l9vA.153.187 read from T0287.t04.many.frag # found chain 1l9vA in template set T0287 153 :KLFVMTDEE 1l9vA 188 :KVTLNEDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22079 # 1vl7A.153.79 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 153 :KLFVMTDEE 1vl7A 68 :NVLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22080 # 2biqA.153.159 read from T0287.t04.many.frag # found chain 2biqA in template set T0287 153 :KLFVMTDEE 2biqA 253 :TIITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22081 # 1wd6A.153.68 read from T0287.t04.many.frag # found chain 1wd6A in template set T0287 153 :KLFVMTDEE 1wd6A 52 :GIYLFTDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22082 # 1g60A.153.118 read from T0287.t04.many.frag # found chain 1g60A in training set T0287 153 :KLFVMTDEE 1g60A 119 :ILFFSKSKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22083 # 2c60A.153.68 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 T0287 153 :KLFV 2c60A 82 :DLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=22085 # 2czrA.153.72 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E160 (2czrA)N72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 153 :KLFVMTD 2czrA 65 :HIVAIPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22086 # 2a8eA.153.170 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 153 :KLFVMTDEE 2a8eA 171 :CGIQLQKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22087 # 1dp4A.153.376 read from T0287.t04.many.frag # found chain 1dp4A in template set T0287 153 :KLFVMTDEE 1dp4A 377 :SLWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=22088 # 1nh1A.153.176 read from T0287.t04.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)T158 (1nh1A)T182 because G (3-10) conformation "forbidden" or filtered. T0287 153 :KLFVM 1nh1A 177 :TFRVA T0287 159 :DEE 1nh1A 183 :DTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22090 # 3sil.153.139 read from T0287.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0287)E160 (3sil)D150 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (3sil)G151 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KLFVMTD 3sil 143 :VLYKSTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22091 # 1o4yA.153.119 read from T0287.t04.many.frag # found chain 1o4yA in training set T0287 153 :KLFVMTDEE 1o4yA 136 :AFWTLTDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22092 # 1h5rA.153.174 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 153 :KLFVMTDEE 1h5rA 175 :GLYFYDNDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22093 # 1wvhA.153.110 read from T0287.t04.many.frag # found chain 1wvhA in template set T0287 153 :KLFVMTDEE 1wvhA 1715 :HLFAELDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22094 # 1vr8A.153.61 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1vr8A 74 :FLYVYK T0287 160 :EE 1vr8A 81 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22096 # 1ysqA.153.147 read from T0287.t04.many.frag # found chain 1ysqA in training set T0287 153 :KLFVMTDEE 1ysqA 146 :VSISLSTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22097 # 1k2xA.153.81 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :K 1k2xA 83 :D T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22099 # 1ftrA.153.73 read from T0287.t04.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)E160 (1ftrA)D81 because E (beta_S) conformation "forbidden" or filtered. T0287 153 :KLFVMTD 1ftrA 74 :TIMIGHN T0287 161 :E 1ftrA 82 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22101 # 1gsa.153.222 read from T0287.t04.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1gsa)T232 T0287 153 :KLFVMT 1gsa 223 :LARIPQ T0287 160 :E 1gsa 230 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=22103 # 1fjgP.153.17 read from T0287.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1fjgP 18 :RIVV T0287 158 :TDEE 1fjgP 23 :DARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22105 # 1gycA.153.121 read from T0287.t04.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)K153 (1gycA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1gycA 123 :PFVVYDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22106 # 1f8eA.153.110 read from T0287.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0287 153 :KLFV 1f8eA 191 :SICI T0287 159 :DEE 1f8eA 197 :PNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22108 # 1yu0A.153.109 read from T0287.t04.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KL 1yu0A 110 :AI T0287 157 :MTD 1yu0A 114 :CDD T0287 161 :E 1yu0A 118 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=22111 # 2b4vA.153.79 read from T0287.t04.many.frag # found chain 2b4vA in template set Warning: unaligning (T0287)K153 (2b4vA)D99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (2b4vA)D106 because N (gamma') conformation "forbidden" or filtered. T0287 154 :LFVMTD 2b4vA 100 :LACMFD T0287 161 :E 2b4vA 107 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=22113 # 1vetA.153.89 read from T0287.t04.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFV 1vetA 90 :VSFI T0287 158 :TDEE 1vetA 95 :SSSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22115 # 1k8wA.153.305 read from T0287.t04.many.frag # found chain 1k8wA in template set T0287 153 :KLFVMTDEE 1k8wA 293 :GMGEIDDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22116 # 1yrkA.153.72 read from T0287.t04.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1yrkA 70 :QIVLMR T0287 160 :EE 1yrkA 77 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22118 # 1no5A.154.48 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)M157 (1no5A)I52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 T0287 154 :LFV 1no5A 49 :LAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22119 # 1zpvA.154.48 read from T0287.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1zpvA 46 :AVV T0287 158 :TDEEV 1zpvA 50 :SDEKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22121 # 2a8eA.154.171 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 2a8eA 173 :IQLQKEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22122 # 2biqA.154.160 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)V162 (2biqA)G262 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 2biqA 254 :IITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22123 # 1ry9A.154.112 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 154 :LFVMTDEEV 1ry9A 101 :RVVIKDDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22124 # 2c60A.154.69 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=22126 # 1g60A.154.119 read from T0287.t04.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1g60A 120 :LFFSK T0287 160 :EEV 1g60A 126 :KNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22128 # 1wd6A.154.69 read from T0287.t04.many.frag # found chain 1wd6A in template set T0287 154 :LFVMTDEEV 1wd6A 53 :IYLFTDEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22129 # 2czrA.154.73 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 2czrA 66 :IVAIPDN T0287 162 :V 2czrA 74 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22131 # 1o4yA.154.120 read from T0287.t04.many.frag # found chain 1o4yA in training set T0287 154 :LFVMTDEEV 1o4yA 137 :FWTLTDDET Number of specific fragments extracted= 1 number of extra gaps= 0 total=22132 # 1yrkA.154.73 read from T0287.t04.many.frag # found chain 1yrkA in template set T0287 154 :LFVMTDEEV 1yrkA 71 :IVLMRAAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22133 # 1ysqA.154.148 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1ysqA 147 :SIS T0287 158 :TDEEV 1ysqA 151 :STSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22135 # 1gycA.154.122 read from T0287.t04.many.frag # found chain 1gycA in template set T0287 154 :LFVMTDEEV 1gycA 123 :PFVVYDPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22136 # 1f60B.154.58 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 154 :LFVMTDEEV 1f60B 1171 :NCVVEDDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22137 # 1h5rA.154.175 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 154 :LFVMTDEEV 1h5rA 176 :LYFYDNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22138 # 1vr8A.154.62 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1vr8A 75 :LYVYK T0287 160 :EEV 1vr8A 81 :EEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22140 # 12asA.154.119 read from T0287.t04.many.frag # found chain 12asA in template set T0287 154 :LFVMTDEEV 12asA 120 :ERVMGDGER Number of specific fragments extracted= 1 number of extra gaps= 0 total=22141 # 1gw5S.154.66 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 154 :LFVMTDEEV 1gw5S 67 :FCICVDVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=22142 # 1dp4A.154.377 read from T0287.t04.many.frag # found chain 1dp4A in template set T0287 154 :LFVMTDEEV 1dp4A 378 :LWDMDPETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22143 # 2ajfE.154.63 read from T0287.t04.many.frag # found chain 2ajfE in template set T0287 154 :LFVMTDEEV 2ajfE 386 :SFVVKGDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22144 # 1k2xA.154.82 read from T0287.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1k2xA)L92 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 1 number of extra gaps= 2 total=22145 # 1cfzA.154.73 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 154 :LFVMTDE 1cfzA 74 :MMILRDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22146 # 1wnaA.154.90 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 154 :LFVMTDEEV 1wnaA 91 :EAVVSPGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22147 # 1vl7A.154.80 read from T0287.t04.many.frag # found chain 1vl7A in training set T0287 154 :LFVMTDEEV 1vl7A 69 :VLFVDDEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22148 # 1t9fA.154.158 read from T0287.t04.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)E160 (1t9fA)S184 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1t9fA)I185 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFVMTD 1t9fA 178 :EVVGTD T0287 162 :V 1t9fA 186 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=22150 # 1ftrA.154.74 read from T0287.t04.many.frag # found chain 1ftrA in training set T0287 154 :LFVMTDEEV 1ftrA 75 :IMIGHNDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=22151 # 1vr7A.154.90 read from T0287.t04.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 154 :LFVMT 1vr7A 79 :DLFTC T0287 162 :V 1vr7A 87 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22153 # 2a2cA.154.428 read from T0287.t04.many.frag # found chain 2a2cA in template set T0287 154 :LFVMTDEEV 2a2cA 409 :VSMVPADKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22154 # 1yj7A.154.125 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 154 :LFVMTDEEV 1yj7A 145 :VLVISSPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22155 # 1jl0A.154.241 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 154 :LFVMTDEEV 1jl0A 242 :IAITPEPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22156 # 2a8eA.155.172 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 155 :FVMTDEEVN 2a8eA 173 :IQLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22157 # 1zpvA.155.49 read from T0287.t04.many.frag # found chain 1zpvA in template set T0287 155 :FVMTDEEVN 1zpvA 47 :VVSSDEKQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22158 # 1no5A.155.49 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 T0287 155 :FVM 1no5A 50 :AII Number of specific fragments extracted= 1 number of extra gaps= 1 total=22159 # 1cfzA.155.74 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 155 :FVMTDE 1cfzA 75 :MILRDE T0287 163 :N 1cfzA 83 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=22161 # 2c60A.155.70 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 155 :FV 2c60A 84 :HY T0287 159 :DE 2c60A 88 :NE T0287 163 :N 2c60A 92 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=22164 # 1xkpC.155.94 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 155 :FVMTDEEVN 1xkpC 95 :ARLRLQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22165 # 1wnaA.155.91 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 155 :FVMTDEEVN 1wnaA 92 :AVVSPGEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22166 # 2biqA.155.161 read from T0287.t04.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)M157 (2biqA)L257 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FV 2biqA 255 :IT T0287 158 :TDEEVN 2biqA 258 :EDSSGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22168 # 1yb3A.155.86 read from T0287.t04.many.frag # found chain 1yb3A in training set T0287 155 :FVMTDEEVN 1yb3A 79 :FAFPKEELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22169 # 1gw5S.155.67 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 155 :FVMTDEEVN 1gw5S 68 :CICVDVNDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22170 # 1h5rA.155.176 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 155 :FVMTDEEVN 1h5rA 177 :YFYDNDVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22171 # 1ysqA.155.149 read from T0287.t04.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FV 1ysqA 148 :IS T0287 158 :TDEEVN 1ysqA 151 :STSRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22173 # 2b5iC.155.59 read from T0287.t04.many.frag # found chain 2b5iC in template set T0287 155 :FVMTDEEVN 2b5iC 93 :CQLQKKEIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22174 # 1ry9A.155.113 read from T0287.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FV 1ry9A 102 :VV T0287 158 :TDEEVN 1ry9A 105 :KDDYVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22176 # 1f60B.155.59 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 155 :FVMTDEEVN 1f60B 1172 :CVVEDDKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22177 # 1g60A.155.120 read from T0287.t04.many.frag # found chain 1g60A in training set T0287 155 :FVMTDEEVN 1g60A 121 :FFSKSKNHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22178 # 1vr8A.155.63 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1vr8A 76 :YVYK T0287 160 :EEVN 1vr8A 81 :EEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22180 # 12asA.155.120 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTD 12asA 121 :RVMGD T0287 161 :EV 12asA 127 :ER Number of specific fragments extracted= 2 number of extra gaps= 2 total=22182 # 1t6aA.155.71 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. T0287 155 :FVMTD 1t6aA 71 :SVRTA T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 1 total=22184 # 1yj7A.155.126 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 155 :FVMTDEEVN 1yj7A 146 :LVISSPEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22185 # 1wd6A.155.70 read from T0287.t04.many.frag # found chain 1wd6A in template set T0287 155 :FVMTDEEVN 1wd6A 54 :YLFTDEKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22186 # 1gycA.155.123 read from T0287.t04.many.frag # found chain 1gycA in template set T0287 155 :FVMTDEEVN 1gycA 124 :FVVYDPKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22187 # 2a90A.155.27 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 155 :FVMTD 2a90A 49 :WEFES T0287 162 :VN 2a90A 56 :KW Number of specific fragments extracted= 2 number of extra gaps= 1 total=22189 # 1uylA.155.186 read from T0287.t04.many.frag # found chain 1uylA in training set T0287 155 :FVMTDEEVN 1uylA 187 :ILHLKEDQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22190 # 2czrA.155.74 read from T0287.t04.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDE 2czrA 67 :VAIPDN T0287 162 :VN 2czrA 74 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22192 # 1pv5A.155.222 read from T0287.t04.many.frag # found chain 1pv5A in training set Warning: unaligning (T0287)D159 (1pv5A)D224 because D (zeta) conformation "forbidden" or filtered. T0287 155 :FVMT 1pv5A 220 :QIDS T0287 160 :EEVN 1pv5A 225 :DDID Number of specific fragments extracted= 2 number of extra gaps= 1 total=22194 # 1ln1A.155.41 read from T0287.t04.many.frag # found chain 1ln1A in template set T0287 155 :FVMTDEEVN 1ln1A 42 :YRLLDKKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22195 # 1yrkA.155.74 read from T0287.t04.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1yrkA 72 :VLMR T0287 160 :EEVN 1yrkA 77 :AEEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22197 # 2ajfE.155.64 read from T0287.t04.many.frag # found chain 2ajfE in template set T0287 155 :FVMTDEEVN 2ajfE 387 :FVVKGDDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22198 # 1t9fA.155.159 read from T0287.t04.many.frag # found chain 1t9fA in template set T0287 155 :FVMTDEEVN 1t9fA 179 :VVGTDSITG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22199 # 1cfzA.156.75 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 156 :VMTDE 1cfzA 76 :ILRDE T0287 163 :NF 1cfzA 83 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22201 # 1zpvA.156.50 read from T0287.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1zpvA 48 :V T0287 158 :TDEEVNF 1zpvA 50 :SDEKQDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22203 # 1no5A.156.50 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 156 :VM 1no5A 51 :II Number of specific fragments extracted= 1 number of extra gaps= 1 total=22204 # 2a8eA.156.173 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 156 :VMTDEEVNF 2a8eA 174 :QLQKEEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22205 # 2c60A.156.71 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 156 :V 2c60A 85 :Y T0287 159 :DE 2c60A 88 :NE T0287 163 :NF 2c60A 92 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22208 # 1wnaA.156.92 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 156 :VMTDEEVNF 1wnaA 93 :VVSPGEMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22209 # 1h5rA.156.177 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 156 :VMTDEEVNF 1h5rA 178 :FYDNDVVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22210 # 12asA.156.121 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTD 12asA 122 :VMGD T0287 161 :EVNF 12asA 127 :ERQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22212 # 1xkpC.156.95 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 156 :VMTDEEVNF 1xkpC 96 :RLRLQELDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22213 # 2b5iC.156.60 read from T0287.t04.many.frag # found chain 2b5iC in template set T0287 156 :VMTDEEVNF 2b5iC 94 :QLQKKEIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22214 # 1yb3A.156.87 read from T0287.t04.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1yb3A 80 :AFPKEEL T0287 164 :F 1yb3A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=22216 # 1t6aA.156.72 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 T0287 156 :VMTDEEVN 1t6aA 72 :VRTAGEET Number of specific fragments extracted= 1 number of extra gaps= 1 total=22217 # 1f60B.156.60 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 156 :VMTDEEVNF 1f60B 1173 :VVEDDKVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22218 # 1gw5S.156.68 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 156 :VMTDEEVNF 1gw5S 69 :ICVDVNDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22219 # 1vr8A.156.64 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMT 1vr8A 77 :VYK T0287 160 :EEVNF 1vr8A 81 :EEAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22221 # 1zn6A.156.183 read from T0287.t04.many.frag # found chain 1zn6A in template set T0287 156 :VMTDEEVNF 1zn6A 184 :ILPDGAYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22222 # 1yj7A.156.127 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 156 :VMTDEEVNF 1yj7A 147 :VISSPEVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22223 # 2a90A.156.28 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)D159 (2a90A)S53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMT 2a90A 50 :EFE T0287 162 :VNF 2a90A 56 :KWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22225 # 1ysqA.156.150 read from T0287.t04.many.frag # found chain 1ysqA in training set T0287 156 :VMTDEEVNF 1ysqA 149 :SLSTSRLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22226 # 1zh1A.156.96 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMTDE 1zh1A 132 :GMTTD T0287 162 :VNF 1zh1A 138 :VKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=22228 # 1uwcA.156.225 read from T0287.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)E161 (1uwcA)E231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDE 1uwcA 226 :VCTGD T0287 162 :V 1uwcA 232 :V T0287 164 :F 1uwcA 234 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=22231 # 2czrA.156.75 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 156 :VMTDEEVNF 2czrA 68 :AIPDNGVFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22232 # 1ry9A.156.114 read from T0287.t04.many.frag # found chain 1ry9A in template set T0287 156 :VMTDEEVNF 1ry9A 103 :VIKDDYVHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22233 # 1yymG.156.84 read from T0287.t04.many.frag # found chain 1yymG in template set T0287 156 :VMTDEEVNF 1yymG 227 :KCNDKKFNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22234 # 1pv5A.156.223 read from T0287.t04.many.frag # found chain 1pv5A in training set T0287 156 :VMTDEEVNF 1pv5A 221 :IDSDDDIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22235 # 1dmgA.156.16 read from T0287.t04.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1dmgA 18 :EISDFVF T0287 164 :F 1dmgA 26 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=22237 # 1xg8A.156.12 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1xg8A 4 :Y T0287 158 :TDEEVNF 1xg8A 6 :ADVICAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22239 # 1uylA.156.187 read from T0287.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)V162 (1uylA)Q194 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEE 1uylA 188 :LHLKED T0287 163 :NF 1uylA 195 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22241 # 1yreA.156.177 read from T0287.t04.many.frag # found chain 1yreA in template set Warning: unaligning (T0287)V156 (1yreA)S176 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEVNF 1yreA 177 :ITDHEWPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=22242 # 1jiwI.156.28 read from T0287.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E161 (1jiwI)E34 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :VMTDE 1jiwI 29 :ELRDS T0287 162 :VNF 1jiwI 35 :VAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22244 # 1cfzA.157.76 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 157 :MT 1cfzA 77 :LR T0287 160 :E 1cfzA 80 :E T0287 163 :NFY 1cfzA 83 :PAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22247 # 1zpvA.157.51 read from T0287.t04.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TD 1zpvA 50 :SD T0287 161 :EVNFY 1zpvA 53 :KQDFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=22249 # 2c60A.157.72 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFY 2c60A 92 :ILL Number of specific fragments extracted= 2 number of extra gaps= 2 total=22251 # 1no5A.157.51 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 157 :M 1no5A 52 :I T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=22253 # 1wnaA.157.93 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 157 :MTDEEVNFY 1wnaA 94 :VSPGEMTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22254 # 1h5rA.157.178 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 157 :MTDEEVNFY 1h5rA 179 :YDNDVVQMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22255 # 12asA.157.122 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 157 :MTD 12asA 123 :MGD T0287 161 :EVNFY 12asA 127 :ERQFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22257 # 2b5iC.157.61 read from T0287.t04.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)M157 (2b5iC)L95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (2b5iC)Y103 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 2b5iC 96 :QKKEIHL Number of specific fragments extracted= 1 number of extra gaps= 2 total=22258 # 1xkpC.157.96 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 157 :MTDEEVNFY 1xkpC 97 :LRLQELDTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22259 # 1f60B.157.61 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 157 :MTDEEVNFY 1f60B 1174 :VEDDKVSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22260 # 2a8eA.157.174 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 157 :MTDEEVNFY 2a8eA 175 :LQKEEVLNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22261 # 1t6aA.157.73 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)D159 (1t6aA)A75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 157 :MT 1t6aA 73 :RT T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 2 total=22263 # 1gw5S.157.69 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 157 :MTDEEVNFY 1gw5S 70 :CVDVNDNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22264 # 1yj7A.157.128 read from T0287.t04.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)D159 (1yj7A)S150 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MT 1yj7A 148 :IS T0287 160 :EEVNFY 1yj7A 151 :PEVNLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22266 # 1yb3A.157.88 read from T0287.t04.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDEEV 1yb3A 81 :FPKEEL T0287 164 :FY 1yb3A 88 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22268 # 1zh1A.157.97 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)D159 (1zh1A)T135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1zh1A)D136 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MT 1zh1A 133 :MT T0287 161 :EVNFY 1zh1A 137 :NVKCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22270 # 2a90A.157.29 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTDE 2a90A 51 :FESR T0287 162 :VNFY 2a90A 56 :KWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22272 # 1uwcA.157.226 read from T0287.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1uwcA)E231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 157 :MT 1uwcA 227 :CT T0287 160 :E 1uwcA 230 :D T0287 162 :V 1uwcA 232 :V T0287 165 :Y 1uwcA 235 :C Number of specific fragments extracted= 4 number of extra gaps= 3 total=22276 # 1h70A.157.194 read from T0287.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)D159 (1h70A)P196 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1h70A)E199 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MT 1h70A 194 :EI T0287 160 :EE 1h70A 197 :EE T0287 163 :NFY 1h70A 200 :SYA Number of specific fragments extracted= 3 number of extra gaps= 2 total=22279 # 1xg8A.157.13 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1xg8A)V8 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TD 1xg8A 6 :AD T0287 161 :EVNFY 1xg8A 9 :ICASC Number of specific fragments extracted= 2 number of extra gaps= 2 total=22281 # 1zn6A.157.184 read from T0287.t04.many.frag # found chain 1zn6A in template set T0287 157 :MTDEEVNFY 1zn6A 185 :LPDGAYGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22282 # 1pbjA.157.101 read from T0287.t04.many.frag # found chain 1pbjA in training set Warning: unaligning (T0287)E160 (1pbjA)D105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1pbjA)E106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1pbjA)I108 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MTD 1pbjA 102 :EED T0287 162 :V 1pbjA 107 :I T0287 164 :FY 1pbjA 109 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=22285 # 2czrA.157.76 read from T0287.t04.many.frag # found chain 2czrA in template set T0287 157 :MTDEEVNFY 2czrA 69 :IPDNGVFYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22286 # 1vr8A.157.65 read from T0287.t04.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MT 1vr8A 78 :YK T0287 160 :EEVNFY 1vr8A 81 :EEAKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22288 # 1n9pA.157.151 read from T0287.t04.many.frag # found chain 1n9pA in training set T0287 157 :MTDEEVNFY 1n9pA 316 :YTEDEVLWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22289 # 1o97D.157.287 read from T0287.t04.many.frag # found chain 1o97D in training set T0287 157 :MTDEEVNFY 1o97D 288 :NTDPGASIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22290 # 1t3gA.157.19 read from T0287.t04.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFY 1t3gA 424 :GEEERFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22291 # 1m9zA.157.41 read from T0287.t04.many.frag # found chain 1m9zA in training set T0287 157 :MTDEEVNFY 1m9zA 67 :KNDENITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22292 # 1vr7A.157.93 read from T0287.t04.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 157 :MT 1vr7A 82 :TC T0287 162 :VNFY 1vr7A 87 :VDPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=22294 # 1kzfA.157.184 read from T0287.t04.many.frag # found chain 1kzfA in training set T0287 157 :MTDEEVNFY 1kzfA 165 :LTEKERIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22295 # 1cfzA.158.77 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 158 :T 1cfzA 78 :R T0287 160 :E 1cfzA 80 :E T0287 163 :NFYA 1cfzA 83 :PALF Number of specific fragments extracted= 3 number of extra gaps= 2 total=22298 # 2c60A.158.73 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYA 2c60A 92 :ILLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=22300 # 1zpvA.158.52 read from T0287.t04.many.frag # found chain 1zpvA in template set T0287 158 :TDEEVNFYA 1zpvA 50 :SDEKQDFTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22301 # 1wnaA.158.94 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 158 :TDEEVNFYA 1wnaA 95 :SPGEMTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22302 # 1h5rA.158.179 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 158 :TDEEVNFYA 1h5rA 180 :DNDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22303 # 1gw5S.158.70 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 158 :TDEEVNFYA 1gw5S 71 :VDVNDNNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22304 # 12asA.158.123 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TD 12asA 124 :GD T0287 161 :EV 12asA 127 :ER T0287 164 :FYA 12asA 130 :FST Number of specific fragments extracted= 3 number of extra gaps= 2 total=22307 # 1no5A.158.52 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=22308 # 1uwcA.158.227 read from T0287.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)E161 (1uwcA)E231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TDE 1uwcA 228 :TGD T0287 162 :V 1uwcA 232 :V T0287 164 :FYA 1uwcA 234 :CCE Number of specific fragments extracted= 3 number of extra gaps= 2 total=22311 # 1t6aA.158.74 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 158 :TD 1t6aA 74 :TA T0287 161 :EVN 1t6aA 77 :EET T0287 166 :A 1t6aA 82 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=22314 # 1h70A.158.195 read from T0287.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)V162 (1h70A)E199 because G (3-10) conformation "forbidden" or filtered. T0287 158 :TDEE 1h70A 195 :IPEE T0287 163 :NFYA 1h70A 200 :SYAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22316 # 2a90A.158.30 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)D159 (2a90A)S53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :T 2a90A 52 :E T0287 162 :VNFYA 2a90A 56 :KWLPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22318 # 1xkpC.158.97 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 158 :TDEEVNFYA 1xkpC 98 :RLQELDTHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22319 # 1yj7A.158.129 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 158 :TDEEVNFYA 1yj7A 149 :SSPEVNLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22320 # 1f60B.158.62 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 158 :TDEEVNFYA 1f60B 1175 :EDDKVSLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22321 # 2b5iC.158.62 read from T0287.t04.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)Y165 (2b5iC)Y103 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 2b5iC 96 :QKKEIHL T0287 166 :A 2b5iC 104 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=22323 # 1zh1A.158.98 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)D159 (1zh1A)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :T 1zh1A 134 :T T0287 160 :EEVNFYA 1zh1A 136 :DNVKCPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=22325 # 1xg8A.158.14 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E161 (1xg8A)I9 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDE 1xg8A 6 :ADV T0287 162 :VNFYA 1xg8A 10 :CASCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22327 # 1pbjA.158.102 read from T0287.t04.many.frag # found chain 1pbjA in training set T0287 158 :TDEEVNFYA 1pbjA 103 :EDDEIIGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22328 # 2btiA.158.37 read from T0287.t04.many.frag # found chain 2btiA in template set T0287 158 :TDEEVNFYA 2btiA 36 :APKEVSVHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22329 # 1t3gA.158.20 read from T0287.t04.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFYA 1t3gA 424 :GEEERFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22330 # 1l3lA.158.138 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 158 :TDEEVNFYA 1l3lA 139 :LDREIDAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22331 # 1zn6A.158.185 read from T0287.t04.many.frag # found chain 1zn6A in template set T0287 158 :TDEEVNFYA 1zn6A 186 :PDGAYGDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22332 # 1o97D.158.288 read from T0287.t04.many.frag # found chain 1o97D in training set T0287 158 :TDEEVNFYA 1o97D 289 :TDPGASIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22333 # 1uylA.158.189 read from T0287.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)Y165 (1uylA)Y197 because G (3-10) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 1uylA 190 :LKEDQTE T0287 166 :A 1uylA 198 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=22335 # 1mkaA.158.59 read from T0287.t04.many.frag # found chain 1mkaA in template set T0287 158 :TDEEVNFYA 1mkaA 60 :INPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22336 # 2a8eA.158.175 read from T0287.t04.many.frag # found chain 2a8eA in template set T0287 158 :TDEEVNFYA 2a8eA 176 :QKEEVLNMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22337 # 1ngmB.158.31 read from T0287.t04.many.frag # found chain 1ngmB in template set T0287 158 :TDEEVNFYA 1ngmB 466 :DDEELNAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22338 # 1lbu.158.162 read from T0287.t04.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :TD 1lbu 163 :GA T0287 161 :EVNFYA 1lbu 166 :SQGFCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22340 # 1yzxA.158.189 read from T0287.t04.many.frag # found chain 1yzxA in template set Warning: unaligning (T0287)D159 (1yzxA)D191 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1yzxA)G192 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :T 1yzxA 190 :V T0287 161 :EVNFYA 1yzxA 193 :QTHMLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22342 # 1gw5S.159.71 read from T0287.t04.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DEEV 1gw5S 72 :DVND T0287 164 :FYAN 1gw5S 77 :NLAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22344 # 1cfzA.159.78 read from T0287.t04.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)D159 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 160 :E 1cfzA 80 :E T0287 163 :NFYAN 1cfzA 83 :PALFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=22346 # 1wnaA.159.95 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 159 :DEEVNFYAN 1wnaA 96 :PGEMTALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22347 # 1l3lA.159.139 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)E161 (1l3lA)E142 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DE 1l3lA 140 :DR T0287 162 :VNFYAN 1l3lA 143 :IDAVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22349 # 1h5rA.159.180 read from T0287.t04.many.frag # found chain 1h5rA in template set T0287 159 :DEEVNFYAN 1h5rA 181 :NDVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22350 # 2c60A.159.74 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYAN 2c60A 92 :ILLKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22352 # 1xkpC.159.98 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 159 :DEEVNFYAN 1xkpC 99 :LQELDTHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22353 # 1xg8A.159.15 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 159 :DEEVNFYAN 1xg8A 7 :DVICASCVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22354 # 12asA.159.124 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :D 12asA 125 :D T0287 161 :EV 12asA 127 :ER T0287 164 :FYAN 12asA 130 :FSTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22357 # 1h70A.159.196 read from T0287.t04.many.frag # found chain 1h70A in training set T0287 159 :DEEVNFYAN 1h70A 196 :PEEESYAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22358 # 1zh1A.159.99 read from T0287.t04.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 159 :DE 1zh1A 135 :TD T0287 162 :VNFYAN 1zh1A 138 :VKCPCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22360 # 1xdnA.159.68 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1xdnA)D116 Warning: unaligning (T0287)F164 (1xdnA)F121 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 160 :EEVN 1xdnA 117 :PNEN T0287 166 :AN 1xdnA 123 :GY Number of specific fragments extracted= 2 number of extra gaps= 2 total=22362 # 1zpvA.159.53 read from T0287.t04.many.frag # found chain 1zpvA in template set T0287 159 :DEEVNFYAN 1zpvA 51 :DEKQDFTYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22363 # 1f60B.159.63 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 159 :DEEVNFYAN 1f60B 1176 :DDKVSLDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22364 # 2a90A.159.31 read from T0287.t04.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. T0287 159 :D 2a90A 53 :S T0287 161 :EVNFYAN 2a90A 55 :GKWLPYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22366 # 1yj7A.159.130 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 159 :DEEVNFYAN 1yj7A 150 :SPEVNLAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22367 # 1mkaA.159.60 read from T0287.t04.many.frag # found chain 1mkaA in template set T0287 159 :DEEVNFYAN 1mkaA 61 :NPDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22368 # 1ngmB.159.32 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)D159 (1ngmB)D467 because D (zeta) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1ngmB 468 :EELNAHLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22369 # 1lbu.159.163 read from T0287.t04.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :D 1lbu 164 :A T0287 161 :EVNFYAN 1lbu 166 :SQGFCAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22371 # 1t0tV.159.150 read from T0287.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)D159 (1t0tV)Q151 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1t0tV)N155 because D (zeta) conformation "forbidden" or filtered. T0287 160 :EEV 1t0tV 152 :GND T0287 164 :FYAN 1t0tV 156 :WYML Number of specific fragments extracted= 2 number of extra gaps= 2 total=22373 # 1uylA.159.190 read from T0287.t04.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)V162 (1uylA)Q194 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEE 1uylA 191 :KED T0287 163 :NFYAN 1uylA 195 :TEYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22375 # 1uwcA.159.228 read from T0287.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :DEEVN 1uwcA 229 :GDEVQ T0287 165 :YAN 1uwcA 235 :CEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22377 # 1o97D.159.289 read from T0287.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)D159 (1o97D)D290 because D (zeta) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22378 # 2b5iC.159.63 read from T0287.t04.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)A166 (2b5iC)Q104 because E (beta_S) conformation "forbidden" or filtered. T0287 159 :DEEVNFY 2b5iC 97 :KKEIHLY T0287 167 :N 2b5iC 105 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=22380 # 1qo7A.159.366 read from T0287.t04.many.frag # found chain 1qo7A in training set T0287 159 :DEEVNFYAN 1qo7A 369 :HAEGGHFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22381 # 1t6aA.159.75 read from T0287.t04.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 159 :DEEVN 1t6aA 75 :AGEET T0287 166 :AN 1t6aA 82 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22383 # 1rcwA.159.102 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 159 :DEEVNFYAN 1rcwA 103 :PEELEAHEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22384 # 1no5A.159.53 read from T0287.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=22385 # 2a8eA.159.176 read from T0287.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)A166 (2a8eA)N184 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DEEVNFY 2a8eA 177 :KEEVLNM T0287 167 :N 2a8eA 185 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=22387 # 1i60A.159.248 read from T0287.t04.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)D159 (1i60A)R249 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1i60A 250 :PEYYKLTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22388 # 1gw5S.160.72 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 160 :EEVNFYANL 1gw5S 73 :VNDNNLAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22389 # 1h5rA.160.181 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 T0287 160 :EEVNFYAN 1h5rA 182 :DVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=22390 # 1xg8A.160.16 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 160 :EEVNFYANL 1xg8A 8 :VICASCVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22391 # 1l3lA.160.140 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)N163 (1l3lA)D144 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEV 1l3lA 141 :REI T0287 164 :FYANL 1l3lA 145 :AVAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22393 # 2c60A.160.75 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 160 :E 2c60A 89 :E T0287 163 :NFYANL 2c60A 92 :ILLKNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22395 # 1xkpC.160.99 read from T0287.t04.many.frag # found chain 1xkpC in training set T0287 160 :EEVNFYANL 1xkpC 100 :QELDTHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22396 # 1xdnA.160.69 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 167 :NL 1xdnA 124 :YH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22398 # 1t0tV.160.151 read from T0287.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)E160 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1t0tV)N155 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1t0tV)Y157 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EV 1t0tV 153 :ND T0287 164 :F 1t0tV 156 :W T0287 166 :ANL 1t0tV 158 :MLS Number of specific fragments extracted= 3 number of extra gaps= 3 total=22401 # 1zh1A.160.100 read from T0287.t04.many.frag # found chain 1zh1A in template set T0287 160 :EEVNFYANL 1zh1A 136 :DNVKCPCQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22402 # 1f60B.160.64 read from T0287.t04.many.frag # found chain 1f60B in training set T0287 160 :EEVNFYANL 1f60B 1177 :DKVSLDDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22403 # 1lbu.160.164 read from T0287.t04.many.frag # found chain 1lbu in training set T0287 160 :EEVNFYANL 1lbu 165 :GSQGFCALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22404 # 1rcwA.160.103 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 160 :EEVNFYANL 1rcwA 104 :EELEAHEPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22405 # 1mkaA.160.61 read from T0287.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)N167 (1mkaA)C69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 T0287 160 :EEVNFYA 1mkaA 62 :PDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=22406 # 1qnrA.160.129 read from T0287.t04.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)E160 (1qnrA)N130 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1qnrA 131 :ATTWYTNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=22407 # 12asA.160.125 read from T0287.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 12asA 127 :ERQFSTLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22408 # 1h70A.160.197 read from T0287.t04.many.frag # found chain 1h70A in training set T0287 160 :EEVNFYANL 1h70A 197 :EEESYAANC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22409 # 1ngmB.160.33 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N163 (1ngmB)N471 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 160 :EEV 1ngmB 468 :EEL T0287 164 :FY 1ngmB 472 :AH T0287 167 :NL 1ngmB 475 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=22412 # 1zgkA.160.240 read from T0287.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 T0287 160 :E 1zgkA 542 :E T0287 163 :NFYANL 1zgkA 545 :TFVAPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22414 # 1yj7A.160.131 read from T0287.t04.many.frag # found chain 1yj7A in template set T0287 160 :EEVNFYANL 1yj7A 151 :PEVNLAPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22415 # 2ex0A.160.376 read from T0287.t04.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)N167 (2ex0A)S408 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 2ex0A 401 :SQVIFWD T0287 168 :L 2ex0A 409 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=22417 # 1fo8A.160.72 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 160 :EEVNFYANL 1fo8A 177 :DHRKFQGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22418 # 2b5iC.160.64 read from T0287.t04.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)Y165 (2b5iC)Y103 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNF 2b5iC 98 :KEIHL T0287 166 :ANL 2b5iC 104 :QTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22420 # 1wnaA.160.96 read from T0287.t04.many.frag # found chain 1wnaA in training set T0287 160 :EEVNFYANL 1wnaA 97 :GEMTALLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22421 # 1o97D.160.290 read from T0287.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1o97D)K300 T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22422 # 1dmgA.160.20 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 160 :EEVNFYANL 1dmgA 22 :FVFNIDPNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22423 # 1zavA.160.126 read from T0287.t04.many.frag # found chain 1zavA in template set T0287 160 :EEVNFYANL 1zavA 126 :EEVENIAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22424 # 1i60A.160.249 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 160 :EEVNFYANL 1i60A 250 :PEYYKLTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22425 # 1dqzA.160.42 read from T0287.t04.many.frag # found chain 1dqzA in training set T0287 160 :EEVNFYANL 1dqzA 45 :DYNGWDINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22426 # 1vk4A.160.186 read from T0287.t04.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1vk4A 175 :REAETLT T0287 168 :L 1vk4A 183 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=22428 # 1h8eG.160.187 read from T0287.t04.many.frag # found chain 1h8eG in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h8eG)D197 T0287 160 :EEVNFYAN 1h8eG 188 :ESMSIYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22429 # 1gw5S.161.73 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 161 :EVNFYANLK 1gw5S 74 :NDNNLAYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22430 # 1xg8A.161.17 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 161 :EVNFYANLK 1xg8A 9 :ICASCVNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22431 # 1h5rA.161.182 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 161 :EVNFYAN 1h5rA 183 :VVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=22432 # 2c60A.161.76 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :LK 2c60A 97 :QD Number of specific fragments extracted= 2 number of extra gaps= 2 total=22434 # 1l3lA.161.141 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 161 :EVNFYANLK 1l3lA 142 :EIDAVAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22435 # 1t0tV.161.152 read from T0287.t04.many.frag # found chain 1t0tV in training set T0287 161 :EVNFYANLK 1t0tV 153 :NDNWYMLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22436 # 1qnrA.161.130 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 161 :EVNFYANLK 1qnrA 131 :ATTWYTNTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22437 # 1xdnA.161.70 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)N163 (1xdnA)N120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EV 1xdnA 118 :NE T0287 164 :FY 1xdnA 121 :FF T0287 167 :NLK 1xdnA 124 :YHI Number of specific fragments extracted= 3 number of extra gaps= 2 total=22440 # 1dmgA.161.21 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 161 :EVNFYANLK 1dmgA 23 :VFNIDPNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22441 # 1rcwA.161.104 read from T0287.t04.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)A166 (1rcwA)E110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFY 1rcwA 105 :ELEAH T0287 168 :LK 1rcwA 112 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22443 # 2ex0A.161.377 read from T0287.t04.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)K169 (2ex0A)K410 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 2ex0A 402 :QVIFWDSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22444 # 1fo8A.161.73 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 161 :EVNFYANLK 1fo8A 178 :HRKFQGYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22445 # 1lbu.161.165 read from T0287.t04.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYANLK 1lbu 169 :FCALAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22447 # 1josA.161.60 read from T0287.t04.many.frag # found chain 1josA in training set T0287 161 :EVNFYANLK 1josA 61 :EMAIEQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22448 # 1ngmB.161.34 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N163 (1ngmB)N471 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 161 :EV 1ngmB 469 :EL T0287 164 :FY 1ngmB 472 :AH T0287 167 :NLK 1ngmB 475 :LNE Number of specific fragments extracted= 3 number of extra gaps= 2 total=22451 # 1mkaA.161.62 read from T0287.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1mkaA)F71 T0287 161 :EVNFYAN 1mkaA 63 :DLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=22452 # 1vk4A.161.187 read from T0287.t04.many.frag # found chain 1vk4A in template set T0287 161 :EVNFYANLK 1vk4A 176 :EAETLTGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22453 # 1hp1A.161.297 read from T0287.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1hp1A)R332 T0287 162 :VNFYANLK 1hp1A 333 :VLYTPEIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22454 # 1xkpC.161.100 read from T0287.t04.many.frag # found chain 1xkpC in training set Warning: unaligning (T0287)N163 (1xkpC)D103 because E (beta_S) conformation "forbidden" or filtered. T0287 161 :EV 1xkpC 101 :EL T0287 164 :FYANLK 1xkpC 104 :THGLQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22456 # 1e0tA.161.314 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LK 1e0tA 322 :LE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22457 # 1dqzA.161.43 read from T0287.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYAN 1dqzA 46 :YNGWDIN T0287 169 :K 1dqzA 54 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=22459 # 1rz2A.161.143 read from T0287.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)N163 (1rz2A)S146 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EV 1rz2A 144 :DG T0287 165 :YANLK 1rz2A 148 :FGSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22461 # 1zdyA.161.127 read from T0287.t04.many.frag # found chain 1zdyA in template set Warning: unaligning (T0287)E161 (1zdyA)N128 because D (zeta) conformation "forbidden" or filtered. T0287 162 :VNFYANLK 1zdyA 129 :MPGVAELS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22462 # 1t0hB.161.87 read from T0287.t04.many.frag # found chain 1t0hB in template set T0287 161 :EVNFYANLK 1t0hB 289 :RSNTRSSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22463 # 1thtA.161.239 read from T0287.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)N167 (1thtA)N246 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EVNFYA 1thtA 240 :SHDLGE T0287 168 :LK 1thtA 247 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22465 # 1zh1A.161.101 read from T0287.t04.many.frag # found chain 1zh1A in template set T0287 161 :EVNFYANLK 1zh1A 137 :NVKCPCQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22466 # 1i60A.161.250 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 161 :EVNFYANLK 1i60A 251 :EYYKLTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22467 # 1zgkA.161.241 read from T0287.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 T0287 163 :NFYANLK 1zgkA 545 :TFVAPMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22468 # 1zavA.161.127 read from T0287.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0287)N167 (1zavA)K133 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1zavA 127 :EVENIA T0287 168 :LK 1zavA 134 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22470 # 12asA.161.126 read from T0287.t04.many.frag # found chain 12asA in template set T0287 161 :EVNFYANLK 12asA 127 :ERQFSTLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22471 # 1xg8A.162.18 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 162 :VNFYANLKT 1xg8A 10 :CASCVNAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22472 # 1gw5S.162.74 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 162 :VNFYANLKT 1gw5S 75 :DNNLAYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22473 # 2c60A.162.77 read from T0287.t04.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 2c60A 92 :ILLK T0287 168 :LKT 2c60A 97 :QDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=22475 # 1h5rA.162.183 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 162 :VNFYAN 1h5rA 184 :VQMAKN T0287 170 :T 1h5rA 192 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=22477 # 2bgcA.162.205 read from T0287.t04.many.frag # found chain 2bgcA in template set T0287 162 :VNFYANLKT 2bgcA 205 :CFYVQNLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22478 # 1dmgA.162.22 read from T0287.t04.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 162 :V 1dmgA 24 :F T0287 164 :FYANLKT 1dmgA 26 :IDPNYDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22480 # 1e0tA.162.315 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKT 1e0tA 322 :LEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22481 # 1josA.162.61 read from T0287.t04.many.frag # found chain 1josA in training set T0287 162 :VNFYANLKT 1josA 62 :MAIEQGMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22482 # 1l3lA.162.142 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 162 :VNFYANLKT 1l3lA 143 :IDAVAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22483 # 1vk4A.162.188 read from T0287.t04.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VNFYA 1vk4A 177 :AETLT T0287 168 :LKT 1vk4A 183 :TND Number of specific fragments extracted= 2 number of extra gaps= 1 total=22485 # 1qnrA.162.131 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 162 :VNFYANLKT 1qnrA 132 :TTWYTNTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22486 # 1rcwA.162.105 read from T0287.t04.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYA 1rcwA 106 :LEAHE T0287 168 :LKT 1rcwA 112 :SEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22488 # 1thtA.162.240 read from T0287.t04.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)Y165 (1thtA)G244 because G (3-10) conformation "forbidden" or filtered. T0287 162 :VNF 1thtA 241 :HDL T0287 166 :ANLKT 1thtA 245 :ENLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22490 # 2ex0A.162.378 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 162 :VNFYANLKT 2ex0A 403 :VIFWDSLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22491 # 1t0tV.162.153 read from T0287.t04.many.frag # found chain 1t0tV in training set T0287 162 :VNFYANLKT 1t0tV 154 :DNWYMLSME Number of specific fragments extracted= 1 number of extra gaps= 0 total=22492 # 1t0hB.162.88 read from T0287.t04.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)A166 (1t0hB)S294 because N (gamma') conformation "forbidden" or filtered. T0287 162 :VNFY 1t0hB 290 :SNTR T0287 167 :NLKT 1t0hB 295 :SLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22494 # 1rz2A.162.144 read from T0287.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 162 :VN 1rz2A 145 :GS T0287 165 :YANLKT 1rz2A 148 :FGSLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22496 # 1zavA.162.128 read from T0287.t04.many.frag # found chain 1zavA in template set T0287 162 :VNFYANLKT 1zavA 128 :VENIAKLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22497 # 1hp1A.162.298 read from T0287.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)Y165 (1hp1A)T336 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K169 (1hp1A)A340 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNF 1hp1A 333 :VLY T0287 166 :ANL 1hp1A 337 :PEI T0287 170 :T 1hp1A 341 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=22500 # 1xdnA.162.71 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VNFY 1xdnA 119 :ENFF T0287 167 :NLKT 1xdnA 124 :YHIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22502 # 1g5aA.162.105 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFY 1g5aA 106 :DLFA T0287 168 :LKT 1g5aA 112 :LKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=22504 # 1zdyA.162.128 read from T0287.t04.many.frag # found chain 1zdyA in template set T0287 162 :VNFYANLKT 1zdyA 129 :MPGVAELSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22505 # 1dqzA.162.44 read from T0287.t04.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)N167 (1dqzA)N52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYA 1dqzA 47 :NGWDI T0287 169 :KT 1dqzA 54 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22507 # 1fo8A.162.74 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 162 :VNFYANLKT 1fo8A 179 :RKFQGYYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22508 # 2ex0A.162.177 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 162 :VNFYANLKT 2ex0A 202 :TDYFEKAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22509 # 1ngmB.162.35 read from T0287.t04.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)N163 (1ngmB)N471 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 162 :V 1ngmB 470 :L T0287 164 :FY 1ngmB 472 :AH T0287 167 :NLKT 1ngmB 475 :LNEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=22512 # 1i60A.162.251 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 162 :VNFYANLKT 1i60A 252 :YYKLTAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22513 # 1txoA.162.198 read from T0287.t04.many.frag # found chain 1txoA in template set T0287 162 :VNFYANLKT 1txoA 202 :ILEALQIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22514 # 1qgiA.162.120 read from T0287.t04.many.frag # found chain 1qgiA in training set T0287 162 :VNFYANLKT 1qgiA 121 :KVFCGKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22515 # 2ar0A.162.485 read from T0287.t04.many.frag # found chain 2ar0A in template set T0287 162 :VNFYANLKT 2ar0A 486 :VLAAEAMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22516 # 1gw5S.163.75 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 163 :NFYANLKTI 1gw5S 76 :NNLAYLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22517 # 1xg8A.163.19 read from T0287.t04.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFYANL 1xg8A 11 :ASCVNA T0287 170 :TI 1xg8A 18 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22519 # 1josA.163.62 read from T0287.t04.many.frag # found chain 1josA in training set T0287 163 :NFYANLKTI 1josA 63 :AIEQGMKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22520 # 1e0tA.163.316 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTI 1e0tA 322 :LEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22521 # 2c60A.163.78 read from T0287.t04.many.frag # found chain 2c60A in template set T0287 163 :NFYANLKTI 2c60A 92 :ILLKNQDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22522 # 2bgcA.163.206 read from T0287.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N163 (2bgcA)F206 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 2bgcA 207 :YVQNLDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22523 # 1dmgA.163.23 read from T0287.t04.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)N163 (1dmgA)N25 because G (3-10) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1dmgA 26 :IDPNYDVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22524 # 1h5rA.163.184 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 163 :NFYAN 1h5rA 185 :QMAKN T0287 170 :TI 1h5rA 192 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22526 # 1g5aA.163.106 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)Y165 (1g5aA)A109 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NF 1g5aA 107 :LF T0287 167 :NLKTI 1g5aA 111 :DLKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22528 # 1uf3A.163.12 read from T0287.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NF 1uf3A 13 :NP T0287 167 :NLKTI 1uf3A 17 :DLEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22530 # 2ex0A.163.178 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 163 :NFYANLKTI 2ex0A 203 :DYFEKAEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22531 # 1rcwA.163.106 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 163 :NFYANLKTI 1rcwA 107 :EAHEPSEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22532 # 1l3lA.163.143 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 163 :NFYANLKTI 1l3lA 144 :DAVAAAATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22533 # 1thtA.163.241 read from T0287.t04.many.frag # found chain 1thtA in template set T0287 163 :NFYANLKTI 1thtA 242 :DLGENLVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22534 # 1xdnA.163.72 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)N163 (1xdnA)N120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :FY 1xdnA 121 :FF T0287 167 :NLKTI 1xdnA 124 :YHILI Number of specific fragments extracted= 2 number of extra gaps= 2 total=22536 # 1vk4A.163.189 read from T0287.t04.many.frag # found chain 1vk4A in template set T0287 163 :NFYANLKTI 1vk4A 178 :ETLTGTNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22537 # 1vliA.163.260 read from T0287.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE at template residue (1vliA)S249 Warning: unaligning (T0287)N167 (1vliA)N253 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 1vliA 250 :FAL T0287 168 :LKTI 1vliA 254 :PDEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=22539 # 1fm0D.163.19 read from T0287.t04.many.frag # found chain 1fm0D in training set T0287 163 :NFYANLKTI 1fm0D 20 :EVAADFPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22540 # 1rz2A.163.145 read from T0287.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)Y165 (1rz2A)F148 because G (3-10) conformation "forbidden" or filtered. T0287 163 :NF 1rz2A 146 :SM T0287 166 :ANLKTI 1rz2A 149 :GSLKKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22542 # 1wo8A.163.104 read from T0287.t04.many.frag # found chain 1wo8A in template set Warning: unaligning (T0287)N167 (1wo8A)N109 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 1wo8A 105 :PLAT T0287 168 :LKTI 1wo8A 110 :LVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22544 # 1uhvA.163.73 read from T0287.t04.many.frag # found chain 1uhvA in template set T0287 163 :NFYANLKTI 1uhvA 74 :KPFYNFTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22545 # 1t0hB.163.89 read from T0287.t04.many.frag # found chain 1t0hB in template set T0287 163 :NFYANLKTI 1t0hB 291 :NTRSSLAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22546 # 1qnrA.163.132 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 163 :NFYANLKTI 1qnrA 133 :TWYTNTAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22547 # 1rkuA.163.62 read from T0287.t04.many.frag # found chain 1rkuA in training set T0287 163 :NFYANLKTI 1rkuA 62 :EVIATLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22548 # 1eokA.163.56 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)F164 (1eokA)M58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)T170 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :N 1eokA 57 :G T0287 165 :YANLK 1eokA 59 :MGSFK T0287 171 :I 1eokA 65 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=22551 # 1txoA.163.199 read from T0287.t04.many.frag # found chain 1txoA in template set T0287 163 :NFYANLKTI 1txoA 203 :LEALQIPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22552 # 1fo8A.163.75 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 163 :NFYANLKTI 1fo8A 180 :KFQGYYKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22553 # 1t77A.163.316 read from T0287.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0287)L168 (1t77A)A2397 because D (zeta) conformation "forbidden" or filtered. T0287 163 :NFYAN 1t77A 2392 :ELPPW T0287 169 :KTI 1t77A 2398 :KTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22555 # 2bw4A.163.190 read from T0287.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0287 163 :NFYA 2bw4A 191 :GNYK T0287 169 :KTI 2bw4A 197 :ETP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22557 # 1f06A.163.86 read from T0287.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0287)F164 (1f06A)T88 because G (3-10) conformation "forbidden" or filtered. T0287 163 :N 1f06A 87 :D T0287 165 :YANLKTI 1f06A 89 :YDNHRDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22559 # 1xg8A.164.20 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 164 :FYANLKTIE 1xg8A 12 :SCVNAPTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22560 # 1josA.164.63 read from T0287.t04.many.frag # found chain 1josA in training set T0287 164 :FYANLKTIE 1josA 64 :IEQGMKGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22561 # 1gw5S.164.76 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 164 :FYANLKTIE 1gw5S 77 :NLAYLEAIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22562 # 1e0tA.164.317 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIE 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22563 # 1dmgA.164.24 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 164 :FYANLKTIE 1dmgA 26 :IDPNYDVMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22564 # 1xdnA.164.73 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)F164 (1xdnA)F121 because D (zeta) conformation "forbidden" or filtered. T0287 165 :YANLKTIE 1xdnA 122 :FGYHILID Number of specific fragments extracted= 1 number of extra gaps= 1 total=22565 # 1uf3A.164.13 read from T0287.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :FY 1uf3A 14 :PM T0287 167 :NLKTIE 1uf3A 17 :DLEALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22567 # 2c60A.164.79 read from T0287.t04.many.frag # found chain 2c60A in template set T0287 164 :FYANLKTIE 2c60A 93 :LLKNQDDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22568 # 1t77A.164.317 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 164 :FYANLKTIE 1t77A 2393 :LPPWAKTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22569 # 2bgcA.164.207 read from T0287.t04.many.frag # found chain 2bgcA in template set T0287 164 :FYANLKTIE 2bgcA 207 :YVQNLDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22570 # 1g5aA.164.107 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FY 1g5aA 108 :FA T0287 168 :LKTIE 1g5aA 112 :LKGLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22572 # 1eokA.164.57 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 164 :FYANLKTIE 1eokA 58 :MMGSFKSYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22573 # 2ex0A.164.179 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 164 :FYANLKTIE 2ex0A 204 :YFEKAEFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22574 # 1wo8A.164.105 read from T0287.t04.many.frag # found chain 1wo8A in template set T0287 164 :FYANLKTIE 1wo8A 106 :LATNLVAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22575 # 1vliA.164.261 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 164 :FYANLKTIE 1vliA 250 :FALNPDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22576 # 1thtA.164.242 read from T0287.t04.many.frag # found chain 1thtA in template set T0287 164 :FYANLKTIE 1thtA 243 :LGENLVVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22577 # 1f06A.164.87 read from T0287.t04.many.frag # found chain 1f06A in template set T0287 164 :FYANLKTIE 1f06A 88 :TYDNHRDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22578 # 1wa5C.164.75 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 164 :FYANLKTIE 1wa5C 76 :HLLPANNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22579 # 1rcwA.164.107 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 164 :FYANLKTIE 1rcwA 108 :AHEPSEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22580 # 2ak3A.164.164 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 164 :FYANLKTIE 2ak3A 164 :PETVVKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22581 # 2exrA.164.447 read from T0287.t04.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)Y165 (2exrA)C449 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2exrA)K451 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :F 2exrA 448 :P T0287 166 :A 2exrA 450 :A T0287 168 :LKTIE 2exrA 452 :VSSVE Number of specific fragments extracted= 3 number of extra gaps= 2 total=22584 # 1t0hB.164.90 read from T0287.t04.many.frag # found chain 1t0hB in template set T0287 164 :FYANLKTIE 1t0hB 292 :TRSSLAEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22585 # 1xrjA.164.210 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 164 :FYANLKTIE 1xrjA 211 :GADNLVAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22586 # 1vjuA.164.142 read from T0287.t04.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1vjuA)Y143 T0287 165 :YANLKTIE 1vjuA 144 :YAVEEDCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22587 # 1uhvA.164.74 read from T0287.t04.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)A166 (1uhvA)Y77 because D (zeta) conformation "forbidden" or filtered. T0287 164 :FY 1uhvA 75 :PF T0287 167 :NLKTIE 1uhvA 78 :NFTYID Number of specific fragments extracted= 2 number of extra gaps= 1 total=22589 # 1l3lA.164.144 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 164 :FYANLKTIE 1l3lA 145 :AVAAAATIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22590 # 1f35A.164.113 read from T0287.t04.many.frag # found chain 1f35A in template set T0287 164 :FYANLKTIE 1f35A 115 :MDWNEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22591 # 2fb5A.164.42 read from T0287.t04.many.frag # found chain 2fb5A in template set T0287 164 :FYANLKTIE 2fb5A 43 :ILCKMEDIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22592 # 1h5rA.164.185 read from T0287.t04.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)N167 (1h5rA)N189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 164 :FYA 1h5rA 186 :MAK T0287 170 :TIE 1h5rA 192 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22594 # 2al2A.164.213 read from T0287.t04.many.frag # found chain 2al2A in template set Warning: unaligning (T0287)A166 (2al2A)P216 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FY 2al2A 214 :VA T0287 167 :NLKTIE 2al2A 217 :NIQTAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22596 # 1xg8A.165.21 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 165 :YANLKTIEQ 1xg8A 13 :CVNAPTSKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22597 # 1josA.165.64 read from T0287.t04.many.frag # found chain 1josA in training set T0287 165 :YANLKTIEQ 1josA 65 :EQGMKGLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22598 # 1gw5S.165.77 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 165 :YANLKTIEQ 1gw5S 78 :LAYLEAIHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22599 # 1e0tA.165.318 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22600 # 1t77A.165.318 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 165 :YANLKTIEQ 1t77A 2394 :PPWAKTSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22601 # 1eokA.165.58 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 165 :YANLKTIEQ 1eokA 59 :MGSFKSYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22602 # 1uf3A.165.14 read from T0287.t04.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQ 1uf3A 17 :DLEALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22603 # 1vliA.165.262 read from T0287.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N167 (1vliA)N253 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YA 1vliA 251 :AL T0287 168 :LKTIEQ 1vliA 254 :PDELKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22605 # 2ex0A.165.180 read from T0287.t04.many.frag # found chain 2ex0A in template set T0287 165 :YANLKTIEQ 2ex0A 205 :FEKAEFLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22606 # 1dmgA.165.25 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 165 :YANLKTIEQ 1dmgA 27 :DPNYDVMWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22607 # 1g5aA.165.108 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. T0287 165 :Y 1g5aA 109 :A T0287 167 :NLKTIEQ 1g5aA 111 :DLKGLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22609 # 2exrA.165.448 read from T0287.t04.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)A166 (2exrA)A450 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 2exrA 449 :C T0287 167 :NLKTIEQ 2exrA 451 :KVSSVEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22611 # 2c60A.165.80 read from T0287.t04.many.frag # found chain 2c60A in template set T0287 165 :YANLKTIEQ 2c60A 94 :LKNQDDLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22612 # 1wa5C.165.76 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 165 :YANLKTIEQ 1wa5C 77 :LLPANNVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22613 # 1xdnA.165.74 read from T0287.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 166 :ANLKTIEQ 1xdnA 123 :GYHILIDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22614 # 2ak3A.165.165 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 165 :YANLKTIEQ 2ak3A 165 :ETVVKRLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22615 # 2bgcA.165.208 read from T0287.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N167 (2bgcA)N210 because D (zeta) conformation "forbidden" or filtered. T0287 165 :YA 2bgcA 208 :VQ T0287 168 :LKTIEQ 2bgcA 211 :LDYLKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22617 # 1e4fT.165.163 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 165 :YANLKTIEQ 1e4fT 164 :VVPLKVYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22618 # 1wo8A.165.106 read from T0287.t04.many.frag # found chain 1wo8A in template set T0287 165 :YANLKTIEQ 1wo8A 107 :ATNLVAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22619 # 1f06A.165.88 read from T0287.t04.many.frag # found chain 1f06A in template set T0287 165 :YANLKTIEQ 1f06A 89 :YDNHRDIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22620 # 1vjuA.165.143 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 165 :YANLKTIEQ 1vjuA 144 :YAVEEDCRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22621 # 1xrjA.165.211 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 165 :YANLKTIEQ 1xrjA 212 :ADNLVAINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22622 # 1auoA.165.77 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 165 :YANLKTIEQ 1auoA 78 :SISLEELEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22623 # 2fb5A.165.43 read from T0287.t04.many.frag # found chain 2fb5A in template set Warning: unaligning (T0287)N167 (2fb5A)K46 because G (3-10) conformation "forbidden" or filtered. T0287 165 :YA 2fb5A 44 :LC T0287 168 :LKTIEQ 2fb5A 47 :MEDIHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22625 # 1rcwA.165.108 read from T0287.t04.many.frag # found chain 1rcwA in template set T0287 165 :YANLKTIEQ 1rcwA 109 :HEPSEAAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22626 # 1ryiA.165.281 read from T0287.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1ryiA)D271 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 165 :Y 1ryiA 269 :T T0287 168 :LKTIEQ 1ryiA 272 :LGGLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=22628 # 1wdaA.165.535 read from T0287.t04.many.frag # found chain 1wdaA in template set T0287 165 :YANLKTIEQ 1wdaA 529 :ILSNKTLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22629 # 2al2A.165.214 read from T0287.t04.many.frag # found chain 2al2A in template set T0287 165 :YANLKTIEQ 2al2A 215 :APNIQTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22630 # 1i60A.165.254 read from T0287.t04.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)A166 (1i60A)T256 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 1i60A 255 :L T0287 167 :NLKTIEQ 1i60A 257 :AEEAIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22632 # 1f35A.165.114 read from T0287.t04.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1f35A 116 :D T0287 167 :NLKTIEQ 1f35A 118 :NEADALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22634 # 1gw5S.166.78 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 166 :ANLKTIEQY 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22635 # 1josA.166.65 read from T0287.t04.many.frag # found chain 1josA in training set T0287 166 :ANLKTIEQY 1josA 66 :QGMKGLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22636 # 1xg8A.166.22 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 166 :ANLKTIEQY 1xg8A 14 :VNAPTSKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22637 # 1e0tA.166.319 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22638 # 1t77A.166.319 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 166 :ANLKTIEQY 1t77A 2395 :PWAKTSEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22639 # 1eokA.166.59 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 166 :ANLKTIEQY 1eokA 60 :GSFKSYKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22640 # 1rttA.166.57 read from T0287.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0287)A166 (1rttA)G58 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1rttA)F59 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQY 1rttA 60 :PPAVERF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22641 # 1uf3A.166.15 read from T0287.t04.many.frag # found chain 1uf3A in template set T0287 166 :ANLKTIEQY 1uf3A 16 :GDLEALEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22642 # 2ak3A.166.166 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 166 :ANLKTIEQY 2ak3A 166 :TVVKRLKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22643 # 1ynbA.166.110 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 166 :ANLKTIEQY 1ynbA 111 :PDFSDVEVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22644 # 1xrjA.166.212 read from T0287.t04.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)A166 (1xrjA)D213 because G (3-10) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1xrjA 214 :NLVAINLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22645 # 2ex0A.166.181 read from T0287.t04.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)I171 (2ex0A)L211 because G (3-10) conformation "forbidden" or filtered. T0287 166 :ANLKT 2ex0A 206 :EKAEF T0287 172 :EQY 2ex0A 212 :QPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22647 # 1wa5C.166.77 read from T0287.t04.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)N167 (1wa5C)P79 because P (beta_P) conformation "forbidden" or filtered. T0287 166 :A 1wa5C 78 :L T0287 168 :LKTIEQY 1wa5C 80 :ANNVELI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22649 # 1auoA.166.78 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 166 :ANLKTIEQY 1auoA 79 :ISLEELEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22650 # 1vjuA.166.144 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 166 :ANLKTIEQY 1vjuA 145 :AVEEDCRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22651 # 1ro7A.166.106 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 166 :ANLKTIEQY 1ro7A 107 :DFFKQLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22652 # 2exrA.166.449 read from T0287.t04.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)A166 (2exrA)A450 because P (beta_P) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 2exrA 451 :KVSSVEKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22653 # 1vliA.166.263 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 166 :ANLKTIEQY 1vliA 252 :LNPDELKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22654 # 1xdnA.166.75 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 166 :ANLKTIEQY 1xdnA 123 :GYHILIDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22655 # 2a2mA.166.144 read from T0287.t04.many.frag # found chain 2a2mA in template set Warning: unaligning (T0287)A166 (2a2mA)I133 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (2a2mA)P134 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQY 2a2mA 135 :GTDIKDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=22656 # 1g5aA.166.109 read from T0287.t04.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y174 (1g5aA)K118 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKTIEQ 1g5aA 112 :LKGLKD Number of specific fragments extracted= 1 number of extra gaps= 2 total=22657 # 1v0wA.166.383 read from T0287.t04.many.frag # found chain 1v0wA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)S391 T0287 167 :NLKTIEQY 1v0wA 392 :QIKSLSEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22658 # 1e4fT.166.164 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 166 :ANLKTIEQY 1e4fT 165 :VPLKVYEMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22659 # 1i60A.166.255 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 166 :ANLKTIEQY 1i60A 256 :TAEEAIQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22660 # 2fb5A.166.44 read from T0287.t04.many.frag # found chain 2fb5A in template set T0287 166 :ANLKTIEQY 2fb5A 45 :CKMEDIHHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22661 # 1dmgA.166.26 read from T0287.t04.many.frag # found chain 1dmgA in training set T0287 166 :ANLKTIEQY 1dmgA 28 :PNYDVMWRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22662 # 1rcwA.166.109 read from T0287.t04.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)N167 (1rcwA)P111 because P (beta_P) conformation "forbidden" or filtered. T0287 166 :A 1rcwA 110 :E T0287 168 :LKTIEQY 1rcwA 112 :SEAAKAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22664 # 2fb0A.166.68 read from T0287.t04.many.frag # found chain 2fb0A in template set T0287 166 :ANLKTIEQY 2fb0A 66 :EKTAHFAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22665 # 1t8kA.166.59 read from T0287.t04.many.frag # found chain 1t8kA in training set T0287 166 :ANLKTIEQY 1t8kA 60 :EKITTVQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22666 # 1wwpA.166.97 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 166 :ANLKTIEQY 1wwpA 98 :AIFRRLPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22667 # 1josA.167.66 read from T0287.t04.many.frag # found chain 1josA in training set T0287 167 :NLKTIEQYN 1josA 67 :GMKGLEKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22668 # 1gw5S.167.79 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 167 :NLKTIEQYN 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22669 # 1xg8A.167.23 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 167 :NLKTIEQYN 1xg8A 15 :NAPTSKDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22670 # 1t77A.167.320 read from T0287.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0287)L168 (1t77A)A2397 because D (zeta) conformation "forbidden" or filtered. T0287 167 :N 1t77A 2396 :W T0287 169 :KTIEQYN 1t77A 2398 :KTSEEFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22672 # 1vjuA.167.145 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 167 :NLKTIEQYN 1vjuA 146 :VEEDCRDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22673 # 1rttA.167.58 read from T0287.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0287)N167 (1rttA)F59 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 1rttA 60 :PPAVERFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22674 # 1ifqA.167.36 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 167 :NLKTIEQYN 1ifqA 26 :SGRDLQQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22675 # 1auoA.167.79 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 167 :NLKTIEQYN 1auoA 80 :SLEELEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22676 # 1e0tA.167.320 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22677 # 2ak3A.167.167 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 167 :NLKTIEQYN 2ak3A 167 :VVKRLKAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22678 # 1uf3A.167.16 read from T0287.t04.many.frag # found chain 1uf3A in template set T0287 167 :NLKTIEQYN 1uf3A 17 :DLEALEKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22679 # 2exrA.167.450 read from T0287.t04.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)N167 (2exrA)K451 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2exrA 452 :VSSVEKMV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22680 # 1wa5C.167.78 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 167 :NLKTIEQYN 1wa5C 79 :PANNVELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22681 # 1eokA.167.60 read from T0287.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)T170 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0287 167 :NLK 1eokA 61 :SFK T0287 171 :IEQYN 1eokA 65 :YKDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22683 # 1vliA.167.264 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 167 :NLKTIEQYN 1vliA 253 :NPDELKEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22684 # 1ynbA.167.111 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 167 :NLKTIEQYN 1ynbA 112 :DFSDVEVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22685 # 1xrjA.167.213 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 167 :NLKTIEQYN 1xrjA 214 :NLVAINLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22686 # 2a2mA.167.145 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 167 :NLKTIEQYN 2a2mA 134 :PGTDIKDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22687 # 1e4fT.167.165 read from T0287.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0287)N167 (1e4fT)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 1e4fT 167 :LKVYEMFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=22688 # 1xdnA.167.76 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 167 :NLKTIEQYN 1xdnA 124 :YHILIDEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22689 # 1i60A.167.256 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 167 :NLKTIEQYN 1i60A 257 :AEEAIQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22690 # 1tr9A.167.310 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 167 :NLKTIEQYN 1tr9A 310 :RLERWQQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22691 # 1ryiA.167.283 read from T0287.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 168 :LKTIEQYN 1ryiA 272 :LGGLESVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22692 # 1wwpA.167.98 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 167 :NLKTIEQYN 1wwpA 99 :IFRRLPDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22693 # 2cxaA.167.216 read from T0287.t04.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)N167 (2cxaA)C200 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2cxaA 201 :EIPRRDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22694 # 1ro7A.167.107 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 167 :NLKTIEQYN 1ro7A 108 :FFKQLKDFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22695 # 1itxA.167.143 read from T0287.t04.many.frag # found chain 1itxA in training set T0287 167 :NLKTIEQYN 1itxA 176 :TAATREVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22696 # 7a3hA.167.240 read from T0287.t04.many.frag # found chain 7a3hA in training set T0287 167 :NLKTIEQYN 7a3hA 241 :FLDEAQVWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22697 # 1wzdA.167.164 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 167 :NLKTIEQYN 1wzdA 165 :GIAKLKVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22698 # 2fb5A.167.45 read from T0287.t04.many.frag # found chain 2fb5A in template set T0287 167 :NLKTIEQYN 2fb5A 46 :KMEDIHHML Number of specific fragments extracted= 1 number of extra gaps= 0 total=22699 # 1ifqA.168.37 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 168 :LKTIEQYND 1ifqA 27 :GRDLQQYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22700 # 1josA.168.67 read from T0287.t04.many.frag # found chain 1josA in training set Warning: unaligning (T0287)Y174 (1josA)A74 because G (3-10) conformation "forbidden" or filtered. T0287 168 :LKTIEQ 1josA 68 :MKGLEK T0287 175 :ND 1josA 75 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22702 # 1ro7A.168.108 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 168 :LKTIEQYND 1ro7A 109 :FKQLKDFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22703 # 1xg8A.168.24 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 168 :LKTIEQYND 1xg8A 16 :APTSKDIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22704 # 1gw5S.168.80 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 168 :LKTIEQYND 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22705 # 1vjuA.168.146 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 168 :LKTIEQYND 1vjuA 147 :EEDCRDFHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22706 # 1vliA.168.265 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 168 :LKTIEQYND 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22707 # 2a2mA.168.146 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 168 :LKTIEQYND 2a2mA 135 :GTDIKDYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22708 # 1wwpA.168.99 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 168 :LKTIEQYND 1wwpA 100 :FRRLPDYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22709 # 1rttA.168.59 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 168 :LKTIEQYND 1rttA 60 :PPAVERFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22710 # 1auoA.168.80 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 168 :LKTIEQYND 1auoA 81 :LEELEVSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22711 # 1t77A.168.321 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 168 :LKTIEQYND 1t77A 2397 :AKTSEEFVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22712 # 1ynbA.168.112 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 168 :LKTIEQYND 1ynbA 113 :FSDVEVYVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22713 # 2exrA.168.451 read from T0287.t04.many.frag # found chain 2exrA in template set T0287 168 :LKTIEQYND 2exrA 452 :VSSVEKMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22714 # 1tr9A.168.311 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 168 :LKTIEQYND 1tr9A 311 :LERWQQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22715 # 1uf3A.168.17 read from T0287.t04.many.frag # found chain 1uf3A in template set T0287 168 :LKTIEQYND 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22716 # 1xdnA.168.77 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 168 :LKTIEQYND 1xdnA 125 :HILIDEFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22717 # 1f5qB.168.225 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 168 :LKTIEQYND 1f5qB 226 :KEELHQCCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22718 # 1e0tA.168.321 read from T0287.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI T0287 176 :D 1e0tA 330 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=22720 # 1eokA.168.61 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 168 :LKTIEQYND 1eokA 62 :FKSYKDLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22721 # 2cxaA.168.217 read from T0287.t04.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)K169 (2cxaA)I202 because E (beta_S) conformation "forbidden" or filtered. T0287 168 :L 2cxaA 201 :E T0287 170 :TIEQYND 2cxaA 203 :PRRDYLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22723 # 2ak3A.168.168 read from T0287.t04.many.frag # found chain 2ak3A in template set T0287 168 :LKTIEQYND 2ak3A 168 :VKRLKAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22724 # 1xrjA.168.214 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 168 :LKTIEQYND 1xrjA 215 :LVAINLIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22725 # 1wa5C.168.79 read from T0287.t04.many.frag # found chain 1wa5C in template set T0287 168 :LKTIEQYND 1wa5C 80 :ANNVELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22726 # 1wzdA.168.165 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 168 :LKTIEQYND 1wzdA 166 :IAKLKVYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22727 # 2fb0A.168.70 read from T0287.t04.many.frag # found chain 2fb0A in template set T0287 168 :LKTIEQYND 2fb0A 68 :TAHFAQYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22728 # 1e4fT.168.166 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 168 :LKTIEQYND 1e4fT 167 :LKVYEMFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22729 # 1i60A.168.257 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 168 :LKTIEQYND 1i60A 258 :EEAIQTAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22730 # 1xqwA.168.274 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 168 :LKTIEQYND 1xqwA 275 :WEDREGYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22731 # 2bgcA.168.211 read from T0287.t04.many.frag # found chain 2bgcA in template set T0287 168 :LKTIEQYND 2bgcA 211 :LDYLKRYAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22732 # 1ifqA.169.38 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 169 :KTIEQYNDY 1ifqA 28 :RDLQQYQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22733 # 1ro7A.169.109 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 169 :KTIEQYNDY 1ro7A 110 :KQLKDFNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22734 # 1vjuA.169.147 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 169 :KTIEQYNDY 1vjuA 148 :EDCRDFHQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22735 # 1josA.169.68 read from T0287.t04.many.frag # found chain 1josA in training set T0287 169 :KTIEQYNDY 1josA 69 :KGLEKASPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22736 # 2a2mA.169.147 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 169 :KTIEQYNDY 2a2mA 136 :TDIKDYADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22737 # 1xdnA.169.78 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 169 :KTIEQYNDY 1xdnA 126 :ILIDEFTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22738 # 1wwpA.169.100 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 169 :KTIEQYNDY 1wwpA 101 :RRLPDYARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22739 # 1auoA.169.81 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 169 :KTIEQYNDY 1auoA 82 :EELEVSAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22740 # 1vliA.169.266 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 169 :KTIEQYNDY 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22741 # 1f5qB.169.226 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 169 :KTIEQYNDY 1f5qB 227 :EELHQCCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22742 # 1xqwA.169.275 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 169 :KTIEQYNDY 1xqwA 276 :EDREGYNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22743 # 1xg8A.169.25 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 169 :KTIEQYNDY 1xg8A 17 :PTSKDIYDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22744 # 1rttA.169.60 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 169 :KTIEQYNDY 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22745 # 1gw5S.169.81 read from T0287.t04.many.frag # found chain 1gw5S in template set T0287 169 :KTIEQYNDY 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22746 # 1qwtA.169.230 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 169 :KTIEQYNDY 1qwtA 403 :LTSDQYKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22747 # 1tr9A.169.312 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 169 :KTIEQYNDY 1tr9A 312 :ERWQQASAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22748 # 1t77A.169.322 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 169 :KTIEQYNDY 1t77A 2398 :KTSEEFVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22749 # 1uf3A.169.18 read from T0287.t04.many.frag # found chain 1uf3A in template set T0287 169 :KTIEQYNDY 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22750 # 1wzdA.169.166 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 169 :KTIEQYNDY 1wzdA 167 :AKLKVYKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22751 # 2f1rA.169.146 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 169 :KTIEQYNDY 2f1rA 147 :DEVERIAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22752 # 1ynbA.169.113 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 169 :KTIEQYNDY 1ynbA 114 :SDVEVYVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22753 # 2exrA.169.452 read from T0287.t04.many.frag # found chain 2exrA in template set T0287 169 :KTIEQYNDY 2exrA 453 :SSVEKMVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22754 # 1xrjA.169.215 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 169 :KTIEQYNDY 1xrjA 216 :VAINLIVQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22755 # 1lvaA.169.198 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 169 :KTIEQYNDY 1lvaA 575 :QALGEAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22756 # 1e4fT.169.167 read from T0287.t04.many.frag # found chain 1e4fT in template set T0287 169 :KTIEQYNDY 1e4fT 168 :KVYEMFYNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22757 # 1wduA.169.127 read from T0287.t04.many.frag # found chain 1wduA in template set T0287 169 :KTIEQYNDY 1wduA 131 :KPIESYLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22758 # 1eokA.169.62 read from T0287.t04.many.frag # found chain 1eokA in training set T0287 169 :KTIEQYNDY 1eokA 63 :KSYKDLDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22759 # 1qnrA.169.138 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 169 :KTIEQYNDY 1qnrA 139 :AAQTQYRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22760 # 1z7aA.169.226 read from T0287.t04.many.frag # found chain 1z7aA in template set T0287 169 :KTIEQYNDY 1z7aA 227 :NNGEQFFQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22761 # 2cxaA.169.218 read from T0287.t04.many.frag # found chain 2cxaA in template set T0287 169 :KTIEQYNDY 2cxaA 202 :IPRRDYLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22762 # 1ifqA.170.39 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 170 :TIEQYNDYV 1ifqA 29 :DLQQYQSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22763 # 1f5qB.170.227 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 170 :TIEQYNDYV 1f5qB 228 :ELHQCCDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22764 # 1vjuA.170.148 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 170 :TIEQYNDYV 1vjuA 149 :DCRDFHQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22765 # 1ro7A.170.110 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 170 :TIEQYNDYV 1ro7A 111 :QLKDFNAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22766 # 2a2mA.170.148 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 170 :TIEQYNDYV 2a2mA 137 :DIKDYADYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22767 # 1xqwA.170.276 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 170 :TIEQYNDYV 1xqwA 277 :DREGYNKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22768 # 1wwpA.170.101 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 170 :TIEQYNDYV 1wwpA 102 :RLPDYARLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22769 # 1josA.170.69 read from T0287.t04.many.frag # found chain 1josA in training set T0287 170 :TIEQYNDYV 1josA 70 :GLEKASPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22770 # 1qwtA.170.231 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 170 :TIEQYNDYV 1qwtA 404 :TSDQYKAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22771 # 1xdnA.170.79 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 170 :TIEQYNDYV 1xdnA 127 :LIDEFTAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22772 # 1auoA.170.82 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 170 :TIEQYNDYV 1auoA 83 :ELEVSAKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22773 # 1vliA.170.267 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 170 :TIEQYNDYV 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22774 # 1wzdA.170.167 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 170 :TIEQYNDYV 1wzdA 168 :KLKVYKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22775 # 1wduA.170.128 read from T0287.t04.many.frag # found chain 1wduA in template set T0287 170 :TIEQYNDYV 1wduA 132 :PIESYLEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22776 # 1xg8A.170.26 read from T0287.t04.many.frag # found chain 1xg8A in template set T0287 170 :TIEQYNDYV 1xg8A 18 :TSKDIYDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22777 # 1tr9A.170.313 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 170 :TIEQYNDYV 1tr9A 313 :RWQQASANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22778 # 1qnrA.170.139 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 170 :TIEQYNDYV 1qnrA 140 :AQTQYRKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22779 # 1lvaA.170.199 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 170 :TIEQYNDYV 1lvaA 576 :ALGEAREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22780 # 1wdaA.170.540 read from T0287.t04.many.frag # found chain 1wdaA in template set T0287 170 :TIEQYNDYV 1wdaA 534 :TLREHNSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22781 # 1rttA.170.61 read from T0287.t04.many.frag # found chain 1rttA in training set T0287 170 :TIEQYNDYV 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22782 # 1jl1A.170.128 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 170 :TIEQYNDYV 1jl1A 129 :ENERADELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22783 # 1ynbA.170.114 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 170 :TIEQYNDYV 1ynbA 115 :DVEVYVSDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22784 # 1wouA.170.44 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 170 :TIEQYNDYV 1wouA 45 :DCVQAEPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22785 # 2f1rA.170.147 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 170 :TIEQYNDYV 2f1rA 148 :EVERIAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22786 # 1ntyA.170.294 read from T0287.t04.many.frag # found chain 1ntyA in training set T0287 170 :TIEQYNDYV 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22787 # 1tqhA.170.229 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 170 :TIEQYNDYV 1tqhA 230 :EKDQLHEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22788 # 1nznA.170.88 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 170 :TIEQYNDYV 1nznA 89 :EYEKALKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22789 # 1oltA.170.80 read from T0287.t04.many.frag # found chain 1oltA in template set T0287 170 :TIEQYNDYV 1oltA 81 :KADQYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22790 # 1xrjA.170.216 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 170 :TIEQYNDYV 1xrjA 217 :AINLIVQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22791 # 2cxaA.170.219 read from T0287.t04.many.frag # found chain 2cxaA in template set T0287 170 :TIEQYNDYV 2cxaA 203 :PRRDYLNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22792 # 1f5qB.171.228 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 171 :IEQYNDYVR 1f5qB 229 :LHQCCDLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22793 # 1ifqA.171.40 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 171 :IEQYNDYVR 1ifqA 30 :LQQYQSQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22794 # 1vjuA.171.149 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 171 :IEQYNDYVR 1vjuA 150 :CRDFHQVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22795 # 2a2mA.171.149 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 171 :IEQYNDYVR 2a2mA 138 :IKDYADYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22796 # 1ro7A.171.111 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 171 :IEQYNDYVR 1ro7A 112 :LKDFNAYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22797 # 1xqwA.171.277 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 171 :IEQYNDYVR 1xqwA 278 :REGYNKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22798 # 1wwpA.171.102 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 171 :IEQYNDYVR 1wwpA 103 :LPDYARLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=22799 # 1qwtA.171.232 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 171 :IEQYNDYVR 1qwtA 405 :SDQYKAYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22800 # 1auoA.171.83 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 171 :IEQYNDYVR 1auoA 84 :LEVSAKMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22801 # 1wzdA.171.168 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 171 :IEQYNDYVR 1wzdA 169 :LKVYKDEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22802 # 1xdnA.171.80 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 171 :IEQYNDYVR 1xdnA 128 :IDEFTAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22803 # 1josA.171.70 read from T0287.t04.many.frag # found chain 1josA in training set T0287 171 :IEQYNDYVR 1josA 71 :LEKASPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22804 # 1lvaA.171.200 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 171 :IEQYNDYVR 1lvaA 577 :LGEAREVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22805 # 1jl1A.171.129 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 171 :IEQYNDYVR 1jl1A 130 :NERADELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22806 # 1vliA.171.268 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 171 :IEQYNDYVR 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22807 # 1b3tA.171.111 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 171 :IEQYNDYVR 1b3tA 572 :AEVLKDAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22808 # 1wduA.171.129 read from T0287.t04.many.frag # found chain 1wduA in template set T0287 171 :IEQYNDYVR 1wduA 133 :IESYLEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22809 # 1nznA.171.89 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 171 :IEQYNDYVR 1nznA 90 :YEKALKYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22810 # 1xodA.171.100 read from T0287.t04.many.frag # found chain 1xodA in training set T0287 171 :IEQYNDYVR 1xodA 106 :ARAFDRGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22811 # 2f1rA.171.148 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 171 :IEQYNDYVR 2f1rA 149 :VERIAEFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22812 # 1ntyA.171.295 read from T0287.t04.many.frag # found chain 1ntyA in training set T0287 171 :IEQYNDYVR 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22813 # 2b61A.171.362 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 171 :IEQYNDYVR 2b61A 344 :YDQFEKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22814 # 1xrjA.171.217 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 171 :IEQYNDYVR 1xrjA 218 :INLIVQHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22815 # 1qnrA.171.140 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 171 :IEQYNDYVR 1qnrA 141 :QTQYRKYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22816 # 1oltA.171.81 read from T0287.t04.many.frag # found chain 1oltA in template set T0287 171 :IEQYNDYVR 1oltA 82 :ADQYLDALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22817 # 1wouA.171.45 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 171 :IEQYNDYVR 1wouA 46 :CVQAEPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22818 # 1ynbA.171.115 read from T0287.t04.many.frag # found chain 1ynbA in training set T0287 171 :IEQYNDYVR 1ynbA 116 :VEVYVSDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22819 # 1tqhA.171.230 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 171 :IEQYNDYVR 1tqhA 231 :KDQLHEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22820 # 1w9cA.171.301 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 171 :IEQYNDYVR 1w9cA 1008 :IPAFKEHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22821 # 1l5oA.171.209 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 171 :IEQYNDYVR 1l5oA 210 :IDNKVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22822 # 1f5qB.172.229 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 172 :EQYNDYVRD 1f5qB 230 :HQCCDLVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22823 # 1ifqA.172.41 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 172 :EQYNDYVRD 1ifqA 31 :QQYQSQAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22824 # 1xqwA.172.278 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 172 :EQYNDYVRD 1xqwA 279 :EGYNKLLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22825 # 2a2mA.172.150 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 172 :EQYNDYVRD 2a2mA 139 :KDYADYEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22826 # 1vjuA.172.150 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 172 :EQYNDYVRD 1vjuA 151 :RDFHQVAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22827 # 1qwtA.172.233 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 172 :EQYNDYVRD 1qwtA 406 :DQYKAYLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22828 # 1wzdA.172.169 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 172 :EQYNDYVRD 1wzdA 170 :KVYKDEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22829 # 1jl1A.172.130 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 172 :EQYNDYVRD 1jl1A 131 :ERADELARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22830 # 1auoA.172.84 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 172 :EQYNDYVRD 1auoA 85 :EVSAKMVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22831 # 1b3tA.172.112 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 172 :EQYNDYVRD 1b3tA 573 :EVLKDAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22832 # 1nznA.172.90 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 172 :EQYNDYVRD 1nznA 91 :EKALKYVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22833 # 1ro7A.172.112 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 172 :EQYNDYVRD 1ro7A 113 :KDFNAYFKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22834 # 1wwpA.172.103 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 172 :EQYNDYVRD 1wwpA 104 :PDYARLMEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22835 # 1lvaA.172.201 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 172 :EQYNDYVRD 1lvaA 578 :GEAREVIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22836 # 1uddA.172.110 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 172 :EQYNDYVRD 1uddA 111 :SAYMDFMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22837 # 1xdnA.172.81 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 172 :EQYNDYVRD 1xdnA 129 :DEFTAQIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22838 # 1l5oA.172.210 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 172 :EQYNDYVRD 1l5oA 211 :DNKVDVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22839 # 2f1rA.172.149 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 172 :EQYNDYVRD 2f1rA 150 :ERIAEFILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22840 # 1josA.172.71 read from T0287.t04.many.frag # found chain 1josA in training set T0287 172 :EQYNDYVRD 1josA 72 :EKASPYIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22841 # 1z77A.172.125 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 172 :EQYNDYVRD 1z77A 126 :RVFFDFVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22842 # 1w9cA.172.302 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 172 :EQYNDYVRD 1w9cA 1009 :PAFKEHLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22843 # 2b61A.172.363 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 172 :EQYNDYVRD 2b61A 345 :DQFEKRIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22844 # 1o6dA.172.80 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 172 :EQYNDYVRD 1o6dA 79 :EEFADFLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22845 # 1xodA.172.101 read from T0287.t04.many.frag # found chain 1xodA in training set T0287 172 :EQYNDYVRD 1xodA 107 :RAFDRGIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22846 # 1wdaA.172.542 read from T0287.t04.many.frag # found chain 1wdaA in template set T0287 172 :EQYNDYVRD 1wdaA 536 :REHNSFVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=22847 # 2gmfA.172.103 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 172 :EQYNDYVRD 2gmfA 104 :ESFKENLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22848 # 1qnrA.172.141 read from T0287.t04.many.frag # found chain 1qnrA in training set T0287 172 :EQYNDYVRD 1qnrA 142 :TQYRKYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22849 # 1vliA.172.269 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 172 :EQYNDYVRD 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22850 # 1tqhA.172.231 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 172 :EQYNDYVRD 1tqhA 232 :DQLHEDIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22851 # 1wouA.172.46 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 172 :EQYNDYVRD 1wouA 47 :VQAEPVVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22852 # 1f5qB.173.230 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 173 :QYNDYVRDL 1f5qB 231 :QCCDLVDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22853 # 1ifqA.173.42 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 173 :QYNDYVRDL 1ifqA 32 :QYQSQAKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22854 # 1qwtA.173.234 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 173 :QYNDYVRDL 1qwtA 407 :QYKAYLQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22855 # 1xqwA.173.279 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 173 :QYNDYVRDL 1xqwA 280 :GYNKLLSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22856 # 1b3tA.173.113 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 173 :QYNDYVRDL 1b3tA 574 :VLKDAIKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22857 # 1vjuA.173.151 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 173 :QYNDYVRDL 1vjuA 152 :DFHQVAQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22858 # 1jl1A.173.131 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 173 :QYNDYVRDL 1jl1A 132 :RADELARAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22859 # 1auoA.173.85 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 173 :QYNDYVRDL 1auoA 86 :VSAKMVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22860 # 2a2mA.173.151 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 173 :QYNDYVRDL 2a2mA 140 :DYADYEAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22861 # 1wzdA.173.170 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 173 :QYNDYVRDL 1wzdA 171 :VYKDEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22862 # 1lvaA.173.202 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 173 :QYNDYVRDL 1lvaA 579 :EAREVIKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22863 # 1z77A.173.126 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 173 :QYNDYVRDL 1z77A 127 :VFFDFVREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22864 # 2b61A.173.364 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 173 :QYNDYVRDL 2b61A 346 :QFEKRIRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22865 # 1nznA.173.91 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 173 :QYNDYVRDL 1nznA 92 :KALKYVRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22866 # 2gmfA.173.104 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 173 :QYNDYVRDL 2gmfA 105 :SFKENLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22867 # 2f1rA.173.150 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 173 :QYNDYVRDL 2f1rA 151 :RIAEFILSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22868 # 1wwpA.173.104 read from T0287.t04.many.frag # found chain 1wwpA in template set T0287 173 :QYNDYVRDL 1wwpA 105 :DYARLMEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22869 # 1ro7A.173.113 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 173 :QYNDYVRDL 1ro7A 114 :DFNAYFKFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22870 # 1l5oA.173.211 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 173 :QYNDYVRDL 1l5oA 212 :NKVDVVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22871 # 1w9cA.173.303 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 173 :QYNDYVRDL 1w9cA 1010 :AFKEHLRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22872 # 1xdnA.173.82 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 173 :QYNDYVRDL 1xdnA 130 :EFTAQIRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22873 # 1wouA.173.47 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 173 :QYNDYVRDL 1wouA 48 :QAEPVVREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22874 # 1xodA.173.102 read from T0287.t04.many.frag # found chain 1xodA in training set T0287 173 :QYNDYVRDL 1xodA 108 :AFDRGIRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22875 # 1izmA.173.155 read from T0287.t04.many.frag # found chain 1izmA in template set T0287 173 :QYNDYVRDL 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22876 # 2d0tA.173.304 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 173 :QYNDY 2d0tA 302 :AHRNF T0287 180 :DL 2d0tA 309 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22878 # 1josA.173.72 read from T0287.t04.many.frag # found chain 1josA in training set T0287 173 :QYNDYVRDL 1josA 73 :KASPYIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22879 # 1tqhA.173.232 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 173 :QYNDYVRDL 1tqhA 233 :QLHEDIYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22880 # 1xrjA.173.219 read from T0287.t04.many.frag # found chain 1xrjA in template set T0287 173 :QYNDYVRDL 1xrjA 220 :LIVQHIQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22881 # 1jl0A.173.262 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 173 :QYNDYVRDL 1jl0A 263 :SYDDLIRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22882 # 1vliA.173.270 read from T0287.t04.many.frag # found chain 1vliA in template set T0287 173 :QYNDYVRDL 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22883 # 1f5qB.174.231 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 174 :YNDYVRDLL 1f5qB 232 :CCDLVDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22884 # 1ifqA.174.43 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 174 :YNDYVRDLL 1ifqA 33 :YQSQAKQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22885 # 1qwtA.174.235 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 174 :YNDYVRDLL 1qwtA 408 :YKAYLQDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22886 # 1b3tA.174.114 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 174 :YNDYVRDLL 1b3tA 575 :LKDAIKDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22887 # 1jl1A.174.132 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 174 :YNDYVRDLL 1jl1A 133 :ADELARAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22888 # 1z77A.174.127 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 174 :YNDYVRDLL 1z77A 128 :FFDFVREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22889 # 1xqwA.174.280 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 174 :YNDYVRDLL 1xqwA 281 :YNKLLSDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22890 # 1nznA.174.92 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 174 :YNDYVRDLL 1nznA 93 :ALKYVRGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22891 # 1vjuA.174.152 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 174 :YNDYVRDLL 1vjuA 153 :FHQVAQDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22892 # 2b61A.174.365 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 174 :YNDYVRDLL 2b61A 347 :FEKRIRDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22893 # 2gmfA.174.105 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 174 :YNDYVRDLL 2gmfA 106 :FKENLKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22894 # 1wzdA.174.171 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 174 :YNDYVRDLL 1wzdA 172 :YKDEYREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22895 # 1lvaA.174.203 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 174 :YNDYVRDLL 1lvaA 580 :AREVIKNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22896 # 1auoA.174.86 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 174 :YNDYVRDLL 1auoA 87 :SAKMVTDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22897 # 2f1rA.174.151 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 174 :YNDYVRDLL 2f1rA 152 :IAEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22898 # 1l5oA.174.212 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 174 :YNDYVRDLL 1l5oA 213 :KVDVVRRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22899 # 1w9cA.174.304 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 174 :YNDYVRDLL 1w9cA 1011 :FKEHLRDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22900 # 1wouA.174.48 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 174 :YNDYVRDLL 1wouA 49 :AEPVVREGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22901 # 1l5aA.174.297 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 174 :YNDYVRDLL 1l5aA 298 :SGQAIRSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22902 # 2a2mA.174.152 read from T0287.t04.many.frag # found chain 2a2mA in template set T0287 174 :YNDYVRDLL 2a2mA 141 :YADYEAYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22903 # 1uddA.174.112 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 174 :YNDYVRDLL 1uddA 113 :YMDFMLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22904 # 1qw9A.174.263 read from T0287.t04.many.frag # found chain 1qw9A in training set T0287 174 :YNDYVRDLL 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22905 # 2d0tA.174.305 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 174 :YNDY 2d0tA 303 :HRNF T0287 180 :DLL 2d0tA 309 :SLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22907 # 1xdnA.174.83 read from T0287.t04.many.frag # found chain 1xdnA in training set T0287 174 :YNDYVRDLL 1xdnA 131 :FTAQIRILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22908 # 1o6dA.174.82 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 174 :YNDYVRDLL 1o6dA 81 :FADFLKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22909 # 1izmA.174.156 read from T0287.t04.many.frag # found chain 1izmA in template set T0287 174 :YNDYVRDLL 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22910 # 1uh4A.174.444 read from T0287.t04.many.frag # found chain 1uh4A in template set T0287 174 :YNDYVRDLL 1uh4A 445 :FDSWLRGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22911 # 1ro7A.174.114 read from T0287.t04.many.frag # found chain 1ro7A in training set T0287 174 :YNDYVRDLL 1ro7A 115 :FNAYFKFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22912 # 1x38A.174.11 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 174 :YNDYVRDLL 1x38A 12 :VEDRVADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22913 # 1jl0A.174.263 read from T0287.t04.many.frag # found chain 1jl0A in training set T0287 174 :YNDYVRDLL 1jl0A 264 :YDDLIRKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22914 # 1f5qB.175.232 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 175 :NDYVRDLLM 1f5qB 233 :CDLVDIAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22915 # 1ifqA.175.44 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 175 :NDYVRDLLM 1ifqA 34 :QSQAKQLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22916 # 1b3tA.175.115 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 175 :NDYVRDLLM 1b3tA 576 :KDAIKDLVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22917 # 1xqwA.175.281 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 175 :NDYVRDLLM 1xqwA 282 :NKLLSDFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22918 # 2gmfA.175.106 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 175 :NDYVRDLLM 2gmfA 107 :KENLKDFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22919 # 1qwtA.175.236 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 175 :NDYVRDLLM 1qwtA 409 :KAYLQDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22920 # 1z77A.175.128 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 175 :NDYVRDLLM 1z77A 129 :FDFVREKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22921 # 1jl1A.175.133 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 175 :NDYVRDLLM 1jl1A 134 :DELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22922 # 1vjuA.175.153 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 175 :NDYVRDLLM 1vjuA 154 :HQVAQDLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22923 # 1nznA.175.93 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 175 :NDYVRDLLM 1nznA 94 :LKYVRGLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22924 # 1wzdA.175.172 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 175 :NDYVRDLLM 1wzdA 173 :KDEYREKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22925 # 2b61A.175.366 read from T0287.t04.many.frag # found chain 2b61A in template set T0287 175 :NDYVRDLLM 2b61A 348 :EKRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22926 # 1lvaA.175.204 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 175 :NDYVRDLLM 1lvaA 581 :REVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22927 # 1wouA.175.49 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 175 :NDYVRDLLM 1wouA 50 :EPVVREGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22928 # 1x38A.175.12 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 175 :NDYVRDLLM 1x38A 13 :EDRVADLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22929 # 1auoA.175.87 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 175 :NDYVRDLLM 1auoA 88 :AKMVTDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22930 # 1w9cA.175.305 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 175 :NDYVRDLLM 1w9cA 1012 :KEHLRDFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22931 # 1l5aA.175.298 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 175 :NDYVRDLLM 1l5aA 299 :GQAIRSLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22932 # 1l5oA.175.213 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 175 :NDYVRDLLM 1l5oA 214 :VDVVRRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22933 # 2f1rA.175.152 read from T0287.t04.many.frag # found chain 2f1rA in template set T0287 175 :NDYVRDLLM 2f1rA 153 :AEFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22934 # 1izmA.175.157 read from T0287.t04.many.frag # found chain 1izmA in template set T0287 175 :NDYVRDLLM 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22935 # 1xrjA.175.221 read from T0287.t04.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)M183 because last residue in template chain is (1xrjA)N230 T0287 175 :NDYVRDLL 1xrjA 222 :VQHIQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22936 # 1tqhA.175.234 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 175 :NDYVRDLLM 1tqhA 235 :HEDIYAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22937 # 2d0tA.175.306 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 175 :NDY 2d0tA 304 :RNF T0287 180 :DLLM 2d0tA 309 :SLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=22939 # 1tr9A.175.318 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 175 :NDYVRDLLM 1tr9A 318 :SANMQRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22940 # 1i60A.175.264 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 175 :NDYVRDLLM 1i60A 265 :KKTTVDVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22941 # 1uddA.175.113 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 175 :NDYVRDLLM 1uddA 114 :MDFMLATAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22942 # 1o6dA.175.83 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 175 :NDYVRDLLM 1o6dA 82 :ADFLKDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22943 # 1llfA.175.358 read from T0287.t04.many.frag # found chain 1llfA in training set T0287 175 :NDYVRDLLM 1llfA 359 :RAYFKQSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22944 # 1qw9A.175.264 read from T0287.t04.many.frag # found chain 1qw9A in training set T0287 175 :NDYVRDLLM 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22945 # 1ifqA.176.45 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 176 :DYVRDLLMK 1ifqA 35 :SQAKQLFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22946 # 1f5qB.176.233 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 176 :DYVRDLLMK 1f5qB 234 :DLVDIAIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22947 # 1b3tA.176.116 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 176 :DYVRDLLMK 1b3tA 577 :DAIKDLVMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22948 # 2gmfA.176.107 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 176 :DYVRDLLMK 2gmfA 108 :ENLKDFLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22949 # 1x38A.176.13 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 176 :DYVRDLLMK 1x38A 14 :DRVADLLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22950 # 1nznA.176.94 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 176 :DYVRDLLMK 1nznA 95 :KYVRGLLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22951 # 1wzdA.176.173 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 176 :DYVRDLLMK 1wzdA 174 :DEYREKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22952 # 1xqwA.176.282 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 176 :DYVRDLLMK 1xqwA 283 :KLLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22953 # 1qwtA.176.237 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 176 :DYVRDLLMK 1qwtA 410 :AYLQDLVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22954 # 1jl1A.176.134 read from T0287.t04.many.frag # found chain 1jl1A in training set Warning: unaligning (T0287)K184 (1jl1A)N143 because D (zeta) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 1jl1A 135 :ELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22955 # 1z77A.176.129 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 176 :DYVRDLLMK 1z77A 130 :DFVREKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22956 # 1vjuA.176.154 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 176 :DYVRDLLMK 1vjuA 155 :QVAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22957 # 2b61A.176.367 read from T0287.t04.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 2b61A 349 :KRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22958 # 1lvaA.176.205 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 176 :DYVRDLLMK 1lvaA 582 :EVIKNLAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=22959 # 1wouA.176.50 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 176 :DYVRDLLMK 1wouA 51 :PVVREGLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22960 # 1tr9A.176.319 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 176 :DYVRDLLMK 1tr9A 319 :ANMQRLIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22961 # 1l5aA.176.299 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 176 :DYVRDLLMK 1l5aA 300 :QAIRSLYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22962 # 1o6dA.176.84 read from T0287.t04.many.frag # found chain 1o6dA in training set T0287 176 :DYVRDLLMK 1o6dA 83 :DFLKDLEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22963 # 2d0tA.176.307 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. T0287 176 :DY 2d0tA 305 :NF T0287 180 :DLLM 2d0tA 309 :SLES Number of specific fragments extracted= 2 number of extra gaps= 2 total=22965 # 1w9cA.176.306 read from T0287.t04.many.frag # found chain 1w9cA in template set T0287 176 :DYVRDLLMK 1w9cA 1013 :EHLRDFLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22966 # 1uddA.176.114 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 176 :DYVRDLLMK 1uddA 115 :DFMLATAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22967 # 1tqhA.176.235 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 176 :DYVRDLLMK 1tqhA 236 :EDIYAFLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=22968 # 1i60A.176.265 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 176 :DYVRDLLMK 1i60A 266 :KTTVDVVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22969 # 1auoA.176.88 read from T0287.t04.many.frag # found chain 1auoA in training set T0287 176 :DYVRDLLMK 1auoA 89 :KMVTDLIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22970 # 1l5oA.176.214 read from T0287.t04.many.frag # found chain 1l5oA in training set T0287 176 :DYVRDLLMK 1l5oA 215 :DVVRRAIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22971 # 2f1rA.176.153 read from T0287.t04.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 176 :DYVRDLLM 2f1rA 154 :EFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22972 # 1llfA.176.359 read from T0287.t04.many.frag # found chain 1llfA in training set T0287 176 :DYVRDLLMK 1llfA 360 :AYFKQSFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22973 # 2arhA.176.171 read from T0287.t04.many.frag # found chain 2arhA in template set T0287 176 :DYVRDLLMK 2arhA 170 :KEFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22974 # 1ursA.176.216 read from T0287.t04.many.frag # found chain 1ursA in training set T0287 176 :DYVRDLLMK 1ursA 217 :TLMRDMVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22975 # 1yjsA.176.377 read from T0287.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)K184 (1yjsA)N386 because D (zeta) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 1yjsA 378 :AIIGLVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22976 # 1ifqA.177.46 read from T0287.t04.many.frag # found chain 1ifqA in template set T0287 177 :YVRDLLMKF 1ifqA 36 :QAKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22977 # 1f5qB.177.234 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 177 :YVRDLLMKF 1f5qB 235 :LVDIAIVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22978 # 1b3tA.177.117 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 177 :YVRDLLMKF 1b3tA 578 :AIKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22979 # 1wzdA.177.174 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 177 :YVRDLLMKF 1wzdA 175 :EYREKLNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22980 # 2gmfA.177.108 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 177 :YVRDLLMKF 2gmfA 109 :NLKDFLLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22981 # 1xqwA.177.283 read from T0287.t04.many.frag # found chain 1xqwA in template set T0287 177 :YVRDLLMKF 1xqwA 284 :LLSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22982 # 1x38A.177.14 read from T0287.t04.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)K184 (1x38A)R22 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1x38A 15 :RVADLLG T0287 185 :F 1x38A 23 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=22984 # 1qwtA.177.238 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 177 :YVRDLLMKF 1qwtA 411 :YLQDLVEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22985 # 1vjuA.177.155 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 177 :YVRDLLMKF 1vjuA 156 :VAQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22986 # 1z77A.177.130 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 177 :YVRDLLMKF 1z77A 131 :FVREKLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22987 # 1jl1A.177.135 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 177 :YVRDLLMKF 1jl1A 136 :LARAAAMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22988 # 2b61A.177.368 read from T0287.t04.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because last residue in template chain is (2b61A)N358 T0287 177 :YVRDLLM 2b61A 350 :RIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22989 # 1tqhA.177.236 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 177 :YVRDLLMKF 1tqhA 237 :DIYAFLESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22990 # 1n69A.177.58 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 177 :YVRDLLMKF 1n69A 57 :IAIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22991 # 1nznA.177.95 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 177 :YVRDLLMKF 1nznA 96 :YVRGLLQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22992 # 1lvaA.177.206 read from T0287.t04.many.frag # found chain 1lvaA in template set T0287 177 :YVRDLLMKF 1lvaA 583 :VIKNLASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22993 # 1tr9A.177.320 read from T0287.t04.many.frag # found chain 1tr9A in training set T0287 177 :YVRDLLMKF 1tr9A 320 :NMQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22994 # 1wouA.177.51 read from T0287.t04.many.frag # found chain 1wouA in training set T0287 177 :YVRDLLMKF 1wouA 52 :VVREGLKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22995 # 2b6cA.177.192 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 177 :YVRDLLMKF 2b6cA 190 :WVEELMKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22996 # 1q7eA.177.312 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 177 :YVRDLLMKF 1q7eA 313 :EIEKYTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22997 # 1llfA.177.360 read from T0287.t04.many.frag # found chain 1llfA in training set T0287 177 :YVRDLLMKF 1llfA 361 :YFKQSFIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22998 # 1yjsA.177.378 read from T0287.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)K184 (1yjsA)N386 because D (zeta) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1yjsA 379 :IIGLVLK T0287 185 :F 1yjsA 387 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23000 # 2arhA.177.172 read from T0287.t04.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 T0287 177 :YVRDLLMK 2arhA 171 :EFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23001 # 1uddA.177.115 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 177 :YVRDLLMKF 1uddA 116 :FMLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23002 # 1uteA.177.167 read from T0287.t04.many.frag # found chain 1uteA in training set T0287 177 :YVRDLLMKF 1uteA 168 :WIKKQLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23003 # 2d0tA.177.308 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 177 :Y 2d0tA 306 :F T0287 180 :DLLMKF 2d0tA 309 :SLESNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23005 # 1i60A.177.266 read from T0287.t04.many.frag # found chain 1i60A in training set T0287 177 :YVRDLLMKF 1i60A 267 :TTVDVVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23006 # 1ursA.177.217 read from T0287.t04.many.frag # found chain 1ursA in training set T0287 177 :YVRDLLMKF 1ursA 218 :LMRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23007 # 1colA.177.80 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 T0287 177 :YV 1colA 81 :AL T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=23009 # 2f1rA.177.154 read from T0287.t04.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 177 :YVRDLLM 2f1rA 155 :FILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23010 # 1f5qB.178.235 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 178 :VRDLLMKFD 1f5qB 236 :VDIAIVSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23011 # 1ifqA.178.47 read from T0287.t04.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1ifqA 37 :AKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23012 # 1x38A.178.15 read from T0287.t04.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)K184 (1x38A)R22 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1x38A 16 :VADLLG T0287 185 :FD 1x38A 23 :MT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23014 # 1wzdA.178.175 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 178 :VRDLLMKFD 1wzdA 176 :YREKLNNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23015 # 1n69A.178.59 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 178 :VRDLLMKFD 1n69A 58 :AIQMMMHMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23016 # 1b3tA.178.118 read from T0287.t04.many.frag # found chain 1b3tA in template set T0287 178 :VRDLLMKFD 1b3tA 579 :IKDLVMTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23017 # 2gmfA.178.109 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 178 :VRDLLMKFD 2gmfA 110 :LKDFLLVIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23018 # 1nznA.178.96 read from T0287.t04.many.frag # found chain 1nznA in template set T0287 178 :VRDLLMKFD 1nznA 97 :VRGLLQTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23019 # 2b6cA.178.193 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 178 :VRDLLMKFD 2b6cA 191 :VEELMKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23020 # 1qwtA.178.239 read from T0287.t04.many.frag # found chain 1qwtA in template set T0287 178 :VRDLLMKFD 1qwtA 412 :LQDLVEGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23021 # 1z77A.178.131 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 178 :VRDLLMKFD 1z77A 132 :VREKLKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23022 # 1jl1A.178.136 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 178 :VRDLLMKFD 1jl1A 137 :ARAAAMNPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23023 # 2d0tA.178.309 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 180 :DLLMKFD 2d0tA 309 :SLESNPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23024 # 1orc.178.6 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1orc 7 :LKDYAMRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23025 # 1vjuA.178.156 read from T0287.t04.many.frag # found chain 1vjuA in training set T0287 178 :VRDLLMKFD 1vjuA 157 :AQDLCKPFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23026 # 1tr9A.178.321 read from T0287.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 178 :VRDLLMKF 1tr9A 321 :MQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23027 # 1tqhA.178.237 read from T0287.t04.many.frag # found chain 1tqhA in training set T0287 178 :VRDLLMKFD 1tqhA 238 :IYAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23028 # 1yjsA.178.379 read from T0287.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)M183 (1yjsA)K385 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLL 1yjsA 380 :IGLVL T0287 184 :KFD 1yjsA 386 :NVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23030 # 1colA.178.81 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 178 :V 1colA 82 :L T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=23032 # 1xqwA.178.284 read from T0287.t04.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)D186 because last residue in template chain is (1xqwA)L293 T0287 178 :VRDLLMKF 1xqwA 285 :LSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23033 # 1uddA.178.116 read from T0287.t04.many.frag # found chain 1uddA in template set Warning: unaligning (T0287)D186 (1uddA)N125 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1uddA 117 :MLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23034 # 2arhA.178.173 read from T0287.t04.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 Warning: unaligning (T0287)D186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arhA)E180 T0287 178 :VRDLLMK 2arhA 172 :FEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23035 # 1yvrA.178.268 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 178 :VRDLLMKFD 1yvrA 269 :WKSLLQDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23036 # 1q7eA.178.313 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 178 :VRDLLMKFD 1q7eA 314 :IEKYTVTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23037 # 1vpjA.178.102 read from T0287.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1vpjA)T91 T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=23038 # 1j9lA.178.142 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 178 :VRDLLMKFD 1j9lA 143 :LIDFLKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23039 # 1bm8.178.79 read from T0287.t04.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1bm8 83 :AKQLAEKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23040 # 1fo8A.178.90 read from T0287.t04.many.frag # found chain 1fo8A in training set T0287 178 :VRDLLMKFD 1fo8A 195 :LGQIFHNFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23041 # 1wouA.178.52 read from T0287.t04.many.frag # found chain 1wouA in training set Warning: unaligning (T0287)K184 (1wouA)H59 because G (3-10) conformation "forbidden" or filtered. T0287 178 :VRDLLM 1wouA 53 :VREGLK T0287 185 :FD 1wouA 60 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23043 # 1ursA.178.218 read from T0287.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1ursA 219 :MRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23044 # 1n69A.179.60 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 179 :RDLLMKFDL 1n69A 59 :IQMMMHMQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23045 # 1f5qB.179.236 read from T0287.t04.many.frag # found chain 1f5qB in template set Warning: unaligning (T0287)K184 (1f5qB)S242 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 1f5qB 237 :DIAIV T0287 185 :FDL 1f5qB 243 :FDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23047 # 2b6cA.179.194 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 179 :RDLLMKFDL 2b6cA 192 :EELMKELVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23048 # 1x38A.179.16 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 179 :RDLLMKFDL 1x38A 17 :ADLLGRMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23049 # 1orc.179.7 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1orc 8 :KDYAMRF T0287 187 :L 1orc 16 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=23051 # 1wzdA.179.176 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 179 :RDLLMKFDL 1wzdA 177 :REKLNNLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23052 # 1uddA.179.117 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 179 :RDLLMKFDL 1uddA 118 :LATAYKGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23053 # 1ifqA.179.48 read from T0287.t04.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ifqA 38 :KQLFRKL T0287 187 :L 1ifqA 46 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=23055 # 1b3tA.179.119 read from T0287.t04.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)D186 (1b3tA)P587 because P (beta_P) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1b3tA 580 :KDLVMTK T0287 187 :L 1b3tA 588 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23057 # 1ucdA.179.105 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 179 :RDLLMKFDL 1ucdA 106 :VDMRNNYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23058 # 1colA.179.82 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :L 1colA 91 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=23060 # 1yvrA.179.269 read from T0287.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1yvrA 270 :KSLLQDM T0287 187 :L 1yvrA 278 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23062 # 1j9lA.179.143 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 179 :RDLLMKFDL 1j9lA 144 :IDFLKEFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23063 # 1bm8.179.80 read from T0287.t04.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1bm8 84 :KQLAEKF T0287 187 :L 1bm8 92 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23065 # 2gmfA.179.110 read from T0287.t04.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)D186 (2gmfA)P118 because P (beta_P) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 2gmfA 111 :KDFLLVI T0287 187 :L 2gmfA 119 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=23067 # 1zbxB.179.46 read from T0287.t04.many.frag # found chain 1zbxB in template set T0287 179 :RDLLMKFDL 1zbxB 526 :RAMIDQMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23068 # 1wkcA.179.10 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 179 :RDLLMKFDL 1wkcA 11 :RAAWRRLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23069 # 1ursA.179.219 read from T0287.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ursA 220 :RDMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=23071 # 1ty9A.179.132 read from T0287.t04.many.frag # found chain 1ty9A in training set T0287 179 :RDLLMKFDL 1ty9A 133 :DDAWLKRPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23072 # 1z77A.179.132 read from T0287.t04.many.frag # found chain 1z77A in template set T0287 179 :RDLLMKFDL 1z77A 133 :REKLKDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23073 # 1q7eA.179.314 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 179 :RDLLMKFDL 1q7eA 315 :EKYTVTIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23074 # 1jl1A.179.137 read from T0287.t04.many.frag # found chain 1jl1A in training set T0287 179 :RDLLMKFDL 1jl1A 138 :RAAAMNPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23075 # 1tqhA.179.238 read from T0287.t04.many.frag # found chain 1tqhA in training set Warning: unaligning (T0287)L187 because last residue in template chain is (1tqhA)W247 T0287 179 :RDLLMKFD 1tqhA 239 :YAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23076 # 1wusA.179.110 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1wusA 186 :RLALMQ T0287 186 :DL 1wusA 193 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23078 # 1vpjA.179.103 read from T0287.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=23079 # 1tr9A.179.322 read from T0287.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 179 :RDLLMKF 1tr9A 322 :QRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23080 # 2d0tA.179.310 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 180 :DLLMKFDL 2d0tA 309 :SLESNPSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23081 # 2lisA.179.89 read from T0287.t04.many.frag # found chain 2lisA in training set T0287 179 :RDLLMKFDL 2lisA 90 :AEIGRRIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23082 # 1t71A.179.141 read from T0287.t04.many.frag # found chain 1t71A in template set Warning: unaligning (T0287)F185 (1t71A)R148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1t71A)D149 because D (zeta) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1t71A 142 :KELILK T0287 187 :L 1t71A 150 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=23084 # 1yjsA.179.380 read from T0287.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)K184 (1yjsA)N386 because D (zeta) conformation "forbidden" or filtered. T0287 179 :RDLLM 1yjsA 381 :GLVLK T0287 185 :FDL 1yjsA 387 :VGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23086 # 1n69A.180.61 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 180 :DLLMKFDLE 1n69A 60 :QMMMHMQPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23087 # 1orc.180.8 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1orc 9 :DYAMRF T0287 187 :LE 1orc 16 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23089 # 1ucdA.180.106 read from T0287.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1ucdA 107 :DMRN T0287 185 :FDLE 1ucdA 112 :YDII Number of specific fragments extracted= 2 number of extra gaps= 1 total=23091 # 1colA.180.83 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LE 1colA 91 :AQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=23093 # 2b6cA.180.195 read from T0287.t04.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)E188 (2b6cA)S201 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 2b6cA 193 :ELMKELVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23094 # 1x38A.180.17 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 180 :DLLMKFDLE 1x38A 18 :DLLGRMTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23095 # 1uddA.180.118 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 180 :DLLMKFDLE 1uddA 119 :ATAYKGNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23096 # 1f5qB.180.237 read from T0287.t04.many.frag # found chain 1f5qB in template set T0287 180 :DLLMKFDLE 1f5qB 238 :IAIVSFDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23097 # 1q7eA.180.315 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 180 :DLLMKFDLE 1q7eA 316 :KYTVTIDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23098 # 1j9lA.180.144 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 180 :DLLMKFDLE 1j9lA 145 :DFLKEFDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23099 # 1zbxB.180.47 read from T0287.t04.many.frag # found chain 1zbxB in template set T0287 180 :DLLMKFDLE 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23100 # 1wzdA.180.177 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 180 :DLLMKFDLE 1wzdA 178 :EKLNNLELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23101 # 1wusA.180.111 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 180 :DLLMK 1wusA 187 :LALMQ T0287 186 :DLE 1wusA 193 :KLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23103 # 1yvrA.180.270 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 180 :DLLMKFDLE 1yvrA 271 :SLLQDMPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23104 # 1zi8A.180.85 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 180 :DLLMKFDLE 1zi8A 86 :KLWQAFDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=23105 # 1wkcA.180.11 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 180 :DLLMKFDLE 1wkcA 12 :AAWRRLDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23106 # 1ty9A.180.133 read from T0287.t04.many.frag # found chain 1ty9A in training set T0287 180 :DLLMKFDLE 1ty9A 134 :DAWLKRPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23107 # 1bm8.180.81 read from T0287.t04.many.frag # found chain 1bm8 in training set T0287 180 :DLLMKFDLE 1bm8 85 :QLAEKFSVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23108 # 1ifqA.180.49 read from T0287.t04.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ifqA 39 :QLFRKL T0287 187 :LE 1ifqA 46 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23110 # 1mzgA.180.94 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 180 :DLLMKFDLE 1mzgA 95 :QDIVNFDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23111 # 1b3tA.180.120 read from T0287.t04.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)E188 (1b3tA)P589 because C (cis) conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 1b3tA 581 :DLVMTKPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23112 # 1ursA.180.220 read from T0287.t04.many.frag # found chain 1ursA in training set T0287 180 :DLLMKFDLE 1ursA 221 :DMVSKYHWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23113 # 1j5sA.180.140 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 180 :DL 1j5sA 129 :KK T0287 184 :KFDLE 1j5sA 133 :EMTPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23115 # 2lisA.180.90 read from T0287.t04.many.frag # found chain 2lisA in training set T0287 180 :DLLMKFDLE 2lisA 91 :EIGRRIDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23116 # 1t77A.180.128 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 180 :DLLMKFDLE 1t77A 2204 :QLFKASNMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23117 # 1vpjA.180.104 read from T0287.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)E188 (1vpjA)M101 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 1vpjA 93 :KILEKVEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=23118 # 1rkxA.180.334 read from T0287.t04.many.frag # found chain 1rkxA in template set T0287 180 :DLLMKFDLE 1rkxA 335 :NWLSGTDMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23119 # 1pyaB.180.200 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 180 :DLLMKFDLE 1pyaB 283 :EIMENLTMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23120 # 1yo3A.180.39 read from T0287.t04.many.frag # found chain 1yo3A in training set T0287 180 :DLLMKFDLE 1yo3A 21 :QALQKYNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23121 # 2gmfA.180.111 read from T0287.t04.many.frag # found chain 2gmfA in template set T0287 180 :DLLMKFDLE 2gmfA 112 :DFLLVIPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23122 # 1n69A.181.62 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 181 :LLMKFDLEK 1n69A 61 :MMMHMQPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23123 # 1ucdA.181.107 read from T0287.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 181 :LLM 1ucdA 108 :MRN T0287 185 :FDLEK 1ucdA 112 :YDIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23125 # 1orc.181.9 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 181 :LLMKF 1orc 10 :YAMRF T0287 187 :LEK 1orc 16 :QTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23127 # 1colA.181.84 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)K184 (1colA)H88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLM 1colA 85 :AWK T0287 187 :LEK 1colA 91 :AQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23129 # 1q7eA.181.316 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 181 :LLMKFDLEK 1q7eA 317 :YTVTIDKHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23130 # 1x38A.181.18 read from T0287.t04.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)K184 (1x38A)R22 because G (3-10) conformation "forbidden" or filtered. T0287 181 :LLM 1x38A 19 :LLG T0287 185 :FDLEK 1x38A 23 :MTLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23132 # 2b6cA.181.196 read from T0287.t04.many.frag # found chain 2b6cA in template set T0287 181 :LLMKFDLEK 2b6cA 194 :LMKELVLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23133 # 1wusA.181.112 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1wusA 188 :ALMQ T0287 186 :DLEK 1wusA 193 :KLSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23135 # 1zi8A.181.86 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 181 :LLMKFDLEK 1zi8A 87 :LWQAFDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23136 # 1uddA.181.119 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 181 :LLMKFDLEK 1uddA 120 :TAYKGNIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23137 # 1mzgA.181.95 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 181 :LLMKFDLEK 1mzgA 96 :DIVNFDVRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23138 # 1j9lA.181.145 read from T0287.t04.many.frag # found chain 1j9lA in template set T0287 181 :LLMKFDLEK 1j9lA 146 :FLKEFDFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23139 # 1yvrA.181.271 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 181 :LLMKFDLEK 1yvrA 272 :LLQDMPLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23140 # 1wkcA.181.12 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 181 :LLMKFDLEK 1wkcA 13 :AWRRLDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23141 # 1pyaB.181.201 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 181 :LLMKFDLEK 1pyaB 284 :IMENLTMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23142 # 2b8nA.181.393 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)K184 (2b8nA)N385 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 181 :LLM 2b8nA 382 :YLK T0287 186 :DLEK 2b8nA 387 :DSYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23144 # 1zbxB.181.48 read from T0287.t04.many.frag # found chain 1zbxB in template set Warning: unaligning (T0287)D186 (1zbxB)N533 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1zbxB 528 :MIDQM T0287 187 :LEK 1zbxB 534 :LVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23146 # 1bm8.181.82 read from T0287.t04.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMKF 1bm8 86 :LAEKF T0287 187 :LEK 1bm8 92 :VYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23148 # 1fs1A.181.19 read from T0287.t04.many.frag # found chain 1fs1A in training set T0287 181 :LLMKFDLEK 1fs1A 120 :IFSCLCLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23149 # 1rz4A.181.107 read from T0287.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)K184 (1rz4A)T111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 181 :LLM 1rz4A 108 :LLE T0287 186 :DLEK 1rz4A 113 :HFQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23151 # 2d0tA.181.312 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 181 :LLMKFDLEK 2d0tA 310 :LESNPSVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23152 # 1rkxA.181.335 read from T0287.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 1rkxA 336 :WLS T0287 185 :FDLEK 1rkxA 340 :TDMHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23154 # 2c1lA.181.146 read from T0287.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 2c1lA 147 :QSM T0287 185 :FDLEK 2c1lA 151 :FSWND Number of specific fragments extracted= 2 number of extra gaps= 1 total=23156 # 1t77A.181.129 read from T0287.t04.many.frag # found chain 1t77A in template set T0287 181 :LLMKFDLEK 1t77A 2205 :LFKASNMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23157 # 1r5yA.181.363 read from T0287.t04.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1r5yA 364 :SISE T0287 186 :DLEK 1r5yA 369 :RFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23159 # 1j5sA.181.141 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 181 :L 1j5sA 130 :K T0287 184 :KFDLEK 1j5sA 133 :EMTPQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23161 # 1ty9A.181.134 read from T0287.t04.many.frag # found chain 1ty9A in training set T0287 181 :LLMKFDLEK 1ty9A 135 :AWLKRPYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23162 # 1wzdA.181.178 read from T0287.t04.many.frag # found chain 1wzdA in template set T0287 181 :LLMKFDLEK 1wzdA 179 :KLNNLELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23163 # 1vk9A.181.130 read from T0287.t04.many.frag # found chain 1vk9A in template set T0287 181 :LLMKFDLEK 1vk9A 119 :VLEMDDPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23164 # 1yo3A.181.40 read from T0287.t04.many.frag # found chain 1yo3A in training set T0287 181 :LLMKFDLEK 1yo3A 22 :ALQKYNVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23165 # 1n69A.182.63 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 182 :LMKFDLEKY 1n69A 62 :MMHMQPKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23166 # 1ucdA.182.108 read from T0287.t04.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LM 1ucdA 109 :RN T0287 185 :FDLEKY 1ucdA 112 :YDIIGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23168 # 1orc.182.10 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 182 :LMKF 1orc 11 :AMRF T0287 187 :LEKY 1orc 16 :QTKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23170 # 1colA.182.85 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 182 :LMK 1colA 86 :WKH T0287 187 :LEKY 1colA 91 :AQDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=23172 # 1q7eA.182.317 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 182 :LMKFDLEKY 1q7eA 318 :TVTIDKHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23173 # 1wusA.182.113 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1wusA 189 :LMQ T0287 186 :DLEKY 1wusA 193 :KLSEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23175 # 1j2rA.182.117 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 182 :LMKFDLEKY 1j2rA 118 :FYGTDLELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23176 # 2c1lA.182.147 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 182 :LMKFDLEKY 2c1lA 148 :SMGFSWNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23177 # 1zi8A.182.87 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 182 :LMKFDLEKY 1zi8A 88 :WQAFDMEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23178 # 1mzgA.182.96 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 182 :LMKFDLEKY 1mzgA 97 :IVNFDVRPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23179 # 1pyaB.182.202 read from T0287.t04.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1pyaB 285 :MENL T0287 187 :LEKY 1pyaB 290 :MPEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=23181 # 1x38A.182.19 read from T0287.t04.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)D186 (1x38A)T24 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1x38A 20 :LGRM T0287 187 :LEKY 1x38A 25 :LAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23183 # 2b8nA.182.394 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 2b8nA 383 :LKN T0287 186 :DLEKY 2b8nA 387 :DSYNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23185 # 1rz4A.182.108 read from T0287.t04.many.frag # found chain 1rz4A in template set T0287 182 :LMKFDLEKY 1rz4A 109 :LETCHFQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23186 # 2d0tA.182.313 read from T0287.t04.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LM 2d0tA 311 :ES T0287 185 :FDLEKY 2d0tA 314 :PSVREF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23188 # 1yvrA.182.272 read from T0287.t04.many.frag # found chain 1yvrA in template set T0287 182 :LMKFDLEKY 1yvrA 273 :LQDMPLTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23189 # 1xcrA.182.75 read from T0287.t04.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)K184 (1xcrA)V77 because E (beta_S) conformation "forbidden" or filtered. T0287 182 :LM 1xcrA 75 :KK T0287 185 :FDLEKY 1xcrA 78 :YDLNKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23191 # 1rkxA.182.336 read from T0287.t04.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 1rkxA 337 :LS T0287 185 :FDLEKY 1rkxA 340 :TDMHEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23193 # 1qouA.182.146 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 1qouA 146 :RD T0287 185 :FDLEKY 1qouA 149 :FNTRKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23195 # 1uddA.182.120 read from T0287.t04.many.frag # found chain 1uddA in template set T0287 182 :LMKFDLEKY 1uddA 121 :AYKGNIIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23196 # 1wkcA.182.13 read from T0287.t04.many.frag # found chain 1wkcA in training set T0287 182 :LMKFDLEKY 1wkcA 14 :WRRLDLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23197 # 1ujpA.182.236 read from T0287.t04.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ujpA)S241 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LM 1ujpA 237 :EE T0287 185 :F 1ujpA 240 :R T0287 187 :LEKY 1ujpA 242 :LAPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23200 # 1j5sA.182.142 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEKY 1j5sA 136 :PQKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23202 # 1sa3A.182.127 read from T0287.t04.many.frag # found chain 1sa3A in template set T0287 182 :LMKFDLEKY 1sa3A 128 :IAEYDVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23203 # 1r5yA.182.364 read from T0287.t04.many.frag # found chain 1r5yA in training set T0287 182 :LMKFDLEKY 1r5yA 365 :ISEGRFSQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23204 # 1vk9A.182.131 read from T0287.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0287)M183 (1vk9A)E121 because G (3-10) conformation "forbidden" or filtered. T0287 182 :L 1vk9A 120 :L T0287 184 :KFDLEKY 1vk9A 122 :MDDPEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23206 # 1fs1A.182.20 read from T0287.t04.many.frag # found chain 1fs1A in training set T0287 182 :LMKFDLEKY 1fs1A 121 :FSCLCLPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23207 # 1fs7A.182.431 read from T0287.t04.many.frag # found chain 1fs7A in training set Warning: unaligning (T0287)K184 (1fs7A)K456 because L (left) conformation "forbidden" or filtered. T0287 182 :LM 1fs7A 454 :LA T0287 185 :FDLEKY 1fs7A 457 :VDMEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23209 # 2cwcA.182.178 read from T0287.t04.many.frag # found chain 2cwcA in template set Warning: unaligning (T0287)D186 (2cwcA)P183 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 2cwcA 179 :LRGA T0287 187 :LEKY 2cwcA 184 :KEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23211 # 1j1jA.182.87 read from T0287.t04.many.frag # found chain 1j1jA in template set Warning: unaligning (T0287)D186 (1j1jA)P80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K189 (1j1jA)Q83 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LMKF 1j1jA 76 :KTKF T0287 187 :LE 1j1jA 81 :AE T0287 190 :Y 1j1jA 84 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=23214 # 1n69A.183.64 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :MKF 1n69A 63 :MHM T0287 187 :LEKYM 1n69A 67 :PKEIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=23216 # 1orc.183.11 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 183 :MKF 1orc 12 :MRF T0287 187 :LEKYM 1orc 16 :QTKTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23218 # 1ucdA.183.109 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 183 :MKFDLEKYM 1ucdA 110 :NNYDIIGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23219 # 1qouA.183.147 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)D186 (1qouA)N150 because D (zeta) conformation "forbidden" or filtered. T0287 183 :MKF 1qouA 147 :DGF T0287 187 :LEKYM 1qouA 151 :TRKFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23221 # 1colA.183.86 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 183 :MK 1colA 87 :KH T0287 187 :LEKYM 1colA 91 :AQDMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23223 # 1oz2A.183.223 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 420 :DNFCWEKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23224 # 1j2rA.183.118 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 183 :MKFDLEKYM 1j2rA 119 :YGTDLELQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23225 # 1pyaB.183.203 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 183 :MKFDLEKYM 1pyaB 286 :ENLTMPEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23226 # 2c1lA.183.148 read from T0287.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 2c1lA 149 :M T0287 185 :FDLEKYM 2c1lA 151 :FSWNDMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23228 # 1xcrA.183.76 read from T0287.t04.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :MKF 1xcrA 76 :KVY T0287 187 :LEKYM 1xcrA 80 :LNKIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23230 # 1q7eA.183.318 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 183 :MKFDLEKYM 1q7eA 319 :VTIDKHEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23231 # 1wusA.183.114 read from T0287.t04.many.frag # found chain 1wusA in template set T0287 183 :MKFDLEKYM 1wusA 190 :MQKKLSEYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23232 # 2b8nA.183.395 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 2b8nA 384 :KN T0287 186 :DLEKYM 2b8nA 387 :DSYNAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23234 # 2d0tA.183.314 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 183 :MKFDLEKYM 2d0tA 312 :SNPSVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23235 # 1mzgA.183.97 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 183 :MKFDLEKYM 1mzgA 98 :VNFDVRPWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23236 # 1sa3A.183.128 read from T0287.t04.many.frag # found chain 1sa3A in template set T0287 183 :MKFDLEKYM 1sa3A 129 :AEYDVETIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23237 # 1l3lA.183.186 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)M183 (1l3lA)V187 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K184 (1l3lA)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 185 :FDLEKYM 1l3lA 189 :KTMEEIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23238 # 1rz4A.183.109 read from T0287.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1rz4A 110 :ET T0287 186 :DLEKYM 1rz4A 113 :HFQAFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=23240 # 1zi8A.183.88 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 183 :MKFDLEKYM 1zi8A 89 :QAFDMEAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23241 # 1l5aA.183.308 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 183 :MKFDLEKYM 1l5aA 309 :GRYRIEQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23242 # 1x38A.183.20 read from T0287.t04.many.frag # found chain 1x38A in template set T0287 183 :MKFDLEKYM 1x38A 21 :GRMTLAEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23243 # 1ujpA.183.237 read from T0287.t04.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 183 :M 1ujpA 238 :E T0287 185 :FDLEKYM 1ujpA 240 :RSLAPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23245 # 1uocA.183.224 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 T0287 185 :FDLEKYM 1uocA 227 :YSLTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23246 # 1rkxA.183.337 read from T0287.t04.many.frag # found chain 1rkxA in template set T0287 183 :MKFDLEKYM 1rkxA 338 :SGTDMHEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23247 # 1r5yA.183.365 read from T0287.t04.many.frag # found chain 1r5yA in training set T0287 183 :MKFDLEKYM 1r5yA 366 :SEGRFSQFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23248 # 1yvrA.183.273 read from T0287.t04.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :MKF 1yvrA 274 :QDM T0287 187 :LEKYM 1yvrA 278 :LTALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23250 # 1o2dA.183.311 read from T0287.t04.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K184 (1o2dA)G301 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1o2dA 300 :F T0287 186 :DLEKYM 1o2dA 303 :SLLKFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23252 # 1oz2A.183.115 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 183 :MKFDLEKYM 1oz2A 312 :EEFSWSQYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23253 # 1j5sA.183.143 read from T0287.t04.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 184 :KFDLEKYM 1j5sA 133 :EMTPQKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23254 # 1vk4A.183.258 read from T0287.t04.many.frag # found chain 1vk4A in template set T0287 183 :MKFDLEKYM 1vk4A 247 :KKMSIEKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23255 # 1n69A.184.65 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 184 :KFDLEKYMK 1n69A 64 :HMQPKEICA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23256 # 1qouA.184.148 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 184 :KFDLEKYMK 1qouA 148 :GFNTRKFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23257 # 1oz2A.184.224 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 421 :NFCWEKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23258 # 1orc.184.12 read from T0287.t04.many.frag # found chain 1orc in training set T0287 184 :KFDLEKYMK 1orc 13 :RFGQTKTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23259 # 1j2rA.184.119 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 184 :KFDLEKYMK 1j2rA 120 :GTDLELQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23260 # 2c1lA.184.149 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 184 :KFDLEKYMK 2c1lA 150 :GFSWNDMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23261 # 1pyaB.184.204 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 184 :KFDLEKYMK 1pyaB 287 :NLTMPEWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23262 # 1xcrA.184.77 read from T0287.t04.many.frag # found chain 1xcrA in template set T0287 184 :KFDLEKYMK 1xcrA 77 :VYDLNKIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23263 # 1ucdA.184.110 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 184 :KFDLEKYMK 1ucdA 111 :NYDIIGALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23264 # 1o2dA.184.312 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 184 :KFDLEKYMK 1o2dA 301 :GGSLLKFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23265 # 1wusA.184.115 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1wusA 191 :Q T0287 186 :DLEKYMK 1wusA 193 :KLSEYMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23267 # 2d0tA.184.315 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 184 :KFDLEKYMK 2d0tA 313 :NPSVREFVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23268 # 1colA.184.87 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 184 :K 1colA 88 :H T0287 187 :LEKYMK 1colA 91 :AQDMAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23270 # 1l5aA.184.309 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 184 :KFDLEKYMK 1l5aA 310 :RYRIEQIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23271 # 1l3lA.184.187 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 184 :KFDLEKYMK 1l3lA 188 :GKTMEEIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23272 # 1oz2A.184.116 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 313 :EFSWSQYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23273 # 2b8nA.184.396 read from T0287.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 184 :K 2b8nA 385 :N T0287 186 :DLEKYMK 2b8nA 387 :DSYNALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23275 # 1mzgA.184.98 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 184 :KFDLEKYMK 1mzgA 99 :NFDVRPWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23276 # 1f86A.184.62 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 184 :KFDLEKYMK 1f86A 72 :EIDTKSYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23277 # 1ywfA.184.269 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 184 :KF 1ywfA 250 :YG T0287 187 :LEKYMK 1ywfA 253 :LGGYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23279 # 1j54A.184.141 read from T0287.t04.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)K184 (1j54A)R142 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1j54A 143 :NSLDALCA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23280 # 1ujpA.184.238 read from T0287.t04.many.frag # found chain 1ujpA in training set T0287 184 :KFDLEKYMK 1ujpA 239 :GRSLAPLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23281 # 1sa3A.184.129 read from T0287.t04.many.frag # found chain 1sa3A in template set T0287 184 :KFDLEKYMK 1sa3A 130 :EYDVETICT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23282 # 1uocA.184.225 read from T0287.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 Warning: unaligning (T0287)D186 (1uocA)S228 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1uocA 227 :Y T0287 187 :LEKYMK 1uocA 229 :LTTLAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23284 # 1r5yA.184.366 read from T0287.t04.many.frag # found chain 1r5yA in training set T0287 184 :KFDLEKYMK 1r5yA 367 :EGRFSQFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23285 # 1rz4A.184.110 read from T0287.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1rz4A 111 :T T0287 186 :DLEKYMK 1rz4A 113 :HFQAFWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23287 # 1mtyG.184.145 read from T0287.t04.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)D186 (1mtyG)P151 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1mtyG 149 :DT T0287 187 :LEKYMK 1mtyG 152 :LEELRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23289 # 1zi8A.184.89 read from T0287.t04.many.frag # found chain 1zi8A in template set T0287 184 :KFDLEKYMK 1zi8A 90 :AFDMEAGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23290 # 1j5sA.184.144 read from T0287.t04.many.frag # found chain 1j5sA in template set T0287 184 :KFDLEKYMK 1j5sA 133 :EMTPQKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23291 # 1q7eA.184.319 read from T0287.t04.many.frag # found chain 1q7eA in training set T0287 184 :KFDLEKYMK 1q7eA 320 :TIDKHEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23292 # 1oz2A.185.225 read from T0287.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)C423 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :F 1oz2A 422 :F T0287 187 :LEKYMKE 1oz2A 424 :WEKYLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23294 # 1qouA.185.149 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 185 :FDLEKYMKE 1qouA 149 :FNTRKFTQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23295 # 1pyaB.185.205 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 185 :FDLEKYMKE 1pyaB 288 :LTMPEWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23296 # 1n69A.185.66 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 185 :FDLEKYMKE 1n69A 65 :MQPKEICAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23297 # 1j2rA.185.120 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 185 :FDLEKYMKE 1j2rA 121 :TDLELQLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23298 # 1orc.185.13 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 185 :F 1orc 14 :F T0287 187 :LEKYMKE 1orc 16 :QTKTAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23300 # 2c1lA.185.150 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 185 :FDLEKYMKE 2c1lA 151 :FSWNDMISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23301 # 1ywfA.185.270 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)F185 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1ywfA 252 :SLGGYLRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23302 # 1o2dA.185.313 read from T0287.t04.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1o2dA 303 :SLLKFLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=23303 # 1oz2A.185.117 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 314 :FSWSQYLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23304 # 1l5aA.185.310 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 185 :FDLEKYMKE 1l5aA 311 :YRIEQIEQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23305 # 1xcrA.185.78 read from T0287.t04.many.frag # found chain 1xcrA in template set T0287 185 :FDLEKYMKE 1xcrA 78 :YDLNKIAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23306 # 1f86A.185.63 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 185 :FDLEKYMKE 1f86A 73 :IDTKSYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23307 # 1wusA.185.116 read from T0287.t04.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1wusA 193 :KLSEYMKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23308 # 1j54A.185.142 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 185 :FDLEKYMKE 1j54A 143 :NSLDALCAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23309 # 1mtyG.185.146 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 185 :FDLEKYMKE 1mtyG 150 :TPLEELRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23310 # 1uocA.185.226 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 185 :FDLEKYMKE 1uocA 227 :YSLTTLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23311 # 2d0tA.185.316 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 185 :FDLEKYMKE 2d0tA 314 :PSVREFVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23312 # 1ucdA.185.111 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 185 :FDLEKYMKE 1ucdA 112 :YDIIGALRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23313 # 2c71A.185.182 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 185 :FDLEKYMKE 2c71A 658 :VTLTELFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23314 # 1l3lA.185.188 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 185 :FDLEKYMKE 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23315 # 1wkqA.185.119 read from T0287.t04.many.frag # found chain 1wkqA in training set T0287 185 :FDLEKYMKE 1wkqA 112 :FDDSFIYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23316 # 1sa3A.185.130 read from T0287.t04.many.frag # found chain 1sa3A in template set T0287 185 :FDLEKYMKE 1sa3A 131 :YDVETICTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23317 # 1ujpA.185.239 read from T0287.t04.many.frag # found chain 1ujpA in training set T0287 185 :FDLEKYMKE 1ujpA 240 :RSLAPLLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23318 # 1um0A.185.103 read from T0287.t04.many.frag # found chain 1um0A in template set T0287 185 :FDLEKYMKE 1um0A 104 :HADFTYFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23319 # 1w5rA.185.5 read from T0287.t04.many.frag # found chain 1w5rA in template set Warning: unaligning (T0287)F185 because first residue in template chain is (1w5rA)M3 T0287 186 :DLEKYMKE 1w5rA 4 :DLGGYLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23320 # 1rz4A.185.111 read from T0287.t04.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)D186 (1rz4A)H113 because N (gamma') conformation "forbidden" or filtered. T0287 185 :F 1rz4A 112 :C T0287 187 :LEKYMKE 1rz4A 114 :FQAFWQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23322 # 1colA.185.88 read from T0287.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 187 :LEKYMKE 1colA 91 :AQDMANK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23323 # 1mzgA.185.99 read from T0287.t04.many.frag # found chain 1mzgA in template set T0287 185 :FDLEKYMKE 1mzgA 100 :FDVRPWFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23324 # 1ifc.185.12 read from T0287.t04.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 185 :F 1ifc 12 :E T0287 187 :LEKYMKE 1ifc 14 :YEKFMEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23326 # 1oz2A.186.226 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 423 :CWEKYLEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=23327 # 1qouA.186.150 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 186 :DLEKYMKEK 1qouA 150 :NTRKFTQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23328 # 1pyaB.186.206 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 186 :DLEKYMKEK 1pyaB 289 :TMPEWLEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23329 # 1o2dA.186.314 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 186 :DLEKYMKEK 1o2dA 303 :SLLKFLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23330 # 1j2rA.186.121 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 186 :DLEKYMKEK 1j2rA 122 :DLELQLRRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23331 # 1ywfA.186.271 read from T0287.t04.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K194 (1ywfA)A260 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1ywfA 253 :LGGYLRD Number of specific fragments extracted= 1 number of extra gaps= 2 total=23332 # 1orc.186.14 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1orc 16 :QTKTAKDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23333 # 1n69A.186.67 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1n69A 67 :PKEICALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23334 # 2c1lA.186.151 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 186 :DLEKYMKEK 2c1lA 152 :SWNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23335 # 1oz2A.186.118 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 315 :SWSQYLRST Number of specific fragments extracted= 1 number of extra gaps= 0 total=23336 # 1xcrA.186.79 read from T0287.t04.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1xcrA 80 :LNKIAKEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23337 # 1l5aA.186.311 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 186 :DLEKYMKEK 1l5aA 312 :RIEQIEQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23338 # 1f86A.186.64 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 186 :DLEKYMKEK 1f86A 74 :DTKSYWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23339 # 1j54A.186.143 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 186 :DLEKYMKEK 1j54A 144 :SLDALCARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23340 # 1mtyG.186.147 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 186 :DLEKYMKEK 1mtyG 151 :PLEELRKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23341 # 2d0tA.186.317 read from T0287.t04.many.frag # found chain 2d0tA in template set T0287 186 :DLEKYMKEK 2d0tA 315 :SVREFVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23342 # 2c71A.186.183 read from T0287.t04.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)D186 (2c71A)T659 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2c71A 660 :LTELFTLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23343 # 1jr2A.186.170 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 186 :DLEKYMKEK 1jr2A 150 :ILPKALKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23344 # 1wusA.186.117 read from T0287.t04.many.frag # found chain 1wusA in template set T0287 186 :DLEKYMKEK 1wusA 193 :KLSEYMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23345 # 1uocA.186.227 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 186 :DLEKYMKEK 1uocA 228 :SLTTLADEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23346 # 1jubA.186.287 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 186 :DLEKYMKEK 1jubA 288 :ELEEIMNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23347 # 1vbkA.186.245 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 186 :DLEKYMKEK 1vbkA 246 :RVLKLIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23348 # 1ucdA.186.112 read from T0287.t04.many.frag # found chain 1ucdA in training set T0287 186 :DLEKYMKEK 1ucdA 113 :DIIGALRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23349 # 1ifc.186.13 read from T0287.t04.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ifc 14 :YEKFMEKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23350 # 1um0A.186.104 read from T0287.t04.many.frag # found chain 1um0A in template set T0287 186 :DLEKYMKEK 1um0A 105 :ADFTYFHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23351 # 1mtpA.186.263 read from T0287.t04.many.frag # found chain 1mtpA in training set T0287 186 :DLEKYMKEK 1mtpA 266 :QLVEVLAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23352 # 1zsqA.186.140 read from T0287.t04.many.frag # found chain 1zsqA in template set T0287 186 :DLEKYMKEK 1zsqA 210 :DPLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23353 # 1od6A.186.72 read from T0287.t04.many.frag # found chain 1od6A in training set T0287 186 :DLEKYMKEK 1od6A 73 :LLVDFVRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23354 # 2b8nA.186.398 read from T0287.t04.many.frag # found chain 2b8nA in template set T0287 186 :DLEKYMKEK 2b8nA 387 :DSYNALKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23355 # 1ko6A.186.157 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 186 :DLEKYMKEK 1ko6A 834 :RLEAVSRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23356 # 1oz2A.187.227 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 424 :WEKYLEETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23357 # 1o2dA.187.315 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 187 :LEKYMKEKG 1o2dA 304 :LLKFLKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23358 # 1ywfA.187.272 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 187 :LEKYMKEKG 1ywfA 253 :LGGYLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23359 # 1qouA.187.151 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 187 :LEKYMKEKG 1qouA 151 :TRKFTQENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23360 # 1pyaB.187.207 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 187 :LEKYMKEKG 1pyaB 290 :MPEWLEKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23361 # 1j2rA.187.122 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 187 :LEKYMKEKG 1j2rA 123 :LELQLRRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23362 # 1l5aA.187.312 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 187 :LEKYMKEKG 1l5aA 313 :IEQIEQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23363 # 1f86A.187.65 read from T0287.t04.many.frag # found chain 1f86A in training set Warning: unaligning (T0287)K194 (1f86A)L82 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1f86A 75 :TKSYWKA T0287 195 :G 1f86A 83 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23365 # 1n69A.187.68 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 187 :LEKYMKEKG 1n69A 67 :PKEICALVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23366 # 1orc.187.15 read from T0287.t04.many.frag # found chain 1orc in training set T0287 187 :LEKYMKEKG 1orc 16 :QTKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23367 # 1j54A.187.144 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 187 :LEKYMKEKG 1j54A 145 :LDALCARYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23368 # 1mtyG.187.148 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 187 :LEKYMKEKG 1mtyG 152 :LEELRKQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23369 # 1oz2A.187.119 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 316 :WSQYLRSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23370 # 2c71A.187.184 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 187 :LEKYMKEKG 2c71A 660 :LTELFTLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23371 # 1jr2A.187.171 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 187 :LEKYMKEKG 1jr2A 151 :LPKALKDKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23372 # 1vbkA.187.246 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 187 :LEKYMKEKG 1vbkA 247 :VLKLIRDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23373 # 1xcrA.187.80 read from T0287.t04.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)K194 (1xcrA)I87 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1xcrA 80 :LNKIAKE T0287 195 :G 1xcrA 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=23375 # 1jubA.187.288 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 187 :LEKYMKEKG 1jubA 289 :LEEIMNQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23376 # 2c1lA.187.152 read from T0287.t04.many.frag # found chain 2c1lA in template set T0287 187 :LEKYMKEKG 2c1lA 153 :WNDMISEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=23377 # 1zsqA.187.141 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 T0287 187 :LEKYMKEK 1zsqA 211 :PLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23378 # 1e5kA.187.156 read from T0287.t04.many.frag # found chain 1e5kA in training set T0287 187 :LEKYMKEKG 1e5kA 157 :VMVFMRLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23379 # 1ux5A.187.359 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 187 :LEKYMKEKG 1ux5A 1709 :FESLMHTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23380 # 1i0dA.187.298 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 187 :LEKYMKEKG 1i0dA 332 :VIPFLREKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23381 # 1u4bA.187.514 read from T0287.t04.many.frag # found chain 1u4bA in training set T0287 187 :LEKYMKEKG 1u4bA 811 :LNARLKEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=23382 # 1l3lA.187.190 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 187 :LEKYMKEKG 1l3lA 191 :MEEIADVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23383 # 1w6gA.187.115 read from T0287.t04.many.frag # found chain 1w6gA in template set T0287 187 :LEKYMKEKG 1w6gA 118 :WLKALAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23384 # 1ko6A.187.158 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 187 :LEKYMKEKG 1ko6A 835 :LEAVSRKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23385 # 2bdeA.187.283 read from T0287.t04.many.frag # found chain 2bdeA in template set T0287 187 :LEKYMKEKG 2bdeA 284 :AKKFTEDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23386 # 1t0fC.187.32 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 187 :LEKYMKEKG 1t0fC 534 :MHERLKGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23387 # 1uocA.187.228 read from T0287.t04.many.frag # found chain 1uocA in template set T0287 187 :LEKYMKEKG 1uocA 229 :LTTLADELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23388 # 1oz2A.188.228 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 425 :EKYLEETGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23389 # 1j2rA.188.123 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 188 :EKYMKEKGV 1j2rA 124 :ELQLRRRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23390 # 1o2dA.188.316 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 188 :EKYMKEKGV 1o2dA 305 :LKFLKELGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23391 # 1qouA.188.152 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 188 :EKYMKEKGV 1qouA 152 :RKFTQENEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23392 # 1ywfA.188.273 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 188 :EKYMKEKGV 1ywfA 254 :GGYLRDAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23393 # 1pyaB.188.208 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 188 :EKYMKEKGV 1pyaB 291 :PEWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23394 # 1l5aA.188.313 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 188 :EKYMKEKGV 1l5aA 314 :EQIEQDQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23395 # 1i0dA.188.299 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 188 :EKYMKEKGV 1i0dA 333 :IPFLREKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23396 # 1mtyG.188.149 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 188 :EKYMKEKGV 1mtyG 153 :EELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23397 # 1n69A.188.69 read from T0287.t04.many.frag # found chain 1n69A in template set T0287 188 :EKYMKEKGV 1n69A 68 :KEICALVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23398 # 1jr2A.188.172 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 188 :EKYMKEKGV 1jr2A 152 :PKALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23399 # 1jubA.188.289 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 188 :EKYMKEKGV 1jubA 290 :EEIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23400 # 1j54A.188.145 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 188 :EKYMKEKGV 1j54A 146 :DALCARYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23401 # 1f86A.188.66 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 188 :EKYMKEKGV 1f86A 76 :KSYWKALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23402 # 2nacA.188.167 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 188 :EKYMKEKGV 2nacA 168 :SHEWARKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23403 # 1ko6A.188.159 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 188 :EKYMKEKGV 1ko6A 836 :EAVSRKQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23404 # 1t0fC.188.33 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 188 :EKYMKEKGV 1t0fC 535 :HERLKGKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23405 # 2c71A.188.185 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 188 :EKYMKEKGV 2c71A 661 :TELFTLKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23406 # 1orc.188.16 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 T0287 188 :EKYMKEKG 1orc 17 :TKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23407 # 1u4bA.188.515 read from T0287.t04.many.frag # found chain 1u4bA in training set T0287 188 :EKYMKEKGV 1u4bA 812 :NARLKEERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23408 # 1vbkA.188.247 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 188 :EKYMKEKGV 1vbkA 248 :LKLIRDFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23409 # 1zsqA.188.142 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 T0287 188 :EKYMKEK 1zsqA 212 :LLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23410 # 1e5kA.188.157 read from T0287.t04.many.frag # found chain 1e5kA in training set T0287 188 :EKYMKEKGV 1e5kA 158 :MVFMRLAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23411 # 1lxjA.188.63 read from T0287.t04.many.frag # found chain 1lxjA in training set T0287 188 :EKYMKEKGV 1lxjA 64 :HEYGHEKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23412 # 1nuuA.188.223 read from T0287.t04.many.frag # found chain 1nuuA in template set T0287 188 :EKYMKEKGV 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23413 # 1oz2A.188.120 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 317 :SQYLRSTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23414 # 1l1sA.188.72 read from T0287.t04.many.frag # found chain 1l1sA in template set T0287 188 :EKYMKEKGV 1l1sA 73 :SNTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23415 # 1l3lA.188.191 read from T0287.t04.many.frag # found chain 1l3lA in training set T0287 188 :EKYMKEKGV 1l3lA 192 :EEIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23416 # 2d1pB.188.79 read from T0287.t04.many.frag # found chain 2d1pB in template set T0287 188 :EKYMKEKGV 2d1pB 80 :AASLRERGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23417 # 1ux5A.188.360 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 188 :EKYMKEKGV 1ux5A 1710 :ESLMHTYGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23418 # 1j2rA.189.124 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 189 :KYMKEKGVQ 1j2rA 125 :LQLRRRGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23419 # 1oz2A.189.229 read from T0287.t04.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)Q197 (1oz2A)S434 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1oz2A 426 :KYLEETGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23420 # 1o2dA.189.317 read from T0287.t04.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K194 (1o2dA)L311 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1o2dA 306 :KFLKE T0287 195 :GVQ 1o2dA 312 :GLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23422 # 1ywfA.189.274 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 189 :KYMKEKGVQ 1ywfA 255 :GYLRDAGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23423 # 1pyaB.189.209 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 189 :KYMKEKGVQ 1pyaB 292 :EWLEKMGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23424 # 1i0dA.189.300 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 189 :KYMKEKGVQ 1i0dA 334 :PFLREKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23425 # 1qouA.189.153 read from T0287.t04.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)Q197 (1qouA)G161 because S (epsilon) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1qouA 153 :KFTQENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23426 # 1l5aA.189.314 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 189 :KYMKEKGVQ 1l5aA 315 :QIEQDQGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23427 # 1mtyG.189.150 read from T0287.t04.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)Q197 (1mtyG)R162 because E (beta_S) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1mtyG 154 :ELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23428 # 1u4bA.189.516 read from T0287.t04.many.frag # found chain 1u4bA in training set T0287 189 :KYMKEKGVQ 1u4bA 813 :ARLKEERLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23429 # 1t0fC.189.34 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 189 :KYMKEKGVQ 1t0fC 536 :ERLKGKGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23430 # 2nacA.189.168 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 189 :KYMKEKGVQ 2nacA 169 :HEWARKGGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23431 # 1f86A.189.67 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 189 :KYMKEKGVQ 1f86A 77 :SYWKALGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23432 # 1jubA.189.290 read from T0287.t04.many.frag # found chain 1jubA in training set Warning: unaligning (T0287)Q197 (1jubA)Q299 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1jubA 291 :EIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23433 # 1zsqA.189.143 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 189 :KYMKEK 1zsqA 213 :LEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23434 # 1jr2A.189.173 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 189 :KYMKEKGVQ 1jr2A 153 :KALKDKGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23435 # 1j54A.189.146 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 189 :KYMKEKGVQ 1j54A 147 :ALCARYEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23436 # 2c71A.189.186 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 189 :KYMKEKGVQ 2c71A 662 :ELFTLKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23437 # 1l1sA.189.73 read from T0287.t04.many.frag # found chain 1l1sA in template set T0287 189 :KYMKEKGVQ 1l1sA 74 :NTLRASGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23438 # 1ko6A.189.160 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 189 :KYMKEKGVQ 1ko6A 837 :AVSRKQGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23439 # 1vbkA.189.248 read from T0287.t04.many.frag # found chain 1vbkA in template set T0287 189 :KYMKEKGVQ 1vbkA 249 :KLIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23440 # 1n69A.189.70 read from T0287.t04.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)K194 (1n69A)V74 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1n69A 69 :EICAL T0287 195 :GVQ 1n69A 75 :GFC Number of specific fragments extracted= 2 number of extra gaps= 1 total=23442 # 1orc.189.17 read from T0287.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1orc)Y26 T0287 189 :KYMKEKG 1orc 18 :KTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23443 # 1ux5A.189.361 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 189 :KYMKEKGVQ 1ux5A 1711 :SLMHTYGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23444 # 1nuuA.189.224 read from T0287.t04.many.frag # found chain 1nuuA in template set T0287 189 :KYMKEKGVQ 1nuuA 225 :TYIKDHGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23445 # 2d1pB.189.80 read from T0287.t04.many.frag # found chain 2d1pB in template set T0287 189 :KYMKEKGVQ 2d1pB 81 :ASLRERGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23446 # 1e5kA.189.158 read from T0287.t04.many.frag # found chain 1e5kA in training set T0287 189 :KYMKEKGVQ 1e5kA 159 :VFMRLAGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23447 # 1l3lA.189.192 read from T0287.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)Q197 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l3lA 193 :EIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23448 # 1c1yB.189.29 read from T0287.t04.many.frag # found chain 1c1yB in template set T0287 189 :KYMKEKGVQ 1c1yB 84 :KALKVRGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23449 # 2cvbA.189.88 read from T0287.t04.many.frag # found chain 2cvbA in template set T0287 189 :KYMKEKGVQ 2cvbA 89 :AFAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23450 # 1j2rA.190.125 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 190 :YMKEKGVQN 1j2rA 126 :QLRRRGIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23451 # 1oz2A.190.230 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 190 :YMKEKGVQN 1oz2A 427 :YLEETGASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23452 # 1jubA.190.291 read from T0287.t04.many.frag # found chain 1jubA in training set T0287 190 :YMKEKGVQN 1jubA 292 :IMNQKGYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23453 # 1ywfA.190.275 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 190 :YMKEKGVQN 1ywfA 256 :YLRDAGISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23454 # 1i0dA.190.301 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 190 :YMKEKGVQN 1i0dA 335 :FLREKGVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23455 # 1mtyG.190.151 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 190 :YMKEKGVQN 1mtyG 155 :LRKQRGVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23456 # 1o2dA.190.318 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 190 :YMKEKGVQN 1o2dA 307 :FLKELGLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23457 # 1pyaB.190.210 read from T0287.t04.many.frag # found chain 1pyaB in template set T0287 190 :YMKEKGVQN 1pyaB 293 :WLEKMGYKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23458 # 1vbkA.190.249 read from T0287.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1vbkA 250 :LIRDFGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23459 # 1t0fC.190.35 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 190 :YMKEKGVQN 1t0fC 537 :RLKGKGVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23460 # 2nacA.190.169 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 190 :YMKEKGVQN 2nacA 170 :EWARKGGWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23461 # 1onrA.190.116 read from T0287.t04.many.frag # found chain 1onrA in template set T0287 190 :YMKEKGVQN 1onrA 118 :LYNDAGISN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23462 # 1l1sA.190.74 read from T0287.t04.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)K194 (1l1sA)S79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKE 1l1sA 75 :TLRA T0287 195 :GV 1l1sA 80 :GM T0287 198 :N 1l1sA 83 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=23465 # 1zsqA.190.144 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 190 :YMKEK 1zsqA 214 :EYRRQ T0287 198 :N 1zsqA 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=23467 # 1qouA.190.154 read from T0287.t04.many.frag # found chain 1qouA in template set T0287 190 :YMKEKGVQN 1qouA 154 :FTQENELGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23468 # 1ko6A.190.161 read from T0287.t04.many.frag # found chain 1ko6A in template set T0287 190 :YMKEKGVQN 1ko6A 838 :VSRKQGAQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23469 # 1l5aA.190.315 read from T0287.t04.many.frag # found chain 1l5aA in template set T0287 190 :YMKEKGVQN 1l5aA 316 :IEQDQGLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23470 # 1u4bA.190.517 read from T0287.t04.many.frag # found chain 1u4bA in training set Warning: unaligning (T0287)K194 (1u4bA)E818 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N198 (1u4bA)A822 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKE 1u4bA 814 :RLKE T0287 195 :GVQ 1u4bA 819 :RLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=23472 # 2c71A.190.187 read from T0287.t04.many.frag # found chain 2c71A in template set T0287 190 :YMKEKGVQN 2c71A 663 :LFTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23473 # 1lxjA.190.65 read from T0287.t04.many.frag # found chain 1lxjA in training set Warning: unaligning (T0287)N198 (1lxjA)R74 because E (beta_S) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1lxjA 66 :YGHEKGYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23474 # 2cvbA.190.89 read from T0287.t04.many.frag # found chain 2cvbA in template set Warning: unaligning (T0287)N198 (2cvbA)F98 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 2cvbA 90 :FAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23475 # 1i12A.190.142 read from T0287.t04.many.frag # found chain 1i12A in training set Warning: unaligning (T0287)Q197 (1i12A)S149 because E (beta_S) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1i12A 142 :FYEKCGF T0287 198 :N 1i12A 150 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=23477 # 1c1yB.190.30 read from T0287.t04.many.frag # found chain 1c1yB in template set T0287 190 :YMKEKGVQN 1c1yB 85 :ALKVRGLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23478 # 1j54A.190.147 read from T0287.t04.many.frag # found chain 1j54A in training set T0287 190 :YMKEKGVQN 1j54A 148 :LCARYEIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23479 # 1n93X.190.364 read from T0287.t04.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1n93X 360 :IMKMIGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=23480 # 1ux5A.190.362 read from T0287.t04.many.frag # found chain 1ux5A in template set T0287 190 :YMKEKGVQN 1ux5A 1712 :LMHTYGEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23481 # 1nuuA.190.225 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1nuuA 226 :YIKDHGL T0287 198 :N 1nuuA 234 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=23483 # 1y42X.190.148 read from T0287.t04.many.frag # found chain 1y42X in template set T0287 190 :YMKEKGVQN 1y42X 180 :QMRARGYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23484 # 2d1pB.190.81 read from T0287.t04.many.frag # found chain 2d1pB in template set T0287 190 :YMKEKGVQN 2d1pB 82 :SLRERGLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23485 # 1f86A.190.68 read from T0287.t04.many.frag # found chain 1f86A in training set T0287 190 :YMKEKGVQN 1f86A 78 :YWKALGISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23486 # 1mtyG.191.152 read from T0287.t04.many.frag # found chain 1mtyG in training set T0287 191 :MKEKGVQNA 1mtyG 156 :RKQRGVRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23487 # 1t0fC.191.36 read from T0287.t04.many.frag # found chain 1t0fC in template set T0287 191 :MKEKGVQNA 1t0fC 538 :LKGKGVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23488 # 1jubA.191.292 read from T0287.t04.many.frag # found chain 1jubA in training set Warning: unaligning (T0287)Q197 (1jubA)Q299 because G (3-10) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1jubA 293 :MNQKGY T0287 198 :NA 1jubA 300 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23490 # 1j2rA.191.126 read from T0287.t04.many.frag # found chain 1j2rA in training set T0287 191 :MKEKGVQNA 1j2rA 127 :LRRRGIDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23491 # 1vbkA.191.250 read from T0287.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1vbkA 251 :IRDFGVK T0287 199 :A 1vbkA 259 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23493 # 1onrA.191.117 read from T0287.t04.many.frag # found chain 1onrA in template set T0287 191 :MKEKGVQNA 1onrA 119 :YNDAGISND Number of specific fragments extracted= 1 number of extra gaps= 0 total=23494 # 1oz2A.191.231 read from T0287.t04.many.frag # found chain 1oz2A in training set T0287 191 :MKEKGVQNA 1oz2A 428 :LEETGASAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23495 # 1i0dA.191.302 read from T0287.t04.many.frag # found chain 1i0dA in training set T0287 191 :MKEKGVQNA 1i0dA 336 :LREKGVPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23496 # 1ko6A.191.162 read from T0287.t04.many.frag # found chain 1ko6A in template set Warning: unaligning (T0287)N198 (1ko6A)F846 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1ko6A 839 :SRKQGAQ T0287 199 :A 1ko6A 847 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=23498 # 1sp3A.191.375 read from T0287.t04.many.frag # found chain 1sp3A in template set T0287 191 :MKEKGVQNA 1sp3A 376 :MLEKGIKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23499 # 1zsqA.191.145 read from T0287.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 191 :MKEK 1zsqA 215 :YRRQ T0287 198 :NA 1zsqA 222 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23501 # 1l1sA.191.75 read from T0287.t04.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)K194 (1l1sA)S79 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKE 1l1sA 76 :LRA T0287 195 :GV 1l1sA 80 :GM T0287 198 :NA 1l1sA 83 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=23504 # 2cvbA.191.90 read from T0287.t04.many.frag # found chain 2cvbA in template set Warning: unaligning (T0287)N198 (2cvbA)F98 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 2cvbA 91 :AEEHGIF T0287 199 :A 2cvbA 99 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=23506 # 2nacA.191.170 read from T0287.t04.many.frag # found chain 2nacA in training set T0287 191 :MKEKGVQNA 2nacA 171 :WARKGGWNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23507 # 1n93X.191.365 read from T0287.t04.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1n93X 361 :MKMIGVT T0287 199 :A 1n93X 369 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23509 # 1c1yB.191.31 read from T0287.t04.many.frag # found chain 1c1yB in template set Warning: unaligning (T0287)Q197 (1c1yB)Q92 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1c1yB 86 :LKVRGL T0287 198 :NA 1c1yB 93 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23511 # 1o2dA.191.319 read from T0287.t04.many.frag # found chain 1o2dA in training set T0287 191 :MKEKGVQNA 1o2dA 308 :LKELGLYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23512 # 1i12A.191.143 read from T0287.t04.many.frag # found chain 1i12A in training set T0287 191 :MKEKGVQNA 1i12A 143 :YEKCGFSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23513 # 1ywfA.191.276 read from T0287.t04.many.frag # found chain 1ywfA in template set T0287 191 :MKEKGVQNA 1ywfA 257 :LRDAGISQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23514 # 1lxjA.191.66 read from T0287.t04.many.frag # found chain 1lxjA in training set T0287 191 :MKEKGVQNA 1lxjA 67 :GHEKGYVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23515 # 1u4bA.191.518 read from T0287.t04.many.frag # found chain 1u4bA in training set T0287 191 :MKEKGVQNA 1u4bA 815 :LKEERLQAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23516 # 1pyaB.191.211 read from T0287.t04.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)N198 (1pyaB)S301 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1pyaB 294 :LEKMGYK T0287 199 :A 1pyaB 302 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23518 # 1jr2A.191.175 read from T0287.t04.many.frag # found chain 1jr2A in template set T0287 191 :MKEKGVQNA 1jr2A 155 :LKDKGIAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=23519 # 1s3rA.191.283 read from T0287.t04.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)Q197 (1s3rA)N287 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1s3rA 281 :LINRGV T0287 198 :NA 1s3rA 288 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23521 # 2c71A.191.188 read from T0287.t04.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)A199 (2c71A)D672 because D (zeta) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 2c71A 664 :FTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23522 # 1y42X.191.149 read from T0287.t04.many.frag # found chain 1y42X in template set Warning: unaligning (T0287)Q197 (1y42X)E187 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1y42X 181 :MRARGY T0287 198 :NA 1y42X 188 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23524 # 1nofA.191.119 read from T0287.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0287)N198 (1nofA)L157 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1nofA 150 :MQTNGAP T0287 199 :A 1nofA 158 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=23526 # 1qddA.191.65 read from T0287.t04.many.frag # found chain 1qddA in training set T0287 191 :MKEKGVQNA 1qddA 66 :IKESGTDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23527 # 2igd.191.38 read from T0287.t04.many.frag # found chain 2igd in training set Warning: unaligning (T0287)N198 (2igd)G46 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 2igd 39 :ANDNGVD T0287 199 :A 2igd 47 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23529 # 1nuuA.191.226 read from T0287.t04.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 191 :MKEKGV 1nuuA 227 :IKDHGL T0287 198 :NA 1nuuA 234 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23531 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0287.t06.many.frag with CODEWEIGHT bystroff filtering # T0287 read from T0287.t06.many.frag # 1e9rA.1.164 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)M1 (1e9rA)G235 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S2 (1e9rA)T236 because D (zeta) conformation "forbidden" or filtered. T0287 3 :NNMRKLF 1e9rA 237 :PSMRELF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23532 # 1wu7A.1.175 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)M1 (1wu7A)T176 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 1wu7A 177 :SSDPFSVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23533 # 1xsvA.1.25 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 1 :MSNNMRKLF 1xsvA 23 :LTNKQRNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23534 # 1zpyA.1.12 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 1 :MSN 1zpyA 13 :LSD T0287 6 :RKLF 1zpyA 18 :RDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23536 # 1efyA.1.3 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 1 :MSNNMRKLF 1efyA 665 :LAKPIQDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23537 # 1u61A.1.37 read from T0287.t06.many.frag # found chain 1u61A in template set T0287 1 :MSNNMRKLF 1u61A 35 :RPNQLHRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23538 # 2b06A.1.120 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 1 :MSN 2b06A 121 :LAY T0287 5 :MRKLF 2b06A 125 :MLPLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=23540 # 2czsA.1.12 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 1 :MSNNMRKLF 2czsA 35 :LDTNHKRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23541 # 1z7xW.1.211 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 1 :MSNNMRKLF 1z7xW 211 :TSDNCRDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23542 # 1v96A.1.17 read from T0287.t06.many.frag # found chain 1v96A in template set T0287 1 :MSNNMRKLF 1v96A 18 :HSQNMKRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23543 # 1p0yA.1.306 read from T0287.t06.many.frag # found chain 1p0yA in template set Warning: unaligning (T0287)S2 (1p0yA)P352 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N3 (1p0yA)P353 because P (beta_P) conformation "forbidden" or filtered. T0287 1 :M 1p0yA 351 :L T0287 4 :NMRKLF 1p0yA 354 :GLLPYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23545 # 1qg8A.1.11 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 1 :MSNNMRKLF 1qg8A 13 :KSDYVAKSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23546 # 1j93A.1.165 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N4 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. T0287 1 :MSN 1j93A 165 :SSK T0287 5 :MRKLF 1j93A 169 :FTKIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23548 # 2f22A.1.32 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 1 :MSNNMRKLF 2f22A 32 :ELGTLRKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23549 # 1yvrA.1.143 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 1 :MSNNMRKLF 1yvrA 144 :WGRALRKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23550 # 1ah7.1.190 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 1 :MSNNMRKLF 1ah7 191 :VNDNTKDWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23551 # 1x91A.1.29 read from T0287.t06.many.frag # found chain 1x91A in training set T0287 1 :MSNNMRKLF 1x91A 26 :ASANLQALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23552 # 2b0tA.1.59 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 1 :MSNNMRKLF 2b0tA 60 :VGNALAELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23553 # 1pu6A.1.60 read from T0287.t06.many.frag # found chain 1pu6A in training set T0287 1 :MSNNMRKLF 1pu6A 61 :LENDDEINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23554 # 1ua4A.1.237 read from T0287.t06.many.frag # found chain 1ua4A in template set T0287 1 :MSNNMRKLF 1ua4A 238 :TKENYKEPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23555 # 1yd0A.1.0 read from T0287.t06.many.frag # found chain 1yd0A in training set T0287 1 :MSNNMRKLF 1yd0A 1 :MKEKIRKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23556 # 1qhlA.1.166 read from T0287.t06.many.frag # found chain 1qhlA in template set T0287 1 :MSNNMRKLF 1qhlA 167 :QFNSITDYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23557 # 1jfzA.1.0 read from T0287.t06.many.frag # found chain 1jfzA in template set T0287 1 :MSNNMRKLF 1jfzA 0 :GMKMLEQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23558 # 1ldjA.1.298 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 T0287 1 :MSNNMRKL 1ldjA 315 :KNEDLGRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23559 # 2bg5A.1.276 read from T0287.t06.many.frag # found chain 2bg5A in template set Warning: unaligning (T0287)M1 (2bg5A)S526 because P (beta_P) conformation "forbidden" or filtered. T0287 2 :SNNMRKLF 2bg5A 527 :ATSIPEIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23560 # 1utcA.1.329 read from T0287.t06.many.frag # found chain 1utcA in template set T0287 1 :MSNNMRKLF 1utcA 330 :EEENIIPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23561 # 1qgiA.1.181 read from T0287.t06.many.frag # found chain 1qgiA in training set T0287 1 :MSNNMRKLF 1qgiA 182 :GSDTLQGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23562 # 1fm0D.1.23 read from T0287.t06.many.frag # found chain 1fm0D in training set Warning: unaligning (T0287)N4 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0287 1 :MSN 1fm0D 24 :DFP T0287 5 :MRKLF 1fm0D 28 :VEALR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23564 # 2b6cA.1.120 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)M1 because of BadResidue code BAD_PEPTIDE in next template residue (2b6cA)L119 Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLF 2b6cA 120 :TELPTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23565 # 1m5wA.1.111 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 1 :MSNNMRKLF 1m5wA 112 :QRDKMRDAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23566 # 1wu7A.2.176 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 2 :SNNMRKLFS 1wu7A 177 :SSDPFSVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23567 # 1xsvA.2.26 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 2 :SNNMRKLFS 1xsvA 24 :TNKQRNYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23568 # 1efyA.2.4 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 2 :SNNMRKLFS 1efyA 666 :AKPIQDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23569 # 1e9rA.2.165 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 2 :SNNMRKLFS 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23570 # 2czsA.2.13 read from T0287.t06.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S2 (2czsA)D36 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 2czsA 37 :TNHKRFYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23571 # 1zpyA.2.13 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 2 :SN 1zpyA 14 :SD T0287 6 :RKLFS 1zpyA 18 :RDMHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23573 # 1ah7.2.191 read from T0287.t06.many.frag # found chain 1ah7 in training set Warning: unaligning (T0287)S2 (1ah7)N192 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1ah7 193 :DNTKDWFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23574 # 2f22A.2.33 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 2 :SNNMRKLFS 2f22A 33 :LGTLRKLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23575 # 1qg8A.2.12 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 2 :SNNMRKLFS 1qg8A 14 :SDYVAKSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23576 # 2b06A.2.121 read from T0287.t06.many.frag # found chain 2b06A in template set T0287 2 :SNNMRKLFS 2b06A 122 :AYDMLPLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=23577 # 1j93A.2.166 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 2 :SNN 1j93A 166 :SKN T0287 6 :RKLFS 1j93A 170 :TKIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23579 # 1z7xW.2.212 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 2 :SNNMRKLFS 1z7xW 212 :SDNCRDLCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23580 # 1ldjA.2.299 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S2 (1ldjA)N316 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 3 :NNMRKL 1ldjA 317 :EDLGRM Number of specific fragments extracted= 1 number of extra gaps= 2 total=23581 # 1yvrA.2.144 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 2 :SNNMRKLFS 1yvrA 145 :GRALRKAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23582 # 1ua4A.2.238 read from T0287.t06.many.frag # found chain 1ua4A in template set T0287 2 :SNNMRKLFS 1ua4A 239 :KENYKEPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23583 # 1m5wA.2.112 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 2 :SNNMRKLFS 1m5wA 113 :RDKMRDACK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23584 # 1wb9A.2.429 read from T0287.t06.many.frag # found chain 1wb9A in template set T0287 2 :SNNMRKLFS 1wb9A 430 :NEELDEWRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23585 # 1u61A.2.38 read from T0287.t06.many.frag # found chain 1u61A in template set T0287 2 :SNNMRKLFS 1u61A 36 :PNQLHRLGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23586 # 1dozA.2.17 read from T0287.t06.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)N4 (1dozA)D21 because G (3-10) conformation "forbidden" or filtered. T0287 2 :SN 1dozA 19 :EE T0287 5 :MRKLFS 1dozA 22 :IERYYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23588 # 2b6cA.2.121 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S2 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 3 :NNMRKLFS 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23589 # 1v96A.2.18 read from T0287.t06.many.frag # found chain 1v96A in template set T0287 2 :SNNMRKLFS 1v96A 19 :SQNMKRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23590 # 1yd0A.2.1 read from T0287.t06.many.frag # found chain 1yd0A in training set T0287 2 :SNNMRKLFS 1yd0A 2 :KEKIRKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23591 # 1xfiA.2.38 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 2 :SNNMRKLFS 1xfiA 39 :TPNEISWIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23592 # 1pu6A.2.61 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)S2 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :NNMRKLFS 1pu6A 63 :NDDEINLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23593 # 3thiA.2.120 read from T0287.t06.many.frag # found chain 3thiA in template set T0287 2 :SNNMRKLFS 3thiA 129 :VDNIYELYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23594 # 1p0yA.2.307 read from T0287.t06.many.frag # found chain 1p0yA in template set Warning: unaligning (T0287)N4 (1p0yA)G354 because T (delta_L) conformation "forbidden" or filtered. T0287 2 :SN 1p0yA 352 :PP T0287 5 :MRKLFS 1p0yA 355 :LLPYLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23596 # 1z0wA.2.174 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 2 :SN 1z0wA 589 :VS T0287 5 :MRKLFS 1z0wA 592 :INEVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23598 # 2ahrA.2.154 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 2 :SNNMRKLFS 2ahrA 152 :EKDFDTFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23599 # 1hw1A.2.120 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 2 :SNNMRKLFS 1hw1A 121 :PDKAQEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23600 # 2b0tA.2.60 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 2 :SNNMRKLFS 2b0tA 61 :GNALAELGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23601 # 1wu7A.3.177 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 3 :NNMRKLFSM 1wu7A 178 :SDPFSVFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23602 # 1efyA.3.5 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 3 :NNMRKLFSM 1efyA 667 :KPIQDLIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23603 # 1xsvA.3.27 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 3 :NNMRKLFSM 1xsvA 25 :NKQRNYLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23604 # 1zpyA.3.14 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 3 :N 1zpyA 15 :D T0287 6 :RKLFSM 1zpyA 18 :RDMHRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23606 # 1ah7.3.192 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 3 :NNMRKLFSM 1ah7 193 :DNTKDWFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23607 # 2czsA.3.14 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 3 :NNMRKLFSM 2czsA 37 :TNHKRFYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23608 # 1e9rA.3.166 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 3 :NNMRKLFSM 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23609 # 2f22A.3.34 read from T0287.t06.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)N4 (2f22A)T35 because P (beta_P) conformation "forbidden" or filtered. T0287 3 :N 2f22A 34 :G T0287 5 :MRKLFSM 2f22A 36 :LRKLFIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23611 # 2b6cA.3.122 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 3 :NNMRKLFSM 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23612 # 1m5wA.3.113 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 3 :NNMRKLFSM 1m5wA 114 :DKMRDACKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23613 # 1ldjA.3.300 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 3 :NNMRKL 1ldjA 317 :EDLGRM T0287 11 :M 1ldjA 325 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23615 # 1dozA.3.18 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 3 :NNMRKLFSM 1dozA 20 :EDIERYYTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23616 # 2b06A.3.122 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 3 :N 2b06A 123 :Y T0287 5 :MRKLFSM 2b06A 125 :MLPLMEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=23618 # 1wb9A.3.430 read from T0287.t06.many.frag # found chain 1wb9A in template set T0287 3 :NNMRKLFSM 1wb9A 431 :EELDEWRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23619 # 1z7xW.3.213 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 3 :NNMRKLFSM 1z7xW 213 :DNCRDLCGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23620 # 1j93A.3.167 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N3 (1j93A)K167 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 4 :N 1j93A 168 :N T0287 6 :RKLFSM 1j93A 170 :TKIKRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23622 # 1qg8A.3.13 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 3 :NNMRKLFSM 1qg8A 15 :DYVAKSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23623 # 3thiA.3.121 read from T0287.t06.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)N4 (3thiA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 3thiA 130 :D T0287 5 :MRKLFSM 3thiA 132 :IYELYKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23625 # 1ee4A.3.296 read from T0287.t06.many.frag # found chain 1ee4A in template set T0287 3 :NNMRKLFSM 1ee4A 383 :NLIPPLVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23626 # 1yvrA.3.145 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 3 :NNMRKLFSM 1yvrA 146 :RALRKAVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23627 # 1ua4A.3.239 read from T0287.t06.many.frag # found chain 1ua4A in template set T0287 3 :NNMRKLFSM 1ua4A 240 :ENYKEPFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23628 # 1xfiA.3.39 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 3 :NNMRKLFSM 1xfiA 40 :PNEISWINV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23629 # 1b25A.3.502 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 3 :NNMRKLFSM 1b25A 503 :DYYPKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23630 # 1u61A.3.39 read from T0287.t06.many.frag # found chain 1u61A in template set T0287 3 :NNMRKLFSM 1u61A 37 :NQLHRLGTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23631 # 1z0wA.3.175 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 3 :N 1z0wA 590 :S T0287 5 :MRKLFSM 1z0wA 592 :INEVLEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23633 # 1hw1A.3.121 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 3 :NNMRKLFSM 1hw1A 122 :DKAQEVLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23634 # 2ahrA.3.155 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N4 (2ahrA)D154 because G (3-10) conformation "forbidden" or filtered. T0287 3 :N 2ahrA 153 :K T0287 5 :MRKLFSM 2ahrA 155 :FDTFTAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23636 # 2b0tA.3.61 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 3 :NNMRKLFSM 2b0tA 62 :NALAELGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23637 # 1yqyA.3.29 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 3 :NNMRKLFSM 1yqyA 287 :EEGRGLLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23638 # 1yavA.3.102 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 3 :NNMRKLFSM 1yavA 103 :DPIMKGFGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23639 # 1wu7A.4.178 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 4 :NMRKLFSMI 1wu7A 179 :DPFSVFSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23640 # 1ah7.4.193 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 4 :NMRKLFSMI 1ah7 194 :NTKDWFVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23641 # 1efyA.4.6 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 4 :NMRKLFSMI 1efyA 668 :PIQDLIKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23642 # 1xsvA.4.28 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 4 :NMRKLFSMI 1xsvA 26 :KQRNYLELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23643 # 1zpyA.4.15 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)N4 because of BadResidue code BAD_PEPTIDE in next template residue (1zpyA)T17 Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMI 1zpyA 18 :RDMHRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23644 # 2czsA.4.15 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 4 :NMRKLFSMI 2czsA 38 :NHKRFYDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23645 # 1m5wA.4.114 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 4 :NMRKLFSMI 1m5wA 115 :KMRDACKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23646 # 1e9rA.4.167 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 4 :NMRKLFSMI 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23647 # 1ldjA.4.301 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 4 :NMRKL 1ldjA 318 :DLGRM T0287 11 :MI 1ldjA 325 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23649 # 2b6cA.4.123 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 4 :NMRKLFSMI 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23650 # 1dozA.4.19 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 4 :NMRKLFSMI 1dozA 21 :DIERYYTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23651 # 2f22A.4.35 read from T0287.t06.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)N4 (2f22A)T35 because P (beta_P) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 2f22A 36 :LRKLFIHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23652 # 2b06A.4.123 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)N4 (2b06A)D124 because T (delta_L) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 2b06A 125 :MLPLMEMM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23653 # 1yvrA.4.146 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 4 :NMRKLFSMI 1yvrA 147 :ALRKAVSDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23654 # 1xfiA.4.40 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 4 :NMRKLFSMI 1xfiA 41 :NEISWINVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23655 # 1wb9A.4.431 read from T0287.t06.many.frag # found chain 1wb9A in template set T0287 4 :NMRKLFSMI 1wb9A 432 :ELDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23656 # 1qg8A.4.14 read from T0287.t06.many.frag # found chain 1qg8A in training set T0287 4 :NMRKLFSMI 1qg8A 16 :YVAKSISSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23657 # 1z0wA.4.176 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)N4 (1z0wA)R591 because Y (epsilon') conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1z0wA 592 :INEVLEHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23658 # 3thiA.4.122 read from T0287.t06.many.frag # found chain 3thiA in template set T0287 4 :NMRKLFSMI 3thiA 131 :NIYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23659 # 1yavA.4.103 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 4 :NMRKLFSMI 1yavA 104 :PIMKGFGMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23660 # 1hw1A.4.122 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 4 :NMRKLFSMI 1hw1A 123 :KAQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23661 # 1yqyA.4.30 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 4 :NMRKLFSMI 1yqyA 288 :EGRGLLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23662 # 1ua4A.4.240 read from T0287.t06.many.frag # found chain 1ua4A in template set Warning: unaligning (T0287)N4 (1ua4A)N241 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1ua4A 242 :YKEPFEIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23663 # 1v74B.4.4 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 4 :NMRKLFSMI 1v74B 5 :AMIDLAKLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23664 # 1sd4A.4.10 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 4 :NMRKLFSMI 1sd4A 11 :AEWDVMNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23665 # 1u7nA.4.191 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 4 :NMRKLFSMI 1u7nA 189 :LTKKAFELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23666 # 1z7xW.4.214 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 4 :NMRKLFSMI 1z7xW 214 :NCRDLCGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23667 # 1n1bA.4.207 read from T0287.t06.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)N4 (1n1bA)E257 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1n1bA 258 :ARWFIDAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23668 # 1b25A.4.503 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 4 :NMRKLFSMI 1b25A 504 :YYPKLLKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23669 # 1j93A.4.168 read from T0287.t06.many.frag # found chain 1j93A in template set Warning: unaligning (T0287)N4 (1j93A)N168 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M5 (1j93A)F169 because L (left) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 1j93A 170 :TKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23670 # 1wu7A.5.179 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 5 :MRKLFSMIA 1wu7A 180 :PFSVFSIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23671 # 1ah7.5.194 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 5 :MRKLFSMIA 1ah7 195 :TKDWFVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23672 # 1efyA.5.7 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 5 :MRKLFSMIA 1efyA 669 :IQDLIKMIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23673 # 1xsvA.5.29 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 5 :MRKLFSMIA 1xsvA 27 :QRNYLELFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23674 # 2czsA.5.16 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 5 :MRKLFSMIA 2czsA 39 :HKRFYDAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23675 # 1zpyA.5.16 read from T0287.t06.many.frag # found chain 1zpyA in template set Warning: unaligning (T0287)M5 because of BadResidue code BAD_PEPTIDE at template residue (1zpyA)T17 T0287 6 :RKLFSMIA 1zpyA 18 :RDMHRAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=23676 # 1ldjA.5.302 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 5 :MRKL 1ldjA 319 :LGRM T0287 11 :MIA 1ldjA 325 :LVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23678 # 1dozA.5.20 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 5 :MRKLFSMIA 1dozA 22 :IERYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23679 # 2b6cA.5.124 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 5 :MRKLFSMIA 2b6cA 122 :LPTIFALFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23680 # 1m5wA.5.115 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 5 :MRKLFSMIA 1m5wA 116 :MRDACKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23681 # 2b06A.5.124 read from T0287.t06.many.frag # found chain 2b06A in template set T0287 5 :MRKLFSMIA 2b06A 125 :MLPLMEMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=23682 # 1wb9A.5.432 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)A13 (1wb9A)D441 because G (3-10) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1wb9A 433 :LDEWRALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23683 # 3htsB.5.15 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 5 :MRKLFSMIA 3htsB 198 :VNKLWSMVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23684 # 1e9rA.5.168 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 5 :MRKLFSMIA 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23685 # 1u7nA.5.192 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 5 :MRKLFSMIA 1u7nA 190 :TKKAFELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23686 # 1xfiA.5.41 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 5 :MRKLFSMIA 1xfiA 42 :EISWINVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23687 # 1n1bA.5.208 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 5 :MRKLFSMIA 1n1bA 258 :ARWFIDAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23688 # 1yavA.5.104 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 5 :MRKLFSMIA 1yavA 105 :IMKGFGMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23689 # 3thiA.5.123 read from T0287.t06.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 3thiA 132 :IYELYKKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23690 # 1v74B.5.5 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 5 :MRKLFSMIA 1v74B 6 :MIDLAKLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23691 # 1hw1A.5.123 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)A13 (1hw1A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 5 :MRKLFSMI 1hw1A 124 :AQEVLATA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23692 # 1q08A.5.21 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 5 :MRKLFSMIA 1q08A 64 :IRELLSIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23693 # 1b25A.5.504 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 5 :MRKLFSMIA 1b25A 505 :YPKLLKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23694 # 2f22A.5.36 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 5 :MRKLFSMIA 2f22A 36 :LRKLFIHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23695 # 1n5uA.5.160 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 5 :MRKLFSMIA 1n5uA 161 :YKAAFTECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23696 # 1sd4A.5.11 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 5 :MRKLFSMIA 1sd4A 12 :EWDVMNIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23697 # 1z0wA.5.177 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 5 :MRKLFSMIA 1z0wA 592 :INEVLEHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23698 # 1yvrA.5.147 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 5 :MRKLFSMIA 1yvrA 148 :LRKAVSDWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23699 # 1z7xW.5.215 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 5 :MRKLFSMIA 1z7xW 215 :CRDLCGIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23700 # 2czlA.5.125 read from T0287.t06.many.frag # found chain 2czlA in template set T0287 5 :MRKLFSMIA 2czlA 126 :YDRILPMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23701 # 1wu7A.6.180 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 6 :RKLFSMIAD 1wu7A 181 :FSVFSIIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23702 # 1ah7.6.195 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 6 :RKLFSMIAD 1ah7 196 :KDWFVKAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23703 # 1efyA.6.8 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 6 :RKLFSMIAD 1efyA 670 :QDLIKMIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23704 # 1xsvA.6.30 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 6 :RKLFSMIAD 1xsvA 28 :RNYLELFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23705 # 2czsA.6.17 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 6 :RKLFSMIAD 2czsA 40 :KRFYDAFAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23706 # 1dozA.6.21 read from T0287.t06.many.frag # found chain 1dozA in training set T0287 6 :RKLFSMIAD 1dozA 23 :ERYYTHIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23707 # 1ldjA.6.303 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 6 :RKL 1ldjA 320 :GRM T0287 11 :MIAD 1ldjA 325 :LVSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23709 # 1zpyA.6.17 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 6 :RKLFSMIAD 1zpyA 18 :RDMHRAIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23710 # 2b6cA.6.125 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 6 :RKLFSMIAD 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23711 # 1m5wA.6.116 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 6 :RKLFSMIAD 1m5wA 117 :RDACKRLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23712 # 1n5uA.6.161 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 6 :RKLFSMIAD 1n5uA 162 :KAAFTECCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23713 # 1v74B.6.6 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 6 :RKLFSMIAD 1v74B 7 :IDLAKLFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23714 # 1yavA.6.105 read from T0287.t06.many.frag # found chain 1yavA in template set T0287 6 :RKLFSMIAD 1yavA 106 :MKGFGMVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23715 # 1u7nA.6.193 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 6 :RKLFSMIAD 1u7nA 191 :KKAFELLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23716 # 1n1bA.6.209 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 6 :RKLFSMIAD 1n1bA 259 :RWFIDAYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23717 # 3htsB.6.16 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 6 :RKLFSMIAD 3htsB 199 :NKLWSMVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=23718 # 2b06A.6.125 read from T0287.t06.many.frag # found chain 2b06A in template set T0287 6 :RKLFSMIAD 2b06A 126 :LPLMEMMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23719 # 1wb9A.6.433 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 T0287 6 :RKLFSMIA 1wb9A 434 :DEWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23720 # 1hw1A.6.124 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)A13 (1hw1A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 1hw1A 125 :QEVLATA T0287 14 :D 1hw1A 133 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=23722 # 1xfiA.6.42 read from T0287.t06.many.frag # found chain 1xfiA in training set T0287 6 :RKLFSMIAD 1xfiA 43 :ISWINVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23723 # 1skvA.6.7 read from T0287.t06.many.frag # found chain 1skvA in template set T0287 6 :RKLFSMIAD 1skvA 8 :KELFEMLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23724 # 1z0wA.6.178 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 6 :RKLFSMIAD 1z0wA 593 :NEVLEHVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23725 # 1q08A.6.22 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 6 :RKLFSMIAD 1q08A 65 :RELLSIRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23726 # 1sd4A.6.12 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 6 :RKLFSMIAD 1sd4A 13 :WDVMNIIWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23727 # 1b43A.6.247 read from T0287.t06.many.frag # found chain 1b43A in template set T0287 6 :RKLFSMIAD 1b43A 247 :KKALEIVRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23728 # 3thiA.6.124 read from T0287.t06.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 6 :RKLFSMI 3thiA 133 :YELYKKI T0287 14 :D 3thiA 141 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=23730 # 1b25A.6.505 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 6 :RKLFSMIAD 1b25A 506 :PKLLKAITG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23731 # 1yvrA.6.148 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 6 :RKLFSMIAD 1yvrA 149 :RKAVSDWYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23732 # 1f7lA.6.12 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 6 :RKLFSMIAD 1f7lA 13 :KRIASMAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23733 # 1elkA.6.37 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 6 :RKLFSMIAD 1elkA 34 :MEICDIINE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23734 # 1ah7.7.196 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 7 :KLFSMIADS 1ah7 197 :DWFVKAAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23735 # 1wu7A.7.181 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 7 :KLFSMIADS 1wu7A 182 :SVFSIIDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23736 # 1efyA.7.9 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 7 :KLFSMIADS 1efyA 671 :DLIKMIFDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23737 # 2czsA.7.18 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 7 :KLFSMIADS 2czsA 41 :RFYDAFAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23738 # 1dozA.7.22 read from T0287.t06.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1dozA 24 :RYYTHIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23739 # 1u7nA.7.194 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 7 :KLFSMIADS 1u7nA 192 :KAFELLAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23740 # 1elkA.7.38 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 7 :KLFSMIADS 1elkA 35 :EICDIINET Number of specific fragments extracted= 1 number of extra gaps= 0 total=23741 # 1hw1A.7.125 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 1hw1A 126 :EVLATAN T0287 15 :S 1hw1A 134 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23743 # 1n5uA.7.162 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 7 :KLFSMIADS 1n5uA 163 :AAFTECCQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23744 # 1ldjA.7.304 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 7 :KL 1ldjA 321 :RM T0287 11 :MIADS 1ldjA 325 :LVSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23746 # 1xsvA.7.31 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 7 :KLFSMIADS 1xsvA 29 :NYLELFYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23747 # 2b06A.7.126 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)D14 (2b06A)A134 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMIA 2b06A 127 :PLMEMME T0287 15 :S 2b06A 135 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=23749 # 1z0wA.7.179 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSM 1z0wA 594 :EVLEH T0287 13 :A 1z0wA 600 :L T0287 15 :S 1z0wA 602 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=23752 # 1q08A.7.23 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 7 :KLFSMIADS 1q08A 66 :ELLSIRIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23753 # 1b43A.7.248 read from T0287.t06.many.frag # found chain 1b43A in template set T0287 7 :KLFSMIADS 1b43A 248 :KALEIVRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23754 # 3htsB.7.17 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 7 :KLFSMIADS 3htsB 200 :KLWSMVNDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23755 # 1v74B.7.7 read from T0287.t06.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)S15 (1v74B)S16 because L (left) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 1v74B 8 :DLAKLFLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23756 # 1n1bA.7.210 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 7 :KLFSMIADS 1n1bA 260 :WFIDAYARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23757 # 1qv9A.7.81 read from T0287.t06.many.frag # found chain 1qv9A in training set T0287 7 :KLFSMIADS 1qv9A 82 :KAREMLADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23758 # 1f7lA.7.13 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 7 :KLFSMIADS 1f7lA 14 :RIASMAGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23759 # 1m5wA.7.117 read from T0287.t06.many.frag # found chain 1m5wA in template set T0287 7 :KLFSMIADS 1m5wA 118 :DACKRLADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23760 # 1sd4A.7.13 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 7 :KLFSMIADS 1sd4A 14 :DVMNIIWDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23761 # 3thiA.7.125 read from T0287.t06.many.frag # found chain 3thiA in template set Warning: unaligning (T0287)A13 (3thiA)G140 because S (epsilon) conformation "forbidden" or filtered. T0287 7 :KLFSMI 3thiA 134 :ELYKKI T0287 14 :DS 3thiA 141 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23763 # 1zpyA.7.18 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 7 :KLFSMIADS 1zpyA 19 :DMHRAIISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23764 # 1skvA.7.8 read from T0287.t06.many.frag # found chain 1skvA in template set T0287 7 :KLFSMIADS 1skvA 9 :ELFEMLDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=23765 # 2b6cA.7.126 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)S15 (2b6cA)A132 because P (beta_P) conformation "forbidden" or filtered. T0287 7 :KLFSMIAD 2b6cA 124 :TIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23766 # 1zv1A.7.14 read from T0287.t06.many.frag # found chain 1zv1A in template set T0287 7 :KLFSMIADS 1zv1A 15 :KLLEKFRYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23767 # 1g8mA.7.153 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 7 :KLFSMIADS 1g8mA 154 :SVAKEMAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23768 # 1wb9A.7.434 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 7 :KLFSMIA 1wb9A 435 :EWRALAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23769 # 1h6kA.7.496 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 7 :KLFSMIADS 1h6kA 516 :EIFSILKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23770 # 1ah7.8.197 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 8 :LFSMIADSK 1ah7 198 :WFVKAAVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23771 # 1wu7A.8.182 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 8 :LFSMIADSK 1wu7A 183 :VFSIIDRYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23772 # 1elkA.8.39 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 8 :LFSMIADSK 1elkA 36 :ICDIINETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23773 # 1z0wA.8.180 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)S15 (1z0wA)D602 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1z0wA 595 :VLEHVLE T0287 16 :K 1z0wA 603 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23775 # 1n5uA.8.163 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 8 :LFSMIADSK 1n5uA 164 :AFTECCQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23776 # 1u7nA.8.195 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 8 :LFSMIADSK 1u7nA 193 :AFELLAADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23777 # 1dozA.8.23 read from T0287.t06.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)S15 (1dozA)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1dozA 25 :YYTHIRR T0287 16 :K 1dozA 33 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=23779 # 1f7lA.8.14 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 8 :LFSMIADSK 1f7lA 15 :IASMAGRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23780 # 1xsvA.8.32 read from T0287.t06.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)S15 (1xsvA)E37 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1xsvA 30 :YLELFYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23781 # 1efyA.8.10 read from T0287.t06.many.frag # found chain 1efyA in template set T0287 8 :LFSMIADSK 1efyA 672 :LIKMIFDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23782 # 1b43A.8.249 read from T0287.t06.many.frag # found chain 1b43A in template set T0287 8 :LFSMIADSK 1b43A 249 :ALEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23783 # 1q08A.8.24 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 8 :LFSMIADSK 1q08A 67 :LLSIRIDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23784 # 2b06A.8.127 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)D14 (2b06A)A134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (2b06A)D136 because G (3-10) conformation "forbidden" or filtered. T0287 8 :LFSMIA 2b06A 128 :LMEMME T0287 15 :S 2b06A 135 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=23786 # 2czsA.8.19 read from T0287.t06.many.frag # found chain 2czsA in template set T0287 8 :LFSMIADSK 2czsA 42 :FYDAFAQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23787 # 1ldjA.8.305 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 8 :L 1ldjA 322 :M T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23789 # 3htsB.8.18 read from T0287.t06.many.frag # found chain 3htsB in training set T0287 8 :LFSMIADSK 3htsB 201 :LWSMVNDKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23790 # 1t0qB.8.270 read from T0287.t06.many.frag # found chain 1t0qB in template set T0287 8 :LFSMIADSK 1t0qB 271 :LVKMALEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23791 # 1qv9A.8.82 read from T0287.t06.many.frag # found chain 1qv9A in training set T0287 8 :LFSMIADSK 1qv9A 83 :AREMLADSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23792 # 1zc6A.8.169 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 8 :LFSMIADSK 1zc6A 170 :LTQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23793 # 1sd4A.8.14 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 8 :LFSMIADSK 1sd4A 15 :VMNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23794 # 1v74B.8.8 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 8 :LFSMIADSK 1v74B 9 :LAKLFLASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23795 # 1g8mA.8.154 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 8 :LFSMIADSK 1g8mA 155 :VAKEMAASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23796 # 1hw1A.8.126 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 8 :LFSMIADSK 1hw1A 127 :VLATANEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23797 # 1tn6A.8.174 read from T0287.t06.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. T0287 8 :LFSMI 1tn6A 175 :LVEWL T0287 14 :DSK 1tn6A 181 :DPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23799 # 1otvA.8.192 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 8 :LFSMIADSK 1otvA 193 :LAKAYCDSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23800 # 1ak0.8.92 read from T0287.t06.many.frag # found chain 1ak0 in training set T0287 8 :LFSMIADSK 1ak0 93 :YTQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23801 # 1hf8A.8.44 read from T0287.t06.many.frag # found chain 1hf8A in template set T0287 8 :LFSMIADSK 1hf8A 45 :LIQCTNEMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23802 # 1zv1A.8.15 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMI 1zv1A 16 :LLEKF T0287 15 :SK 1zv1A 23 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=23804 # 1n1bA.8.211 read from T0287.t06.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)S15 (1n1bA)R268 because P (beta_P) conformation "forbidden" or filtered. T0287 8 :LFSMIAD 1n1bA 261 :FIDAYAR T0287 16 :K 1n1bA 269 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=23806 # 1ej0A.8.79 read from T0287.t06.many.frag # found chain 1ej0A in training set Warning: unaligning (T0287)A13 (1ej0A)G114 because S (epsilon) conformation "forbidden" or filtered. T0287 8 :LFSMI 1ej0A 109 :LLERV T0287 14 :DSK 1ej0A 115 :DSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23808 # 1ah7.9.198 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 9 :FSMIADSKD 1ah7 199 :FVKAAVSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23809 # 1elkA.9.40 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 9 :FSMIADSKD 1elkA 37 :CDIINETEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23810 # 1n5uA.9.164 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)S15 (1n5uA)A171 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIAD 1n5uA 165 :FTECCQ T0287 16 :KD 1n5uA 172 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23812 # 1z0wA.9.181 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 9 :FSMIADSKD 1z0wA 596 :LEHVLEDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23813 # 1u7nA.9.196 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 9 :FSMIADSKD 1u7nA 194 :FELLAADET Number of specific fragments extracted= 1 number of extra gaps= 0 total=23814 # 1otvA.9.193 read from T0287.t06.many.frag # found chain 1otvA in template set Warning: unaligning (T0287)A13 (1otvA)C198 because N (gamma') conformation "forbidden" or filtered. T0287 9 :FSMI 1otvA 194 :AKAY T0287 14 :DSKD 1otvA 199 :DSAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23816 # 1b43A.9.250 read from T0287.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 T0287 9 :FSMIADSK 1b43A 250 :LEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23817 # 1f7lA.9.15 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 9 :FSMIADSKD 1f7lA 16 :ASMAGRQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23818 # 1g8mA.9.155 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 9 :FSMIADSKD 1g8mA 156 :AKEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23819 # 1t0qB.9.271 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1t0qB 272 :VKMALEKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=23820 # 1q08A.9.25 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 9 :FSMIADSKD 1q08A 68 :LSIRIDPEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23821 # 1wu7A.9.183 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 9 :FSMIADSKD 1wu7A 184 :FSIIDRYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23822 # 1ldjA.9.306 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)F9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ldjA)N324 Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 Warning: unaligning (T0287)D17 (1ldjA)D331 because L (left) conformation "forbidden" or filtered. T0287 11 :MIADSK 1ldjA 325 :LVSRIQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=23823 # 2czsA.9.20 read from T0287.t06.many.frag # found chain 2czsA in template set Warning: unaligning (T0287)S15 (2czsA)G49 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIAD 2czsA 43 :YDAFAQ T0287 16 :KD 2czsA 50 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23825 # 1zc6A.9.170 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1zc6A 171 :TQMALDGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23826 # 1hw1A.9.127 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 9 :FSMIADSKD 1hw1A 128 :LATANEVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23827 # 1qkrA.9.55 read from T0287.t06.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)A13 (1qkrA)R938 because G (3-10) conformation "forbidden" or filtered. T0287 9 :FSMI 1qkrA 934 :SRLV T0287 14 :DSKD 1qkrA 939 :GGSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23829 # 1n1bA.9.212 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 9 :FSMIADSKD 1n1bA 262 :IDAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23830 # 1tn6A.9.175 read from T0287.t06.many.frag # found chain 1tn6A in training set T0287 9 :FSMIADSKD 1tn6A 176 :VEWLRDPSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23831 # 1dozA.9.24 read from T0287.t06.many.frag # found chain 1dozA in training set Warning: unaligning (T0287)D14 (1dozA)R31 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIA 1dozA 26 :YTHIR T0287 15 :SKD 1dozA 32 :GRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23833 # 1v58A.9.145 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 9 :FSMIADSKD 1v58A 146 :AAAILASKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23834 # 1sd4A.9.15 read from T0287.t06.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)D17 (1sd4A)S24 because Y (epsilon') conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1sd4A 16 :MNIIWDKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23835 # 1xsvA.9.33 read from T0287.t06.many.frag # found chain 1xsvA in training set Warning: unaligning (T0287)S15 (1xsvA)E37 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1xsvA)D38 because L (left) conformation "forbidden" or filtered. T0287 9 :FSMIAD 1xsvA 31 :LELFYL T0287 17 :D 1xsvA 39 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=23837 # 1qv9A.9.83 read from T0287.t06.many.frag # found chain 1qv9A in training set T0287 9 :FSMIADSKD 1qv9A 84 :REMLADSEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23838 # 2b06A.9.128 read from T0287.t06.many.frag # found chain 2b06A in template set Warning: unaligning (T0287)D14 (2b06A)A134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (2b06A)K137 because E (beta_S) conformation "forbidden" or filtered. T0287 9 :FSMIA 2b06A 129 :MEMME T0287 15 :SK 2b06A 135 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=23840 # 1zv1A.9.16 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)I12 (1zv1A)F20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 9 :FSM 1zv1A 17 :LEK T0287 14 :DSKD 1zv1A 22 :YPWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23842 # 1ak0.9.93 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)D17 (1ak0)L102 because P (beta_P) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1ak0 94 :TQRVSDSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23843 # 1xttA.9.14 read from T0287.t06.many.frag # found chain 1xttA in training set T0287 9 :FSMIADSKD 1xttA 15 :LTQLRDKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23844 # 1tu9A.9.12 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 9 :FSMIADSK 1tu9A 11 :YGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 1 total=23845 # 1ci4A.9.45 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 9 :FSMIADSKD 1ci4A 46 :LGQFLVLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23846 # 1n5uA.10.165 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 10 :SMIADSKDK 1n5uA 166 :TECCQAADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23847 # 1ah7.10.199 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 10 :SMIADSKDK 1ah7 200 :VKAAVSQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23848 # 1otvA.10.194 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 10 :SMIADSKDK 1otvA 195 :KAYCDSAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23849 # 1z0wA.10.182 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SM 1z0wA 597 :EH T0287 13 :ADS 1z0wA 600 :LED T0287 17 :DK 1z0wA 604 :KK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23852 # 1elkA.10.41 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 10 :SMIADSKDK 1elkA 38 :DIINETEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23853 # 1v58A.10.146 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 10 :SMIADSKDK 1v58A 147 :AAILASKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23854 # 1n1bA.10.213 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 10 :SMIADSKDK 1n1bA 263 :DAYARRPDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23855 # 1qkrA.10.56 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 10 :SMIADSKDK 1qkrA 935 :RLVRGGSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23856 # 1t0qB.10.272 read from T0287.t06.many.frag # found chain 1t0qB in template set Warning: unaligning (T0287)D17 (1t0qB)G280 because T (delta_L) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1t0qB 273 :KMALEKE T0287 18 :K 1t0qB 281 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=23858 # 1g8mA.10.156 read from T0287.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)K18 (1g8mA)K165 because L (left) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1g8mA 157 :KEMAASKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23859 # 1hw1A.10.128 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADS 1hw1A 129 :ATANEV T0287 17 :DK 1hw1A 136 :DH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23861 # 1f7lA.10.16 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 10 :SMIADSKDK 1f7lA 17 :SMAGRQKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23862 # 1ci4A.10.46 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1ci4A 47 :GQFLVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23863 # 1zc6A.10.171 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 10 :SMIADSKDK 1zc6A 172 :QMALDGRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23864 # 1zv1A.10.17 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)I12 (1zv1A)F20 because G (3-10) conformation "forbidden" or filtered. T0287 10 :SM 1zv1A 18 :EK T0287 13 :ADSKDK 1zv1A 21 :RYPWEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23866 # 1q08A.10.26 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 10 :SMIADSKDK 1q08A 69 :SIRIDPEHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23867 # 1u7nA.10.197 read from T0287.t06.many.frag # found chain 1u7nA in template set T0287 10 :SMIADSKDK 1u7nA 195 :ELLAADETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23868 # 1b43A.10.251 read from T0287.t06.many.frag # found chain 1b43A in template set Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1b43A)P259 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1b43A)P259 T0287 10 :SMIADSK 1b43A 251 :EIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23869 # 1ldjA.10.307 read from T0287.t06.many.frag # found chain 1ldjA in template set Warning: unaligning (T0287)S10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ldjA)N324 T0287 11 :MIADSKDK 1ldjA 325 :LVSRIQDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23870 # 1tu9A.10.13 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 10 :SMIADSKDK 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23871 # 1wb9A.10.437 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 10 :SMIA 1wb9A 438 :ALAD T0287 16 :KDK 1wb9A 444 :TDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23873 # 1zybA.10.193 read from T0287.t06.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)I12 (1zybA)L184 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 10 :SM 1zybA 182 :RC T0287 14 :DSKDK 1zybA 186 :DTRLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23875 # 1ak0.10.94 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K18 (1ak0)S103 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSKD 1ak0 95 :QRVSDSSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23876 # 1aa7A.10.11 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 10 :SMIA 1aa7A 12 :LSII T0287 15 :S 1aa7A 17 :S T0287 17 :DK 1aa7A 19 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23879 # 1qv9A.10.84 read from T0287.t06.many.frag # found chain 1qv9A in training set Warning: unaligning (T0287)D17 (1qv9A)Y92 because P (beta_P) conformation "forbidden" or filtered. T0287 10 :SMIADSK 1qv9A 85 :EMLADSE T0287 18 :K 1qv9A 93 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=23881 # 2bnlA.10.8 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 10 :SMIADSKDK 2bnlA 9 :QFIAENQNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23882 # 1tn6A.10.176 read from T0287.t06.many.frag # found chain 1tn6A in training set Warning: unaligning (T0287)A13 (1tn6A)R180 because L (left) conformation "forbidden" or filtered. T0287 10 :SMI 1tn6A 177 :EWL T0287 14 :DSKDK 1tn6A 181 :DPSQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23884 # 1i4dA.10.52 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 10 :SMIADSKDK 1i4dA 74 :DLSQKSPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23885 # 1xttA.10.15 read from T0287.t06.many.frag # found chain 1xttA in training set T0287 10 :SMIADSKDK 1xttA 16 :TQLRDKYTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23886 # 1v74B.10.10 read from T0287.t06.many.frag # found chain 1v74B in template set Warning: unaligning (T0287)S15 (1v74B)S16 because L (left) conformation "forbidden" or filtered. T0287 10 :SMIAD 1v74B 11 :KLFLA T0287 16 :KDK 1v74B 17 :KIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23888 # 1n5uA.11.166 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)D17 (1n5uA)D173 because D (zeta) conformation "forbidden" or filtered. T0287 11 :MIADSK 1n5uA 167 :ECCQAA T0287 18 :KK 1n5uA 174 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23890 # 1otvA.11.195 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 11 :MIADSKDKK 1otvA 196 :AYCDSAEKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23891 # 1qkrA.11.57 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 11 :MIADSKDKK 1qkrA 936 :LVRGGSGNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23892 # 1z0wA.11.183 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)I12 (1z0wA)V599 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :M 1z0wA 598 :H T0287 13 :ADS 1z0wA 600 :LED T0287 17 :DKK 1z0wA 604 :KKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23895 # 1ah7.11.200 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 11 :MIADSKDKK 1ah7 201 :KAAVSQEYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23896 # 1v58A.11.147 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 11 :MIADSKDKK 1v58A 148 :AILASKDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23897 # 1n1bA.11.214 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 11 :MIADSKDKK 1n1bA 264 :AYARRPDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23898 # 1elkA.11.42 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 11 :MIADSKDKK 1elkA 39 :IINETEEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23899 # 1ci4A.11.47 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 11 :MIADSKDKK 1ci4A 48 :QFLVLKKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23900 # 1zv1A.11.18 read from T0287.t06.many.frag # found chain 1zv1A in template set T0287 11 :MIADSKDKK 1zv1A 19 :KFRYPWELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23901 # 1aa7A.11.12 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)A13 (1aa7A)I15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1aa7A)P16 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MI 1aa7A 13 :SI T0287 15 :SKDKK 1aa7A 17 :SGPLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23903 # 1t0qB.11.273 read from T0287.t06.many.frag # found chain 1t0qB in template set T0287 11 :MIADSKDKK 1t0qB 274 :MALEKEGNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23904 # 1ak0.11.95 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 T0287 11 :MIADSKDK 1ak0 96 :RVSDSSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23905 # 1zc6A.11.172 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)S15 (1zc6A)G177 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1zc6A)H179 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIAD 1zc6A 173 :MALD T0287 16 :K 1zc6A 178 :R T0287 18 :KK 1zc6A 180 :SH Number of specific fragments extracted= 3 number of extra gaps= 2 total=23908 # 1hw1A.11.129 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)A13 (1hw1A)N132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MI 1hw1A 130 :TA T0287 15 :SKDKK 1hw1A 134 :VADHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23910 # 1g8mA.11.157 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 11 :MIADSKDKK 1g8mA 158 :EMAASKDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23911 # 2bl2A.11.42 read from T0287.t06.many.frag # found chain 2bl2A in template set T0287 11 :MIADSKDKK 2bl2A 43 :ALTTSQPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23912 # 1kxu.11.137 read from T0287.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MIA 1kxu 128 :NLR T0287 15 :SKDKK 1kxu 132 :SPLGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23914 # 1zybA.11.194 read from T0287.t06.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1zybA)D186 because Y (epsilon') conformation "forbidden" or filtered. T0287 11 :MI 1zybA 183 :CL T0287 15 :SKDKK 1zybA 187 :TRLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23916 # 1tu9A.11.14 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K16 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MIADS 1tu9A 13 :RCCAS T0287 18 :KK 1tu9A 20 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23918 # 1i4dA.11.53 read from T0287.t06.many.frag # found chain 1i4dA in template set Warning: unaligning (T0287)K18 (1i4dA)L82 because G (3-10) conformation "forbidden" or filtered. T0287 11 :MIADSKD 1i4dA 75 :LSQKSPE T0287 19 :K 1i4dA 83 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=23920 # 1wb9A.11.438 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 11 :MIA 1wb9A 439 :LAD T0287 16 :KDKK 1wb9A 444 :TDYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23922 # 1on2A.11.30 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 11 :MIADSKDKK 1on2A 31 :ALAVHPSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23923 # 1f7lA.11.17 read from T0287.t06.many.frag # found chain 1f7lA in training set T0287 11 :MIADSKDKK 1f7lA 18 :MAGRQKRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23924 # 1jfbA.11.156 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 11 :MI 1jfbA 156 :LL T0287 14 :DSKDKK 1jfbA 159 :VPFNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23926 # 1ez3A.11.36 read from T0287.t06.many.frag # found chain 1ez3A in template set Warning: unaligning (T0287)D17 (1ez3A)N66 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 (1ez3A)D68 because P (beta_P) conformation "forbidden" or filtered. T0287 11 :MIADSK 1ez3A 60 :AILASP T0287 18 :K 1ez3A 67 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=23928 # 1rzhM.11.236 read from T0287.t06.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)K16 (1rzhM)G242 because E (beta_S) conformation "forbidden" or filtered. T0287 11 :MIADS 1rzhM 237 :QIADR T0287 17 :DKK 1rzhM 243 :TAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23930 # 1xttA.11.16 read from T0287.t06.many.frag # found chain 1xttA in training set T0287 11 :MIADSKDKK 1xttA 17 :QLRDKYTDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23931 # 1q08A.11.27 read from T0287.t06.many.frag # found chain 1q08A in template set Warning: unaligning (T0287)A13 (1q08A)I72 because G (3-10) conformation "forbidden" or filtered. T0287 11 :MI 1q08A 70 :IR T0287 14 :DSKDKK 1q08A 73 :DPEHHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23933 # 1oksA.11.12 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 11 :MIADSKDKK 1oksA 13 :SSRLEEDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23934 # 1n5uA.12.167 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 12 :IADSKDKKE 1n5uA 168 :CCQAADKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23935 # 1otvA.12.196 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 12 :IADSKDKKE 1otvA 197 :YCDSAEKQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23936 # 1qkrA.12.58 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 12 :IADSKDKKE 1qkrA 937 :VRGGSGNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23937 # 1z0wA.12.184 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)D14 (1z0wA)E601 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1z0wA)D602 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1z0wA)G603 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IA 1z0wA 599 :VL T0287 17 :DKKE 1z0wA 604 :KKKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23939 # 1aa7A.12.13 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 12 :IADSKDKKE 1aa7A 14 :IIPSGPLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23940 # 1ah7.12.201 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 12 :IADSKDKKE 1ah7 202 :AAVSQEYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23941 # 1v58A.12.148 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 12 :IADSKDKKE 1v58A 149 :ILASKDPAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23942 # 1zv1A.12.19 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zv1A 20 :F T0287 14 :DSKDKKE 1zv1A 22 :YPWELMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23944 # 1n1bA.12.215 read from T0287.t06.many.frag # found chain 1n1bA in template set T0287 12 :IADSKDKKE 1n1bA 265 :YARRPDMNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23945 # 1elkA.12.43 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 12 :IADSKDKKE 1elkA 40 :INETEEGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23946 # 1ci4A.12.48 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 12 :IADSK 1ci4A 49 :FLVLK T0287 18 :KKE 1ci4A 55 :DED Number of specific fragments extracted= 2 number of extra gaps= 1 total=23948 # 1hw1A.12.130 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)A13 (1hw1A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 12 :I 1hw1A 131 :A T0287 14 :DSKDKKE 1hw1A 133 :EVADHAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23950 # 1kxu.12.138 read from T0287.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IA 1kxu 129 :LR T0287 15 :SKDKKE 1kxu 132 :SPLGQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23952 # 1t0qB.12.274 read from T0287.t06.many.frag # found chain 1t0qB in template set T0287 12 :IADSKDKKE 1t0qB 275 :ALEKEGNRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23953 # 1ak0.12.96 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)D17 (1ak0)L102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 12 :IADSK 1ak0 97 :VSDSS T0287 18 :K 1ak0 103 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=23955 # 1on2A.12.31 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)I12 (1on2A)L32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A13 (1on2A)A33 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKE 1on2A 34 :VHPSSVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=23956 # 1rzhM.12.237 read from T0287.t06.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)D14 (1rzhM)D240 because D (zeta) conformation "forbidden" or filtered. T0287 12 :IA 1rzhM 238 :IA T0287 15 :SKDKKE 1rzhM 241 :RGTAAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23958 # 1i4dA.12.54 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 12 :IADSKDKKE 1i4dA 76 :SQKSPELQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23959 # 2bl2A.12.43 read from T0287.t06.many.frag # found chain 2bl2A in template set Warning: unaligning (T0287)K16 (2bl2A)Q48 because D (zeta) conformation "forbidden" or filtered. T0287 12 :IADS 2bl2A 44 :LTTS T0287 17 :DKKE 2bl2A 49 :PEKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23961 # 1wb9A.12.439 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 12 :IA 1wb9A 440 :AD T0287 16 :KDKKE 1wb9A 444 :TDYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23963 # 1jfbA.12.157 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :I 1jfbA 157 :L T0287 14 :DSKDKKE 1jfbA 159 :VPFNDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23965 # 1m0wA.12.3 read from T0287.t06.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKE 1m0wA 7 :SKDQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23966 # 1oksA.12.13 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 12 :IADSKDKKE 1oksA 14 :SRLEEDRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23967 # 1tu9A.12.15 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K16 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1tu9A)G19 because T (delta_L) conformation "forbidden" or filtered. T0287 12 :IADS 1tu9A 14 :CCAS T0287 18 :KKE 1tu9A 20 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23969 # 1zybA.12.195 read from T0287.t06.many.frag # found chain 1zybA in template set Warning: unaligning (T0287)A13 (1zybA)D185 because L (left) conformation "forbidden" or filtered. T0287 12 :I 1zybA 184 :L T0287 14 :DSKDKKE 1zybA 186 :DTRLNIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23971 # 1lvaA.12.26 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 12 :IADSKDKKE 1lvaA 403 :ASLSLEETR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23972 # 1ymtA.12.18 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 12 :IADSKDKKE 1ymtA 235 :EPEEDQVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23973 # 1q52A.12.266 read from T0287.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q52A)L267 T0287 13 :ADSKDKKE 1q52A 268 :LDDGLVGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=23974 # 1zc6A.12.173 read from T0287.t06.many.frag # found chain 1zc6A in template set Warning: unaligning (T0287)E20 (1zc6A)S182 because Y (epsilon') conformation "forbidden" or filtered. T0287 12 :IADSKDKK 1zc6A 174 :ALDGRHSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=23975 # 1r6xA.12.11 read from T0287.t06.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)S15 (1r6xA)D16 because G (3-10) conformation "forbidden" or filtered. T0287 12 :IAD 1r6xA 13 :IAR T0287 16 :KDKKE 1r6xA 17 :ALKKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23977 # 1qkrA.13.59 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 13 :ADSKDKKEK 1qkrA 938 :RGGSGNKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23978 # 1n5uA.13.168 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 13 :ADSKDKKEK 1n5uA 169 :CQAADKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23979 # 1otvA.13.197 read from T0287.t06.many.frag # found chain 1otvA in template set Warning: unaligning (T0287)A13 (1otvA)C198 because N (gamma') conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1otvA 199 :DSAEKQNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23980 # 1aa7A.13.14 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :ADS 1aa7A 15 :IPS T0287 17 :DKKEK 1aa7A 19 :PLKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23982 # 1z0wA.13.185 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 13 :ADSKDKKEK 1z0wA 600 :LEDGKKKNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23983 # 1zv1A.13.20 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)A13 (1zv1A)R21 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1zv1A 22 :YPWELMPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23984 # 1on2A.13.32 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 13 :ADSKDKKEK 1on2A 33 :AVHPSSVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23985 # 1ah7.13.202 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 13 :ADSKDKKEK 1ah7 203 :AVSQEYADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23986 # 1ci4A.13.49 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :ADS 1ci4A 50 :LVL T0287 19 :KEK 1ci4A 56 :EDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23988 # 1lvaA.13.27 read from T0287.t06.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)A13 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1lvaA 405 :LSLEETRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23989 # 1kxu.13.139 read from T0287.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 13 :A 1kxu 130 :R T0287 15 :SKDKKEK 1kxu 132 :SPLGQEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23991 # 1n1bA.13.216 read from T0287.t06.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)S15 (1n1bA)R268 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 (1n1bA)N272 because P (beta_P) conformation "forbidden" or filtered. T0287 13 :AD 1n1bA 266 :AR T0287 16 :KD 1n1bA 269 :PD T0287 20 :EK 1n1bA 273 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23994 # 1m0wA.13.4 read from T0287.t06.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEK 1m0wA 7 :SKDQLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23995 # 1oksA.13.14 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 13 :ADSKDKKEK 1oksA 15 :RLEEDRKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23996 # 1hw1A.13.131 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 13 :ADSKDKKEK 1hw1A 132 :NEVADHADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23997 # 1v58A.13.149 read from T0287.t06.many.frag # found chain 1v58A in training set T0287 13 :ADSKDKKEK 1v58A 150 :LASKDPAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23998 # 1elkA.13.44 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 13 :ADSKDKKEK 1elkA 41 :NETEEGPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23999 # 1rzhM.13.238 read from T0287.t06.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)D14 (1rzhM)D240 because D (zeta) conformation "forbidden" or filtered. T0287 13 :A 1rzhM 239 :A T0287 15 :SKDKKEK 1rzhM 241 :RGTAAER Number of specific fragments extracted= 2 number of extra gaps= 1 total=24001 # 1q52A.13.267 read from T0287.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)S15 (1q52A)D270 because G (3-10) conformation "forbidden" or filtered. T0287 13 :AD 1q52A 268 :LD T0287 16 :KDKKEK 1q52A 271 :GLVGQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24003 # 1t0qB.13.275 read from T0287.t06.many.frag # found chain 1t0qB in template set T0287 13 :ADSKDKKEK 1t0qB 276 :LEKEGNREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24004 # 1ymtA.13.19 read from T0287.t06.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)A13 (1ymtA)P236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D14 (1ymtA)E237 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEK 1ymtA 238 :EDQVRAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24005 # 1ak0.13.97 read from T0287.t06.many.frag # found chain 1ak0 in training set Warning: unaligning (T0287)K18 (1ak0)S103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE in next template residue (1ak0)E105 Warning: unaligning (T0287)E20 because of BadResidue code BAD_PEPTIDE at template residue (1ak0)E105 T0287 13 :ADSKD 1ak0 98 :SDSSL T0287 21 :K 1ak0 106 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=24007 # 1jfbA.13.158 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)A13 (1jfbA)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 14 :DSKDKKEK 1jfbA 159 :VPFNDLEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=24008 # 1i4dA.13.55 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 13 :ADSKDKKEK 1i4dA 77 :QKSPELQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24009 # 1r6xA.13.12 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 13 :ADSKDKKEK 1r6xA 14 :ARDALKKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24010 # 2ayuA.13.86 read from T0287.t06.many.frag # found chain 2ayuA in template set T0287 13 :ADSKDKKEK 2ayuA 87 :GLPKNVKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24011 # 1yrtA.13.208 read from T0287.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1yrtA)G212 because T (delta_L) conformation "forbidden" or filtered. T0287 13 :A 1yrtA 209 :V T0287 15 :S 1yrtA 211 :S T0287 17 :DKKEK 1yrtA 213 :DSVTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=24014 # 1szhA.13.17 read from T0287.t06.many.frag # found chain 1szhA in training set Warning: unaligning (T0287)D14 (1szhA)C33 because E (beta_S) conformation "forbidden" or filtered. T0287 13 :A 1szhA 32 :C T0287 15 :SKDKKEK 1szhA 34 :TRNRQEC Number of specific fragments extracted= 2 number of extra gaps= 1 total=24016 # 1wb9A.13.440 read from T0287.t06.many.frag # found chain 1wb9A in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)A443 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)A443 T0287 13 :A 1wb9A 441 :D T0287 16 :KDKKEK 1wb9A 444 :TDYLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=24018 # 2bl2A.13.44 read from T0287.t06.many.frag # found chain 2bl2A in template set T0287 13 :ADSKDKKEK 2bl2A 45 :TTSQPEKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24019 # 1qkrA.14.60 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 14 :DSKDKKEKL 1qkrA 939 :GGSGNKRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24020 # 1n5uA.14.169 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 14 :DSKDKKEKL 1n5uA 170 :QAADKAACL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24021 # 1aa7A.14.15 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 14 :DS 1aa7A 16 :PS T0287 17 :DKKEKL 1aa7A 19 :PLKAEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24023 # 1otvA.14.198 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 14 :DSKDKKEKL 1otvA 199 :DSAEKQNRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24024 # 1on2A.14.33 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 14 :DSKDKKEKL 1on2A 34 :VHPSSVTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24025 # 1z0wA.14.186 read from T0287.t06.many.frag # found chain 1z0wA in template set Warning: unaligning (T0287)S15 (1z0wA)D602 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1z0wA 601 :E T0287 16 :KDKKEKL 1z0wA 603 :GKKKNRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24027 # 1lvaA.14.28 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 14 :DSKDKKEKL 1lvaA 405 :LSLEETRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24028 # 1kxu.14.140 read from T0287.t06.many.frag # found chain 1kxu in template set Warning: unaligning (T0287)D14 (1kxu)E131 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1kxu 132 :SPLGQEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24029 # 1hw1A.14.132 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)D14 (1hw1A)E133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :S 1hw1A 134 :V T0287 17 :DKKEKL 1hw1A 136 :DHADAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=24031 # 1rzhM.14.239 read from T0287.t06.many.frag # found chain 1rzhM in training set Warning: unaligning (T0287)S15 (1rzhM)R241 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1rzhM 240 :D T0287 16 :KDKKEKL 1rzhM 242 :GTAAERA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24033 # 1ci4A.14.50 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K16 (1ci4A)K53 because L (left) conformation "forbidden" or filtered. T0287 14 :DS 1ci4A 51 :VL T0287 17 :DKKEKL 1ci4A 54 :KDEDLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24035 # 1zv1A.14.21 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)D14 (1zv1A)Y22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S15 (1zv1A)P23 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKL 1zv1A 24 :WELMPLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=24036 # 1szhA.14.18 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 14 :DSKDKKEKL 1szhA 33 :CTRNRQECC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24037 # 1m0wA.14.5 read from T0287.t06.many.frag # found chain 1m0wA in training set Warning: unaligning (T0287)D14 because first residue in template chain is (1m0wA)P6 T0287 15 :SKDKKEKL 1m0wA 7 :SKDQLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24038 # 1r6xA.14.13 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 14 :DSKDKKEKL 1r6xA 15 :RDALKKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24039 # 1yovA.14.237 read from T0287.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)D14 because of BadResidue code BAD_PEPTIDE in next template residue (1yovA)T236 Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKL 1yovA 237 :YKEKEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=24040 # 1ah7.14.203 read from T0287.t06.many.frag # found chain 1ah7 in training set T0287 14 :DSKDKKEKL 1ah7 204 :VSQEYADKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24041 # 1ymtA.14.20 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 14 :DSKDKKEKL 1ymtA 237 :EEDQVRARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24042 # 1q52A.14.268 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 14 :DSKDKKEKL 1q52A 269 :DDGLVGQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24043 # 1oksA.14.15 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 14 :DSKDKKEKL 1oksA 16 :LEEDRKRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24044 # 1gxjA.14.40 read from T0287.t06.many.frag # found chain 1gxjA in template set T0287 14 :DSKDKKEKL 1gxjA 525 :EVDEKYSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24045 # 1yiiA.14.28 read from T0287.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)D14 (1yiiA)G30 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :S 1yiiA 31 :M T0287 17 :DKKEKL 1yiiA 33 :TDEETI Number of specific fragments extracted= 2 number of extra gaps= 2 total=24047 # 1xdpA.14.66 read from T0287.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)D14 (1xdpA)G68 because S (epsilon) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1xdpA 69 :SNSHSRHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24048 # 1g2yA.14.17 read from T0287.t06.many.frag # found chain 1g2yA in training set T0287 14 :DSKDKKEKL 1g2yA 18 :ESGLSKEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24049 # 1n1bA.14.217 read from T0287.t06.many.frag # found chain 1n1bA in template set Warning: unaligning (T0287)S15 (1n1bA)R268 because P (beta_P) conformation "forbidden" or filtered. T0287 14 :D 1n1bA 267 :R T0287 16 :KDKKEKL 1n1bA 269 :PDMNPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24051 # 1jfbA.14.159 read from T0287.t06.many.frag # found chain 1jfbA in training set Warning: unaligning (T0287)D14 (1jfbA)V159 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :SKDKKEKL 1jfbA 160 :PFNDLEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24052 # 1elkA.14.45 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 14 :DSKDKKEKL 1elkA 42 :ETEEGPKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24053 # 1yrtA.14.209 read from T0287.t06.many.frag # found chain 1yrtA in template set Warning: unaligning (T0287)D14 (1yrtA)T210 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1yrtA)G212 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K18 (1yrtA)S214 because P (beta_P) conformation "forbidden" or filtered. T0287 15 :S 1yrtA 211 :S T0287 17 :D 1yrtA 213 :D T0287 19 :KEKL 1yrtA 215 :VTDY Number of specific fragments extracted= 3 number of extra gaps= 3 total=24056 # 1i4dA.14.56 read from T0287.t06.many.frag # found chain 1i4dA in template set T0287 14 :DSKDKKEKL 1i4dA 78 :KSPELQEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24057 # 2ayuA.14.87 read from T0287.t06.many.frag # found chain 2ayuA in template set T0287 14 :DSKDKKEKL 2ayuA 88 :LPKNVKEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24058 # 1qkrA.15.61 read from T0287.t06.many.frag # found chain 1qkrA in training set Warning: unaligning (T0287)S15 (1qkrA)G940 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1qkrA 941 :SGNKRALI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24059 # 1aa7A.15.16 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 15 :S 1aa7A 17 :S T0287 17 :DKKEKLI 1aa7A 19 :PLKAEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24061 # 1szhA.15.19 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 15 :SKDKKEKLI 1szhA 34 :TRNRQECCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24062 # 1on2A.15.34 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 15 :SKDKKEKLI 1on2A 35 :HPSSVTKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24063 # 1z0wA.15.187 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 15 :SKDKKEKLI 1z0wA 602 :DGKKKNRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24064 # 1otvA.15.199 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 15 :SKDKKEKLI 1otvA 200 :SAEKQNRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=24065 # 1r6xA.15.14 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 15 :SKDKKEKLI 1r6xA 16 :DALKKNELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24066 # 1w8iA.15.55 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 15 :SKDKKEKLI 1w8iA 56 :KKLPADKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24067 # 1g2yA.15.18 read from T0287.t06.many.frag # found chain 1g2yA in training set T0287 15 :SKDKKEKLI 1g2yA 19 :SGLSKEALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24068 # 1lvaA.15.29 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 15 :SKDKKEKLI 1lvaA 406 :SLEETRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24069 # 1rzhM.15.240 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 15 :SKDKKEKLI 1rzhM 241 :RGTAAERAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24070 # 1kxu.15.141 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 15 :SKDKKEKLI 1kxu 132 :SPLGQEKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24071 # 1n5uA.15.170 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 15 :SKDKKEKLI 1n5uA 171 :AADKAACLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24072 # 1yiiA.15.29 read from T0287.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)K18 (1yiiA)D34 because N (gamma') conformation "forbidden" or filtered. T0287 15 :SKD 1yiiA 31 :MGT T0287 19 :KEKLI 1yiiA 35 :EETIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24074 # 1hw1A.15.133 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 15 :SKDKKEKLI 1hw1A 134 :VADHADAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24075 # 1ci4A.15.51 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 15 :SK 1ci4A 52 :LK T0287 18 :KKEKLI 1ci4A 55 :DEDLFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24077 # 1ymtA.15.21 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 15 :SKDKKEKLI 1ymtA 238 :EDQVRARIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24078 # 1yovA.15.238 read from T0287.t06.many.frag # found chain 1yovA in template set Warning: unaligning (T0287)S15 because of BadResidue code BAD_PEPTIDE at template residue (1yovA)T236 T0287 16 :KDKKEKLI 1yovA 237 :YKEKEDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24079 # 1uw4B.15.16 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 15 :SKDKKEKLI 1uw4B 784 :SKVTTEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24080 # 1r7jA.15.32 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 15 :SKDKKEKLI 1r7jA 33 :SYALTGRYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24081 # 1oksA.15.16 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 15 :SKDKKEKLI 1oksA 17 :EEDRKRYLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24082 # 1xdpA.15.67 read from T0287.t06.many.frag # found chain 1xdpA in template set Warning: unaligning (T0287)K18 (1xdpA)H72 because N (gamma') conformation "forbidden" or filtered. T0287 15 :SKD 1xdpA 69 :SNS T0287 19 :KEKLI 1xdpA 73 :SRHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24084 # 1usyA.15.142 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 15 :SKDKKEKLI 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24085 # 1q52A.15.269 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 15 :SKDKKEKLI 1q52A 270 :DGLVGQQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24086 # 1zv1A.15.22 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)S15 (1zv1A)P23 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KDKKEKLI 1zv1A 24 :WELMPLMY Number of specific fragments extracted= 1 number of extra gaps= 1 total=24087 # 1m0wA.15.6 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 15 :SKDKKEKLI 1m0wA 7 :SKDQLNELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24088 # 1gxjA.15.41 read from T0287.t06.many.frag # found chain 1gxjA in template set T0287 15 :SKDKKEKLI 1gxjA 526 :VDEKYSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24089 # 1x3zB.15.34 read from T0287.t06.many.frag # found chain 1x3zB in template set T0287 15 :SKDKKEKLI 1x3zB 272 :NPEALAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24090 # 1elkA.15.46 read from T0287.t06.many.frag # found chain 1elkA in training set T0287 15 :SKDKKEKLI 1elkA 43 :TEEGPKDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24091 # 1v0jA.15.114 read from T0287.t06.many.frag # found chain 1v0jA in template set Warning: unaligning (T0287)S15 (1v0jA)K115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K16 (1v0jA)Y116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)T118 Warning: unaligning (T0287)K18 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)T118 T0287 19 :KEKLI 1v0jA 119 :PEQAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24092 # 1qkrA.16.62 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 16 :KDKKEKLIE 1qkrA 941 :SGNKRALIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24093 # 1on2A.16.35 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 16 :KDKKEKLIE 1on2A 36 :PSSVTKMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24094 # 1szhA.16.20 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 16 :KDKKEKLIE 1szhA 35 :RNRQECCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24095 # 1r6xA.16.15 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 16 :KDKKEKLIE 1r6xA 17 :ALKKNELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24096 # 1uw4B.16.17 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 16 :KDKKEKLIE 1uw4B 785 :KVTTEKVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24097 # 1aa7A.16.17 read from T0287.t06.many.frag # found chain 1aa7A in template set Warning: unaligning (T0287)K16 (1aa7A)G18 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1aa7A 19 :PLKAEIAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24098 # 1w8iA.16.56 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 16 :KDKKEKLIE 1w8iA 57 :KLPADKFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24099 # 1lvaA.16.30 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 16 :KDKKEKLIE 1lvaA 407 :LEETRKLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24100 # 1r7jA.16.33 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 16 :KDKKEKLIE 1r7jA 34 :YALTGRYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24101 # 1otvA.16.200 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 16 :KDKKEKLIE 1otvA 201 :AEKQNRMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24102 # 1ci4A.16.52 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)K18 (1ci4A)D55 because P (beta_P) conformation "forbidden" or filtered. T0287 16 :KD 1ci4A 53 :KK T0287 19 :KEKLIE 1ci4A 56 :EDLFRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24104 # 1usyA.16.143 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 16 :KDKKEKLIE 1usyA 144 :KDLHEKVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24105 # 1rzhM.16.241 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 16 :KDKKEKLIE 1rzhM 242 :GTAAERAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24106 # 1z0wA.16.188 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 16 :KDKKEKLIE 1z0wA 603 :GKKKNRLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24107 # 1g2yA.16.19 read from T0287.t06.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)K16 (1g2yA)G20 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1g2yA)L21 because P (beta_P) conformation "forbidden" or filtered. T0287 18 :KKEKLIE 1g2yA 22 :SKEALIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24108 # 1yovA.16.239 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 16 :KDKKEKLIE 1yovA 237 :YKEKEDFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24109 # 1gxjA.16.42 read from T0287.t06.many.frag # found chain 1gxjA in template set Warning: unaligning (T0287)K16 (1gxjA)D527 because P (beta_P) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1gxjA 528 :EKYSLAVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=24110 # 1ymtA.16.22 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 16 :KDKKEKLIE 1ymtA 239 :DQVRARIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24111 # 1hw1A.16.134 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)K16 (1hw1A)A135 because P (beta_P) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1hw1A 136 :DHADAFAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24112 # 1kxu.16.142 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 16 :KDKKEKLIE 1kxu 133 :PLGQEKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24113 # 1oksA.16.17 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 16 :KDKKEKLIE 1oksA 18 :EDRKRYLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24114 # 1yiiA.16.30 read from T0287.t06.many.frag # found chain 1yiiA in training set Warning: unaligning (T0287)K16 (1yiiA)G32 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D17 (1yiiA)T33 because E (beta_S) conformation "forbidden" or filtered. T0287 18 :KKEKLIE 1yiiA 34 :DEETILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24115 # 1jr2A.16.139 read from T0287.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIE 1jr2A 122 :AEKLAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=24117 # 1q52A.16.270 read from T0287.t06.many.frag # found chain 1q52A in training set Warning: unaligning (T0287)K16 (1q52A)G271 because S (epsilon) conformation "forbidden" or filtered. T0287 17 :DKKEKLIE 1q52A 272 :LVGQQLFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24118 # 1p4xA.16.63 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 16 :KDKKEKLIE 1p4xA 64 :QSDLVQHIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24119 # 1m0wA.16.7 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 16 :KDKKEKLIE 1m0wA 8 :KDQLNELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24120 # 1xdpA.16.68 read from T0287.t06.many.frag # found chain 1xdpA in template set T0287 16 :KDKKEKLIE 1xdpA 70 :NSHSRHLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24121 # 1x3zB.16.35 read from T0287.t06.many.frag # found chain 1x3zB in template set Warning: unaligning (T0287)K18 (1x3zB)A275 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1x3zB 273 :PE T0287 19 :KEKLIE 1x3zB 276 :LAPLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24123 # 2d28C.16.3 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 16 :KDKKEKLIE 2d28C 4 :RSAETRIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24124 # 1zv1A.16.23 read from T0287.t06.many.frag # found chain 1zv1A in template set Warning: unaligning (T0287)K18 (1zv1A)L26 because G (3-10) conformation "forbidden" or filtered. T0287 16 :KD 1zv1A 24 :WE T0287 19 :KEKLIE 1zv1A 27 :MPLMYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24126 # 1qkrA.17.63 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 17 :DKKEKLIES 1qkrA 942 :GNKRALIQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24127 # 1on2A.17.36 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 17 :DKKEKLIES 1on2A 37 :SSVTKMVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24128 # 1szhA.17.21 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 17 :DKKEKLIES 1szhA 36 :NRQECCIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24129 # 1uw4B.17.18 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 17 :DKKEKLIES 1uw4B 786 :VTTEKVLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24130 # 1r6xA.17.16 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 17 :DKKEKLIES 1r6xA 18 :LKKNELLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24131 # 1w8iA.17.57 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 17 :DKKEKLIES 1w8iA 58 :LPADKFLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24132 # 1usyA.17.144 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 17 :DKKEKLIES 1usyA 145 :DLHEKVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24133 # 1aa7A.17.18 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 17 :DKKEKLIES 1aa7A 19 :PLKAEIAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24134 # 1r7jA.17.34 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 17 :DKKEKLIES 1r7jA 35 :ALTGRYIKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24135 # 1ci4A.17.53 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)D17 (1ci4A)K54 because L (left) conformation "forbidden" or filtered. T0287 18 :KKEKLIES 1ci4A 55 :DEDLFREW Number of specific fragments extracted= 1 number of extra gaps= 1 total=24136 # 1lvaA.17.31 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 17 :DKKEKLIES 1lvaA 408 :EETRKLLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24137 # 1jr2A.17.140 read from T0287.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 17 :D 1jr2A 120 :G T0287 19 :KEKLIES 1jr2A 122 :AEKLAEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24139 # 1otvA.17.201 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 17 :DKKEKLIES 1otvA 202 :EKQNRMLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24140 # 1yovA.17.240 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 17 :DKKEKLIES 1yovA 238 :KEKEDFRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24141 # 1ymtA.17.23 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 17 :DKKEKLIES 1ymtA 240 :QVRARIVGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24142 # 1z0wA.17.189 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 17 :DKKEKLIES 1z0wA 604 :KKKNRLMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24143 # 1g2yA.17.20 read from T0287.t06.many.frag # found chain 1g2yA in training set Warning: unaligning (T0287)D17 (1g2yA)L21 because P (beta_P) conformation "forbidden" or filtered. T0287 18 :KKEKLIES 1g2yA 22 :SKEALIQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24144 # 2d28C.17.4 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 17 :DKKEKLIES 2d28C 5 :SAETRIVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24145 # 1s9rA.17.88 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 17 :DKKEKLIES 1s9rA 89 :EAKDKLIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24146 # 1yiiA.17.31 read from T0287.t06.many.frag # found chain 1yiiA in training set T0287 17 :DKKEKLIES 1yiiA 33 :TDEETILKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24147 # 1q52A.17.271 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 17 :DKKEKLIES 1q52A 272 :LVGQQLFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24148 # 1kxu.17.143 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 17 :DKKEKLIES 1kxu 134 :LGQEKALEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24149 # 1oksA.17.18 read from T0287.t06.many.frag # found chain 1oksA in training set T0287 17 :DKKEKLIES 1oksA 19 :DRKRYLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24150 # 1rzhM.17.242 read from T0287.t06.many.frag # found chain 1rzhM in training set T0287 17 :DKKEKLIES 1rzhM 243 :TAAERAALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24151 # 1m0wA.17.8 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 17 :DKKEKLIES 1m0wA 9 :DQLNELIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24152 # 1x3zB.17.36 read from T0287.t06.many.frag # found chain 1x3zB in template set T0287 17 :DKKEKLIES 1x3zB 274 :EALAPLLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24153 # 1hw1A.17.135 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 17 :DKKEKLIES 1hw1A 136 :DHADAFAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24154 # 1wu7A.17.192 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 17 :DKKEKLIES 1wu7A 193 :ISREEFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24155 # 1q08A.17.19 read from T0287.t06.many.frag # found chain 1q08A in template set T0287 17 :DKKEKLIES 1q08A 62 :ESIRELLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24156 # 1gk9B.17.313 read from T0287.t06.many.frag # found chain 1gk9B in training set T0287 17 :DKKEKLIES 1gk9B 314 :DPRRQLVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24157 # 1on2A.18.37 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 18 :KKEKLIESL 1on2A 38 :SVTKMVQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24158 # 1uw4B.18.19 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 18 :KKEKLIESL 1uw4B 787 :TTEKVLRQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24159 # 1r6xA.18.17 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 18 :KKEKLIESL 1r6xA 19 :KKNELLSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24160 # 1r7jA.18.35 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 18 :KKEKLIESL 1r7jA 36 :LTGRYIKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=24161 # 1w8iA.18.58 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 18 :KKEKLIESL 1w8iA 59 :PADKFLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24162 # 1lvaA.18.32 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 18 :KKEKLIESL 1lvaA 409 :ETRKLLQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24163 # 1szhA.18.22 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 18 :KKEKLIESL 1szhA 37 :RQECCIEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24164 # 1qkrA.18.64 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 18 :KKEKLIESL 1qkrA 943 :NKRALIQCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24165 # 1usyA.18.145 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)K18 (1usyA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1usyA 147 :HEKVLNLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24166 # 1aa7A.18.19 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 18 :KKEKLIESL 1aa7A 20 :LKAEIAQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24167 # 1jr2A.18.141 read from T0287.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)K18 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0287 19 :KEKLIESL 1jr2A 122 :AEKLAEYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24168 # 2d28C.18.5 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 18 :KKEKLIESL 2d28C 6 :AETRIVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24169 # 1otvA.18.202 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 18 :KKEKLIESL 1otvA 203 :KQNRMLEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24170 # 1ci4A.18.54 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 18 :KKEKLIESL 1ci4A 55 :DEDLFREWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24171 # 1i58A.18.103 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 18 :KKEKLIESL 1i58A 455 :DKEKIIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24172 # 1yovA.18.241 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 18 :KKEKLIESL 1yovA 239 :EKEDFRDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24173 # 1s9rA.18.89 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 18 :KKEKLIESL 1s9rA 90 :AKDKLIEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24174 # 1sflA.18.112 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 18 :KKEKLIESL 1sflA 113 :KHQRIITHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24175 # 1q52A.18.272 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 18 :KKEKLIESL 1q52A 273 :VGQQLFAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24176 # 1z0wA.18.190 read from T0287.t06.many.frag # found chain 1z0wA in template set T0287 18 :KKEKLIESL 1z0wA 605 :KKNRLMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24177 # 1kxu.18.144 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 18 :KKEKLIESL 1kxu 135 :GQEKALEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24178 # 2ahrA.18.170 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 18 :KKEKLIESL 2ahrA 168 :YIYLFIEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24179 # 1p4xA.18.65 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 18 :KKEKLIESL 1p4xA 66 :DLVQHIKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24180 # 1ctf.18.17 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 18 :KKEKLIESL 1ctf 64 :NKVAVIKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24181 # 1ymtA.18.24 read from T0287.t06.many.frag # found chain 1ymtA in training set T0287 18 :KKEKLIESL 1ymtA 241 :VRARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24182 # 1wu7A.18.193 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 18 :KKEKLIESL 1wu7A 194 :SREEFVDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24183 # 1yvrA.18.220 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 18 :KKEKLIESL 1yvrA 221 :ETEKVLKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24184 # 1m0wA.18.9 read from T0287.t06.many.frag # found chain 1m0wA in training set T0287 18 :KKEKLIESL 1m0wA 10 :QLNELIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24185 # 1yiiA.18.32 read from T0287.t06.many.frag # found chain 1yiiA in training set T0287 18 :KKEKLIESL 1yiiA 34 :DEETILKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24186 # 1dc1A.18.89 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 18 :KKEKLIESL 1dc1A 90 :DKKESINNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24187 # 1on2A.19.38 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 19 :KEKLIESLQ 1on2A 39 :VTKMVQKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24188 # 1uw4B.19.20 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 19 :KEKLIESLQ 1uw4B 788 :TEKVLRQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24189 # 1w8iA.19.59 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 19 :KEKLIESLQ 1w8iA 60 :ADKFLEGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24190 # 2d28C.19.6 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 19 :KEKLIESLQ 2d28C 7 :ETRIVEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24191 # 1r7jA.19.36 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 19 :KEKLIESLQ 1r7jA 37 :TGRYIKMLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24192 # 1r6xA.19.18 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 19 :KEKLIESLQ 1r6xA 20 :KNELLSEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24193 # 1lvaA.19.33 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 19 :KEKLIESLQ 1lvaA 410 :TRKLLQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24194 # 1szhA.19.23 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 19 :KEKLIESLQ 1szhA 38 :QECCIEIMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24195 # 1aa7A.19.20 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 19 :KEKLIESLQ 1aa7A 21 :KAEIAQRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24196 # 1jr2A.19.142 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 19 :KEKLIESLQ 1jr2A 122 :AEKLAEYIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24197 # 1ci4A.19.55 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 19 :KEKLIESLQ 1ci4A 56 :EDLFREWLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24198 # 2ahrA.19.171 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 19 :KEKLIESLQ 2ahrA 169 :IYLFIEALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24199 # 1i58A.19.104 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 19 :KEKLIESLQ 1i58A 456 :KEKIIRKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24200 # 1sflA.19.113 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 19 :KEKLIESLQ 1sflA 114 :HQRIITHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24201 # 1jkeA.19.41 read from T0287.t06.many.frag # found chain 1jkeA in training set T0287 19 :KEKLIESLQ 1jkeA 42 :ANRLCERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24202 # 2fnuA.19.297 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 19 :KEKLIESLQ 2fnuA 298 :KKLILESLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24203 # 1usyA.19.146 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 19 :KEKLIESLQ 1usyA 147 :HEKVLNLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24204 # 1r71A.19.23 read from T0287.t06.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)K19 because of BadResidue code BAD_PEPTIDE at template residue (1r71A)A140 T0287 20 :EKLIESLQ 1r71A 141 :DQVIENLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24205 # 1ctf.19.18 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 19 :KEKLIESLQ 1ctf 65 :KVAVIKAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24206 # 1otvA.19.203 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 19 :KEKLIESLQ 1otvA 204 :QNRMLEILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24207 # 1yovA.19.242 read from T0287.t06.many.frag # found chain 1yovA in template set T0287 19 :KEKLIESLQ 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24208 # 1dc1A.19.90 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 19 :KEKLIESLQ 1dc1A 91 :KKESINNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24209 # 1wu7A.19.194 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 19 :KEKLIESLQ 1wu7A 195 :REEFVDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24210 # 1q52A.19.273 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 19 :KEKLIESLQ 1q52A 274 :GQQLFAGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24211 # 1s9rA.19.90 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 19 :KEKLIESLQ 1s9rA 91 :KDKLIEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24212 # 1p4xA.19.66 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 19 :KEKLIESLQ 1p4xA 67 :LVQHIKVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24213 # 1qkrA.19.65 read from T0287.t06.many.frag # found chain 1qkrA in training set T0287 19 :KEKLIESLQ 1qkrA 944 :KRALIQCAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24214 # 2b0tA.19.90 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 19 :KEKLIESLQ 2b0tA 91 :LKAAIKELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24215 # 1kxu.19.145 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 19 :KEKLIESLQ 1kxu 136 :QEKALEQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24216 # 1ymtA.19.25 read from T0287.t06.many.frag # found chain 1ymtA in training set Warning: unaligning (T0287)Q27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ymtA)Q259 T0287 19 :KEKLIESL 1ymtA 242 :RARIVGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24217 # 1on2A.20.39 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 20 :EKLIESLQE 1on2A 40 :TKMVQKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24218 # 1uw4B.20.21 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 20 :EKLIESLQE 1uw4B 789 :EKVLRQMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24219 # 2d28C.20.7 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 20 :EKLIESLQE 2d28C 8 :TRIVEALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24220 # 1w8iA.20.60 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 20 :EKLIESLQE 1w8iA 61 :DKFLEGFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24221 # 1r7jA.20.37 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 20 :EKLIESLQE 1r7jA 38 :GRYIKMLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24222 # 2ahrA.20.172 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 20 :EKLIESLQE 2ahrA 170 :YLFIEALAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24223 # 1i58A.20.105 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 20 :EKLIESLQE 1i58A 457 :EKIIRKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24224 # 1lvaA.20.34 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 20 :EKLIESLQE 1lvaA 411 :RKLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24225 # 1sflA.20.114 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 20 :EKLIESLQE 1sflA 115 :QRIITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24226 # 1r6xA.20.19 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 20 :EKLIESLQE 1r6xA 21 :NELLSEAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24227 # 1r71A.20.24 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 20 :EKLIESLQE 1r71A 141 :DQVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24228 # 1ci4A.20.56 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 20 :EKLIESLQE 1ci4A 57 :DLFREWLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24229 # 1szhA.20.24 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 20 :EKLIESLQE 1szhA 39 :ECCIEIMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24230 # 1aa7A.20.21 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 20 :EKLIESLQE 1aa7A 22 :AEIAQRLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=24231 # 1dc1A.20.91 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 20 :EKLIESLQE 1dc1A 92 :KESINNLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24232 # 2fnuA.20.298 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 20 :EKLIESLQE 2fnuA 299 :KLILESLHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24233 # 1jr2A.20.143 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 20 :EKLIESLQE 1jr2A 123 :EKLAEYICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24234 # 1jkeA.20.42 read from T0287.t06.many.frag # found chain 1jkeA in training set T0287 20 :EKLIESLQE 1jkeA 43 :NRLCERVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24235 # 1s9rA.20.91 read from T0287.t06.many.frag # found chain 1s9rA in training set T0287 20 :EKLIESLQE 1s9rA 92 :DKLIEEFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24236 # 1ctf.20.19 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 20 :EKLIESLQE 1ctf 66 :VAVIKAVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24237 # 2b0tA.20.91 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 20 :EKLIESLQE 2b0tA 92 :KAAIKELQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24238 # 1p4xA.20.67 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 20 :EKLIESLQE 1p4xA 68 :VQHIKVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24239 # 1kxu.20.146 read from T0287.t06.many.frag # found chain 1kxu in template set T0287 20 :EKLIESLQE 1kxu 137 :EKALEQILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24240 # 1wu7A.20.195 read from T0287.t06.many.frag # found chain 1wu7A in template set T0287 20 :EKLIESLQE 1wu7A 196 :EEFVDQLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24241 # 1q52A.20.274 read from T0287.t06.many.frag # found chain 1q52A in training set T0287 20 :EKLIESLQE 1q52A 275 :QQLFAGEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24242 # 1xg8A.20.66 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 20 :EKLIESLQE 1xg8A 58 :LQFIERIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24243 # 1oi7A.20.258 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 20 :EKLIESLQE 1oi7A 259 :ESKLRAFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24244 # 1qvzA.20.81 read from T0287.t06.many.frag # found chain 1qvzA in template set Warning: unaligning (T0287)E28 (1qvzA)T90 because E (beta_S) conformation "forbidden" or filtered. T0287 20 :EKLIESLQ 1qvzA 82 :NKTLAKIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24245 # 1otvA.20.204 read from T0287.t06.many.frag # found chain 1otvA in template set T0287 20 :EKLIESLQE 1otvA 205 :NRMLEILQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24246 # 1pu6A.20.48 read from T0287.t06.many.frag # found chain 1pu6A in training set T0287 20 :EKLIESLQE 1pu6A 49 :LKSLENLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24247 # 2d28C.21.8 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 21 :KLIESLQEN 2d28C 9 :RIVEALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24248 # 1on2A.21.40 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 21 :KLIESLQEN 1on2A 41 :KMVQKLDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24249 # 1uw4B.21.22 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 21 :KLIESLQEN 1uw4B 790 :KVLRQMRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24250 # 1w8iA.21.61 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 21 :KLIESLQEN 1w8iA 62 :KFLEGFVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=24251 # 1r7jA.21.38 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 21 :KLIESLQEN 1r7jA 39 :RYIKMLMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24252 # 1r71A.21.25 read from T0287.t06.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)N29 (1r71A)N150 because L (left) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1r71A 142 :QVIENLQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24253 # 1i58A.21.106 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 21 :KLIESLQEN 1i58A 458 :KIIRKAIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24254 # 1sflA.21.115 read from T0287.t06.many.frag # found chain 1sflA in template set Warning: unaligning (T0287)N29 (1sflA)Y124 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1sflA 116 :RIITHLQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24255 # 2ahrA.21.173 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 21 :KLIESLQEN 2ahrA 171 :LFIEALAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24256 # 1aa7A.21.22 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 21 :KLIESLQEN 1aa7A 23 :EIAQRLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24257 # 2fnuA.21.299 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 21 :KLIESLQEN 2fnuA 300 :LILESLHKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24258 # 1szhA.21.25 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 21 :KLIESLQEN 1szhA 40 :CCIEIMKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24259 # 1ci4A.21.57 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 21 :KLIESLQEN 1ci4A 58 :LFREWLKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24260 # 1r6xA.21.20 read from T0287.t06.many.frag # found chain 1r6xA in training set T0287 21 :KLIESLQEN 1r6xA 22 :ELLSEAQSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24261 # 1pu6A.21.49 read from T0287.t06.many.frag # found chain 1pu6A in training set T0287 21 :KLIESLQEN 1pu6A 50 :KSLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24262 # 1jkeA.21.43 read from T0287.t06.many.frag # found chain 1jkeA in training set T0287 21 :KLIESLQEN 1jkeA 44 :RLCERVLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24263 # 1sd4A.21.28 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 21 :KLIESLQEN 1sd4A 29 :EIVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24264 # 1jr2A.21.144 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 21 :KLIESLQEN 1jr2A 124 :KLAEYICSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24265 # 1ctf.21.20 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 21 :KLIESLQEN 1ctf 67 :AVIKAVRGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24266 # 1yj7A.21.48 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 21 :KLIESLQEN 1yj7A 68 :RAITILNNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24267 # 2b0tA.21.92 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 21 :KLIESLQEN 2b0tA 93 :AAIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24268 # 1lvaA.21.35 read from T0287.t06.many.frag # found chain 1lvaA in template set Warning: unaligning (T0287)N29 (1lvaA)A420 because G (3-10) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1lvaA 412 :KLLQSMAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24269 # 1oi7A.21.259 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 21 :KLIESLQEN 1oi7A 260 :SKLRAFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24270 # 1dc1A.21.92 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 21 :KLIESLQEN 1dc1A 93 :ESINNLIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24271 # 2bwbA.21.8 read from T0287.t06.many.frag # found chain 2bwbA in template set T0287 21 :KLIESLQEN 2bwbA 334 :HQLRQLNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24272 # 1qvzA.21.82 read from T0287.t06.many.frag # found chain 1qvzA in template set T0287 21 :KLIESLQEN 1qvzA 83 :KTLAKIKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24273 # 1l0bA.21.75 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1l0bA 1664 :WVIKSIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24274 # 2tpt.21.5 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 2tpt 6 :EIIRKKRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24275 # 1uj8A.21.41 read from T0287.t06.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 21 :KLIESLQE 1uj8A 42 :DMHQWICD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24276 # 1jalA.21.141 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 21 :KLIESLQEN 1jalA 142 :RAIQRLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24277 # 2d28C.22.9 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2d28C 10 :IVEALLER Number of specific fragments extracted= 1 number of extra gaps= 1 total=24278 # 1on2A.22.41 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1on2A 42 :MVQKLDKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24279 # 1uw4B.22.23 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 22 :LIESLQENE 1uw4B 791 :VLRQMRKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24280 # 1i58A.22.107 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 22 :LIESLQENE 1i58A 459 :IIRKAIEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24281 # 1yj7A.22.49 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1yj7A 69 :AITILNNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24282 # 1w8iA.22.62 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 22 :LIESLQENE 1w8iA 63 :FLEGFVESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24283 # 1l0bA.22.76 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1l0bA)K1673 because E (beta_S) conformation "forbidden" or filtered. T0287 22 :LIESLQE 1l0bA 1665 :VIKSIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24284 # 1r71A.22.26 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 22 :LIESLQENE 1r71A 143 :VIENLQRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24285 # 1r7jA.22.39 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 22 :LIESLQENE 1r7jA 40 :YIKMLMDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24286 # 1sd4A.22.29 read from T0287.t06.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)E30 (1sd4A)K38 because Y (epsilon') conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1sd4A 30 :IVVEIQKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=24287 # 1sflA.22.116 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 22 :LIESLQENE 1sflA 117 :IITHLQQYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24288 # 2ahrA.22.174 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 22 :LIESLQENE 2ahrA 172 :FIEALAKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24289 # 2fnuA.22.300 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 22 :LIESLQENE 2fnuA 301 :ILESLHKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24290 # 1oi7A.22.260 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 22 :LIESLQENE 1oi7A 261 :KLRAFAEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24291 # 1pu6A.22.50 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1pu6A 51 :SLENLKNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24292 # 1ctf.22.21 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 22 :LIESLQENE 1ctf 68 :VIKAVRGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24293 # 2b0tA.22.93 read from T0287.t06.many.frag # found chain 2b0tA in template set Warning: unaligning (T0287)E30 (2b0tA)G102 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2b0tA 94 :AIKELQDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24294 # 1szhA.22.26 read from T0287.t06.many.frag # found chain 1szhA in training set T0287 22 :LIESLQENE 1szhA 41 :CIEIMKFGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24295 # 1ci4A.22.58 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 22 :LIESLQENE 1ci4A 59 :FREWLKDTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24296 # 1r6xA.22.21 read from T0287.t06.many.frag # found chain 1r6xA in training set Warning: unaligning (T0287)Q27 (1r6xA)Q28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E28 (1r6xA)S29 because P (beta_P) conformation "forbidden" or filtered. T0287 22 :LIESL 1r6xA 23 :LLSEA T0287 29 :NE 1r6xA 30 :SD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24298 # 1aa7A.22.23 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 22 :LIESLQENE 1aa7A 24 :IAQRLEDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24299 # 2tpt.22.6 read from T0287.t06.many.frag # found chain 2tpt in template set T0287 22 :LIESLQENE 2tpt 7 :IIRKKRDGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24300 # 1jr2A.22.145 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 22 :LIESLQENE 1jr2A 125 :LAEYICSRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24301 # 1nuuA.22.222 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 1nuuA 223 :VITYIKDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=24302 # 2cz1A.22.24 read from T0287.t06.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 22 :LIESLQEN 2cz1A 25 :LFRALDGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24303 # 2bwbA.22.9 read from T0287.t06.many.frag # found chain 2bwbA in template set T0287 22 :LIESLQENE 2bwbA 335 :QLRQLNDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24304 # 1lvaA.22.36 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 22 :LIESLQENE 1lvaA 413 :LLQSMAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24305 # 1uj8A.22.42 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 22 :LIESLQENE 1uj8A 43 :MHQWICDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24306 # 1jalA.22.142 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 22 :LIESLQENE 1jalA 143 :AIQRLQKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24307 # 1dc1A.22.93 read from T0287.t06.many.frag # found chain 1dc1A in training set T0287 22 :LIESLQENE 1dc1A 94 :SINNLIENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24308 # 2d28C.23.10 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)N29 (2d28C)R17 because G (3-10) conformation "forbidden" or filtered. T0287 23 :IESLQE 2d28C 11 :VEALLE T0287 30 :EL 2d28C 18 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24310 # 1uw4B.23.24 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 23 :IESLQENEL 1uw4B 792 :LRQMRKLPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24311 # 1on2A.23.42 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)E30 (1on2A)E50 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1on2A 43 :VQKLDKD T0287 31 :L 1on2A 51 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=24313 # 1i58A.23.108 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 23 :IESLQENEL 1i58A 460 :IRKAIEKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24314 # 1yj7A.23.50 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 23 :IESLQENEL 1yj7A 70 :ITILNNNGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24315 # 1l0bA.23.77 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQE 1l0bA 1666 :IKSIQE T0287 30 :EL 1l0bA 1673 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24317 # 1w8iA.23.63 read from T0287.t06.many.frag # found chain 1w8iA in template set T0287 23 :IESLQENEL 1w8iA 64 :LEGFVESGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24318 # 1r71A.23.27 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 23 :IESLQENEL 1r71A 144 :IENLQRNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24319 # 1sd4A.23.30 read from T0287.t06.many.frag # found chain 1sd4A in template set T0287 23 :IESLQENEL 1sd4A 31 :VVEIQKYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24320 # 1nuuA.23.223 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1nuuA 224 :ITYIKDH T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24322 # 1pu6A.23.51 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1pu6A 52 :LENLKNA T0287 31 :L 1pu6A 60 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=24324 # 1oi7A.23.261 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 1oi7A 262 :LRAFAEA T0287 31 :L 1oi7A 270 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=24326 # 2ahrA.23.175 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 23 :IESLQENEL 2ahrA 173 :IEALAKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24327 # 1uj8A.23.43 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 23 :IESLQENEL 1uj8A 44 :HQWICDLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=24328 # 1ctf.23.22 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 23 :IESLQENEL 1ctf 69 :IKAVRGATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24329 # 2bwbA.23.10 read from T0287.t06.many.frag # found chain 2bwbA in template set T0287 23 :IESLQENEL 2bwbA 336 :LRQLNDMGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24330 # 1r7jA.23.40 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 23 :IESLQENEL 1r7jA 41 :IKMLMDLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24331 # 2cz1A.23.25 read from T0287.t06.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)E30 (2cz1A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2cz1A 26 :FRALDGK T0287 31 :L 2cz1A 34 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24333 # 1sflA.23.117 read from T0287.t06.many.frag # found chain 1sflA in template set T0287 23 :IESLQENEL 1sflA 118 :ITHLQQYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24334 # 1ci4A.23.59 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 23 :IESLQENEL 1ci4A 60 :REWLKDTCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24335 # 1jalA.23.143 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 23 :IESLQENEL 1jalA 144 :IQRLQKRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24336 # 2fnuA.23.301 read from T0287.t06.many.frag # found chain 2fnuA in template set Warning: unaligning (T0287)E30 (2fnuA)G309 because T (delta_L) conformation "forbidden" or filtered. T0287 23 :IESLQEN 2fnuA 302 :LESLHKR T0287 31 :L 2fnuA 310 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=24338 # 1aa7A.23.24 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 23 :IESLQENEL 1aa7A 25 :AQRLEDVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24339 # 2hddA.23.18 read from T0287.t06.many.frag # found chain 2hddA in template set T0287 23 :IESLQENEL 2hddA 17 :KREFNENRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24340 # 2tpt.23.7 read from T0287.t06.many.frag # found chain 2tpt in template set T0287 23 :IESLQENEL 2tpt 8 :IRKKRDGHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24341 # 1xg8A.23.69 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 23 :IESLQENEL 1xg8A 61 :IERIEQDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24342 # 2ak3A.23.55 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 23 :IESLQENEL 2ak3A 55 :KTFIDQGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24343 # 1h5uA.23.741 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 23 :IESLQENEL 1h5uA 742 :IEQLSSGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24344 # 1k3xA.23.139 read from T0287.t06.many.frag # found chain 1k3xA in training set T0287 23 :IESLQENEL 1k3xA 140 :KERLLSPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24345 # 1jkeA.23.45 read from T0287.t06.many.frag # found chain 1jkeA in training set T0287 23 :IESLQENEL 1jkeA 46 :CERVLGYRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24346 # 2d28C.24.11 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2d28C 12 :EALLER T0287 31 :LL 2d28C 19 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24348 # 1i58A.24.109 read from T0287.t06.many.frag # found chain 1i58A in training set T0287 24 :ESLQENELL 1i58A 461 :RKAIEKGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24349 # 1uw4B.24.25 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 24 :ESLQENELL 1uw4B 793 :RQMRKLPWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24350 # 1yj7A.24.51 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)N29 (1yj7A)N76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 24 :ESLQE 1yj7A 71 :TILNN T0287 30 :EL 1yj7A 77 :GF Number of specific fragments extracted= 2 number of extra gaps= 2 total=24352 # 1on2A.24.43 read from T0287.t06.many.frag # found chain 1on2A in training set T0287 24 :ESLQENELL 1on2A 44 :QKLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24353 # 1l0bA.24.78 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 1l0bA 1667 :KSIQE T0287 30 :ELL 1l0bA 1673 :KLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24355 # 1oi7A.24.262 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 24 :ESLQENELL 1oi7A 263 :RAFAEAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24356 # 1pu6A.24.52 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1pu6A 53 :ENLKNA T0287 31 :LL 1pu6A 60 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24358 # 1nuuA.24.224 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1nuuA 225 :TYIKDH T0287 31 :L 1nuuA 232 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=24360 # 2bwbA.24.11 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 2bwbA 337 :RQLNDM T0287 31 :LL 2bwbA 344 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24362 # 1r71A.24.28 read from T0287.t06.many.frag # found chain 1r71A in template set T0287 24 :ESLQENELL 1r71A 145 :ENLQRNELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24363 # 1whsA.24.196 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1whsA 190 :EFWWNH T0287 31 :LL 1whsA 197 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24365 # 1uj8A.24.44 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 24 :ESLQENELL 1uj8A 45 :QWICDLEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24366 # 1w8iA.24.64 read from T0287.t06.many.frag # found chain 1w8iA in template set Warning: unaligning (T0287)E30 (1w8iA)G71 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1w8iA 65 :EGFVES T0287 31 :LL 1w8iA 72 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24368 # 1r7jA.24.41 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 24 :ESLQENELL 1r7jA 42 :KMLMDLEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=24369 # 1u20A.24.186 read from T0287.t06.many.frag # found chain 1u20A in template set T0287 24 :ESLQENELL 1u20A 187 :YALRSLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24370 # 1ctf.24.23 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 24 :ESLQENELL 1ctf 70 :KAVRGATGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24371 # 1sd4A.24.31 read from T0287.t06.many.frag # found chain 1sd4A in template set Warning: unaligning (T0287)L32 (1sd4A)V40 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQENEL 1sd4A 32 :VEIQKYKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24372 # 1jalA.24.144 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 24 :ESLQENELL 1jalA 145 :QRLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24373 # 2ak3A.24.56 read from T0287.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQE 2ak3A 56 :TFIDQ T0287 30 :ELL 2ak3A 62 :KLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24375 # 2cz1A.24.26 read from T0287.t06.many.frag # found chain 2cz1A in template set T0287 24 :ESLQENELL 2cz1A 27 :RALDGKGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24376 # 2fnuA.24.302 read from T0287.t06.many.frag # found chain 2fnuA in template set T0287 24 :ESLQENELL 2fnuA 303 :ESLHKRGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24377 # 1ig0A.24.106 read from T0287.t06.many.frag # found chain 1ig0A in training set Warning: unaligning (T0287)E30 (1ig0A)K113 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1ig0A 107 :KYYRKN T0287 31 :LL 1ig0A 114 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24379 # 2tpt.24.8 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (2tpt)H15 because P (beta_P) conformation "forbidden" or filtered. T0287 24 :ESLQE 2tpt 9 :RKKRD T0287 31 :LL 2tpt 16 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24381 # 1fiuA.24.13 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQEN 1fiuA 14 :KKLLDG T0287 31 :LL 1fiuA 21 :IL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24383 # 2ahrA.24.176 read from T0287.t06.many.frag # found chain 2ahrA in template set T0287 24 :ESLQENELL 2ahrA 174 :EALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24384 # 1h5uA.24.742 read from T0287.t06.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 24 :ESLQE 1h5uA 743 :EQLSS T0287 30 :ELL 1h5uA 749 :FFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24386 # 1s7zA.24.20 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)N29 (1s7zA)D25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQE 1s7zA 20 :ENIRY T0287 31 :LL 1s7zA 27 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24388 # 1qvzA.24.85 read from T0287.t06.many.frag # found chain 1qvzA in template set T0287 24 :ESLQENELL 1qvzA 86 :AKIKTPKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24389 # 1ci4A.24.60 read from T0287.t06.many.frag # found chain 1ci4A in template set Warning: unaligning (T0287)L31 (1ci4A)G68 because L (left) conformation "forbidden" or filtered. T0287 24 :ESLQENE 1ci4A 61 :EWLKDTC T0287 32 :L 1ci4A 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=24391 # 2d28C.25.12 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 2d28C 13 :ALLER T0287 31 :LLN 2d28C 19 :RLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24393 # 1i58A.25.110 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENEL 1i58A 462 :KAIEKGL T0287 33 :N 1i58A 470 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=24395 # 1whsA.25.197 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1whsA 191 :FWWNH T0287 31 :LLN 1whsA 197 :IVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24397 # 1nuuA.25.225 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQENEL 1nuuA 226 :YIKDHGL T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=24399 # 1oi7A.25.263 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 1oi7A 264 :AFAEA T0287 31 :LLN 1oi7A 270 :IPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24401 # 1pu6A.25.53 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQE 1pu6A 54 :NLKN T0287 31 :LLN 1pu6A 60 :ILE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24403 # 1yj7A.25.52 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)N29 (1yj7A)N76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. T0287 25 :SLQE 1yj7A 72 :ILNN T0287 31 :L 1yj7A 78 :F T0287 33 :N 1yj7A 80 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=24406 # 1u20A.25.187 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1u20A 188 :ALRSL T0287 31 :LLN 1u20A 194 :LLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24408 # 2bwbA.25.12 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 2bwbA 338 :QLNDM T0287 31 :LLN 2bwbA 344 :FFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24410 # 1l0bA.25.79 read from T0287.t06.many.frag # found chain 1l0bA in template set T0287 25 :SLQENELLN 1l0bA 1668 :SIQERKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24411 # 1uw4B.25.26 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 25 :SLQENELLN 1uw4B 794 :QMRKLPWQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24412 # 1jalA.25.145 read from T0287.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQENELL 1jalA 146 :RLQKRAKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=24413 # 2ahrA.25.177 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 T0287 25 :SLQENELL 2ahrA 175 :ALAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24414 # 1fzcA.25.18 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 25 :SLQENELLN 1fzcA 129 :KVQHIQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24415 # 1on2A.25.44 read from T0287.t06.many.frag # found chain 1on2A in training set Warning: unaligning (T0287)N33 (1on2A)I53 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQENELL 1on2A 45 :KLDKDEYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24416 # 2ak3A.25.57 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 25 :SLQENELLN 2ak3A 57 :FIDQGKLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24417 # 1s7zA.25.21 read from T0287.t06.many.frag # found chain 1s7zA in template set T0287 25 :SLQENELLN 1s7zA 21 :NIRYDDIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24418 # 1hynP.25.137 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 25 :SLQENELLN 1hynP 138 :RFIFEDQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24419 # 1uj8A.25.45 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 25 :SLQENELLN 1uj8A 46 :WICDLEDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24420 # 1fiuA.25.14 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)N29 (1fiuA)G19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 25 :SLQE 1fiuA 15 :KLLD T0287 31 :LL 1fiuA 21 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=24422 # 1h5uA.25.743 read from T0287.t06.many.frag # found chain 1h5uA in training set Warning: unaligning (T0287)N29 (1h5uA)G748 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 1h5uA 744 :QLSS T0287 30 :ELLN 1h5uA 749 :FFSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24424 # 2ao9A.25.33 read from T0287.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 25 :SLQENEL 2ao9A 34 :LLVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24425 # 1ctf.25.24 read from T0287.t06.many.frag # found chain 1ctf in training set T0287 25 :SLQENELLN 1ctf 71 :AVRGATGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24426 # 1vjrA.25.68 read from T0287.t06.many.frag # found chain 1vjrA in template set Warning: unaligning (T0287)E30 (1vjrA)G62 because L (left) conformation "forbidden" or filtered. T0287 25 :SLQEN 1vjrA 57 :KLRNM T0287 31 :LLN 1vjrA 63 :VDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24428 # 1go3F.25.39 read from T0287.t06.many.frag # found chain 1go3F in training set T0287 25 :SLQENELLN 1go3F 40 :YLQKFAKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24429 # 2hddA.25.20 read from T0287.t06.many.frag # found chain 2hddA in template set Warning: unaligning (T0287)N33 (2hddA)T27 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQENELL 2hddA 19 :EFNENRYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24430 # 2tpt.25.9 read from T0287.t06.many.frag # found chain 2tpt in template set Warning: unaligning (T0287)N29 (2tpt)G14 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQE 2tpt 10 :KKRD T0287 30 :ELLN 2tpt 15 :HALS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24432 # 2cz1A.25.27 read from T0287.t06.many.frag # found chain 2cz1A in template set Warning: unaligning (T0287)N33 (2cz1A)P36 because P (beta_P) conformation "forbidden" or filtered. T0287 25 :SLQENELL 2cz1A 28 :ALDGKGLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24433 # 1cy5A.25.27 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 25 :SLQEN 1cy5A 28 :HMISD T0287 31 :LLN 1cy5A 34 :FLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24435 # 2b8nA.25.227 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)N29 (2b8nA)Y220 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2b8nA)T224 because E (beta_S) conformation "forbidden" or filtered. T0287 25 :SLQE 2b8nA 216 :VLEK T0287 30 :ELL 2b8nA 221 :GIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=24437 # 1whsA.26.198 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 26 :LQE 1whsA 192 :WWN T0287 31 :LLNT 1whsA 197 :IVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24439 # 1i58A.26.111 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQENEL 1i58A 463 :AIEKGL T0287 33 :NT 1i58A 470 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24441 # 2d28C.26.13 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)N29 (2d28C)R17 because G (3-10) conformation "forbidden" or filtered. T0287 26 :LQE 2d28C 14 :LLE T0287 30 :ELLNT 2d28C 18 :RRLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24443 # 1u20A.26.188 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1u20A 189 :LRSL T0287 31 :LLNT 1u20A 194 :LLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24445 # 1pu6A.26.54 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 26 :LQE 1pu6A 55 :LKN T0287 31 :LL 1pu6A 60 :IL T0287 34 :T 1pu6A 63 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=24448 # 1hynP.26.138 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 26 :LQENELLNT 1hynP 139 :FIFEDQIRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24449 # 1nuuA.26.226 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)N29 (1nuuA)H230 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 26 :LQE 1nuuA 227 :IKD T0287 31 :L 1nuuA 232 :L T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=24452 # 1fiuA.26.15 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 1fiuA 16 :LLDG T0287 31 :LLNT 1fiuA 21 :ILAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24454 # 1cy5A.26.28 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1cy5A 29 :MISD T0287 31 :LLNT 1cy5A 34 :FLTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24456 # 1l0bA.26.80 read from T0287.t06.many.frag # found chain 1l0bA in template set T0287 26 :LQENELLNT 1l0bA 1669 :IQERKLLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24457 # 2ahrA.26.178 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 26 :LQENELL 2ahrA 176 :LAKAGVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24458 # 1yj7A.26.53 read from T0287.t06.many.frag # found chain 1yj7A in template set Warning: unaligning (T0287)E30 (1yj7A)G77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1yj7A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1yj7A)K80 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQEN 1yj7A 73 :LNNN T0287 31 :L 1yj7A 78 :F T0287 34 :T 1yj7A 81 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=24461 # 1oi7A.26.264 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 26 :LQENELLNT 1oi7A 265 :FAEAGIPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24462 # 1fzcA.26.19 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 26 :LQENELLNT 1fzcA 130 :VQHIQLLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24463 # 2ak3A.26.58 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 26 :LQENELLNT 2ak3A 58 :IDQGKLIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24464 # 1jalA.26.146 read from T0287.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQENELL 1jalA 147 :LQKRAKG T0287 34 :T 1jalA 155 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=24466 # 1vfgA.26.177 read from T0287.t06.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 1vfgA 178 :AVNL T0287 31 :LLNT 1vfgA 183 :LLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24468 # 2bwbA.26.13 read from T0287.t06.many.frag # found chain 2bwbA in template set Warning: unaligning (T0287)E30 (2bwbA)G343 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 2bwbA 339 :LNDM T0287 31 :LLNT 2bwbA 344 :FFDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24470 # 2etjA.26.211 read from T0287.t06.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. T0287 26 :LQEN 2etjA 200 :FFEK T0287 31 :LLNT 2etjA 205 :LISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24472 # 1uj8A.26.46 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 26 :LQENELLNT 1uj8A 47 :ICDLEDFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24473 # 2ao9A.26.34 read from T0287.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 26 :LQENEL 2ao9A 35 :LVENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24474 # 1s7zA.26.22 read from T0287.t06.many.frag # found chain 1s7zA in template set T0287 26 :LQENELLNT 1s7zA 22 :IRYDDIRDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24475 # 1uw4B.26.27 read from T0287.t06.many.frag # found chain 1uw4B in template set Warning: unaligning (T0287)N29 (1uw4B)L798 because P (beta_P) conformation "forbidden" or filtered. T0287 26 :LQE 1uw4B 795 :MRK T0287 30 :ELLNT 1uw4B 799 :PWQDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24477 # 1jg1A.26.27 read from T0287.t06.many.frag # found chain 1jg1A in training set T0287 26 :LQENELLNT 1jg1A 28 :LKAEGIIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24478 # 2tpt.26.10 read from T0287.t06.many.frag # found chain 2tpt in template set T0287 26 :LQENELLNT 2tpt 11 :KRDGHALSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24479 # 1go3F.26.40 read from T0287.t06.many.frag # found chain 1go3F in training set T0287 26 :LQENELLNT 1go3F 41 :LQKFAKLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24480 # 1gqeA.26.40 read from T0287.t06.many.frag # found chain 1gqeA in template set T0287 26 :LQENELLNT 1gqeA 41 :LEQPDVWNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24481 # 1ctf.26.25 read from T0287.t06.many.frag # found chain 1ctf in training set Warning: unaligning (T0287)L31 (1ctf)G77 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQENE 1ctf 72 :VRGAT T0287 32 :LNT 1ctf 78 :LGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24483 # 2d3dA.26.52 read from T0287.t06.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 26 :LQEN 2d3dA 488 :LEKK T0287 31 :LLNT 2d3dA 493 :VLAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24485 # 1ci4A.26.62 read from T0287.t06.many.frag # found chain 1ci4A in template set T0287 26 :LQENELLNT 1ci4A 63 :LKDTCGANA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24486 # 1whsA.27.199 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1whsA 193 :WNH T0287 31 :LLNTD 1whsA 197 :IVSDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24488 # 1hynP.27.139 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1hynP 140 :IFE T0287 31 :LLNTD 1hynP 144 :QIRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24490 # 1u20A.27.189 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1u20A 190 :RSL T0287 31 :LLNTD 1u20A 194 :LLRED Number of specific fragments extracted= 2 number of extra gaps= 1 total=24492 # 1pu6A.27.55 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1pu6A 56 :KNA T0287 31 :LLNTD 1pu6A 60 :ILEND Number of specific fragments extracted= 2 number of extra gaps= 1 total=24494 # 1i58A.27.112 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)E30 (1i58A)G467 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QEN 1i58A 464 :IEK T0287 31 :L 1i58A 468 :L T0287 33 :NTD 1i58A 470 :DES Number of specific fragments extracted= 3 number of extra gaps= 2 total=24497 # 1cy5A.27.29 read from T0287.t06.many.frag # found chain 1cy5A in training set T0287 27 :QENELLNTD 1cy5A 30 :ISDGFLTIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24498 # 2d28C.27.14 read from T0287.t06.many.frag # found chain 2d28C in template set Warning: unaligning (T0287)E30 (2d28C)R18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d28C)K21 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 2d28C 15 :LER T0287 31 :LL 2d28C 19 :RL T0287 34 :TD 2d28C 22 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=24501 # 1u3eM.27.100 read from T0287.t06.many.frag # found chain 1u3eM in template set T0287 27 :QENELLNTD 1u3eM 101 :MSRGTLNVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24502 # 1nuuA.27.227 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)E30 (1nuuA)G231 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L32 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 because last residue in template chain is (1nuuA)K235 T0287 27 :QEN 1nuuA 228 :KDH T0287 31 :L 1nuuA 232 :L T0287 33 :N 1nuuA 234 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=24505 # 2etjA.27.212 read from T0287.t06.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2etjA)S207 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 2etjA 201 :FEK T0287 31 :LL 2etjA 205 :LI T0287 34 :TD 2etjA 208 :EN Number of specific fragments extracted= 3 number of extra gaps= 2 total=24508 # 1fzcA.27.20 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 27 :QENELLNTD 1fzcA 131 :QHIQLLQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24509 # 1fiuA.27.16 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 27 :QENELL 1fiuA 17 :LDGNIL T0287 34 :TD 1fiuA 24 :TN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24511 # 2d3dA.27.53 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 27 :QENELLNTD 2d3dA 489 :EKKGVLALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24512 # 1kicA.27.102 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 27 :QENELLNTD 1kicA 91 :DDMPILNIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24513 # 2ahrA.27.179 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 T0287 27 :QENELL 2ahrA 177 :AKAGVK T0287 35 :D 2ahrA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=24515 # 1l0bA.27.81 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)Q27 (1l0bA)Q1670 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N29 (1l0bA)R1672 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :E 1l0bA 1671 :E T0287 30 :ELLNTD 1l0bA 1673 :KLLSVH Number of specific fragments extracted= 2 number of extra gaps= 2 total=24517 # 2ak3A.27.59 read from T0287.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)E30 (2ak3A)K62 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QEN 2ak3A 59 :DQG T0287 31 :LLNTD 2ak3A 63 :LIPDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24519 # 1vfgA.27.178 read from T0287.t06.many.frag # found chain 1vfgA in template set T0287 27 :QENELLNTD 1vfgA 179 :VNLGLLKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24520 # 1oi7A.27.265 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E30 (1oi7A)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1oi7A 266 :AEA T0287 31 :LLNTD 1oi7A 270 :IPVAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24522 # 1qqfA.27.22 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 27 :QENELL 1qqfA 1032 :EQWEKF T0287 35 :D 1qqfA 1040 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=24524 # 1utg.27.42 read from T0287.t06.many.frag # found chain 1utg in training set Warning: unaligning (T0287)N33 (1utg)P49 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QENELL 1utg 43 :KVLDSL T0287 34 :TD 1utg 50 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24526 # 1uj8A.27.47 read from T0287.t06.many.frag # found chain 1uj8A in training set Warning: unaligning (T0287)N29 (1uj8A)L50 because P (beta_P) conformation "forbidden" or filtered. T0287 27 :QE 1uj8A 48 :CD T0287 30 :ELLNTD 1uj8A 51 :EDFDDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24528 # 1qvzA.27.88 read from T0287.t06.many.frag # found chain 1qvzA in template set T0287 27 :QENELLNTD 1qvzA 89 :KTPKEVNAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24529 # 1jalA.27.147 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 27 :QENELLNTD 1jalA 148 :QKRAKGGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24530 # 1s7zA.27.23 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 27 :QEN 1s7zA 23 :RYD T0287 31 :LLNTD 1s7zA 27 :IRDTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24532 # 1jg1A.27.28 read from T0287.t06.many.frag # found chain 1jg1A in training set Warning: unaligning (T0287)E30 (1jg1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0287 27 :QEN 1jg1A 29 :KAE T0287 31 :LLNTD 1jg1A 33 :IIRSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24534 # 1m40A.27.168 read from T0287.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 27 :QENELLN 1m40A 194 :LTGELLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=24535 # 2ao9A.27.35 read from T0287.t06.many.frag # found chain 2ao9A in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (2ao9A)E42 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (2ao9A)E42 T0287 27 :QENEL 2ao9A 36 :VENEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24536 # 1gqeA.27.41 read from T0287.t06.many.frag # found chain 1gqeA in template set T0287 27 :QENELLNTD 1gqeA 42 :EQPDVWNEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24537 # 1k3yA.27.105 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 T0287 27 :QENELLNT 1k3yA 107 :LLLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=24538 # 1whsA.28.200 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)N29 (1whsA)H195 because G (3-10) conformation "forbidden" or filtered. T0287 28 :E 1whsA 194 :N T0287 30 :ELLNTDE 1whsA 196 :GIVSDDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24540 # 1u20A.28.190 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1u20A 191 :SL T0287 31 :LLNTDE 1u20A 194 :LLREDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24542 # 1hynP.28.140 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 28 :ENELLNTDE 1hynP 141 :FEDQIRPQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24543 # 1pu6A.28.56 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (1pu6A)D64 because E (beta_S) conformation "forbidden" or filtered. T0287 28 :EN 1pu6A 57 :NA T0287 31 :LL 1pu6A 60 :IL T0287 34 :T 1pu6A 63 :N T0287 36 :E 1pu6A 65 :D Number of specific fragments extracted= 4 number of extra gaps= 3 total=24547 # 1u3eM.28.101 read from T0287.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1u3eM 102 :SR T0287 31 :LLNTDE 1u3eM 105 :TLNVSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24549 # 2d3dA.28.54 read from T0287.t06.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 2d3dA 490 :KK T0287 31 :LLNTDE 2d3dA 493 :VLALGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24551 # 1i58A.28.113 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)L32 (1i58A)I469 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :ENEL 1i58A 465 :EKGL T0287 33 :NTDE 1i58A 470 :DESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24553 # 1k3yA.28.106 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 28 :ENELLNT 1k3yA 108 :LLPVCPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=24554 # 1cy5A.28.30 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1cy5A 31 :SD T0287 31 :LLNTDE 1cy5A 34 :FLTISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24556 # 1kicA.28.103 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 28 :ENELLNTDE 1kicA 92 :DMPILNIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24557 # 1qqfA.28.23 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 28 :ENELL 1qqfA 1033 :QWEKF T0287 35 :DE 1qqfA 1040 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24559 # 2etjA.28.213 read from T0287.t06.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2etjA)S207 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :EN 2etjA 202 :EK T0287 31 :LL 2etjA 205 :LI T0287 34 :TDE 2etjA 208 :ENR Number of specific fragments extracted= 3 number of extra gaps= 2 total=24562 # 1fzcA.28.21 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 28 :ENELLNTDE 1fzcA 132 :HIQLLQKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24563 # 2ahrA.28.180 read from T0287.t06.many.frag # found chain 2ahrA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (2ahrA)G184 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (2ahrA)G184 Warning: unaligning (T0287)E36 (2ahrA)P186 because P (beta_P) conformation "forbidden" or filtered. T0287 28 :ENELL 2ahrA 178 :KAGVK T0287 35 :D 2ahrA 185 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=24565 # 1rr7A.28.85 read from T0287.t06.many.frag # found chain 1rr7A in template set Warning: unaligning (T0287)T34 (1rr7A)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :ENELLN 1rr7A 86 :IWNDFN T0287 35 :DE 1rr7A 93 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24567 # 1cr1A.28.88 read from T0287.t06.many.frag # found chain 1cr1A in template set Warning: unaligning (T0287)E28 (1cr1A)R359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1cr1A)R361 because N (gamma') conformation "forbidden" or filtered. T0287 29 :N 1cr1A 360 :V T0287 31 :LLNTDE 1cr1A 362 :LRQSDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=24569 # 1uw4B.28.29 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 28 :ENELLNTDE 1uw4B 797 :KLPWQDQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24570 # 1utg.28.43 read from T0287.t06.many.frag # found chain 1utg in training set T0287 28 :ENELLNTDE 1utg 44 :VLDSLPQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24571 # 1m40A.28.169 read from T0287.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 28 :ENELLN 1m40A 195 :TGELLT T0287 36 :E 1m40A 203 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=24573 # 1vfgA.28.179 read from T0287.t06.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :EN 1vfgA 180 :NL T0287 31 :LLNTDE 1vfgA 183 :LLKEAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24575 # 1gqeA.28.42 read from T0287.t06.many.frag # found chain 1gqeA in template set T0287 28 :ENELLNTDE 1gqeA 43 :QPDVWNEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24576 # 2ak3A.28.60 read from T0287.t06.many.frag # found chain 2ak3A in template set Warning: unaligning (T0287)N29 (2ak3A)G61 because L (left) conformation "forbidden" or filtered. T0287 28 :E 2ak3A 60 :Q T0287 30 :ELLNTDE 2ak3A 62 :KLIPDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24578 # 2cwyA.28.25 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 28 :ENELLNT 2cwyA 26 :PYWLKAT T0287 36 :E 2cwyA 34 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=24580 # 1fiuA.28.17 read from T0287.t06.many.frag # found chain 1fiuA in training set Warning: unaligning (T0287)E30 (1fiuA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1fiuA)A23 because Y (epsilon') conformation "forbidden" or filtered. T0287 28 :EN 1fiuA 18 :DG T0287 31 :LL 1fiuA 21 :IL T0287 34 :TDE 1fiuA 24 :TNN Number of specific fragments extracted= 3 number of extra gaps= 2 total=24583 # 1jalA.28.148 read from T0287.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 28 :ENELL 1jalA 149 :KRAKG T0287 34 :TDE 1jalA 155 :DKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24585 # 1x2iA.28.17 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 28 :ENELLNTDE 1x2iA 15 :GLPHVSATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24586 # 1s7zA.28.24 read from T0287.t06.many.frag # found chain 1s7zA in template set Warning: unaligning (T0287)E30 (1s7zA)D26 because L (left) conformation "forbidden" or filtered. T0287 28 :EN 1s7zA 24 :YD T0287 31 :LLNTDE 1s7zA 27 :IRDTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24588 # 1uj8A.28.48 read from T0287.t06.many.frag # found chain 1uj8A in training set T0287 28 :ENELLNTDE 1uj8A 49 :DLEDFDDDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24589 # 2d28C.28.15 read from T0287.t06.many.frag # found chain 2d28C in template set T0287 28 :ENELLNTDE 2d28C 16 :ERRRLKDTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24590 # 1ix9A.28.58 read from T0287.t06.many.frag # found chain 1ix9A in training set Warning: unaligning (T0287)E28 because of BadResidue code BAD_PEPTIDE at template residue (1ix9A)K59 T0287 29 :NELLNTDE 1ix9A 60 :LDQLPADK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24591 # 1whsA.29.201 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1whsA 195 :H T0287 31 :LLNTDEK 1whsA 197 :IVSDDTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24593 # 1hynP.29.141 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1hynP 142 :E T0287 31 :LLNTDEK 1hynP 144 :QIRPQDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24595 # 1pu6A.29.57 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N29 (1pu6A)A58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEK 1pu6A 63 :NDDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=24597 # 1u20A.29.191 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u20A 192 :L T0287 31 :LLNTDEK 1u20A 194 :LLREDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24599 # 1k3yA.29.107 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 29 :NELLNT 1k3yA 109 :LPVCPP T0287 37 :K 1k3yA 117 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=24601 # 1u3eM.29.102 read from T0287.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 29 :N 1u3eM 103 :R T0287 31 :LLNTDEK 1u3eM 105 :TLNVSKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24603 # 2d3dA.29.55 read from T0287.t06.many.frag # found chain 2d3dA in template set Warning: unaligning (T0287)E30 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 2d3dA 491 :K T0287 31 :LL 2d3dA 493 :VL T0287 34 :TDEK 2d3dA 496 :LGAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=24606 # 1cr1A.29.89 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 29 :NELLNTDEK 1cr1A 360 :VRLRQSDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24607 # 2cwyA.29.26 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 29 :NELLNT 2cwyA 27 :YWLKAT T0287 36 :EK 2cwyA 34 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24609 # 1kicA.29.104 read from T0287.t06.many.frag # found chain 1kicA in training set Warning: unaligning (T0287)N29 (1kicA)M93 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELLNTDEK 1kicA 94 :PILNIPEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24610 # 1cy5A.29.31 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1cy5A)T36 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1cy5A 32 :D T0287 31 :LL 1cy5A 34 :FL T0287 34 :TDEK 1cy5A 37 :ISEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=24613 # 1vflA.29.330 read from T0287.t06.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)N29 (1vflA)S329 because G (3-10) conformation "forbidden" or filtered. T0287 30 :ELLNTDEK 1vflA 330 :SFLPEDEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24614 # 1qqfA.29.24 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 29 :NELL 1qqfA 1034 :WEKF T0287 35 :DEK 1qqfA 1040 :EKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24616 # 1ix9A.29.59 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 29 :NELLNTDEK 1ix9A 60 :LDQLPADKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24617 # 2etjA.29.214 read from T0287.t06.many.frag # found chain 2etjA in template set T0287 29 :NELLNTDEK 2etjA 203 :KGLISENRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24618 # 1i58A.29.114 read from T0287.t06.many.frag # found chain 1i58A in training set Warning: unaligning (T0287)N29 (1i58A)K466 because G (3-10) conformation "forbidden" or filtered. T0287 30 :ELLNTDEK 1i58A 467 :GLIDESKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24619 # 1yrbA.29.180 read from T0287.t06.many.frag # found chain 1yrbA in template set T0287 29 :NELLNTDEK 1yrbA 167 :VDLLSEEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24620 # 1d2tA.29.52 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 29 :NELLNTD 1d2tA 53 :RLLRNTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24621 # 1uptB.29.32 read from T0287.t06.many.frag # found chain 1uptB in training set T0287 29 :NELLNTDEK 1uptB 2201 :VLKFPDDQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24622 # 1uw4B.29.30 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 29 :NELLNTDEK 1uw4B 798 :LPWQDQEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24623 # 1f74A.29.50 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 29 :NELLNTDEK 1f74A 51 :NFMLSTEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24624 # 1rr7A.29.86 read from T0287.t06.many.frag # found chain 1rr7A in template set Warning: unaligning (T0287)T34 (1rr7A)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :NELLN 1rr7A 87 :WNDFN T0287 35 :DEK 1rr7A 93 :RNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24626 # 1m40A.29.170 read from T0287.t06.many.frag # found chain 1m40A in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE in next template residue (1m40A)A202 Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE at template residue (1m40A)A202 T0287 29 :NELLN 1m40A 196 :GELLT T0287 36 :EK 1m40A 203 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24628 # 1fzcA.29.22 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 29 :NELLNTDEK 1fzcA 133 :IQLLQKNVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24629 # 1x2iA.29.18 read from T0287.t06.many.frag # found chain 1x2iA in template set Warning: unaligning (T0287)N29 (1x2iA)L16 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELLNTDEK 1x2iA 17 :PHVSATLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24630 # 1u61A.29.64 read from T0287.t06.many.frag # found chain 1u61A in template set Warning: unaligning (T0287)E30 (1u61A)A63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1u61A)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 29 :N 1u61A 62 :T T0287 31 :LL 1u61A 64 :FL T0287 34 :TDEK 1u61A 67 :EEEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=24633 # 1y0nA.29.6 read from T0287.t06.many.frag # found chain 1y0nA in template set T0287 29 :NELLNTDEK 1y0nA 5 :HDLLEADTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24634 # 1vfgA.29.180 read from T0287.t06.many.frag # found chain 1vfgA in template set Warning: unaligning (T0287)N29 (1vfgA)L181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)E30 (1vfgA)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEK 1vfgA 183 :LLKEAPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24635 # 1gqeA.29.43 read from T0287.t06.many.frag # found chain 1gqeA in template set T0287 29 :NELLNTDEK 1gqeA 44 :PDVWNEPER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24636 # 1jalA.29.149 read from T0287.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 29 :NELL 1jalA 150 :RAKG T0287 34 :TDEK 1jalA 155 :DKEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24638 # 1hynP.30.142 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)E30 (1hynP)D143 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1hynP 144 :QIRPQDRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24639 # 2cwyA.30.27 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D35 (2cwyA)G33 because S (epsilon) conformation "forbidden" or filtered. T0287 30 :ELL 2cwyA 28 :WLK T0287 34 :T 2cwyA 32 :T T0287 36 :EKK 2cwyA 34 :EER Number of specific fragments extracted= 3 number of extra gaps= 2 total=24642 # 1k3yA.30.108 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 30 :ELLNT 1k3yA 110 :PVCPP T0287 37 :KK 1k3yA 117 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24644 # 1whsA.30.202 read from T0287.t06.many.frag # found chain 1whsA in template set Warning: unaligning (T0287)E30 (1whsA)G196 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1whsA 197 :IVSDDTYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24645 # 1u3eM.30.103 read from T0287.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)E30 (1u3eM)G104 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1u3eM 105 :TLNVSKAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24646 # 1u20A.30.192 read from T0287.t06.many.frag # found chain 1u20A in template set Warning: unaligning (T0287)E30 (1u20A)K193 because L (left) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1u20A 194 :LLREDQIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24647 # 1pu6A.30.58 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)E30 (1pu6A)F59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEKK 1pu6A 63 :NDDEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=24649 # 1cr1A.30.90 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 30 :ELLNTDEKK 1cr1A 361 :RLRQSDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24650 # 2d3dA.30.56 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 30 :ELLNTDEKK 2d3dA 492 :GVLALGARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24651 # 1vflA.30.331 read from T0287.t06.many.frag # found chain 1vflA in template set T0287 30 :ELLNTDEKK 1vflA 330 :SFLPEDEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24652 # 1qqfA.30.25 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 30 :ELL 1qqfA 1035 :EKF T0287 35 :DEKK 1qqfA 1040 :EKRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24654 # 1yrbA.30.181 read from T0287.t06.many.frag # found chain 1yrbA in template set T0287 30 :ELLNTDEKK 1yrbA 168 :DLLSEEEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24655 # 1ix9A.30.60 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 30 :ELLNTDEKK 1ix9A 61 :DQLPADKKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24656 # 1kicA.30.105 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 30 :ELLNTDEKK 1kicA 94 :PILNIPENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24657 # 1uptB.30.33 read from T0287.t06.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)L31 (1uptB)K2203 because L (left) conformation "forbidden" or filtered. T0287 30 :E 1uptB 2202 :L T0287 32 :LNTDEKK 1uptB 2204 :FPDDQTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24659 # 1d2tA.30.53 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 30 :ELLNTD 1d2tA 54 :LLRNTE T0287 38 :K 1d2tA 62 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=24661 # 1w33A.30.116 read from T0287.t06.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N33 (1w33A)S189 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1w33A 186 :ENL T0287 34 :TDEKK 1w33A 190 :QEESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24663 # 1f74A.30.51 read from T0287.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N33 (1f74A)S55 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1f74A 52 :FML T0287 34 :TDEKK 1f74A 56 :TEEKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24665 # 1e9rA.30.195 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 30 :ELL 1e9rA 266 :LFA T0287 34 :TDEKK 1e9rA 270 :SNEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24667 # 1cy5A.30.32 read from T0287.t06.many.frag # found chain 1cy5A in training set Warning: unaligning (T0287)E30 (1cy5A)G33 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LLNTDEKK 1cy5A 34 :FLTISEEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24668 # 1uw4B.30.31 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 30 :ELLNTDEKK 1uw4B 799 :PWQDQEVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24669 # 1jalA.30.150 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 30 :ELLNTDEKK 1jalA 151 :AKGGDKEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24670 # 1g73A.30.66 read from T0287.t06.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)N33 (1g73A)N70 because E (beta_S) conformation "forbidden" or filtered. T0287 30 :ELL 1g73A 67 :GKM T0287 34 :TDEKK 1g73A 71 :SEEED Number of specific fragments extracted= 2 number of extra gaps= 1 total=24672 # 1u7kA.30.60 read from T0287.t06.many.frag # found chain 1u7kA in template set Warning: unaligning (T0287)N33 (1u7kA)T64 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELL 1u7kA 61 :TLL T0287 34 :TDEKK 1u7kA 65 :GEEKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24674 # 1y0nA.30.7 read from T0287.t06.many.frag # found chain 1y0nA in template set T0287 30 :ELLNTDEKK 1y0nA 6 :DLLEADTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24675 # 2etjA.30.215 read from T0287.t06.many.frag # found chain 2etjA in template set Warning: unaligning (T0287)E30 (2etjA)G204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N33 (2etjA)S207 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 2etjA 205 :LI T0287 34 :TDEKK 2etjA 208 :ENRFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=24677 # 1uslA.30.138 read from T0287.t06.many.frag # found chain 1uslA in template set Warning: unaligning (T0287)E30 because of BadResidue code BAD_PEPTIDE in next template residue (1uslA)W132 Warning: unaligning (T0287)L31 because of BadResidue code BAD_PEPTIDE at template residue (1uslA)W132 T0287 32 :LNTDEKK 1uslA 133 :SKAQRHQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24678 # 1u84A.30.39 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 30 :ELLNTDEKK 1u84A 37 :AVYETEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24679 # 2ahmA.30.42 read from T0287.t06.many.frag # found chain 2ahmA in template set Warning: unaligning (T0287)E36 (2ahmA)D49 because P (beta_P) conformation "forbidden" or filtered. T0287 30 :ELLNTD 2ahmA 43 :DILLAK T0287 37 :KK 2ahmA 50 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24681 # 1ydiA.30.185 read from T0287.t06.many.frag # found chain 1ydiA in template set T0287 30 :ELLNTDEKK 1ydiA 181 :ELTHQEHRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24682 # 2cwyA.31.28 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 31 :LLNTDEKKK 2cwyA 29 :LKATGEERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24683 # 1hynP.31.143 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 31 :LLNTDEKKK 1hynP 144 :QIRPQDREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24684 # 1k3yA.31.109 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 31 :LLNT 1k3yA 111 :VCPP T0287 37 :KKK 1k3yA 117 :KDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24686 # 2d3dA.31.57 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 31 :LLNTDEKKK 2d3dA 493 :VLALGARRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24687 # 1cr1A.31.91 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 31 :LLNTDEKKK 1cr1A 362 :LRQSDSLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24688 # 1qqfA.31.26 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 31 :LL 1qqfA 1036 :KF T0287 35 :DEKKK 1qqfA 1040 :EKRQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24690 # 1u3eM.31.104 read from T0287.t06.many.frag # found chain 1u3eM in template set T0287 31 :LLNTDEKKK 1u3eM 105 :TLNVSKAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24691 # 1w33A.31.117 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 31 :LLNTDEKKK 1w33A 187 :NLSQEESKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24692 # 1whsA.31.203 read from T0287.t06.many.frag # found chain 1whsA in template set T0287 31 :LLNTDEKKK 1whsA 197 :IVSDDTYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24693 # 1u20A.31.193 read from T0287.t06.many.frag # found chain 1u20A in template set T0287 31 :LLNTDEKKK 1u20A 194 :LLREDQIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24694 # 1b4fA.31.53 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 31 :LLNTDEKKK 1b4fA 54 :VTLAGHQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24695 # 1vflA.31.332 read from T0287.t06.many.frag # found chain 1vflA in template set T0287 31 :LLNTDEKKK 1vflA 331 :FLPEDEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24696 # 1uptB.31.34 read from T0287.t06.many.frag # found chain 1uptB in training set T0287 31 :LLNTDEKKK 1uptB 2203 :KFPDDQTQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24697 # 1yrbA.31.182 read from T0287.t06.many.frag # found chain 1yrbA in template set Warning: unaligning (T0287)N33 (1yrbA)S171 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LL 1yrbA 169 :LL T0287 34 :TDEKKK 1yrbA 172 :EEEKER Number of specific fragments extracted= 2 number of extra gaps= 1 total=24699 # 1ix9A.31.61 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 31 :LLNTDEKKK 1ix9A 62 :QLPADKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24700 # 1e9rA.31.196 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. T0287 31 :LL 1e9rA 267 :FA T0287 34 :TDEKKK 1e9rA 270 :SNEASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24702 # 1u84A.31.40 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 31 :LLNTDEKKK 1u84A 38 :VYETEDART Number of specific fragments extracted= 1 number of extra gaps= 0 total=24703 # 1d2tA.31.54 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 31 :LLNTD 1d2tA 55 :LRNTE T0287 38 :KK 1d2tA 62 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24705 # 1pu6A.31.59 read from T0287.t06.many.frag # found chain 1pu6A in training set Warning: unaligning (T0287)N33 (1pu6A)E62 because Y (epsilon') conformation "forbidden" or filtered. T0287 31 :LL 1pu6A 60 :IL T0287 34 :TDEKKK 1pu6A 63 :NDDEIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24707 # 1g73A.31.67 read from T0287.t06.many.frag # found chain 1g73A in template set T0287 31 :LLNTDEKKK 1g73A 68 :KMNSEEEDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24708 # 1oi7A.31.269 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 31 :LLNTDEKKK 1oi7A 270 :IPVADTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24709 # 1u7kA.31.61 read from T0287.t06.many.frag # found chain 1u7kA in template set T0287 31 :LLNTDEKKK 1u7kA 62 :LLTGEEKQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24710 # 1f74A.31.52 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 31 :LLNTDEKKK 1f74A 53 :MLSTEEKKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24711 # 1uw4B.31.32 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 31 :LLNTDEKKK 1uw4B 800 :WQDQEVKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24712 # 1vpmA.31.141 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 31 :LLNTDEKKK 1vpmA 130 :EPQTEEEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24713 # 1jalA.31.151 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 31 :LLNTDEKKK 1jalA 152 :KGGDKEAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24714 # 1kicA.31.106 read from T0287.t06.many.frag # found chain 1kicA in training set T0287 31 :LLNTDEKKK 1kicA 95 :ILNIPENVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24715 # 1no4A.31.17 read from T0287.t06.many.frag # found chain 1no4A in template set T0287 31 :LLNTDEKKK 1no4A 19 :ELAQSERTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24716 # 2ahmA.31.43 read from T0287.t06.many.frag # found chain 2ahmA in template set Warning: unaligning (T0287)E36 (2ahmA)D49 because P (beta_P) conformation "forbidden" or filtered. T0287 31 :LLNTD 2ahmA 44 :ILLAK T0287 37 :KKK 2ahmA 50 :TTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24718 # 1x2iA.31.20 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 31 :LLNTDEKKK 1x2iA 18 :HVSATLARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24719 # 2cwyA.32.29 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 32 :LNTDEKKKI 2cwyA 30 :KATGEERRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24720 # 1qqfA.32.27 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 32 :L 1qqfA 1037 :F T0287 35 :DEKKKI 1qqfA 1040 :EKRQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24722 # 1b4fA.32.54 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 32 :LNTDEKKKI 1b4fA 55 :TLAGHQKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24723 # 1cr1A.32.92 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 32 :LNTDEKKKI 1cr1A 363 :RQSDSLKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24724 # 1k3yA.32.110 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 32 :LNT 1k3yA 112 :CPP T0287 37 :KKKI 1k3yA 117 :KDAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24726 # 2d3dA.32.58 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 32 :LNTDEKKKI 2d3dA 494 :LALGARRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24727 # 1w33A.32.118 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 32 :LNTDEKKKI 1w33A 188 :LSQEESKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24728 # 1uptB.32.35 read from T0287.t06.many.frag # found chain 1uptB in training set T0287 32 :LNTDEKKKI 1uptB 2204 :FPDDQTQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24729 # 1u84A.32.41 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 32 :LNTDEKKKI 1u84A 39 :YETEDARTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24730 # 1hynP.32.144 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 32 :LNTDEKKKI 1hynP 145 :IRPQDREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24731 # 1vpmA.32.142 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 32 :LNTDEKKKI 1vpmA 131 :PQTEEEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24732 # 1s2xA.32.46 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 32 :LNTD 1s2xA 40 :KDSN T0287 39 :KI 1s2xA 47 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24734 # 1vflA.32.333 read from T0287.t06.many.frag # found chain 1vflA in template set Warning: unaligning (T0287)N33 (1vflA)P333 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1vflA 332 :L T0287 34 :TDEKKKI 1vflA 334 :EDEKKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24736 # 1jalA.32.152 read from T0287.t06.many.frag # found chain 1jalA in template set T0287 32 :LNTDEKKKI 1jalA 153 :GGDKEAKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24737 # 1d2tA.32.55 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 32 :LNTD 1d2tA 56 :RNTE T0287 38 :KKI 1d2tA 62 :KLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24739 # 1g73A.32.68 read from T0287.t06.many.frag # found chain 1g73A in template set T0287 32 :LNTDEKKKI 1g73A 69 :MNSEEEDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24740 # 2ex0A.32.247 read from T0287.t06.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)N33 (2ex0A)N273 because L (left) conformation "forbidden" or filtered. T0287 32 :L 2ex0A 272 :G T0287 34 :TDEKKKI 2ex0A 274 :TDVREYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24742 # 1oi7A.32.270 read from T0287.t06.many.frag # found chain 1oi7A in training set Warning: unaligning (T0287)E36 (1oi7A)T275 because E (beta_S) conformation "forbidden" or filtered. T0287 32 :LNTD 1oi7A 271 :PVAD T0287 37 :KKKI 1oi7A 276 :IDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24744 # 1u3eM.32.105 read from T0287.t06.many.frag # found chain 1u3eM in template set Warning: unaligning (T0287)N33 (1u3eM)N107 because E (beta_S) conformation "forbidden" or filtered. T0287 32 :L 1u3eM 106 :L T0287 34 :TDEKKKI 1u3eM 108 :VSKAQQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24746 # 1uw4B.32.33 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 32 :LNTDEKKKI 1uw4B 801 :QDQEVKDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24747 # 1ix9A.32.62 read from T0287.t06.many.frag # found chain 1ix9A in training set T0287 32 :LNTDEKKKI 1ix9A 63 :LPADKKTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24748 # 1bo1A.32.251 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 32 :LNTDEKKKI 1bo1A 252 :VGEESKKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24749 # 1e9rA.32.197 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)N33 (1e9rA)G269 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T34 (1e9rA)S270 because Y (epsilon') conformation "forbidden" or filtered. T0287 32 :L 1e9rA 268 :A T0287 35 :DEKKKI 1e9rA 271 :NEASKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24751 # 1yrbA.32.183 read from T0287.t06.many.frag # found chain 1yrbA in template set T0287 32 :LNTDEKKKI 1yrbA 170 :LSEEEKERH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24752 # 1u7kA.32.62 read from T0287.t06.many.frag # found chain 1u7kA in template set T0287 32 :LNTDEKKKI 1u7kA 63 :LTGEEKQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24753 # 1xsvA.32.24 read from T0287.t06.many.frag # found chain 1xsvA in training set T0287 32 :LNTDEKKKI 1xsvA 22 :LLTNKQRNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24754 # 1szqA.32.450 read from T0287.t06.many.frag # found chain 1szqA in template set Warning: unaligning (T0287)N33 (1szqA)P452 because P (beta_P) conformation "forbidden" or filtered. T0287 32 :L 1szqA 451 :F T0287 34 :TDEKKKI 1szqA 453 :TRQQQRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24756 # 1orjA.32.43 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)L32 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)E1045 Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKI 1orjA 1046 :LEKRKEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=24757 # 1u20A.32.194 read from T0287.t06.many.frag # found chain 1u20A in template set T0287 32 :LNTDEKKKI 1u20A 195 :LREDQIQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24758 # 2b0tA.32.111 read from T0287.t06.many.frag # found chain 2b0tA in template set T0287 32 :LNTDEKKKI 2b0tA 112 :ATTDEEKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24759 # 2cwyA.33.30 read from T0287.t06.many.frag # found chain 2cwyA in template set Warning: unaligning (T0287)N33 (2cwyA)A31 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 2cwyA 32 :TGEERRLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24760 # 1b4fA.33.55 read from T0287.t06.many.frag # found chain 1b4fA in template set Warning: unaligning (T0287)N33 (1b4fA)L56 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1b4fA 57 :AGHQKKIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24761 # 1qqfA.33.28 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1qqfA)L1039 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKII 1qqfA 1040 :EKRQEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24762 # 1bo1A.33.252 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 33 :NTDEKKKII 1bo1A 253 :GEESKKNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24763 # 1u84A.33.42 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 33 :NTDEKKKII 1u84A 40 :ETEDARTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24764 # 1vpmA.33.143 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 33 :NTDEKKKII 1vpmA 132 :QTEEEKRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24765 # 1s2xA.33.47 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 33 :NTDE 1s2xA 41 :DSND T0287 39 :KII 1s2xA 47 :DFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24767 # 1w33A.33.119 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 33 :NTDEKKKII 1w33A 189 :SQEESKSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24768 # 2d3dA.33.59 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 33 :NTDEKKKII 2d3dA 495 :ALGARRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24769 # 1cr1A.33.93 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 33 :NTDEKKKII 1cr1A 364 :QSDSLKREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24770 # 1k3yA.33.111 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)D35 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)E116 Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)E116 T0287 33 :NT 1k3yA 113 :PP T0287 37 :KKKII 1k3yA 117 :KDAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24772 # 1uptB.33.36 read from T0287.t06.many.frag # found chain 1uptB in training set Warning: unaligning (T0287)N33 (1uptB)P2205 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1uptB 2206 :DDQTQKIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24773 # 1orjA.33.44 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)E1045 T0287 34 :TDEKKKII 1orjA 1046 :LEKRKEFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24774 # 1x2iA.33.22 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 33 :NTDEKKKII 1x2iA 20 :SATLARRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24775 # 1g73A.33.69 read from T0287.t06.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 33 :N 1g73A 70 :N T0287 35 :DEKKKII 1g73A 72 :EEEDEVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=24777 # 1hynP.33.145 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)N33 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1hynP 147 :PQDREELL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24778 # 1jfmA.33.131 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 33 :NTDEKKKII 1jfmA 132 :ANDESGVIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24779 # 1jalA.33.153 read from T0287.t06.many.frag # found chain 1jalA in template set Warning: unaligning (T0287)N33 (1jalA)G154 because T (delta_L) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1jalA 155 :DKEAKFEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24780 # 1uw4B.33.34 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 33 :NTDEKKKII 1uw4B 802 :DQEVKDYVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24781 # 1szqA.33.451 read from T0287.t06.many.frag # found chain 1szqA in template set T0287 33 :NTDEKKKII 1szqA 452 :PTRQQQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24782 # 1zroA.33.416 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 33 :NTDEKKKII 1zroA 417 :NDLSNRKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24783 # 1y0nA.33.10 read from T0287.t06.many.frag # found chain 1y0nA in template set Warning: unaligning (T0287)N33 (1y0nA)E9 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1y0nA 10 :ADTLNNLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24784 # 2ex0A.33.248 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 33 :NTDEKKKII 2ex0A 273 :NTDVREYYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24785 # 1u7kA.33.63 read from T0287.t06.many.frag # found chain 1u7kA in template set T0287 33 :NTDEKKKII 1u7kA 64 :TGEEKQRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24786 # 1ct5A.33.6 read from T0287.t06.many.frag # found chain 1ct5A in template set Warning: unaligning (T0287)N33 (1ct5A)D8 because P (beta_P) conformation "forbidden" or filtered. T0287 34 :TDEKKKII 1ct5A 9 :EDRKTQLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24787 # 1oi7A.33.271 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 33 :NTDEKKKII 1oi7A 272 :VADTIDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24788 # 1ykhA.33.42 read from T0287.t06.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)N33 because of BadResidue code BAD_PEPTIDE in next template residue (1ykhA)P141 Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKII 1ykhA 142 :DMYERKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24789 # 1vflA.33.334 read from T0287.t06.many.frag # found chain 1vflA in template set T0287 33 :NTDEKKKII 1vflA 333 :PEDEKKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24790 # 1usyA.33.142 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 33 :NTDEKKKII 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24791 # 1d2tA.33.56 read from T0287.t06.many.frag # found chain 1d2tA in template set Warning: unaligning (T0287)E36 because of BadResidue code BAD_PEPTIDE in next template residue (1d2tA)G61 Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE at template residue (1d2tA)G61 T0287 33 :NTD 1d2tA 57 :NTE T0287 38 :KKII 1d2tA 62 :KLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24793 # 2cwyA.34.31 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 34 :TDEKKKIID 2cwyA 32 :TGEERRLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24794 # 1s2xA.34.48 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 34 :TD 1s2xA 42 :SN T0287 39 :KIID 1s2xA 47 :DFLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24796 # 1b4fA.34.56 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 34 :TDEKKKIID 1b4fA 57 :AGHQKKILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24797 # 1bo1A.34.253 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 34 :TDEKKKIID 1bo1A 254 :EESKKNFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24798 # 1qqfA.34.29 read from T0287.t06.many.frag # found chain 1qqfA in training set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1qqfA)L1039 T0287 35 :DEKKKIID 1qqfA 1040 :EKRQEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24799 # 1vpmA.34.144 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 34 :TDEKKKIID 1vpmA 133 :TEEEKRLYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24800 # 1w33A.34.120 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 34 :TDEKKKIID 1w33A 190 :QEESKSLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24801 # 1u84A.34.43 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 34 :TDEKKKIID 1u84A 41 :TEDARTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24802 # 1jfmA.34.132 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 34 :TDEKKKIID 1jfmA 133 :NDESGVIMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24803 # 1orjA.34.45 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 34 :TDEKKKIID 1orjA 1046 :LEKRKEFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24804 # 2d3dA.34.60 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 34 :TDEKKKIID 2d3dA 496 :LGARRKLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24805 # 1qgoA.34.86 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 34 :TDEKKKIID 1qgoA 87 :GDEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24806 # 1oi7A.34.272 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 34 :TDEKKKIID 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24807 # 1vliA.34.265 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 34 :TDEKKKIID 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24808 # 1cr1A.34.94 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 34 :TDEKKKIID 1cr1A 365 :SDSLKREII Number of specific fragments extracted= 1 number of extra gaps= 0 total=24809 # 1ct5A.34.7 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 34 :TDEKKKIID 1ct5A 9 :EDRKTQLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24810 # 1yvrA.34.237 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 34 :TDEKKKIID 1yvrA 238 :TKDELEIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24811 # 1g73A.34.70 read from T0287.t06.many.frag # found chain 1g73A in template set Warning: unaligning (T0287)T34 (1g73A)S71 because S (epsilon) conformation "forbidden" or filtered. T0287 35 :DEKKKIID 1g73A 72 :EEEDEVWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24812 # 3fapB.34.22 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 34 :T 3fapB 130 :E T0287 36 :EKKKIID 3fapB 132 :NVKGMFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24814 # 1i60A.34.75 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 34 :TDEKKKIID 1i60A 76 :EKGHNEIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24815 # 1y0nA.34.11 read from T0287.t06.many.frag # found chain 1y0nA in template set T0287 34 :TDEKKKIID 1y0nA 10 :ADTLNNLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24816 # 2jdxA.34.79 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 34 :TDEKKKIID 2jdxA 117 :KDHLKKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24817 # 1zroA.34.417 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 34 :TDEKKKIID 1zroA 418 :DLSNRKLVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24818 # 1x2iA.34.23 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 34 :TDEKKKIID 1x2iA 21 :ATLARRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24819 # 1j5sA.34.216 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 34 :TDEKKKIID 1j5sA 205 :TSTLDGFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24820 # 1fzcA.34.27 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 34 :TDEKKKIID 1fzcA 138 :KNVRAQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24821 # 1ykhA.34.43 read from T0287.t06.many.frag # found chain 1ykhA in template set Warning: unaligning (T0287)T34 because of BadResidue code BAD_PEPTIDE at template residue (1ykhA)P141 T0287 35 :DEKKKIID 1ykhA 142 :DMYERKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24822 # 2c5rA.34.35 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 34 :TDE 2c5rA 98 :LQS T0287 39 :KIID 2c5rA 103 :EVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24824 # 2f6kA.34.62 read from T0287.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)D35 (2f6kA)G64 because T (delta_L) conformation "forbidden" or filtered. T0287 34 :T 2f6kA 63 :F T0287 36 :EKKKIID 2f6kA 65 :DKAETIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24826 # 1y8aA.34.189 read from T0287.t06.many.frag # found chain 1y8aA in training set T0287 34 :TDEKKKIID 1y8aA 168 :RSEVRKIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24827 # 2cwyA.35.32 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 35 :DEKKKIIDQ 2cwyA 33 :GEERRLLQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24828 # 1b4fA.35.57 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 35 :DEKKKIIDQ 1b4fA 58 :GHQKKILNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24829 # 1s2xA.35.49 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)E36 (1s2xA)D44 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 35 :D 1s2xA 43 :N T0287 39 :KIIDQ 1s2xA 47 :DFLRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24831 # 1bo1A.35.254 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 35 :DEKKKIIDQ 1bo1A 255 :ESKKNFLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24832 # 1w33A.35.121 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 35 :DEKKKIIDQ 1w33A 191 :EESKSLLMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24833 # 1jfmA.35.133 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 35 :DEKKKIIDQ 1jfmA 134 :DESGVIMNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24834 # 1qqfA.35.30 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 35 :DEKKKIIDQ 1qqfA 1040 :EKRQEALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24835 # 1qgoA.35.87 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 35 :DEKKKIIDQ 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24836 # 2d3dA.35.61 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 35 :DEKKKIIDQ 2d3dA 497 :GARRKLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24837 # 1vliA.35.266 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 35 :DEKKKIIDQ 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24838 # 1u84A.35.44 read from T0287.t06.many.frag # found chain 1u84A in training set Warning: unaligning (T0287)E36 (1u84A)D43 because E (beta_S) conformation "forbidden" or filtered. T0287 35 :D 1u84A 42 :E T0287 37 :KKKIIDQ 1u84A 44 :ARTLAAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24840 # 1orjA.35.46 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 35 :DEKKKIIDQ 1orjA 1047 :EKRKEFVEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24841 # 1oi7A.35.273 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 35 :DEKKKIIDQ 1oi7A 274 :DTIDEIVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24842 # 1i60A.35.76 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 35 :DEKKKIIDQ 1i60A 77 :KGHNEIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24843 # 1vpmA.35.145 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 35 :DEKKKIIDQ 1vpmA 134 :EEEKRLYET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24844 # 3fapB.35.23 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)D35 (3fapB)R131 because L (left) conformation "forbidden" or filtered. T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24845 # 1yvrA.35.238 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 35 :DEKKKIIDQ 1yvrA 239 :KDELEIIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24846 # 2c5rA.35.36 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)E36 (2c5rA)S100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 35 :D 2c5rA 99 :Q T0287 39 :KIIDQ 2c5rA 103 :EVLNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24848 # 2jdxA.35.80 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 35 :DEKKKIIDQ 2jdxA 118 :DHLKKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24849 # 1fviA.35.102 read from T0287.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K38 (1fviA)K107 because P (beta_P) conformation "forbidden" or filtered. T0287 35 :DEK 1fviA 104 :DPL T0287 39 :KIIDQ 1fviA 108 :KYIDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24851 # 1ct5A.35.8 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 35 :DEKKKIIDQ 1ct5A 10 :DRKTQLIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24852 # 1zroA.35.418 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 35 :DEKKKIIDQ 1zroA 419 :LSNRKLVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24853 # 1j5sA.35.217 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 35 :DEKKKIIDQ 1j5sA 206 :STLDGFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24854 # 1fzcA.35.28 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 35 :DEKKKIIDQ 1fzcA 139 :NVRAQLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24855 # 1p4xA.35.98 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 35 :DEKKKIIDQ 1p4xA 99 :EQREKIAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24856 # 1qf5A.35.180 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 35 :DEKKKIIDQ 1qf5A 181 :VDYQKVLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24857 # 1x2iA.35.24 read from T0287.t06.many.frag # found chain 1x2iA in template set T0287 35 :DEKKKIIDQ 1x2iA 22 :TLARRLLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24858 # 1w2yA.35.123 read from T0287.t06.many.frag # found chain 1w2yA in training set T0287 35 :DEKKKIIDQ 1w2yA 124 :GDIYGILND Number of specific fragments extracted= 1 number of extra gaps= 0 total=24859 # 256bA.35.20 read from T0287.t06.many.frag # found chain 256bA in training set T0287 35 :DEKKKIIDQ 256bA 21 :DNAAQVKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24860 # 1g73A.35.71 read from T0287.t06.many.frag # found chain 1g73A in template set T0287 35 :DEKKKIIDQ 1g73A 72 :EEEDEVWQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24861 # 1b4fA.36.58 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 36 :EKKKIIDQI 1b4fA 59 :HQKKILNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24862 # 2cwyA.36.33 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 36 :EKKKIIDQI 2cwyA 34 :EERRLLQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24863 # 1s2xA.36.50 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 36 :E 1s2xA 44 :D T0287 39 :KIIDQI 1s2xA 47 :DFLRRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24865 # 1w33A.36.122 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 36 :EKKKIIDQI 1w33A 192 :ESKSLLMQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24866 # 1vliA.36.267 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 36 :EKKKIIDQI 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24867 # 1bo1A.36.255 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 36 :EKKKIIDQI 1bo1A 256 :SKKNFLEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24868 # 1qqfA.36.31 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 36 :EKKKIIDQI 1qqfA 1041 :KRQEALELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24869 # 1qgoA.36.88 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 36 :EKKKIIDQI 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24870 # 3fapB.36.24 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 T0287 36 :EKKKIIDQ 3fapB 132 :NVKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24871 # 1jfmA.36.134 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 36 :EKKKIIDQI 1jfmA 135 :ESGVIMNKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24872 # 1oi7A.36.274 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 36 :EKKKIIDQI 1oi7A 275 :TIDEIVELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24873 # 1i60A.36.77 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 36 :EKKKIIDQI 1i60A 78 :GHNEIITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24874 # 1qf5A.36.181 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 36 :EKKKIIDQI 1qf5A 182 :DYQKVLDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24875 # 1yvrA.36.239 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 36 :EKKKIIDQI 1yvrA 240 :DELEIIHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24876 # 1fviA.36.103 read from T0287.t06.many.frag # found chain 1fviA in template set T0287 36 :EKKKIIDQI 1fviA 105 :PLKKYIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24877 # 1j5sA.36.218 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 36 :EKKKIIDQI 1j5sA 207 :TLDGFLNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24878 # 2d3dA.36.62 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 36 :EKKKIIDQI 2d3dA 498 :ARRKLLKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24879 # 1vpmA.36.146 read from T0287.t06.many.frag # found chain 1vpmA in training set T0287 36 :EKKKIIDQI 1vpmA 135 :EEKRLYETA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24880 # 1zroA.36.419 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 36 :EKKKIIDQI 1zroA 420 :SNRKLVGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24881 # 1w2yA.36.124 read from T0287.t06.many.frag # found chain 1w2yA in training set T0287 36 :EKKKIIDQI 1w2yA 125 :DIYGILNDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24882 # 2jdxA.36.81 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 36 :EKKKIIDQI 2jdxA 119 :HLKKAVAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24883 # 2c5rA.36.37 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 36 :E 2c5rA 100 :S T0287 39 :KIIDQI 2c5rA 103 :EVLNYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24885 # 1u84A.36.45 read from T0287.t06.many.frag # found chain 1u84A in training set T0287 36 :EKKKIIDQI 1u84A 43 :DARTLAARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24886 # 1y8aA.36.191 read from T0287.t06.many.frag # found chain 1y8aA in training set T0287 36 :EKKKIIDQI 1y8aA 170 :EVRKIVESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24887 # 1fzcA.36.29 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 36 :EKKKIIDQI 1fzcA 140 :VRAQLVDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24888 # 1orjA.36.47 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 36 :EKKKIIDQI 1orjA 1048 :KRKEFVENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24889 # 1nekA.36.478 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 36 :EKKKIIDQI 1nekA 479 :AMAKGLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24890 # 1ct5A.36.9 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 36 :EKKKIIDQI 1ct5A 11 :RKTQLIAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24891 # 1bkrA.36.90 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 36 :EKKKIIDQI 1bkrA 91 :DEKSIITYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24892 # 1go3F.36.50 read from T0287.t06.many.frag # found chain 1go3F in training set T0287 36 :EKKKIIDQI 1go3F 51 :EAKKLVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24893 # 1b4fA.37.59 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 37 :KKKIIDQIK 1b4fA 60 :QKKILNSIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24894 # 1w33A.37.123 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 37 :KKKIIDQIK 1w33A 193 :SKSLLMQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24895 # 1s2xA.37.51 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (1s2xA)Q46 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIK 1s2xA 47 :DFLRRVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24896 # 2cwyA.37.34 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 37 :KKKIIDQIK 2cwyA 35 :ERRLLQGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24897 # 1vliA.37.268 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 37 :KKKIIDQIK 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24898 # 3fapB.37.25 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 T0287 37 :KKKIIDQ 3fapB 133 :VKGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24899 # 1i60A.37.78 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 37 :KKKIIDQIK 1i60A 79 :HNEIITEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24900 # 1bo1A.37.256 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 37 :KKKIIDQIK 1bo1A 257 :KKNFLEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24901 # 1qf5A.37.182 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 37 :KKKIIDQIK 1qf5A 183 :YQKVLDDTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24902 # 1jfmA.37.135 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 37 :KKKIIDQIK 1jfmA 136 :SGVIMNKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24903 # 2c5rA.37.38 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K37 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)Q102 Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIK 2c5rA 103 :EVLNYIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24904 # 1qgoA.37.89 read from T0287.t06.many.frag # found chain 1qgoA in template set T0287 37 :KKKIIDQIK 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24905 # 1j5sA.37.219 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 37 :KKKIIDQIK 1j5sA 208 :LDGFLNALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24906 # 1qqfA.37.32 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 37 :KKKIIDQIK 1qqfA 1042 :RQEALELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24907 # 1fzcA.37.30 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 37 :KKKIIDQIK 1fzcA 141 :RAQLVDMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24908 # 1fviA.37.104 read from T0287.t06.many.frag # found chain 1fviA in template set Warning: unaligning (T0287)K39 (1fviA)K108 because P (beta_P) conformation "forbidden" or filtered. T0287 37 :KK 1fviA 106 :LK T0287 40 :IIDQIK 1fviA 109 :YIDRVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24910 # 256bA.37.22 read from T0287.t06.many.frag # found chain 256bA in training set T0287 37 :KKKIIDQIK 256bA 23 :AAQVKDALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24911 # 1hx1B.37.19 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 37 :KKKIIDQIK 1hx1B 169 :VEKIADQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24912 # 2d3dA.37.63 read from T0287.t06.many.frag # found chain 2d3dA in template set T0287 37 :KKKIIDQIK 2d3dA 499 :RRKLLKAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24913 # 1w2yA.37.125 read from T0287.t06.many.frag # found chain 1w2yA in training set T0287 37 :KKKIIDQIK 1w2yA 126 :IYGILNDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24914 # 1nekA.37.479 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 37 :KKKIIDQIK 1nekA 480 :MAKGLEQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24915 # 2jdxA.37.82 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 37 :KKKIIDQIK 2jdxA 120 :LKKAVAEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24916 # 1qoyA.37.180 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 37 :KKKIIDQIK 1qoyA 166 :FQSQVDKIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24917 # 1orjA.37.48 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 37 :KKKIIDQIK 1orjA 1049 :RKEFVENID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24918 # 1nt2B.37.73 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 37 :KKKIIDQIK 1nt2B 85 :DRYVVALVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24919 # 1p4xA.37.100 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 37 :KKKIIDQIK 1p4xA 101 :REKIAERVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24920 # 1bkrA.37.91 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 37 :KKKIIDQIK 1bkrA 92 :EKSIITYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24921 # 1zroA.37.420 read from T0287.t06.many.frag # found chain 1zroA in template set T0287 37 :KKKIIDQIK 1zroA 421 :NRKLVGKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24922 # 1oi7A.37.275 read from T0287.t06.many.frag # found chain 1oi7A in training set T0287 37 :KKKIIDQIK 1oi7A 276 :IDEIVELVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24923 # 1yvrA.37.240 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 37 :KKKIIDQIK 1yvrA 241 :ELEIIHLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24924 # 1b4fA.38.60 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 38 :KKIIDQIKT 1b4fA 61 :KKILNSIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24925 # 1w33A.38.124 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 38 :KKIIDQIKT 1w33A 194 :KSLLMQIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24926 # 1i60A.38.79 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 38 :KKIIDQIKT 1i60A 80 :NEIITEFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24927 # 1s2xA.38.52 read from T0287.t06.many.frag # found chain 1s2xA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (1s2xA)Q46 T0287 39 :KIIDQIKT 1s2xA 47 :DFLRRVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24928 # 1qf5A.38.183 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 38 :KKIIDQIKT 1qf5A 184 :QKVLDDTMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24929 # 3fapB.38.26 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 T0287 38 :KKIIDQ 3fapB 134 :KGMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24930 # 2cwyA.38.35 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 38 :KKIIDQIKT 2cwyA 36 :RRLLQGVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24931 # 1vliA.38.269 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 38 :KKIIDQIKT 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24932 # 1hx1B.38.20 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 38 :KKIIDQIKT 1hx1B 170 :EKIADQLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24933 # 2c5rA.38.39 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)K38 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)Q102 T0287 39 :KIIDQIKT 2c5rA 103 :EVLNYIET Number of specific fragments extracted= 1 number of extra gaps= 1 total=24934 # 1jfmA.38.136 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 38 :KKIIDQIKT 1jfmA 137 :GVIMNKWKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24935 # 1bo1A.38.257 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 38 :KKIIDQIKT 1bo1A 258 :KNFLEKLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24936 # 256bA.38.23 read from T0287.t06.many.frag # found chain 256bA in training set T0287 38 :KKIIDQIKT 256bA 24 :AQVKDALTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24937 # 1nt2B.38.74 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 38 :KKIIDQIKT 1nt2B 86 :RYVVALVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24938 # 1nekA.38.480 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 38 :KKIIDQIKT 1nekA 481 :AKGLEQLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24939 # 1qqfA.38.33 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 38 :KKIIDQIKT 1qqfA 1043 :QEALELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24940 # 1fzcA.38.31 read from T0287.t06.many.frag # found chain 1fzcA in template set T0287 38 :KKIIDQIKT 1fzcA 142 :AQLVDMKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24941 # 1j5sA.38.220 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 38 :KKIIDQIKT 1j5sA 209 :DGFLNALWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24942 # 1r7jA.38.63 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 38 :KKIIDQIKT 1r7jA 64 :EELLEDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24943 # 1ofcX.38.165 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 38 :KKIIDQIKT 1ofcX 853 :ERIMGQIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24944 # 1qoyA.38.181 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 38 :KKIIDQIKT 1qoyA 167 :QSQVDKIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24945 # 1ct5A.38.11 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 38 :KKIIDQIKT 1ct5A 13 :TQLIAQYES Number of specific fragments extracted= 1 number of extra gaps= 0 total=24946 # 1bkrA.38.92 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 38 :KKIIDQIKT 1bkrA 93 :KSIITYVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24947 # 1e6iA.38.71 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 38 :KKIIDQIKT 1e6iA 390 :EDFIYDARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24948 # 1jqnA.38.28 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 38 :KKIIDQIKT 1jqnA 29 :EHILERVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24949 # 1td6A.38.53 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 38 :KKIIDQIKT 1td6A 42 :TFFLHQFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24950 # 1fi4A.38.298 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 38 :KKIIDQIKT 1fi4A 279 :KRIISWCHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24951 # 1fviA.38.105 read from T0287.t06.many.frag # found chain 1fviA in template set T0287 38 :KKIIDQIKT 1fviA 107 :KKYIDRVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=24952 # 1p4xA.38.101 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 38 :KKIIDQIKT 1p4xA 102 :EKIAERVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24953 # 1vls.38.56 read from T0287.t06.many.frag # found chain 1vls in template set T0287 38 :KKIIDQIKT 1vls 91 :QNAKTTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24954 # 1b4fA.39.61 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 39 :KIIDQIKTM 1b4fA 62 :KILNSIQVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24955 # 1i60A.39.80 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 39 :KIIDQIKTM 1i60A 81 :EIITEFKGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24956 # 3fapB.39.27 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 39 :KIIDQ 3fapB 135 :GMFEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24957 # 1s2xA.39.53 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 39 :KIIDQIKTM 1s2xA 47 :DFLRRVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24958 # 2c5rA.39.40 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 39 :KIIDQIKTM 2c5rA 103 :EVLNYIETQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24959 # 1w33A.39.125 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 39 :KIIDQIKTM 1w33A 195 :SLLMQIKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24960 # 256bA.39.24 read from T0287.t06.many.frag # found chain 256bA in training set T0287 39 :KIIDQIKTM 256bA 25 :QVKDALTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24961 # 1hx1B.39.21 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 39 :KIIDQIKTM 1hx1B 171 :KIADQLEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24962 # 1vliA.39.270 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 39 :KIIDQIKTM 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24963 # 1qf5A.39.184 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 39 :KIIDQIKTM 1qf5A 185 :KVLDDTMAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24964 # 1nt2B.39.75 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 39 :KIIDQIKTM 1nt2B 87 :YVVALVKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24965 # 1bo1A.39.258 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 39 :KIIDQIKTM 1bo1A 259 :NFLEKLKRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24966 # 1jqnA.39.29 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 39 :KIIDQIKTM 1jqnA 30 :HILERVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24967 # 1td6A.39.54 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 39 :KIIDQIKTM 1td6A 43 :FFLHQFDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24968 # 1ofcX.39.166 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 39 :KIIDQIKTM 1ofcX 854 :RIMGQIERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24969 # 1e6iA.39.72 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 39 :KIIDQIKTM 1e6iA 391 :DFIYDARLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24970 # 1j5sA.39.221 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 39 :KIIDQIKTM 1j5sA 210 :GFLNALWKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24971 # 2jdxA.39.84 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 39 :KIIDQIKTM 2jdxA 122 :KAVAEIEEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24972 # 1ct5A.39.12 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 39 :KIIDQIKTM 1ct5A 14 :QLIAQYESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24973 # 1jfmA.39.137 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 39 :KIIDQIKTM 1jfmA 138 :VIMNKWKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24974 # 2cwyA.39.36 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 39 :KIIDQIKTM 2cwyA 37 :RLLQGVILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24975 # 1qqfA.39.34 read from T0287.t06.many.frag # found chain 1qqfA in training set T0287 39 :KIIDQIKTM 1qqfA 1044 :EALELIKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24976 # 1gw5S.39.78 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 39 :KIIDQIKTM 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24977 # 1bkrA.39.93 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 39 :KIIDQIKTM 1bkrA 94 :SIITYVVTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24978 # 1orjA.39.50 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 39 :KIIDQIKTM 1orjA 1051 :EFVENIDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24979 # 1fviA.39.106 read from T0287.t06.many.frag # found chain 1fviA in template set T0287 39 :KIIDQIKTM 1fviA 108 :KYIDRVEDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24980 # 1r7jA.39.64 read from T0287.t06.many.frag # found chain 1r7jA in training set T0287 39 :KIIDQIKTM 1r7jA 65 :ELLEDIRKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24981 # 1p4xA.39.102 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 39 :KIIDQIKTM 1p4xA 103 :KIAERVTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24982 # 1vls.39.57 read from T0287.t06.many.frag # found chain 1vls in template set T0287 39 :KIIDQIKTM 1vls 92 :NAKTTLAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24983 # 1h05A.39.56 read from T0287.t06.many.frag # found chain 1h05A in training set T0287 39 :KIIDQIKTM 1h05A 57 :QLLDWIHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24984 # 1i60A.40.81 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 40 :IIDQIKTMH 1i60A 82 :IITEFKGMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24985 # 1b4fA.40.62 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 40 :IIDQIKTMH 1b4fA 63 :ILNSIQVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24986 # 3fapB.40.28 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 T0287 40 :IIDQ 3fapB 136 :MFEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=24988 # 2c5rA.40.41 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 40 :IIDQIKTMH 2c5rA 104 :VLNYIETQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24989 # 256bA.40.25 read from T0287.t06.many.frag # found chain 256bA in training set T0287 40 :IIDQIKTMH 256bA 26 :VKDALTKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24990 # 1nt2B.40.76 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 40 :IIDQIKTMH 1nt2B 88 :VVALVKALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24991 # 1w33A.40.126 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 40 :IIDQIKTMH 1w33A 196 :LLMQIKSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24992 # 1s2xA.40.54 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 40 :IIDQIKTMH 1s2xA 48 :FLRRVQELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24993 # 1jqnA.40.30 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 40 :IIDQIKTMH 1jqnA 31 :ILERVETIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24994 # 1hx1B.40.22 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 40 :IIDQIKTMH 1hx1B 172 :IADQLEELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24995 # 1e6iA.40.73 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 40 :IIDQIKTMH 1e6iA 392 :FIYDARLVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24996 # 1td6A.40.55 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 40 :IIDQIKTMH 1td6A 44 :FLHQFDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24997 # 1gw5S.40.79 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 40 :IIDQIKTMH 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24998 # 1ofcX.40.167 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 40 :IIDQIKTMH 1ofcX 855 :IMGQIERGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24999 # 1orjA.40.51 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 40 :IIDQIKTMH 1orjA 1052 :FVENIDRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25000 # 1vls.40.58 read from T0287.t06.many.frag # found chain 1vls in template set T0287 40 :IIDQIKTMH 1vls 93 :AKTTLAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25001 # 1qf5A.40.185 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 40 :IIDQIKTMH 1qf5A 186 :VLDDTMAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25002 # 1vliA.40.271 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 40 :IIDQIKTMH 1vliA 260 :MVDGIRKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25003 # 1j5sA.40.222 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 40 :IIDQIKTMH 1j5sA 211 :FLNALWKSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25004 # 1bo1A.40.259 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 40 :IIDQIKTMH 1bo1A 260 :FLEKLKRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25005 # 1xlyA.40.49 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 40 :IIDQIKTMH 1xlyA 55 :LIKFVKKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25006 # 1bkrA.40.94 read from T0287.t06.many.frag # found chain 1bkrA in training set T0287 40 :IIDQIKTMH 1bkrA 95 :IITYVVTYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25007 # 1gqiA.40.614 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 40 :IIDQIKTMH 1gqiA 619 :GVEQVRAMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25008 # 1nekA.40.482 read from T0287.t06.many.frag # found chain 1nekA in template set T0287 40 :IIDQIKTMH 1nekA 483 :GLEQLKVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25009 # 1p4xA.40.103 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 40 :IIDQIKTMH 1p4xA 104 :IAERVTLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25010 # 1ct5A.40.13 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 40 :IIDQIKTMH 1ct5A 15 :LIAQYESVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25011 # 2jdxA.40.85 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 40 :IIDQIKTMH 2jdxA 123 :AVAEIEEMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25012 # 1v74B.40.43 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 40 :IIDQIKTMH 1v74B 44 :ILNCGEELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25013 # 1hulA.40.63 read from T0287.t06.many.frag # found chain 1hulA in template set Warning: unaligning (T0287)Q43 because of BadResidue code BAD_PEPTIDE in next template residue (1hulA)L72 Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE at template residue (1hulA)L72 T0287 40 :IID 1hulA 68 :LFK T0287 45 :KTMH 1hulA 73 :SLIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25015 # 2cwyA.40.37 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 40 :IIDQIKTMH 2cwyA 38 :LLQGVILLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25016 # 1i60A.41.82 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 41 :IDQIKTMHD 1i60A 83 :ITEFKGMME Number of specific fragments extracted= 1 number of extra gaps= 0 total=25017 # 1b4fA.41.63 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 41 :IDQIKTMHD 1b4fA 64 :LNSIQVMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25018 # 2c5rA.41.42 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 41 :IDQIKTMHD 2c5rA 105 :LNYIETQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25019 # 3fapB.41.29 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 T0287 41 :IDQ 3fapB 137 :FEV T0287 48 :H 3fapB 144 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=25021 # 1jqnA.41.31 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 41 :IDQIKTMHD 1jqnA 32 :LERVETIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25022 # 256bA.41.26 read from T0287.t06.many.frag # found chain 256bA in training set T0287 41 :IDQIKTMHD 256bA 27 :KDALTKMRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25023 # 1nt2B.41.77 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 41 :IDQIKTMHD 1nt2B 89 :VALVKALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25024 # 1s2xA.41.55 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 41 :IDQIKTMHD 1s2xA 49 :LRRVQELRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25025 # 1hx1B.41.23 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 41 :IDQIKTMHD 1hx1B 173 :ADQLEELNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25026 # 1bf5A.41.7 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 41 :IDQIKTMHD 1bf5A 143 :DSKVRNVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25027 # 1w33A.41.127 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 41 :IDQIKTMHD 1w33A 197 :LMQIKSNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25028 # 1gqiA.41.615 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 41 :IDQIKTMHD 1gqiA 620 :VEQVRAMQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25029 # 1e6iA.41.74 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 41 :IDQIKTMHD 1e6iA 393 :IYDARLVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25030 # 1td6A.41.56 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 41 :IDQIKTMHD 1td6A 45 :LHQFDKVME Number of specific fragments extracted= 1 number of extra gaps= 0 total=25031 # 1ct5A.41.14 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 41 :IDQIKTMHD 1ct5A 16 :IAQYESVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25032 # 1xlyA.41.50 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 41 :IDQIKTMHD 1xlyA 56 :IKFVKKLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25033 # 1gw5S.41.80 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 41 :IDQIKTMHD 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25034 # 2jdxA.41.86 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 41 :IDQIKTMHD 2jdxA 124 :VAEIEEMCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25035 # 1orjA.41.52 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 41 :IDQIKTMHD 1orjA 1053 :VENIDRVYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25036 # 1bo1A.41.260 read from T0287.t06.many.frag # found chain 1bo1A in template set T0287 41 :IDQIKTMHD 1bo1A 261 :LEKLKRDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25037 # 1vls.41.59 read from T0287.t06.many.frag # found chain 1vls in template set T0287 41 :IDQIKTMHD 1vls 94 :KTTLAQAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25038 # 1vdkA.41.204 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 41 :IDQIKTMHD 1vdkA 205 :AAQLKTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25039 # 1yvhA.41.62 read from T0287.t06.many.frag # found chain 1yvhA in template set T0287 41 :IDQIKTMHD 1yvhA 85 :LDLLPDTYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25040 # 1qf5A.41.186 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 41 :IDQIKTMHD 1qf5A 187 :LDDTMAVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25041 # 1bgf.41.80 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 41 :IDQIKTMHD 1bgf 80 :IHNLKRIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25042 # 1ofcX.41.168 read from T0287.t06.many.frag # found chain 1ofcX in template set T0287 41 :IDQIKTMHD 1ofcX 856 :MGQIERGEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25043 # 1v74B.41.44 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 41 :IDQIKTMHD 1v74B 45 :LNCGEELFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25044 # 1vliA.41.272 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 41 :IDQIKTMHD 1vliA 261 :VDGIRKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25045 # 1j5sA.41.223 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 41 :IDQIKTMHD 1j5sA 212 :LNALWKSHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25046 # 2f6lA.41.40 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 41 :IDQIKTMHD 2f6lA 74 :EQQLAKLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25047 # 1i60A.42.83 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 42 :DQIKTMHDF 1i60A 84 :TEFKGMMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=25048 # 1b4fA.42.64 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 42 :DQIKTMHDF 1b4fA 65 :NSIQVMRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25049 # 1nt2B.42.78 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 42 :DQIKTMHDF 1nt2B 90 :ALVKALEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25050 # 1jqnA.42.32 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 42 :DQIKTMHDF 1jqnA 33 :ERVETIRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25051 # 3fapB.42.30 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)H48 (3fapB)H144 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 42 :DQ 3fapB 138 :EV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25052 # 1bf5A.42.8 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 42 :DQIKTMHDF 1bf5A 144 :SKVRNVKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25053 # 2c5rA.42.43 read from T0287.t06.many.frag # found chain 2c5rA in template set T0287 42 :DQIKTMHDF 2c5rA 106 :NYIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25054 # 256bA.42.27 read from T0287.t06.many.frag # found chain 256bA in training set T0287 42 :DQIKTMHDF 256bA 28 :DALTKMRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25055 # 1gqiA.42.616 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 42 :DQIKTMHDF 1gqiA 621 :EQVRAMQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25056 # 1e6iA.42.75 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 42 :DQIKTMHDF 1e6iA 394 :YDARLVFNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25057 # 1s2xA.42.56 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 42 :DQIKTMHDF 1s2xA 50 :RRVQELRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25058 # 1hx1B.42.24 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 42 :DQIKTMHDF 1hx1B 174 :DQLEELNKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25059 # 1xlyA.42.51 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 42 :DQIKTMHDF 1xlyA 57 :KFVKKLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25060 # 1orjA.42.53 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 42 :DQIKTMHDF 1orjA 1054 :ENIDRVYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25061 # 1td6A.42.57 read from T0287.t06.many.frag # found chain 1td6A in template set T0287 42 :DQIKTMHDF 1td6A 46 :HQFDKVMEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25062 # 2f6lA.42.41 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 42 :DQIKTMHDF 2f6lA 75 :QQLAKLGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=25063 # 1zupA.42.285 read from T0287.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)D42 because of BadResidue code BAD_PEPTIDE at template residue (1zupA)L274 T0287 43 :QIKTMHDF 1zupA 275 :PIQFLEEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=25064 # 1v74B.42.45 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 42 :DQIKTMHDF 1v74B 46 :NCGEELFMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25065 # 1ct5A.42.15 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 42 :DQIKTMHDF 1ct5A 17 :AQYESVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25066 # 1vdkA.42.205 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 42 :DQIKTMHDF 1vdkA 206 :AQLKTTLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25067 # 1gw5S.42.81 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 42 :DQIKTMHDF 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25068 # 1fjgT.42.53 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 42 :DQIKTMHDF 1fjgT 54 :KIMRKAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25069 # 1nogA.42.29 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 42 :DQIKTMHDF 1nogA 30 :GTIDELNSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25070 # 1u0fA.42.219 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 42 :DQIKTMHDF 1u0fA 219 :TNAETAKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25071 # 1w33A.42.128 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 42 :DQIKTMHDF 1w33A 198 :MQIKSNLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25072 # 1kkoA.42.212 read from T0287.t06.many.frag # found chain 1kkoA in training set T0287 42 :DQIKTMHDF 1kkoA 213 :EYVRWLSDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25073 # 1alu.42.118 read from T0287.t06.many.frag # found chain 1alu in template set T0287 42 :DQIKTMHDF 1alu 117 :MSTKVLIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25074 # 1moq.42.194 read from T0287.t06.many.frag # found chain 1moq in training set T0287 42 :DQIKTMHDF 1moq 435 :HGLQALPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25075 # 1ail.42.37 read from T0287.t06.many.frag # found chain 1ail in template set T0287 42 :DQIKTMHDF 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25076 # 2acvA.42.430 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 42 :DQIKTMHDF 2acvA 431 :KKVQEMKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25077 # 1i60A.43.84 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 43 :QIKTMHDFF 1i60A 85 :EFKGMMETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25078 # 1nt2B.43.79 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 43 :QIKTMHDFF 1nt2B 91 :LVKALEEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25079 # 1jqnA.43.33 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 43 :QIKTMHDFF 1jqnA 34 :RVETIRKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25080 # 2c5rA.43.44 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 T0287 43 :QIKTMHDF 2c5rA 107 :YIETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=25081 # 3fapB.43.31 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 43 :Q 3fapB 139 :V T0287 48 :H 3fapB 144 :H T0287 51 :F 3fapB 147 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=25084 # 1e6iA.43.76 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 43 :QIKTMHDFF 1e6iA 395 :DARLVFNNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25085 # 1gqiA.43.617 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 43 :QIKTMHDFF 1gqiA 622 :QVRAMQRTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25086 # 1bf5A.43.9 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 43 :QIKTMHDFF 1bf5A 145 :KVRNVKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25087 # 1hx1B.43.25 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 43 :QIKTMHDFF 1hx1B 175 :QLEELNKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25088 # 1b4fA.43.65 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 43 :QIKTMHDFF 1b4fA 66 :SIQVMRAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25089 # 256bA.43.28 read from T0287.t06.many.frag # found chain 256bA in training set T0287 43 :QIKTMHDFF 256bA 29 :ALTKMRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25090 # 1vdkA.43.206 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 43 :QIKTMHDFF 1vdkA 207 :QLKTTLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25091 # 1moq.43.195 read from T0287.t06.many.frag # found chain 1moq in training set T0287 43 :QIKTMHDFF 1moq 436 :GLQALPSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25092 # 1s2xA.43.57 read from T0287.t06.many.frag # found chain 1s2xA in template set T0287 43 :QIKTMHDFF 1s2xA 51 :RVQELRINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25093 # 1zupA.43.286 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 43 :QIKTMHDFF 1zupA 275 :PIQFLEENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25094 # 1n1fA.43.117 read from T0287.t06.many.frag # found chain 1n1fA in template set T0287 43 :QIKTMHDFF 1n1fA 118 :ATRVIHDNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25095 # 2acvA.43.431 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 43 :QIKTMHDFF 2acvA 432 :KVQEMKEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25096 # 1orjA.43.54 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 43 :QIKTMHDFF 1orjA 1055 :NIDRVYDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25097 # 2ahmA.43.13 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 43 :QIKTMHDFF 2ahmA 14 :TSVVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25098 # 1u0fA.43.220 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 43 :QIKTMHDFF 1u0fA 220 :NAETAKEWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25099 # 1ail.43.38 read from T0287.t06.many.frag # found chain 1ail in template set T0287 43 :QIKTMHDFF 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25100 # 1fjgT.43.54 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 43 :QIKTMHDFF 1fjgT 55 :IMRKAESLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25101 # 1ct5A.43.16 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 43 :QIKTMHDFF 1ct5A 18 :QYESVREVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25102 # 2etsA.43.22 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 43 :QIKTMHDFF 2etsA 11 :EVNNMQQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25103 # 1xlyA.43.52 read from T0287.t06.many.frag # found chain 1xlyA in template set T0287 43 :QIKTMHDFF 1xlyA 58 :FVKKLRFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25104 # 1nogA.43.30 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 43 :QIKTMHDFF 1nogA 31 :TIDELNSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25105 # 1vjxA.43.53 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 43 :QIKTMHDFF 1vjxA 42 :QERIHAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25106 # 2btoA.43.418 read from T0287.t06.many.frag # found chain 2btoA in template set T0287 43 :QIKTMHDFF 2btoA 419 :SAQELVQSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25107 # 1v74B.43.46 read from T0287.t06.many.frag # found chain 1v74B in template set T0287 43 :QIKTMHDFF 1v74B 47 :CGEELFMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25108 # 2cbiA.43.497 read from T0287.t06.many.frag # found chain 2cbiA in template set T0287 43 :QIKTMHDFF 2cbiA 528 :EFARMEEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25109 # 1i60A.44.85 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 44 :IKTMHDFFK 1i60A 86 :FKGMMETCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25110 # 1bf5A.44.10 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 44 :IKTMHDFFK 1bf5A 146 :VRNVKDKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25111 # 1jqnA.44.34 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 44 :IKTMHDFFK 1jqnA 35 :VETIRKLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25112 # 1nt2B.44.80 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 44 :IKTMHDFFK 1nt2B 92 :VKALEEIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25113 # 1e6iA.44.77 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 44 :IKTMHDFFK 1e6iA 396 :ARLVFNNCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25114 # 1orjA.44.55 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 44 :IKTMHDFFK 1orjA 1056 :IDRVYDIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25115 # 1moq.44.196 read from T0287.t06.many.frag # found chain 1moq in training set T0287 44 :IKTMHDFFK 1moq 437 :LQALPSRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25116 # 1zupA.44.287 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 44 :IKTMHDFFK 1zupA 276 :IQFLEENLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25117 # 1n1fA.44.118 read from T0287.t06.many.frag # found chain 1n1fA in template set T0287 44 :IKTMHDFFK 1n1fA 119 :TRVIHDNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25118 # 1gqiA.44.618 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 44 :IKTMHDFFK 1gqiA 623 :VRAMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25119 # 3fapB.44.32 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)I44 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)E141 Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)H48 (3fapB)H144 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 51 :FK 3fapB 147 :ME Number of specific fragments extracted= 1 number of extra gaps= 1 total=25120 # 2acvA.44.432 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 44 :IKTMHDFFK 2acvA 433 :VQEMKEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25121 # 1u0fA.44.221 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 44 :IKTMHDFFK 1u0fA 221 :AETAKEWFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25122 # 1fjgT.44.55 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 44 :IKTMHDFFK 1fjgT 56 :MRKAESLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25123 # 1ow4A.44.96 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 44 :IKTMHDFFK 1ow4A 86 :AKAVNDCAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25124 # 1ail.44.39 read from T0287.t06.many.frag # found chain 1ail in template set T0287 44 :IKTMHDFFK 1ail 40 :QKSLRGRGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25125 # 1hx1B.44.26 read from T0287.t06.many.frag # found chain 1hx1B in template set T0287 44 :IKTMHDFFK 1hx1B 176 :LEELNKELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25126 # 1nogA.44.31 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 44 :IKTMHDFFK 1nogA 32 :IDELNSFIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25127 # 2etsA.44.23 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 44 :IKTMHDFFK 2etsA 12 :VNNMQQNFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25128 # 2cbiA.44.498 read from T0287.t06.many.frag # found chain 2cbiA in template set T0287 44 :IKTMHDFFK 2cbiA 529 :FARMEEACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25129 # 2c5rA.44.45 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 44 :IKTMHDF 2c5rA 108 :IETQRTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=25130 # 1b4fA.44.66 read from T0287.t06.many.frag # found chain 1b4fA in template set T0287 44 :IKTMHDFFK 1b4fA 67 :IQVMRAQMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25131 # 1kkoA.44.214 read from T0287.t06.many.frag # found chain 1kkoA in training set T0287 44 :IKTMHDFFK 1kkoA 215 :VRWLSDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25132 # 256bA.44.29 read from T0287.t06.many.frag # found chain 256bA in training set T0287 44 :IKTMHDFFK 256bA 30 :LTKMRAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25133 # 1h6kA.44.546 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 44 :IKTMHDFFK 1h6kA 566 :LAKFHEVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25134 # 2ahmA.44.14 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 44 :IKTMHDFFK 2ahmA 15 :SVVLLSVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25135 # 1ct5A.44.17 read from T0287.t06.many.frag # found chain 1ct5A in template set T0287 44 :IKTMHDFFK 1ct5A 19 :YESVREVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25136 # 1gw5S.44.83 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 44 :IKTMHDFFK 1gw5S 84 :IHNFVEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25137 # 2f6lA.44.43 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 44 :IKTMHDFFK 2f6lA 77 :LAKLGEDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25138 # 1h5uA.44.734 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 44 :IKTMHDFFK 1h5uA 735 :IPELRQIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25139 # 1jqnA.45.35 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 45 :KTMHDFFKQ 1jqnA 36 :ETIRKLSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25140 # 1nt2B.45.81 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 45 :KTMHDFFKQ 1nt2B 93 :KALEEIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=25141 # 1orjA.45.56 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 45 :KTMHDFFKQ 1orjA 1057 :DRVYDIISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25142 # 1moq.45.197 read from T0287.t06.many.frag # found chain 1moq in training set T0287 45 :KTMHDFFKQ 1moq 438 :QALPSRIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25143 # 1u0fA.45.222 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 45 :KTMHDFFKQ 1u0fA 222 :ETAKEWFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25144 # 1zupA.45.288 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 45 :KTMHDFFKQ 1zupA 277 :QFLEENLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25145 # 1i60A.45.86 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 45 :KTMHDFFKQ 1i60A 87 :KGMMETCKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25146 # 1e6iA.45.78 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 45 :KTMHDFFKQ 1e6iA 397 :RLVFNNCRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25147 # 1bf5A.45.11 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 45 :KTMHDFFKQ 1bf5A 147 :RNVKDKVMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25148 # 1ow4A.45.97 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 45 :KTMHDFFKQ 1ow4A 87 :KAVNDCANQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25149 # 2acvA.45.433 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 45 :KTMHDFFKQ 2acvA 434 :QEMKEMSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25150 # 1n1fA.45.119 read from T0287.t06.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)H48 (1n1fA)H123 because H (helix) conformation "forbidden" or filtered. T0287 45 :KTM 1n1fA 120 :RVI T0287 49 :DFFKQ 1n1fA 124 :DNYDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25152 # 1ail.45.40 read from T0287.t06.many.frag # found chain 1ail in template set T0287 45 :KTMHDFFKQ 1ail 41 :KSLRGRGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=25153 # 1h6kA.45.547 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 45 :KTMHDFFKQ 1h6kA 567 :AKFHEVFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25154 # 2etsA.45.24 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 45 :KTMHDFFKQ 2etsA 13 :NNMQQNFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25155 # 1fjgT.45.56 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 45 :KTMHDFFKQ 1fjgT 57 :RKAESLIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25156 # 3fapB.45.33 read from T0287.t06.many.frag # found chain 3fapB in template set Warning: unaligning (T0287)K45 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)E141 Warning: unaligning (T0287)T46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (3fapB)L143 Warning: unaligning (T0287)M47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (3fapB)L143 Warning: unaligning (T0287)D49 because of BadResidue code BAD_PEPTIDE in next template residue (3fapB)M146 Warning: unaligning (T0287)F50 because of BadResidue code BAD_PEPTIDE at template residue (3fapB)M146 T0287 48 :H 3fapB 144 :H T0287 51 :FKQ 3fapB 147 :MER Number of specific fragments extracted= 2 number of extra gaps= 2 total=25158 # 1vjxA.45.55 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 45 :KTMHDFFKQ 1vjxA 44 :RIHAEIFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25159 # 1h5uA.45.735 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 45 :KTMHDFFKQ 1h5uA 736 :PELRQIIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25160 # 1p4xA.45.108 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 45 :KTMHDFFKQ 1p4xA 109 :TLFDQIIKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25161 # 1jfmA.45.143 read from T0287.t06.many.frag # found chain 1jfmA in template set T0287 45 :KTMHDFFKQ 1jfmA 144 :KDDGEFVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25162 # 1nogA.45.32 read from T0287.t06.many.frag # found chain 1nogA in training set T0287 45 :KTMHDFFKQ 1nogA 33 :DELNSFIGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25163 # 1gqiA.45.619 read from T0287.t06.many.frag # found chain 1gqiA in training set T0287 45 :KTMHDFFKQ 1gqiA 624 :RAMQRTWDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25164 # 2ahmA.45.15 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 45 :KTMHDFFKQ 2ahmA 16 :VVLLSVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25165 # 1j5sA.45.227 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)H48 (1j5sA)H219 because H (helix) conformation "forbidden" or filtered. T0287 45 :KTM 1j5sA 216 :WKS T0287 49 :DFFKQ 1j5sA 220 :EHFKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25167 # 2f6lA.45.44 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 45 :KTMHDFFKQ 2f6lA 78 :AKLGEDARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25168 # 1jeyA.45.518 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 45 :KTMHDFFKQ 1jeyA 519 :GSLVDEFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25169 # 1gw5S.45.84 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 45 :KTMHDFFKQ 1gw5S 85 :HNFVEVLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25170 # 2c5rA.45.46 read from T0287.t06.many.frag # found chain 2c5rA in template set Warning: unaligning (T0287)F51 because of BadResidue code BAD_PEPTIDE in next template residue (2c5rA)K116 Warning: unaligning (T0287)K52 because of BadResidue code BAD_PEPTIDE at template residue (2c5rA)K116 T0287 45 :KTMHDF 2c5rA 109 :ETQRTY T0287 53 :Q 2c5rA 117 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25172 # 1vdkA.45.208 read from T0287.t06.many.frag # found chain 1vdkA in training set T0287 45 :KTMHDFFKQ 1vdkA 209 :KTTLAAVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25173 # 1moq.46.198 read from T0287.t06.many.frag # found chain 1moq in training set T0287 46 :TMHDFFKQM 1moq 439 :ALPSRIEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25174 # 1zupA.46.289 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 46 :TMHDFFKQM 1zupA 278 :FLEENLSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25175 # 1orjA.46.57 read from T0287.t06.many.frag # found chain 1orjA in template set T0287 46 :TMHDFFKQM 1orjA 1058 :RVYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25176 # 1u0fA.46.223 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 46 :TMHDFFKQM 1u0fA 223 :TAKEWFLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25177 # 1jqnA.46.36 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 46 :TMHDFFKQM 1jqnA 37 :TIRKLSKSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25178 # 1ow4A.46.98 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 46 :TMHDFFKQM 1ow4A 88 :AVNDCANQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25179 # 1e6iA.46.79 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 46 :TMHDFFKQM 1e6iA 398 :LVFNNCRMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25180 # 1h6kA.46.548 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 46 :TMHDFFKQM 1h6kA 568 :KFHEVFKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25181 # 1bf5A.46.12 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 46 :TMHDFFKQM 1bf5A 148 :NVKDKVMCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25182 # 2acvA.46.434 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 46 :TMHDFFKQM 2acvA 435 :EMKEMSRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25183 # 1i60A.46.87 read from T0287.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)M54 (1i60A)L96 because G (3-10) conformation "forbidden" or filtered. T0287 46 :TMHDFFKQ 1i60A 88 :GMMETCKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=25184 # 1n1fA.46.120 read from T0287.t06.many.frag # found chain 1n1fA in template set T0287 46 :TMHDFFKQM 1n1fA 121 :VIHDNYDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25185 # 1ail.46.41 read from T0287.t06.many.frag # found chain 1ail in template set T0287 46 :TMHDFFKQM 1ail 42 :SLRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25186 # 1nt2B.46.82 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 46 :TMHDFFKQM 1nt2B 94 :ALEEIDESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25187 # 1vjxA.46.56 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 46 :TMHDFFKQM 1vjxA 45 :IHAEIFRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25188 # 2etsA.46.25 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 46 :TMHDFFKQM 2etsA 14 :NMQQNFENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25189 # 1w33A.46.71 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 46 :TMHDFFKQM 1w33A 141 :KLKEILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25190 # 1jeyA.46.519 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 46 :TMHDFFKQM 1jeyA 520 :SLVDEFKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25191 # 1fjgT.46.57 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 46 :TMHDFFKQM 1fjgT 58 :KAESLIDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25192 # 1alu.46.122 read from T0287.t06.many.frag # found chain 1alu in template set T0287 46 :TMHDFFKQM 1alu 121 :VLIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25193 # 1gw5S.46.85 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 46 :TMHDFFKQM 1gw5S 86 :NFVEVLNEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25194 # 1p4xA.46.109 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 46 :TMHDFFKQM 1p4xA 110 :LFDQIIKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25195 # 1h5uA.46.736 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 46 :TMHDFFKQM 1h5uA 737 :ELRQIIEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25196 # 2ahmA.46.16 read from T0287.t06.many.frag # found chain 2ahmA in template set T0287 46 :TMHDFFKQM 2ahmA 17 :VLLSVLQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25197 # 1gqiA.46.620 read from T0287.t06.many.frag # found chain 1gqiA in training set Warning: unaligning (T0287)Q53 (1gqiA)Q632 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)M54 (1gqiA)Q633 because G (3-10) conformation "forbidden" or filtered. T0287 46 :TMHDFFK 1gqiA 625 :AMQRTWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=25198 # 1qlwA.46.267 read from T0287.t06.many.frag # found chain 1qlwA in training set T0287 46 :TMHDFFKQM 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25199 # 2f6lA.46.45 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 46 :TMHDFFKQM 2f6lA 79 :KLGEDARSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25200 # 1j5sA.46.228 read from T0287.t06.many.frag # found chain 1j5sA in template set T0287 46 :TMHDFFKQM 1j5sA 217 :KSHEHFKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25201 # 1qf5A.46.191 read from T0287.t06.many.frag # found chain 1qf5A in template set T0287 46 :TMHDFFKQM 1qf5A 192 :AVADILTSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25202 # 1r8iA.46.134 read from T0287.t06.many.frag # found chain 1r8iA in template set T0287 46 :TMHDFFKQM 1r8iA 159 :DMQALTEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25203 # 1moq.47.199 read from T0287.t06.many.frag # found chain 1moq in training set T0287 47 :MHDFFKQMH 1moq 440 :LPSRIEQML Number of specific fragments extracted= 1 number of extra gaps= 0 total=25204 # 1u0fA.47.224 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 47 :MHDFFKQMH 1u0fA 224 :AKEWFLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25205 # 1ow4A.47.99 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 47 :MHDFFKQMH 1ow4A 89 :VNDCANQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25206 # 1zupA.47.290 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 47 :MHDFFKQMH 1zupA 279 :LEENLSYYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25207 # 1e6iA.47.80 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 47 :MHDFFKQMH 1e6iA 399 :VFNNCRMYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25208 # 1jqnA.47.37 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 47 :MHDFFKQMH 1jqnA 38 :IRKLSKSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25209 # 1h6kA.47.549 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 47 :MHDFFKQMH 1h6kA 569 :FHEVFKTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25210 # 1w33A.47.72 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 47 :MHDFFKQMH 1w33A 142 :LKEILEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25211 # 2acvA.47.435 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 47 :MHDFFKQMH 2acvA 436 :MKEMSRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25212 # 1orjA.47.58 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 T0287 47 :MHDFFKQM 1orjA 1059 :VYDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25213 # 1ail.47.42 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1ail 43 :LRGRGSTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25214 # 1nt2B.47.83 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 47 :MHDFFKQMH 1nt2B 95 :LEEIDESIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25215 # 1vjxA.47.57 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 47 :MHDFFKQMH 1vjxA 46 :HAEIFRKMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25216 # 1jeyA.47.520 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 47 :MHDFFKQMH 1jeyA 521 :LVDEFKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25217 # 1n1fA.47.121 read from T0287.t06.many.frag # found chain 1n1fA in template set Warning: unaligning (T0287)M54 (1n1fA)L129 because P (beta_P) conformation "forbidden" or filtered. T0287 47 :MHDFFKQ 1n1fA 122 :IHDNYDQ T0287 55 :H 1n1fA 130 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=25219 # 2f6lA.47.46 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 47 :MHDFFKQMH 2f6lA 80 :LGEDARSQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25220 # 1bf5A.47.13 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 47 :MHDFFKQMH 1bf5A 149 :VKDKVMCIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25221 # 1ajsA.47.311 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 47 :MHDFFKQMH 1ajsA 312 :DPELFHEWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25222 # 2etsA.47.26 read from T0287.t06.many.frag # found chain 2etsA in template set T0287 47 :MHDFFKQMH 2etsA 15 :MQQNFENVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25223 # 1i60A.47.88 read from T0287.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)H55 (1i60A)G97 because L (left) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1i60A 89 :MMETCKTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25224 # 1h5uA.47.737 read from T0287.t06.many.frag # found chain 1h5uA in training set T0287 47 :MHDFFKQMH 1h5uA 738 :LRQIIEQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25225 # 1ei6A.47.220 read from T0287.t06.many.frag # found chain 1ei6A in template set Warning: unaligning (T0287)H55 (1ei6A)H230 because H (helix) conformation "forbidden" or filtered. T0287 47 :MHDFFKQM 1ei6A 222 :MDSYFKRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=25226 # 1p4xA.47.110 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 47 :MHDFFKQMH 1p4xA 111 :FDQIIKQFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25227 # 1t98A.47.163 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 47 :MHDFFKQMH 1t98A 164 :VAEIFDSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25228 # 1qlwA.47.268 read from T0287.t06.many.frag # found chain 1qlwA in training set Warning: unaligning (T0287)H48 (1qlwA)H270 because H (helix) conformation "forbidden" or filtered. T0287 47 :M 1qlwA 269 :C T0287 49 :DFFKQMH 1qlwA 271 :AFIDALN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25230 # 1fjgT.47.58 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 47 :MHDFFKQMH 1fjgT 59 :AESLIDKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25231 # 1alu.47.123 read from T0287.t06.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 T0287 47 :MHDFFKQM 1alu 122 :LIQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25232 # 1hz4A.47.219 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 47 :MHDFFKQMH 1hz4A 218 :VRVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25233 # 1r8iA.47.135 read from T0287.t06.many.frag # found chain 1r8iA in template set T0287 47 :MHDFFKQMH 1r8iA 160 :MQALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25234 # 1wbeA.47.157 read from T0287.t06.many.frag # found chain 1wbeA in template set T0287 47 :MHDFFKQMH 1wbeA 158 :KSDFLKALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25235 # 1moq.48.200 read from T0287.t06.many.frag # found chain 1moq in training set T0287 48 :HDFFKQMHT 1moq 441 :PSRIEQMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25236 # 1h6kA.48.550 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 48 :HDFFKQMHT 1h6kA 570 :HEVFKTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25237 # 1ow4A.48.100 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 48 :HDFFKQMHT 1ow4A 90 :NDCANQVNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25238 # 1zupA.48.291 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 48 :HDFFKQMHT 1zupA 280 :EENLSYYLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25239 # 1e6iA.48.81 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 48 :HDFFKQMHT 1e6iA 400 :FNNCRMYNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25240 # 1u0fA.48.225 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1u0fA 225 :KEWFLEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25241 # 2acvA.48.436 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 48 :HDFFKQMHT 2acvA 437 :KEMSRNAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25242 # 1jqnA.48.38 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 48 :HDFFKQMHT 1jqnA 39 :RKLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25243 # 1w33A.48.73 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 48 :HDFFKQMHT 1w33A 143 :KEILEILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25244 # 1ail.48.43 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQM 1ail 44 :RGRGSTL T0287 56 :T 1ail 52 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25246 # 1hz4A.48.220 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1hz4A 219 :RVIYWQMT Number of specific fragments extracted= 1 number of extra gaps= 1 total=25247 # 2f6lA.48.47 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 48 :HDFFKQMHT 2f6lA 81 :GEDARSQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25248 # 1jeyA.48.521 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 48 :HDFFKQMHT 1jeyA 522 :VDEFKELVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25249 # 1vjxA.48.58 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 48 :HDFFKQMHT 1vjxA 47 :AEIFRKMSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25250 # 1ajsA.48.312 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 48 :HDFFKQMHT 1ajsA 313 :PELFHEWTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25251 # 1orjA.48.59 read from T0287.t06.many.frag # found chain 1orjA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)S1068 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)S1068 T0287 48 :HDFFKQM 1orjA 1060 :YDIISAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25252 # 1ei6A.48.221 read from T0287.t06.many.frag # found chain 1ei6A in template set T0287 48 :HDFFKQMHT 1ei6A 223 :DSYFKRYHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25253 # 1alu.48.124 read from T0287.t06.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 T0287 48 :HDFFKQM 1alu 123 :IQFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25254 # 1nt2B.48.84 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 48 :HDFFKQMHT 1nt2B 96 :EEIDESINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25255 # 1t98A.48.164 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 48 :HDFFKQMHT 1t98A 165 :AEIFDSIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25256 # 1wer.48.292 read from T0287.t06.many.frag # found chain 1wer in training set T0287 48 :HDFFKQMHT 1wer 1006 :SDELRTLSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25257 # 1g5tA.48.108 read from T0287.t06.many.frag # found chain 1g5tA in training set T0287 48 :HDFFKQMHT 1g5tA 109 :WQHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25258 # 1bf5A.48.14 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 48 :HDFFKQMHT 1bf5A 150 :KDKVMCIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25259 # 1nd4A.48.116 read from T0287.t06.many.frag # found chain 1nd4A in template set T0287 48 :HDFFKQMHT 1nd4A 117 :ADAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25260 # 1zx4A.48.72 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1zx4A 214 :CAVGDEMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25261 # 1jixA.48.327 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 48 :HDFFKQMHT 1jixA 328 :HDILNKTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25262 # 1r8iA.48.136 read from T0287.t06.many.frag # found chain 1r8iA in template set Warning: unaligning (T0287)T56 (1r8iA)S169 because T (delta_L) conformation "forbidden" or filtered. T0287 48 :HDFFKQMH 1r8iA 161 :QALTEQIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25263 # 1tukA.48.31 read from T0287.t06.many.frag # found chain 1tukA in template set T0287 48 :HDFFKQMHT 1tukA 32 :QGCFCQYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25264 # 1p4xA.48.111 read from T0287.t06.many.frag # found chain 1p4xA in template set T0287 48 :HDFFKQMHT 1p4xA 112 :DQIIKQFNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25265 # 1fjgT.48.59 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 48 :HDFFKQMHT 1fjgT 60 :ESLIDKAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25266 # 1moq.49.201 read from T0287.t06.many.frag # found chain 1moq in training set T0287 49 :DFFKQMHTN 1moq 442 :SRIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25267 # 1h6kA.49.551 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 49 :DFFKQMHTN 1h6kA 571 :EVFKTLAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=25268 # 1e6iA.49.82 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 49 :DFFKQMHTN 1e6iA 401 :NNCRMYNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25269 # 1hz4A.49.221 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQMH 1hz4A 220 :VIYWQMT T0287 57 :N 1hz4A 228 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=25271 # 1zupA.49.292 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 49 :DFFKQMHTN 1zupA 281 :ENLSYYLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25272 # 1ow4A.49.101 read from T0287.t06.many.frag # found chain 1ow4A in training set T0287 49 :DFFKQMHTN 1ow4A 91 :DCANQVNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25273 # 2acvA.49.437 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 49 :DFFKQMHTN 2acvA 438 :EMSRNAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25274 # 1ail.49.44 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1ail)N53 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1ail 45 :GRGSTL T0287 56 :T 1ail 52 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=25276 # 2f6lA.49.48 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (2f6lA)D90 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQM 2f6lA 82 :EDARSQ T0287 56 :T 2f6lA 89 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=25278 # 1zx4A.49.73 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1zx4A 215 :AVGDEM T0287 56 :TN 1zx4A 222 :NK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25280 # 1w33A.49.74 read from T0287.t06.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1w33A 144 :EILEILKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25281 # 1jqnA.49.39 read from T0287.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1jqnA 40 :KLSKSSRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25282 # 1u0fA.49.226 read from T0287.t06.many.frag # found chain 1u0fA in training set T0287 49 :DFFKQMHTN 1u0fA 226 :EWFLEAAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25283 # 1sdiA.49.93 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 49 :DFFKQMHTN 1sdiA 94 :VLERKLSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25284 # 1nd4A.49.117 read from T0287.t06.many.frag # found chain 1nd4A in template set Warning: unaligning (T0287)N57 (1nd4A)L126 because P (beta_P) conformation "forbidden" or filtered. T0287 49 :DFFKQMHT 1nd4A 118 :DAMRRLHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=25285 # 1wer.49.293 read from T0287.t06.many.frag # found chain 1wer in training set T0287 49 :DFFKQMHTN 1wer 1007 :DELRTLSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25286 # 1jeyA.49.522 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 49 :DFFKQMHTN 1jeyA 523 :DEFKELVYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25287 # 1ajsA.49.313 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 49 :DFFKQMHTN 1ajsA 314 :ELFHEWTGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25288 # 1r71A.49.56 read from T0287.t06.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)H55 (1r71A)G179 because L (left) conformation "forbidden" or filtered. T0287 49 :DFFKQM 1r71A 173 :DIAKEI T0287 56 :TN 1r71A 180 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25290 # 1nt2B.49.85 read from T0287.t06.many.frag # found chain 1nt2B in template set T0287 49 :DFFKQMHTN 1nt2B 97 :EIDESINML Number of specific fragments extracted= 1 number of extra gaps= 0 total=25291 # 1tukA.49.32 read from T0287.t06.many.frag # found chain 1tukA in template set T0287 49 :DFFKQMHTN 1tukA 33 :GCFCQYAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25292 # 1alu.49.125 read from T0287.t06.many.frag # found chain 1alu in template set Warning: unaligning (T0287)H55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1alu)K131 Warning: unaligning (T0287)T56 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1alu)K131 Warning: unaligning (T0287)N57 because of BadResidue code BAD_PEPTIDE in next template residue (1alu)L133 T0287 49 :DFFKQM 1alu 124 :QFLQKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25293 # 1ei6A.49.222 read from T0287.t06.many.frag # found chain 1ei6A in template set T0287 49 :DFFKQMHTN 1ei6A 224 :SYFKRYHEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25294 # 1t98A.49.165 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 49 :DFFKQMHTN 1t98A 166 :EIFDSIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25295 # 1g5tA.49.109 read from T0287.t06.many.frag # found chain 1g5tA in training set T0287 49 :DFFKQMHTN 1g5tA 110 :QHGKRMLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25296 # 1k78A.49.52 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)M54 (1k78A)L58 because G (3-10) conformation "forbidden" or filtered. T0287 49 :DFFKQ 1k78A 53 :DISRQ T0287 55 :HTN 1k78A 59 :RVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25298 # 1mgtA.49.113 read from T0287.t06.many.frag # found chain 1mgtA in training set T0287 49 :DFFKQMHTN 1mgtA 114 :DLAKALNTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25299 # 1jixA.49.328 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 49 :DFFKQMHTN 1jixA 329 :DILNKTRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25300 # 1vjxA.49.59 read from T0287.t06.many.frag # found chain 1vjxA in template set T0287 49 :DFFKQMHTN 1vjxA 48 :EIFRKMSDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25301 # 1cr1A.49.109 read from T0287.t06.many.frag # found chain 1cr1A in template set T0287 49 :DFFKQMHTN 1cr1A 380 :QWFDELFGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25302 # 1moq.50.202 read from T0287.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0287)K58 (1moq)D451 because N (gamma') conformation "forbidden" or filtered. T0287 50 :FFKQMHTN 1moq 443 :RIEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=25303 # 1hz4A.50.222 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1hz4A 221 :IYWQMT T0287 57 :NK 1hz4A 228 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25305 # 1e6iA.50.83 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 50 :FFKQMHTNK 1e6iA 402 :NCRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25306 # 1zupA.50.293 read from T0287.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1zupA 282 :NLSYYLT T0287 58 :K 1zupA 290 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=25308 # 2acvA.50.438 read from T0287.t06.many.frag # found chain 2acvA in template set T0287 50 :FFKQMHTNK 2acvA 439 :MSRNAVVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25309 # 1ow4A.50.102 read from T0287.t06.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1ow4A)Y100 because D (zeta) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1ow4A 92 :CANQVN T0287 57 :N 1ow4A 99 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=25311 # 1h6kA.50.552 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 50 :FFKQMHTNK 1h6kA 572 :VFKTLAESD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25312 # 2f6lA.50.49 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 2f6lA 83 :DARSQ T0287 56 :TNK 2f6lA 89 :IDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25314 # 1w33A.50.75 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 50 :FFKQMHTNK 1w33A 145 :ILEILKKNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25315 # 2cygA.50.57 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 50 :FFKQM 2cygA 86 :DVQSL T0287 57 :NK 2cygA 93 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25317 # 1zx4A.50.74 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 50 :FFKQMHTNK 1zx4A 216 :VGDEMGNKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25318 # 1ail.50.45 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1ail 46 :RGSTL T0287 56 :TNK 1ail 52 :LNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25320 # 1sdiA.50.94 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 50 :FFKQMHTNK 1sdiA 95 :LERKLSSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25321 # 1wer.50.294 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)N57 (1wer)E1015 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1wer 1008 :ELRTLSN T0287 58 :K 1wer 1016 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=25323 # 1u0fA.50.227 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQMH 1u0fA 227 :WFLEAA T0287 57 :NK 1u0fA 234 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25325 # 1z7lA.50.46 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)N57 (1z7lA)D669 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 T0287 50 :FFKQMHT 1z7lA 662 :NVNQYLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=25326 # 1jqnA.50.40 read from T0287.t06.many.frag # found chain 1jqnA in template set T0287 50 :FFKQMHTNK 1jqnA 41 :LSKSSRAGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25327 # 1nd4A.50.118 read from T0287.t06.many.frag # found chain 1nd4A in template set T0287 50 :FFKQMHTNK 1nd4A 119 :AMRRLHTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25328 # 1tukA.50.33 read from T0287.t06.many.frag # found chain 1tukA in template set Warning: unaligning (T0287)F50 (1tukA)C34 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1tukA 35 :FCQYAKDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=25329 # 1jeyA.50.523 read from T0287.t06.many.frag # found chain 1jeyA in template set Warning: unaligning (T0287)N57 (1jeyA)P531 because P (beta_P) conformation "forbidden" or filtered. T0287 50 :FFKQMHT 1jeyA 524 :EFKELVY T0287 58 :K 1jeyA 532 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=25331 # 1k78A.50.53 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1k78A 54 :ISRQL T0287 56 :TNK 1k78A 60 :VSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25333 # 1tu9A.50.11 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 50 :FFKQMHTNK 1tu9A 10 :SYGRCCAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=25334 # 1j2zA.50.212 read from T0287.t06.many.frag # found chain 1j2zA in template set T0287 50 :FFKQMHTNK 1j2zA 213 :LYKRLFRPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25335 # 1sw5B.50.248 read from T0287.t06.many.frag # found chain 1sw5B in template set T0287 50 :FFKQMHTNK 1sw5B 249 :LNYQYDVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25336 # 1r71A.50.57 read from T0287.t06.many.frag # found chain 1r71A in template set Warning: unaligning (T0287)H55 (1r71A)G179 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1r71A 174 :IAKEI T0287 56 :TNK 1r71A 180 :KSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25338 # 1jixA.50.329 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 50 :FFKQMHTNK 1jixA 330 :ILNKTRAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25339 # 1g5tA.50.110 read from T0287.t06.many.frag # found chain 1g5tA in training set T0287 50 :FFKQMHTNK 1g5tA 111 :HGKRMLADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25340 # 1ajsA.50.314 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 50 :FFKQMHTNK 1ajsA 315 :LFHEWTGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25341 # 1mgtA.50.114 read from T0287.t06.many.frag # found chain 1mgtA in training set Warning: unaligning (T0287)H55 (1mgtA)N120 because L (left) conformation "forbidden" or filtered. T0287 50 :FFKQM 1mgtA 115 :LAKAL T0287 56 :TNK 1mgtA 121 :TSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25343 # 2cwyA.50.47 read from T0287.t06.many.frag # found chain 2cwyA in template set T0287 50 :FFKQMHTNK 2cwyA 48 :ALHQRRLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25344 # 1moq.51.203 read from T0287.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0287)K58 (1moq)D451 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1moq 444 :IEQMLSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=25345 # 1hz4A.51.223 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1hz4A 222 :YWQMT T0287 57 :NKG 1hz4A 228 :DKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25347 # 2cygA.51.58 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 51 :FKQM 2cygA 87 :VQSL T0287 57 :NKG 2cygA 93 :NPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25349 # 1wer.51.295 read from T0287.t06.many.frag # found chain 1wer in training set T0287 51 :FKQMHTNKG 1wer 1009 :LRTLSNERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25350 # 1w33A.51.76 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 51 :FKQMHTNKG 1w33A 146 :LEILKKNSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25351 # 2acvA.51.439 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)H55 (2acvA)V444 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQM 2acvA 440 :SRNA T0287 56 :TNKG 2acvA 445 :VDGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25353 # 1e6iA.51.84 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1e6iA 403 :CRMYNGEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=25354 # 1sdiA.51.95 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 51 :FKQMHTNKG 1sdiA 96 :ERKLSSAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25355 # 1zupA.51.294 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 51 :FKQMHTNKG 1zupA 283 :LSYYLTDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25356 # 1z7lA.51.47 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 51 :FKQMHTN 1z7lA 663 :VNQYLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=25357 # 1ow4A.51.103 read from T0287.t06.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1ow4A)Y100 because D (zeta) conformation "forbidden" or filtered. T0287 51 :FKQMH 1ow4A 93 :ANQVN T0287 57 :N 1ow4A 99 :A T0287 59 :G 1ow4A 101 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=25360 # 1zx4A.51.75 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1zx4A 217 :GDEMG T0287 57 :NKG 1zx4A 223 :KNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25362 # 1u0fA.51.228 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQMH 1u0fA 228 :FLEAA T0287 57 :NKG 1u0fA 234 :DPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25364 # 1tu9A.51.12 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1tu9A 11 :YGRCCAS T0287 59 :G 1tu9A 19 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25366 # 1he1A.51.86 read from T0287.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)G59 (1he1A)G189 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHTNK 1he1A 181 :LQQWGTTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25367 # 1h6kA.51.553 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 51 :FKQMHTNKG 1h6kA 573 :FKTLAESDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25368 # 2f6lA.51.50 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 2f6lA 84 :ARSQ T0287 56 :TNKG 2f6lA 89 :IDPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25370 # 1k78A.51.54 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 51 :FKQM 1k78A 55 :SRQL T0287 56 :TNKG 1k78A 60 :VSHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25372 # 1j2zA.51.213 read from T0287.t06.many.frag # found chain 1j2zA in template set T0287 51 :FKQMHTNKG 1j2zA 214 :YKRLFRPIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25373 # 1q79A.51.347 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 51 :FKQMHTNKG 1q79A 348 :TDEILLSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25374 # 1tukA.51.34 read from T0287.t06.many.frag # found chain 1tukA in template set T0287 51 :FKQMHTNKG 1tukA 35 :FCQYAKDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25375 # 1n69A.51.16 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)T56 (1n69A)T20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1n69A)T23 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMH 1n69A 15 :QTAVR T0287 57 :NK 1n69A 21 :NS Number of specific fragments extracted= 2 number of extra gaps= 2 total=25377 # 1ail.51.46 read from T0287.t06.many.frag # found chain 1ail in template set T0287 51 :FKQMHTNKG 1ail 47 :GSTLGLNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25378 # 1ajsA.51.315 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 51 :FKQMHTNKG 1ajsA 316 :FHEWTGNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25379 # 2bmaA.51.35 read from T0287.t06.many.frag # found chain 2bmaA in template set Warning: unaligning (T0287)N57 (2bmaA)N17 because G (3-10) conformation "forbidden" or filtered. T0287 51 :FKQMHT 2bmaA 11 :VMKLDP T0287 58 :KG 2bmaA 18 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25381 # 1jqnA.51.41 read from T0287.t06.many.frag # found chain 1jqnA in template set Warning: unaligning (T0287)N57 (1jqnA)G48 because T (delta_L) conformation "forbidden" or filtered. T0287 51 :FKQMHT 1jqnA 42 :SKSSRA T0287 58 :KG 1jqnA 49 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=25383 # 1sw5B.51.249 read from T0287.t06.many.frag # found chain 1sw5B in template set T0287 51 :FKQMHTNKG 1sw5B 250 :NYQYDVEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25384 # 1jeyA.51.524 read from T0287.t06.many.frag # found chain 1jeyA in template set T0287 51 :FKQMHTNKG 1jeyA 525 :FKELVYPPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25385 # 1z21A.51.62 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 51 :FKQMHTN 1z21A 100 :LQQFDSF T0287 59 :G 1z21A 108 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=25387 # 1jixA.51.330 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 51 :FKQMHTNKG 1jixA 331 :LNKTRAKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25388 # 2cygA.52.59 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 Warning: unaligning (T0287)N57 (2cygA)N93 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQM 2cygA 88 :QSL T0287 58 :KGA 2cygA 94 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25390 # 1sdiA.52.96 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 52 :KQMHTNKGA 1sdiA 97 :RKLSSAKGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25391 # 1hz4A.52.224 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1hz4A 223 :WQMT T0287 57 :NKGA 1hz4A 228 :DKAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25393 # 1wer.52.296 read from T0287.t06.many.frag # found chain 1wer in training set T0287 52 :KQMHTNKGA 1wer 1010 :RTLSNERGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25394 # 1zupA.52.295 read from T0287.t06.many.frag # found chain 1zupA in template set Warning: unaligning (T0287)N57 (1zupA)D289 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHT 1zupA 284 :SYYLT T0287 58 :KGA 1zupA 290 :KNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25396 # 1moq.52.204 read from T0287.t06.many.frag # found chain 1moq in training set T0287 52 :KQMHTNKGA 1moq 445 :EQMLSQDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25397 # 2acvA.52.440 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQMHTN 2acvA 441 :RNAVVD T0287 59 :GA 2acvA 448 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25399 # 1z7lA.52.48 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 52 :KQMHTN 1z7lA 664 :NQYLTD T0287 60 :A 1z7lA 672 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=25401 # 1w33A.52.77 read from T0287.t06.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 52 :KQMHT 1w33A 147 :EILKK T0287 58 :KGA 1w33A 153 :SEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25403 # 1tu9A.52.13 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 52 :KQMHTNKGA 1tu9A 12 :GRCCASTGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25404 # 1e6iA.52.85 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 52 :KQMHTNK 1e6iA 404 :RMYNGEN T0287 60 :A 1e6iA 412 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=25406 # 1he1A.52.87 read from T0287.t06.many.frag # found chain 1he1A in template set T0287 52 :KQMHTNKGA 1he1A 182 :QQWGTTGGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25407 # 1u0fA.52.229 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1u0fA 229 :LEAA T0287 57 :NKGA 1u0fA 234 :DPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25409 # 1zx4A.52.76 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMH 1zx4A 218 :DEMG T0287 57 :NKGA 1zx4A 223 :KNLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25411 # 1k78A.52.55 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 1k78A 56 :RQL T0287 56 :TNKGA 1k78A 60 :VSHGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=25413 # 1q79A.52.348 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 52 :KQMHTNKGA 1q79A 349 :DEILLSKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25414 # 2f6lA.52.51 read from T0287.t06.many.frag # found chain 2f6lA in template set Warning: unaligning (T0287)H55 (2f6lA)H88 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 2f6lA 85 :RSQ T0287 56 :TNKGA 2f6lA 89 :IDPDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25416 # 1fipA.52.78 read from T0287.t06.many.frag # found chain 1fipA in template set T0287 52 :KQMHTNKGA 1fipA 79 :LMMGINRGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25417 # 1sw5B.52.250 read from T0287.t06.many.frag # found chain 1sw5B in template set Warning: unaligning (T0287)K58 (1sw5B)K257 because L (left) conformation "forbidden" or filtered. T0287 52 :KQMHTN 1sw5B 251 :YQYDVE T0287 59 :GA 1sw5B 258 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25419 # 1w9cA.52.195 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 52 :KQMHTNKGA 1w9cA 902 :QNVAQEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25420 # 1y0zA.52.44 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 52 :KQMHTNKGA 1y0zA 45 :QTIKTQKHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25421 # 1n69A.52.17 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 52 :KQMHTNKGA 1n69A 16 :TAVRTNSTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25422 # 1jixA.52.331 read from T0287.t06.many.frag # found chain 1jixA in training set T0287 52 :KQMHTNKGA 1jixA 332 :NKTRAKKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25423 # 1ykjA.52.368 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 52 :KQMHTNKGA 1ykjA 1369 :EYYLGSEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25424 # 2dpmA.52.71 read from T0287.t06.many.frag # found chain 2dpmA in training set Warning: unaligning (T0287)N57 (2dpmA)N77 because D (zeta) conformation "forbidden" or filtered. T0287 52 :KQMHT 2dpmA 72 :QQIKD T0287 58 :KGA 2dpmA 78 :PQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25426 # 1ail.52.47 read from T0287.t06.many.frag # found chain 1ail in template set Warning: unaligning (T0287)H55 (1ail)G51 because L (left) conformation "forbidden" or filtered. T0287 52 :KQM 1ail 48 :STL T0287 56 :TNKGA 1ail 52 :LNIEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25428 # 2a6sA.52.13 read from T0287.t06.many.frag # found chain 2a6sA in template set T0287 52 :KQMHTNKGA 2a6sA 14 :LYWQETDKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25429 # 1h6kA.52.554 read from T0287.t06.many.frag # found chain 1h6kA in template set T0287 52 :KQMHTNKGA 1h6kA 574 :KTLAESDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25430 # 1ow4A.52.104 read from T0287.t06.many.frag # found chain 1ow4A in training set Warning: unaligning (T0287)T56 (1ow4A)G98 because T (delta_L) conformation "forbidden" or filtered. T0287 52 :KQMH 1ow4A 94 :NQVN T0287 57 :NKGA 1ow4A 99 :AYPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25432 # 1t98A.52.168 read from T0287.t06.many.frag # found chain 1t98A in template set T0287 52 :KQMHTNKGA 1t98A 169 :DSIDLTQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25433 # 1sdiA.53.97 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 53 :QMHTNKGAL 1sdiA 98 :KLSSAKGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25434 # 2cygA.53.60 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 53 :QM 2cygA 89 :SL T0287 57 :NKGAL 2cygA 93 :NPSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25436 # 1zupA.53.296 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 53 :QMHTNKGAL 1zupA 285 :YYLTDKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25437 # 1wer.53.297 read from T0287.t06.many.frag # found chain 1wer in training set T0287 53 :QMHTNKGAL 1wer 1011 :TLSNERGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25438 # 1hz4A.53.225 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1hz4A 224 :QMT T0287 57 :NKGAL 1hz4A 228 :DKAAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25440 # 1z7lA.53.49 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 53 :QMHTN 1z7lA 665 :QYLTD T0287 60 :AL 1z7lA 672 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25442 # 1tu9A.53.14 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 53 :QMHTNKGAL 1tu9A 13 :RCCASTGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25443 # 2acvA.53.441 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QMHTN 2acvA 442 :NAVVD T0287 59 :GAL 2acvA 448 :GSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25445 # 1moq.53.205 read from T0287.t06.many.frag # found chain 1moq in training set Warning: unaligning (T0287)G59 (1moq)K452 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMHTNK 1moq 446 :QMLSQD T0287 60 :AL 1moq 453 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25447 # 1w33A.53.78 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 53 :QMHTNKGAL 1w33A 148 :ILKKNSEHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25448 # 1he1A.53.88 read from T0287.t06.many.frag # found chain 1he1A in template set T0287 53 :QMHTNKGAL 1he1A 183 :QWGTTGGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25449 # 1zx4A.53.77 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1zx4A 219 :EMG T0287 57 :NKGAL 1zx4A 223 :KNLEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25451 # 1k78A.53.56 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 53 :QMHTNK 1k78A 57 :QLRVSH T0287 60 :AL 1k78A 64 :CV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25453 # 2f6lA.53.52 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 53 :QMHTNKGAL 2f6lA 86 :SQHIDPDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25454 # 1e6iA.53.86 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 53 :QMHTNK 1e6iA 405 :MYNGEN T0287 60 :AL 1e6iA 412 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25456 # 1u0fA.53.230 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 53 :QMH 1u0fA 230 :EAA T0287 57 :NKGAL 1u0fA 234 :DPSAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25458 # 1ykjA.53.369 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 53 :QMHTNKGAL 1ykjA 1370 :YYLGSEAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25459 # 1y0zA.53.45 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 53 :QMHTNKGAL 1y0zA 46 :TIKTQKHYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25460 # 1urjA.53.604 read from T0287.t06.many.frag # found chain 1urjA in template set Warning: unaligning (T0287)N57 (1urjA)N609 because E (beta_S) conformation "forbidden" or filtered. T0287 53 :QMHT 1urjA 605 :TIIT T0287 58 :KGAL 1urjA 610 :REAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25462 # 2bnxA.53.245 read from T0287.t06.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)G59 (2bnxA)G382 because H (helix) conformation "forbidden" or filtered. T0287 53 :QMHTNK 2bnxA 376 :MEMDDF T0287 60 :AL 2bnxA 383 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25464 # 1w9cA.53.196 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 53 :QMHTNKGAL 1w9cA 903 :NVAQEEAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25465 # 1q79A.53.349 read from T0287.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N57 (1q79A)S354 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1q79A)A356 because Y (epsilon') conformation "forbidden" or filtered. T0287 53 :QMHT 1q79A 350 :EILL T0287 58 :K 1q79A 355 :K T0287 60 :AL 1q79A 357 :EW Number of specific fragments extracted= 3 number of extra gaps= 2 total=25468 # 1fipA.53.79 read from T0287.t06.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 53 :QM 1fipA 80 :MM T0287 56 :TNKGAL 1fipA 83 :INRGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25470 # 1tffA.53.119 read from T0287.t06.many.frag # found chain 1tffA in template set T0287 53 :QMHTNKGAL 1tffA 120 :KVFNDQSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25471 # 1jixA.53.332 read from T0287.t06.many.frag # found chain 1jixA in training set Warning: unaligning (T0287)N57 (1jixA)K337 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMHT 1jixA 333 :KTRA T0287 58 :KGAL 1jixA 338 :KAEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=25473 # 1dk0A.53.138 read from T0287.t06.many.frag # found chain 1dk0A in training set T0287 53 :QMHTNKGAL 1dk0A 139 :LMSGDTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25474 # 1tzvA.53.52 read from T0287.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)N57 (1tzvA)N57 because G (3-10) conformation "forbidden" or filtered. T0287 53 :QMHT 1tzvA 53 :GIKE T0287 58 :KGAL 1tzvA 58 :LSMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25476 # 1b25A.53.375 read from T0287.t06.many.frag # found chain 1b25A in template set T0287 53 :QMHTNKGAL 1b25A 376 :DIAYRKGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25477 # 2dpmA.53.72 read from T0287.t06.many.frag # found chain 2dpmA in training set T0287 53 :QMHTNKGAL 2dpmA 73 :QIKDNPQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25478 # 1z21A.53.64 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 53 :QMHTN 1z21A 102 :QFDSF T0287 59 :GAL 1z21A 108 :KRW Number of specific fragments extracted= 2 number of extra gaps= 1 total=25480 # 1sdiA.54.98 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 54 :MHTNKGALD 1sdiA 99 :LSSAKGALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25481 # 2cygA.54.61 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 54 :M 2cygA 90 :L T0287 57 :NKGALD 2cygA 93 :NPSAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25483 # 1zupA.54.297 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 54 :MHTNKGALD 1zupA 286 :YLTDKNYMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25484 # 1wer.54.298 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)G59 (1wer)G1017 because S (epsilon) conformation "forbidden" or filtered. T0287 54 :MHTNK 1wer 1012 :LSNER T0287 60 :ALD 1wer 1018 :AQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25486 # 1tu9A.54.15 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 54 :MHTNKGALD 1tu9A 14 :CCASTGFFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25487 # 1z7lA.54.50 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 54 :MHTN 1z7lA 666 :YLTD T0287 60 :ALD 1z7lA 672 :FVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25489 # 1hz4A.54.226 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 54 :MHTNKGALD 1hz4A 225 :MTGDKAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25490 # 1zx4A.54.78 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1zx4A 220 :M T0287 57 :NKGALD 1zx4A 223 :KNLEFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25492 # 1k78A.54.57 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 54 :M 1k78A 58 :L T0287 56 :TNKGALD 1k78A 60 :VSHGCVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25494 # 1dk0A.54.139 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1dk0A 140 :MS T0287 57 :NKGALD 1dk0A 143 :DTGALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25496 # 2acvA.54.442 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :MHTN 2acvA 443 :AVVD T0287 59 :GALD 2acvA 448 :GSSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25498 # 1he1A.54.89 read from T0287.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :MHTN 1he1A 184 :WGTT T0287 59 :GALD 1he1A 189 :GAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25500 # 2f6lA.54.53 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 54 :MHTNKGALD 2f6lA 87 :QHIDPDYVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25501 # 1w33A.54.79 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 54 :MHTNKGALD 1w33A 149 :LKKNSEHYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25502 # 1zs4A.54.33 read from T0287.t06.many.frag # found chain 1zs4A in template set T0287 54 :MHTNKGALD 1zs4A 33 :VGVDKSQIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25503 # 2bnxA.54.246 read from T0287.t06.many.frag # found chain 2bnxA in template set T0287 54 :MHTNKGALD 2bnxA 377 :EMDDFGEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25504 # 1y0zA.54.46 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 54 :MHTNKGALD 1y0zA 47 :IKTQKHYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25505 # 1fipA.54.80 read from T0287.t06.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 54 :M 1fipA 81 :M T0287 56 :TNKGALD 1fipA 83 :INRGTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25507 # 1ho8A.54.254 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 54 :MHTNKGALD 1ho8A 253 :LTFNPVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25508 # 1xpjA.54.50 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 54 :MHTNKGALD 1xpjA 51 :MRTYEGNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25509 # 1ykjA.54.370 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 54 :MHTNKGALD 1ykjA 1371 :YLGSEAGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25510 # 1e6iA.54.87 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 54 :MHTNKGALD 1e6iA 406 :YNGENTSYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25511 # 1moq.54.206 read from T0287.t06.many.frag # found chain 1moq in training set T0287 54 :MHTNKGALD 1moq 447 :MLSQDKRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25512 # 1tffA.54.120 read from T0287.t06.many.frag # found chain 1tffA in template set T0287 54 :MHTNKGALD 1tffA 121 :VFNDQSASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25513 # 1cxzB.54.53 read from T0287.t06.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)K58 (1cxzB)L70 because G (3-10) conformation "forbidden" or filtered. T0287 54 :MHTN 1cxzB 66 :LGRS T0287 59 :GALD 1cxzB 71 :GPVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25515 # 1w9cA.54.197 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 54 :MHTNKGALD 1w9cA 904 :VAQEEAAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25516 # 1cg5B.54.90 read from T0287.t06.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)H55 (1cg5B)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N57 (1cg5B)D94 because P (beta_P) conformation "forbidden" or filtered. T0287 54 :M 1cg5B 91 :I T0287 56 :T 1cg5B 93 :V T0287 58 :KGALD 1cg5B 95 :TQNFK Number of specific fragments extracted= 3 number of extra gaps= 2 total=25519 # 1j75A.54.34 read from T0287.t06.many.frag # found chain 1j75A in template set T0287 54 :MHTNKGALD 1j75A 138 :CQVPKKTLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25520 # 1z21A.54.65 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 54 :MHTN 1z21A 103 :FDSF T0287 59 :GALD 1z21A 108 :KRWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25522 # 1u0fA.54.231 read from T0287.t06.many.frag # found chain 1u0fA in training set Warning: unaligning (T0287)T56 (1u0fA)K233 because L (left) conformation "forbidden" or filtered. T0287 54 :MH 1u0fA 231 :AA T0287 57 :NKGALD 1u0fA 234 :DPSAVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25524 # 1sdiA.55.99 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HTN 1sdiA 100 :SSA T0287 59 :GALDK 1sdiA 104 :GALDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25526 # 2cygA.55.62 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)H55 because of BadResidue code BAD_PEPTIDE in next template residue (2cygA)S92 Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDK 2cygA 93 :NPSAAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=25527 # 1tu9A.55.16 read from T0287.t06.many.frag # found chain 1tu9A in training set Warning: unaligning (T0287)K58 (1tu9A)T18 because P (beta_P) conformation "forbidden" or filtered. T0287 55 :HTN 1tu9A 15 :CAS T0287 59 :GALDK 1tu9A 19 :GFFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25529 # 1wer.55.299 read from T0287.t06.many.frag # found chain 1wer in training set T0287 55 :HTNKGALDK 1wer 1013 :SNERGAQQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25530 # 1zupA.55.298 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 55 :HTNKGALDK 1zupA 287 :LTDKNYMNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25531 # 1hz4A.55.227 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 55 :H 1hz4A 226 :T T0287 57 :NKGALDK 1hz4A 228 :DKAAAAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25533 # 1z7lA.55.51 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 55 :HTN 1z7lA 667 :LTD T0287 60 :ALDK 1z7lA 672 :FVER Number of specific fragments extracted= 2 number of extra gaps= 1 total=25535 # 1dk0A.55.140 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1dk0A)T144 because G (3-10) conformation "forbidden" or filtered. T0287 55 :H 1dk0A 141 :S T0287 57 :N 1dk0A 143 :D T0287 59 :GALDK 1dk0A 145 :GALET Number of specific fragments extracted= 3 number of extra gaps= 2 total=25538 # 1zx4A.55.79 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)H55 (1zx4A)G221 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDK 1zx4A 223 :KNLEFDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=25539 # 1k78A.55.58 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)H55 (1k78A)R59 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1k78A 60 :VSHGCVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25540 # 2acvA.55.443 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 2acvA 444 :VVD T0287 59 :GALDK 2acvA 448 :GSSLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25542 # 1zc6A.55.221 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 55 :HTNKGALDK 1zc6A 222 :ARVDPEADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25543 # 2bnxA.55.247 read from T0287.t06.many.frag # found chain 2bnxA in template set Warning: unaligning (T0287)G59 (2bnxA)G382 because H (helix) conformation "forbidden" or filtered. T0287 55 :HTNK 2bnxA 378 :MDDF T0287 60 :ALDK 2bnxA 383 :EVFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25545 # 1he1A.55.90 read from T0287.t06.many.frag # found chain 1he1A in template set Warning: unaligning (T0287)K58 (1he1A)G188 because T (delta_L) conformation "forbidden" or filtered. T0287 55 :HTN 1he1A 185 :GTT T0287 59 :GALDK 1he1A 189 :GAASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25547 # 1e6iA.55.88 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 55 :HTNKGALDK 1e6iA 407 :NGENTSYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25548 # 1cxzB.55.54 read from T0287.t06.many.frag # found chain 1cxzB in template set Warning: unaligning (T0287)H55 (1cxzB)G67 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1cxzB 68 :RSLGPVEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25549 # 1xpjA.55.51 read from T0287.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 55 :HTN 1xpjA 52 :RTY T0287 59 :GALDK 1xpjA 56 :GNVGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25551 # 1cg5B.55.91 read from T0287.t06.many.frag # found chain 1cg5B in training set Warning: unaligning (T0287)H55 (1cg5B)G92 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1cg5B 93 :VDTQNFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25552 # 1zs4A.55.34 read from T0287.t06.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)H55 (1zs4A)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1zs4A 35 :VDKSQISR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25553 # 1tffA.55.121 read from T0287.t06.many.frag # found chain 1tffA in template set T0287 55 :HTNKGALDK 1tffA 122 :FNDQSASDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25554 # 2f6lA.55.54 read from T0287.t06.many.frag # found chain 2f6lA in template set T0287 55 :HTNKGALDK 2f6lA 88 :HIDPDYVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25555 # 1y6xA.55.34 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 55 :HTNKGALDK 1y6xA 35 :DGGVHALGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25556 # 1j75A.55.35 read from T0287.t06.many.frag # found chain 1j75A in template set Warning: unaligning (T0287)H55 (1j75A)Q139 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1j75A 140 :VPKKTLNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=25557 # 1w33A.55.80 read from T0287.t06.many.frag # found chain 1w33A in template set Warning: unaligning (T0287)N57 (1w33A)N152 because E (beta_S) conformation "forbidden" or filtered. T0287 55 :HT 1w33A 150 :KK T0287 58 :KGALDK 1w33A 153 :SEHYNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25559 # 1ho8A.55.255 read from T0287.t06.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N57 (1ho8A)N256 because D (zeta) conformation "forbidden" or filtered. T0287 55 :HT 1ho8A 254 :TF T0287 58 :KGALDK 1ho8A 257 :PVFANE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25561 # 1ykjA.55.371 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 55 :HTNKGALDK 1ykjA 1372 :LGSEAGLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25562 # 1urjA.55.606 read from T0287.t06.many.frag # found chain 1urjA in template set T0287 55 :HTNKGALDK 1urjA 607 :ITNREALHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25563 # 1z21A.55.66 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 55 :HTN 1z21A 104 :DSF T0287 59 :GALDK 1z21A 108 :KRWEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25565 # 1fipA.55.81 read from T0287.t06.many.frag # found chain 1fipA in template set Warning: unaligning (T0287)H55 (1fipA)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1fipA 83 :INRGTLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25566 # 1ikpA.55.301 read from T0287.t06.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)H55 (1ikpA)R302 because L (left) conformation "forbidden" or filtered. T0287 56 :TNKGALDK 1ikpA 303 :LSWNQVDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=25567 # 1sdiA.56.100 read from T0287.t06.many.frag # found chain 1sdiA in training set Warning: unaligning (T0287)K58 (1sdiA)K103 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TN 1sdiA 101 :SA T0287 59 :GALDKV 1sdiA 104 :GALDTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25569 # 1tu9A.56.17 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 56 :TNKGALDKV 1tu9A 16 :ASTGFFDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25570 # 2cygA.56.63 read from T0287.t06.many.frag # found chain 2cygA in template set Warning: unaligning (T0287)T56 because of BadResidue code BAD_PEPTIDE at template residue (2cygA)S92 T0287 57 :NKGALDKV 2cygA 93 :NPSAAGDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=25571 # 1wer.56.300 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1wer)G1017 because S (epsilon) conformation "forbidden" or filtered. T0287 56 :TN 1wer 1014 :NE T0287 60 :ALDKV 1wer 1018 :AQQHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25573 # 1dk0A.56.141 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)T56 (1dk0A)G142 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1dk0A 143 :DTGALETA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25574 # 1zc6A.56.222 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 56 :TNKGALDKV 1zc6A 223 :RVDPEADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25575 # 1zupA.56.299 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 56 :TNKGALDKV 1zupA 288 :TDKNYMNTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25576 # 1xpjA.56.52 read from T0287.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)N57 (1xpjA)Y54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 56 :T 1xpjA 53 :T T0287 59 :GALDKV 1xpjA 56 :GNVGKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25578 # 1hz4A.56.228 read from T0287.t06.many.frag # found chain 1hz4A in training set Warning: unaligning (T0287)T56 (1hz4A)G227 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1hz4A 228 :DKAAAANW Number of specific fragments extracted= 1 number of extra gaps= 1 total=25579 # 1ikpA.56.302 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 56 :TNKGALDKV 1ikpA 303 :LSWNQVDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25580 # 1k78A.56.59 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 56 :TNK 1k78A 60 :VSH T0287 60 :ALDKV 1k78A 64 :CVSKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25582 # 2bnxA.56.248 read from T0287.t06.many.frag # found chain 2bnxA in template set T0287 56 :TNKGALDKV 2bnxA 379 :DDFGEVFQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25583 # 1z7lA.56.52 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 56 :TN 1z7lA 668 :TD T0287 60 :ALDKV 1z7lA 672 :FVERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25585 # 1zx4A.56.80 read from T0287.t06.many.frag # found chain 1zx4A in template set Warning: unaligning (T0287)T56 (1zx4A)N222 because L (left) conformation "forbidden" or filtered. T0287 57 :NKGALDKV 1zx4A 223 :KNLEFDQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25586 # 1q2lA.56.840 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TNKG 1q2lA 864 :QAPQ T0287 61 :LDKV 1q2lA 869 :LGEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25588 # 1cxzB.56.55 read from T0287.t06.many.frag # found chain 1cxzB in template set T0287 56 :TNKGALDKV 1cxzB 68 :RSLGPVELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25589 # 1y6xA.56.35 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 56 :TNKGALDKV 1y6xA 36 :GGVHALGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25590 # 1j75A.56.36 read from T0287.t06.many.frag # found chain 1j75A in template set T0287 56 :TNKGALDKV 1j75A 140 :VPKKTLNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25591 # 1zs4A.56.35 read from T0287.t06.many.frag # found chain 1zs4A in template set T0287 56 :TNKGALDKV 1zs4A 35 :VDKSQISRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25592 # 1ykjA.56.372 read from T0287.t06.many.frag # found chain 1ykjA in template set Warning: unaligning (T0287)N57 (1ykjA)S1374 because E (beta_S) conformation "forbidden" or filtered. T0287 56 :T 1ykjA 1373 :G T0287 58 :KGALDKV 1ykjA 1375 :EAGLATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25594 # 1tzvA.56.55 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 56 :TNKGALDKV 1tzvA 56 :ENLSMIDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25595 # 1e6iA.56.89 read from T0287.t06.many.frag # found chain 1e6iA in template set T0287 56 :TNKGALDKV 1e6iA 408 :GENTSYYKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25596 # 1cg5B.56.92 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 56 :TNKGALDKV 1cg5B 93 :VDTQNFKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25597 # 2acvA.56.444 read from T0287.t06.many.frag # found chain 2acvA in template set Warning: unaligning (T0287)K58 (2acvA)G447 because T (delta_L) conformation "forbidden" or filtered. T0287 56 :TN 2acvA 445 :VD T0287 59 :GALDKV 2acvA 448 :GSSLIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25599 # 1he1A.56.91 read from T0287.t06.many.frag # found chain 1he1A in template set T0287 56 :TNKGALDKV 1he1A 186 :TTGGAASQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25600 # 2aqlA.56.58 read from T0287.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKV 2aqlA 212 :YAVNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25601 # 1tffA.56.122 read from T0287.t06.many.frag # found chain 1tffA in template set T0287 56 :TNKGALDKV 1tffA 123 :NDQSASDHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25602 # 1z21A.56.67 read from T0287.t06.many.frag # found chain 1z21A in template set Warning: unaligning (T0287)K58 (1z21A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0287 56 :TN 1z21A 105 :SF T0287 59 :GALDKV 1z21A 108 :KRWEAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25604 # 1qoyA.56.216 read from T0287.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0287)K58 (1qoyA)E204 because P (beta_P) conformation "forbidden" or filtered. T0287 56 :TN 1qoyA 202 :VV T0287 59 :GALDKV 1qoyA 205 :GKLIPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25606 # 1w33A.56.81 read from T0287.t06.many.frag # found chain 1w33A in template set T0287 56 :TNKGALDKV 1w33A 151 :KNSEHYNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25607 # 1tu9A.57.18 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 57 :NKGALDKVL 1tu9A 17 :STGFFDDFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25608 # 1zc6A.57.223 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 57 :NKGALDKVL 1zc6A 224 :VDPEADALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25609 # 1ikpA.57.303 read from T0287.t06.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)N57 (1ikpA)S304 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1ikpA 305 :WNQVDQVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25610 # 2cygA.57.64 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 57 :NKGALDKVL 2cygA 93 :NPSAAGDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25611 # 1xpjA.57.53 read from T0287.t06.many.frag # found chain 1xpjA in template set Warning: unaligning (T0287)K58 (1xpjA)E55 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1xpjA 54 :Y T0287 59 :GALDKVL 1xpjA 56 :GNVGKIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25613 # 1dk0A.57.142 read from T0287.t06.many.frag # found chain 1dk0A in training set T0287 57 :NKGALDKVL 1dk0A 143 :DTGALETAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25614 # 1sdiA.57.101 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 57 :NKGALDKVL 1sdiA 102 :AKGALDTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25615 # 1wer.57.301 read from T0287.t06.many.frag # found chain 1wer in training set T0287 57 :NKGALDKVL 1wer 1015 :ERGAQQHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25616 # 1zx4A.57.81 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 57 :NKGALDKVL 1zx4A 223 :KNLEFDQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25617 # 2aqlA.57.59 read from T0287.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)N57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2aqlA)E211 Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVL 2aqlA 212 :YAVNEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25618 # 1q2lA.57.841 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)K58 (1q2lA)P866 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 57 :N 1q2lA 865 :A T0287 59 :G 1q2lA 867 :Q T0287 61 :LDKVL 1q2lA 869 :LGEEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=25621 # 1y6xA.57.36 read from T0287.t06.many.frag # found chain 1y6xA in training set Warning: unaligning (T0287)N57 (1y6xA)G37 because S (epsilon) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1y6xA 38 :VHALGKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25622 # 1hz4A.57.229 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 57 :NKGALDKVL 1hz4A 228 :DKAAAANWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25623 # 1k78A.57.60 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)N57 (1k78A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1k78A 62 :HGCVSKIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25624 # 1ykjA.57.373 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 57 :NKGALDKVL 1ykjA 1374 :SEAGLATIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25625 # 1z7lA.57.53 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 57 :N 1z7lA 669 :D T0287 60 :ALDKVL 1z7lA 672 :FVERTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25627 # 1tzvA.57.56 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 57 :NKGALDKVL 1tzvA 57 :NLSMIDDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25628 # 1cxzB.57.56 read from T0287.t06.many.frag # found chain 1cxzB in template set T0287 57 :NKGALDKVL 1cxzB 69 :SLGPVELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25629 # 1zupA.57.300 read from T0287.t06.many.frag # found chain 1zupA in template set T0287 57 :NKGALDKVL 1zupA 289 :DKNYMNTRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25630 # 1j75A.57.37 read from T0287.t06.many.frag # found chain 1j75A in template set T0287 57 :NKGALDKVL 1j75A 141 :PKKTLNQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25631 # 1qoyA.57.217 read from T0287.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0287)K58 (1qoyA)E204 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :N 1qoyA 203 :V T0287 59 :GALDKVL 1qoyA 205 :GKLIPEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25633 # 1mw9X.57.555 read from T0287.t06.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)N57 (1mw9X)H556 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1mw9X)A558 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :K 1mw9X 557 :E T0287 60 :ALDKVL 1mw9X 559 :EWKAVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=25635 # 2bnxA.57.249 read from T0287.t06.many.frag # found chain 2bnxA in template set T0287 57 :NKGALDKVL 2bnxA 380 :DFGEVFQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25636 # 1zs4A.57.36 read from T0287.t06.many.frag # found chain 1zs4A in template set Warning: unaligning (T0287)N57 (1zs4A)D36 because P (beta_P) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1zs4A 37 :KSQISRWK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25637 # 1cg5B.57.93 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 57 :NKGALDKVL 1cg5B 94 :DTQNFKLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25638 # 1e6iA.57.90 read from T0287.t06.many.frag # found chain 1e6iA in template set Warning: unaligning (T0287)G59 (1e6iA)T411 because P (beta_P) conformation "forbidden" or filtered. T0287 57 :NK 1e6iA 409 :EN T0287 60 :ALDKVL 1e6iA 412 :SYYKYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25640 # 1zk8A.57.107 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 57 :NKGALDKVL 1zk8A 108 :RDEEVRKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25641 # 1g3kA.57.66 read from T0287.t06.many.frag # found chain 1g3kA in template set Warning: unaligning (T0287)K58 (1g3kA)Q68 because L (left) conformation "forbidden" or filtered. T0287 57 :N 1g3kA 67 :H T0287 59 :GALDKVL 1g3kA 69 :GHLLKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25643 # 1zpyA.57.73 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 57 :NKGALDKVL 1zpyA 74 :CDPAFDKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25644 # 1ho8A.57.257 read from T0287.t06.many.frag # found chain 1ho8A in template set Warning: unaligning (T0287)N57 (1ho8A)N256 because D (zeta) conformation "forbidden" or filtered. T0287 58 :KGALDKVL 1ho8A 257 :PVFANELV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25645 # 1zc6A.58.224 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 58 :KGALDKVLR 1zc6A 225 :DPEADALLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25646 # 1tu9A.58.19 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 58 :KGALDKVLR 1tu9A 18 :TGFFDDFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25647 # 1xpjA.58.54 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 58 :KGALDKVLR 1xpjA 55 :EGNVGKINI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25648 # 1y6xA.58.37 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 58 :KGALDKVLR 1y6xA 38 :VHALGKKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25649 # 1ikpA.58.304 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 58 :KGALDKVLR 1ikpA 305 :WNQVDQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25650 # 1dk0A.58.143 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)G59 (1dk0A)G145 because H (helix) conformation "forbidden" or filtered. T0287 58 :K 1dk0A 144 :T T0287 60 :ALDKVLR 1dk0A 146 :ALETALN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25652 # 2aqlA.58.60 read from T0287.t06.many.frag # found chain 2aqlA in template set Warning: unaligning (T0287)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2aqlA)E211 T0287 59 :GALDKVLR 2aqlA 212 :YAVNEVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25653 # 1q2lA.58.842 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)G59 (1q2lA)Q867 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 58 :K 1q2lA 866 :P T0287 61 :LDKVLR 1q2lA 869 :LGEEAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25655 # 2cygA.58.65 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 58 :KGALDKVLR 2cygA 94 :PSAAGDWIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25656 # 1tzvA.58.57 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 58 :KGALDKVLR 1tzvA 58 :LSMIDDLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25657 # 2f5xA.58.285 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 58 :KGALDKVLR 2f5xA 274 :PEALQAKVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25658 # 1qoyA.58.218 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 58 :KGALDKVLR 1qoyA 204 :EGKLIPELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25659 # 1zx4A.58.82 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 58 :KGALDKVLR 1zx4A 224 :NLEFDQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25660 # 1zk8A.58.108 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 58 :KGALDKVLR 1zk8A 109 :DEEVRKAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25661 # 1hz4A.58.230 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 58 :KGALDKVLR 1hz4A 229 :KAAAANWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25662 # 1p4cA.58.318 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 58 :KGALDKVLR 1p4cA 319 :ETGVDEVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25663 # 1wer.58.302 read from T0287.t06.many.frag # found chain 1wer in training set Warning: unaligning (T0287)K58 (1wer)R1016 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G59 (1wer)G1017 because S (epsilon) conformation "forbidden" or filtered. T0287 60 :ALDKVLR 1wer 1018 :AQQHVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25664 # 1mw9X.58.556 read from T0287.t06.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)G59 (1mw9X)A558 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)A60 (1mw9X)E559 because E (beta_S) conformation "forbidden" or filtered. T0287 58 :K 1mw9X 557 :E T0287 61 :LDKVLR 1mw9X 560 :WKAVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25666 # 1po5A.58.119 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 58 :KGALDKVLR 1po5A 139 :KRSVEERIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25667 # 1zpyA.58.74 read from T0287.t06.many.frag # found chain 1zpyA in template set T0287 58 :KGALDKVLR 1zpyA 75 :DPAFDKELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25668 # 1j75A.58.38 read from T0287.t06.many.frag # found chain 1j75A in template set T0287 58 :KGALDKVLR 1j75A 142 :KKTLNQVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25669 # 1z7lA.58.54 read from T0287.t06.many.frag # found chain 1z7lA in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1z7lA)K671 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1z7lA)K671 T0287 60 :ALDKVLR 1z7lA 672 :FVERTLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25670 # 1k78A.58.61 read from T0287.t06.many.frag # found chain 1k78A in template set Warning: unaligning (T0287)G59 (1k78A)G63 because H (helix) conformation "forbidden" or filtered. T0287 58 :K 1k78A 62 :H T0287 60 :ALDKVLR 1k78A 64 :CVSKILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25672 # 1fjgT.58.73 read from T0287.t06.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)K58 because of BadResidue code BAD_PEPTIDE in next template residue (1fjgT)N75 Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLR 1fjgT 76 :AAARRKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=25673 # 1ykjA.58.374 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 58 :KGALDKVLR 1ykjA 1375 :EAGLATIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25674 # 1ho8A.58.258 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 58 :KGALDKVLR 1ho8A 257 :PVFANELVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25675 # 1zs4A.58.37 read from T0287.t06.many.frag # found chain 1zs4A in template set T0287 58 :KGALDKVLR 1zs4A 37 :KSQISRWKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25676 # 1sdiA.58.102 read from T0287.t06.many.frag # found chain 1sdiA in training set T0287 58 :KGALDKVLR 1sdiA 103 :KGALDTLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25677 # 1cg5B.58.94 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 58 :KGALDKVLR 1cg5B 95 :TQNFKLLGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25678 # 1cxzB.58.57 read from T0287.t06.many.frag # found chain 1cxzB in template set T0287 58 :KGALDKVLR 1cxzB 70 :LGPVELLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25679 # 1zc6A.59.225 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 59 :GALDKVLRN 1zc6A 226 :PEADALLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25680 # 1tu9A.59.20 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 59 :GALDKVLRN 1tu9A 19 :GFFDDFYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25681 # 1y6xA.59.38 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 59 :GALDKVLRN 1y6xA 39 :HALGKKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25682 # 1ikpA.59.305 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 59 :GALDKVLRN 1ikpA 306 :NQVDQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25683 # 2f5xA.59.286 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 59 :GALDKVLRN 2f5xA 275 :EALQAKVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25684 # 1xpjA.59.55 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 59 :GALDKVLRN 1xpjA 56 :GNVGKINIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25685 # 1zx4A.59.83 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 59 :GALDKVLRN 1zx4A 225 :LEFDQLIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25686 # 1p4cA.59.319 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 59 :GALDKVLRN 1p4cA 320 :TGVDEVLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25687 # 1zk8A.59.109 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 59 :GALDKVLRN 1zk8A 110 :EEVRKAGDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25688 # 2aqlA.59.61 read from T0287.t06.many.frag # found chain 2aqlA in template set T0287 59 :GALDKVLRN 2aqlA 212 :YAVNEVVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25689 # 1mw9X.59.557 read from T0287.t06.many.frag # found chain 1mw9X in training set Warning: unaligning (T0287)G59 (1mw9X)A558 because Y (epsilon') conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1mw9X 559 :EWKAVLDH Number of specific fragments extracted= 1 number of extra gaps= 1 total=25690 # 1tzvA.59.58 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 59 :GALDKVLRN 1tzvA 59 :SMIDDLISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25691 # 1ho8A.59.259 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 59 :GALDKVLRN 1ho8A 258 :VFANELVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25692 # 1q2lA.59.843 read from T0287.t06.many.frag # found chain 1q2lA in template set Warning: unaligning (T0287)A60 (1q2lA)T868 because Y (epsilon') conformation "forbidden" or filtered. T0287 59 :G 1q2lA 867 :Q T0287 61 :LDKVLRN 1q2lA 869 :LGEEASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25694 # 1fjgT.59.74 read from T0287.t06.many.frag # found chain 1fjgT in template set Warning: unaligning (T0287)G59 because of BadResidue code BAD_PEPTIDE at template residue (1fjgT)N75 T0287 60 :ALDKVLRN 1fjgT 76 :AAARRKSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25695 # 2cygA.59.66 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 59 :GALDKVLRN 2cygA 95 :SAAGDWIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25696 # 1or7A.59.46 read from T0287.t06.many.frag # found chain 1or7A in template set Warning: unaligning (T0287)G59 (1or7A)G44 because H (helix) conformation "forbidden" or filtered. T0287 60 :ALDKVLRN 1or7A 45 :DVPDVVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=25697 # 1dk0A.59.144 read from T0287.t06.many.frag # found chain 1dk0A in training set T0287 59 :GALDKVLRN 1dk0A 145 :GALETALNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25698 # 1h6pA.59.129 read from T0287.t06.many.frag # found chain 1h6pA in template set T0287 59 :GALDKVLRN 1h6pA 172 :EKASKILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25699 # 1qoyA.59.219 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 59 :GALDKVLRN 1qoyA 205 :GKLIPELKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25700 # 1po5A.59.120 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 59 :GALDKVLRN 1po5A 140 :RSVEERIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25701 # 1a6m.59.128 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 59 :GALDKVLRN 1a6m 129 :GAMNKALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25702 # 1hz4A.59.231 read from T0287.t06.many.frag # found chain 1hz4A in training set T0287 59 :GALDKVLRN 1hz4A 230 :AAAANWLRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25703 # 1jk0B.59.240 read from T0287.t06.many.frag # found chain 1jk0B in template set T0287 59 :GALDKVLRN 1jk0B 241 :KIIEKIITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25704 # 1ykjA.59.375 read from T0287.t06.many.frag # found chain 1ykjA in template set T0287 59 :GALDKVLRN 1ykjA 1376 :AGLATIAEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25705 # 1xp8A.59.179 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 59 :GALDKVLRN 1xp8A 177 :GLQARLMSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25706 # 1cg5B.59.95 read from T0287.t06.many.frag # found chain 1cg5B in training set T0287 59 :GALDKVLRN 1cg5B 96 :QNFKLLGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25707 # 1dlwA.59.71 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 59 :GALDKVLRN 1dlwA 72 :GVSNAQFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25708 # 1psrA.59.28 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 59 :GALDKVLRN 1psrA 29 :PSLLTMMKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25709 # 1wa5C.59.393 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 59 :GALDKVLRN 1wa5C 394 :VLVTNIFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25710 # 1zc6A.60.226 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 60 :ALDKVLRNY 1zc6A 227 :EADALLRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25711 # 2f5xA.60.287 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 60 :ALDKVLRNY 2f5xA 276 :ALQAKVKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25712 # 1y6xA.60.39 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 60 :ALDKVLRNY 1y6xA 40 :ALGKKLLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25713 # 1mw9X.60.558 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 60 :ALDKVLRNY 1mw9X 559 :EWKAVLDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25714 # 1tu9A.60.21 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 60 :ALDKVLRNY 1tu9A 20 :FFDDFYRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25715 # 1tzvA.60.59 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 60 :ALDKVLRNY 1tzvA 60 :MIDDLISRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25716 # 1p4cA.60.320 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 60 :ALDKVLRNY 1p4cA 321 :GVDEVLTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25717 # 1zk8A.60.110 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 60 :ALDKVLRNY 1zk8A 111 :EVRKAGDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25718 # 1ikpA.60.306 read from T0287.t06.many.frag # found chain 1ikpA in training set Warning: unaligning (T0287)A60 (1ikpA)Q307 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1ikpA 308 :VDQVIRNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25719 # 1qoyA.60.220 read from T0287.t06.many.frag # found chain 1qoyA in template set Warning: unaligning (T0287)A60 (1qoyA)K206 because G (3-10) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1qoyA 207 :LIPELKNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25720 # 1h6pA.60.130 read from T0287.t06.many.frag # found chain 1h6pA in template set T0287 60 :ALDKVLRNY 1h6pA 173 :KASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25721 # 2aqlA.60.62 read from T0287.t06.many.frag # found chain 2aqlA in template set T0287 60 :ALDKVLRNY 2aqlA 213 :AVNEVVAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25722 # 1ho8A.60.260 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 60 :ALDKVLRNY 1ho8A 259 :FANELVQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25723 # 1fjgT.60.75 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 60 :ALDKVLRNY 1fjgT 76 :AAARRKSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25724 # 1psrA.60.29 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 60 :ALDKVLRNY 1psrA 30 :SLLTMMKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25725 # 1wa5C.60.394 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 60 :ALDKVLRNY 1wa5C 395 :LVTNIFLAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25726 # 1xp8A.60.180 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 60 :ALDKVLRNY 1xp8A 178 :LQARLMSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25727 # 1bgf.60.100 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 60 :ALDKVLRNY 1bgf 100 :HVAVVISNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25728 # 1xpjA.60.56 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 60 :ALDKVLRNY 1xpjA 57 :NVGKINIHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25729 # 1q2lA.60.844 read from T0287.t06.many.frag # found chain 1q2lA in template set T0287 60 :ALDKVLRNY 1q2lA 868 :TLGEEASKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25730 # 1a6m.60.129 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 60 :ALDKVLRNY 1a6m 130 :AMNKALELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25731 # 1po5A.60.121 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 60 :ALDKVLRNY 1po5A 141 :SVEERIQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25732 # 1or7A.60.47 read from T0287.t06.many.frag # found chain 1or7A in template set T0287 60 :ALDKVLRNY 1or7A 45 :DVPDVVQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25733 # 1dk0A.60.145 read from T0287.t06.many.frag # found chain 1dk0A in training set Warning: unaligning (T0287)Y68 because of BadResidue code BAD_PEPTIDE in next template residue (1dk0A)L155 T0287 60 :ALDKVLRN 1dk0A 146 :ALETALNG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25734 # 1zx4A.60.84 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 60 :ALDKVLRNY 1zx4A 226 :EFDQLIQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25735 # 1txjA.60.85 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 60 :ALDKVLRNY 1txjA 86 :EYSVYIKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25736 # 2cygA.60.67 read from T0287.t06.many.frag # found chain 2cygA in template set T0287 60 :ALDKVLRNY 2cygA 96 :AAGDWIRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25737 # 1jk0B.60.241 read from T0287.t06.many.frag # found chain 1jk0B in template set T0287 60 :ALDKVLRNY 1jk0B 242 :IIEKIITEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25738 # 1cfr.60.33 read from T0287.t06.many.frag # found chain 1cfr in template set Warning: unaligning (T0287)A60 (1cfr)E34 because P (beta_P) conformation "forbidden" or filtered. T0287 61 :LDKVLRNY 1cfr 35 :FSKVLSGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25739 # 2bnlA.60.82 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 60 :ALDKVLRNY 2bnlA 83 :FLATALAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25740 # 1zc6A.61.227 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 61 :LDKVLRNYM 1zc6A 228 :ADALLRQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25741 # 2f5xA.61.288 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 61 :LDKVLRNYM 2f5xA 277 :LQAKVKQQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25742 # 1mw9X.61.559 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 61 :LDKVLRNYM 1mw9X 560 :WKAVLDHFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25743 # 1tu9A.61.22 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 61 :LDKVLRNYM 1tu9A 21 :FDDFYRHFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25744 # 1p4cA.61.321 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 61 :LDKVLRNYM 1p4cA 322 :VDEVLTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25745 # 1y6xA.61.40 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 61 :LDKVLRNYM 1y6xA 41 :LGKKLLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25746 # 1qoyA.61.221 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 61 :LDKVLRNYM 1qoyA 207 :LIPELKNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25747 # 1zk8A.61.111 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 61 :LDKVLRNYM 1zk8A 112 :VRKAGDGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25748 # 1bgf.61.101 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 61 :LDKVLRNYM 1bgf 101 :VAVVISNCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25749 # 1txjA.61.86 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 61 :LDKVLRNYM 1txjA 87 :YSVYIKNYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25750 # 1fjgT.61.76 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 61 :LDKVLRNYM 1fjgT 77 :AARRKSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25751 # 1tzvA.61.60 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 61 :LDKVLRNYM 1tzvA 61 :IDDLISRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25752 # 1h6pA.61.131 read from T0287.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 61 :LDKVLRNY 1h6pA 174 :ASKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25753 # 1psrA.61.30 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 61 :LDKVLRNYM 1psrA 31 :LLTMMKENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25754 # 1wa5C.61.395 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 61 :LDKVLRNYM 1wa5C 396 :VTNIFLAHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25755 # 1xp8A.61.181 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 61 :LDKVLRNYM 1xp8A 179 :QARLMSQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25756 # 1ho8A.61.261 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 61 :LDKVLRNYM 1ho8A 260 :ANELVQKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25757 # 1ikpA.61.307 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 61 :LDKVLRNYM 1ikpA 308 :VDQVIRNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25758 # 1a6m.61.130 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 61 :LDKVLRNYM 1a6m 131 :MNKALELFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25759 # 1or7A.61.48 read from T0287.t06.many.frag # found chain 1or7A in template set T0287 61 :LDKVLRNYM 1or7A 46 :VPDVVQEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25760 # 1sz9A.61.66 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 61 :LDKVLRNYM 1sz9A 67 :LDSICKNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25761 # 2aqlA.61.63 read from T0287.t06.many.frag # found chain 2aqlA in template set T0287 61 :LDKVLRNYM 2aqlA 214 :VNEVVAGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25762 # 1cfr.61.34 read from T0287.t06.many.frag # found chain 1cfr in template set T0287 61 :LDKVLRNYM 1cfr 35 :FSKVLSGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25763 # 1zx4A.61.85 read from T0287.t06.many.frag # found chain 1zx4A in template set T0287 61 :LDKVLRNYM 1zx4A 227 :FDQLIQNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25764 # 2bnlA.61.83 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 61 :LDKVLRNYM 2bnlA 84 :LATALAEFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25765 # 1jk0B.61.242 read from T0287.t06.many.frag # found chain 1jk0B in template set T0287 61 :LDKVLRNYM 1jk0B 243 :IEKIITEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25766 # 1q2lA.61.845 read from T0287.t06.many.frag # found chain 1q2lA in template set T0287 61 :LDKVLRNYM 1q2lA 869 :LGEEASKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25767 # 2au5A.61.84 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 61 :LDKVLRNYM 2au5A 82 :LKGELARLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25768 # 1xpjA.61.57 read from T0287.t06.many.frag # found chain 1xpjA in template set T0287 61 :LDKVLRNYM 1xpjA 58 :VGKINIHTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25769 # 1hs6A.61.424 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 61 :LDKVLRNYM 1hs6A 424 :WKDFLYSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25770 # 1zc6A.62.228 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 62 :DKVLRNYMK 1zc6A 229 :DALLRQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25771 # 2f5xA.62.289 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 62 :DKVLRNYMK 2f5xA 278 :QAKVKQQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25772 # 1bgf.62.102 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 62 :DKVLRNYMK 1bgf 102 :AVVISNCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25773 # 1qoyA.62.222 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 62 :DKVLRNYMK 1qoyA 208 :IPELKNKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25774 # 1txjA.62.87 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 62 :DKVLRNYMK 1txjA 88 :SVYIKNYMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25775 # 1mw9X.62.560 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 62 :DKVLRNYMK 1mw9X 561 :KAVLDHFFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25776 # 1wa5C.62.396 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 62 :DKVLRNYMK 1wa5C 397 :TNIFLAHMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25777 # 1tu9A.62.23 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 62 :DKVLRNYMK 1tu9A 22 :DDFYRHFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25778 # 1tzvA.62.61 read from T0287.t06.many.frag # found chain 1tzvA in training set Warning: unaligning (T0287)Y68 (1tzvA)Y68 because G (3-10) conformation "forbidden" or filtered. T0287 62 :DKVLRN 1tzvA 62 :DDLISR T0287 69 :MK 1tzvA 69 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25780 # 1psrA.62.31 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 62 :DKVLRNYMK 1psrA 32 :LTMMKENFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25781 # 1y6xA.62.41 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 62 :DKVLRNYMK 1y6xA 42 :GKKLLEEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25782 # 1fjgT.62.77 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 62 :DKVLRNYMK 1fjgT 78 :ARRKSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25783 # 1xp8A.62.182 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 62 :DKVLRNYMK 1xp8A 180 :ARLMSQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25784 # 1hs6A.62.425 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 62 :DKVLRNYMK 1hs6A 425 :KDFLYSYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25785 # 1zk8A.62.112 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 62 :DKVLRNYMK 1zk8A 113 :RKAGDGIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25786 # 1h6pA.62.132 read from T0287.t06.many.frag # found chain 1h6pA in template set Warning: unaligning (T0287)M69 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0287 62 :DKVLRNY 1h6pA 175 :SKILKKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25787 # 1sz9A.62.67 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)K70 (1sz9A)S76 because P (beta_P) conformation "forbidden" or filtered. T0287 62 :DKVLRNYM 1sz9A 68 :DSICKNVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25788 # 1p4cA.62.322 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 62 :DKVLRNYMK 1p4cA 323 :DEVLTLLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25789 # 1ho8A.62.262 read from T0287.t06.many.frag # found chain 1ho8A in template set T0287 62 :DKVLRNYMK 1ho8A 261 :NELVQKYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25790 # 2au5A.62.85 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 62 :DKVLRNYMK 2au5A 83 :KGELARLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25791 # 1j5wA.62.221 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 62 :DKVLRNYMK 1j5wA 210 :FRHFDEYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25792 # 1ytaA.62.111 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 62 :DKVLRNYMK 1ytaA 112 :RRFLFKYMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25793 # 2mhr.62.47 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 62 :DKVLRNYMK 2mhr 48 :VKVTTNHFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25794 # 1hw1A.62.185 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 62 :DKVLRNYMK 1hw1A 186 :RSLALGFYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25795 # 1a6m.62.131 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 62 :DKVLRNYMK 1a6m 132 :NKALELFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25796 # 1po5A.62.123 read from T0287.t06.many.frag # found chain 1po5A in training set T0287 62 :DKVLRNYMK 1po5A 143 :EERIQEEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25797 # 1i60A.62.117 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 62 :DKVLRNYMK 1i60A 118 :KKSSVDVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25798 # 1ikpA.62.308 read from T0287.t06.many.frag # found chain 1ikpA in training set T0287 62 :DKVLRNYMK 1ikpA 309 :DQVIRNALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25799 # 1h7cA.62.67 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 62 :DKVLRNYMK 1h7cA 68 :QRRLEAAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25800 # 2bnlA.62.84 read from T0287.t06.many.frag # found chain 2bnlA in template set T0287 62 :DKVLRNYMK 2bnlA 85 :ATALAEFWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25801 # 1zc6A.63.229 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 63 :KVLRNYMKD 1zc6A 230 :ALLRQAGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=25802 # 1bgf.63.103 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 63 :KVLRNYMKD 1bgf 103 :VVISNCLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25803 # 2f5xA.63.290 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 63 :KVLRNYMKD 2f5xA 279 :AKVKQQVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25804 # 1txjA.63.88 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 63 :KVLRNYMKD 1txjA 89 :VYIKNYMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25805 # 1qoyA.63.223 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 63 :KVLRNYMKD 1qoyA 209 :PELKNKLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25806 # 1fjgT.63.78 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 63 :KVLRNYMKD 1fjgT 79 :RRKSRLMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25807 # 1mw9X.63.561 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 63 :KVLRNYMKD 1mw9X 562 :AVLDHFFSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25808 # 1wa5C.63.397 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 63 :KVLRNYMKD 1wa5C 398 :NIFLAHMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25809 # 1tu9A.63.24 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 63 :KVLRNYMKD 1tu9A 23 :DFYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25810 # 1hs6A.63.426 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 63 :KVLRNYMKD 1hs6A 426 :DFLYSYFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25811 # 1zk8A.63.113 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 63 :KVLRNYMKD 1zk8A 114 :KAGDGIVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25812 # 1y6xA.63.42 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 63 :KVLRNYMKD 1y6xA 43 :KKLLEEAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25813 # 1psrA.63.32 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 63 :KVLRNYMKD 1psrA 33 :TMMKENFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25814 # 1xp8A.63.183 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 63 :KVLRNYMKD 1xp8A 181 :RLMSQALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25815 # 1sz9A.63.68 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)M69 (1sz9A)G75 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 63 :KVLRNY 1sz9A 69 :SICKNV T0287 70 :K 1sz9A 76 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=25817 # 1j5wA.63.222 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 63 :KVLRNYMKD 1j5wA 211 :RHFDEYEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25818 # 1ytaA.63.112 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 63 :KVLRNYMKD 1ytaA 113 :RFLFKYMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25819 # 2au5A.63.86 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 63 :KVLRNYMKD 2au5A 84 :GELARLIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25820 # 1p4cA.63.323 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 63 :KVLRNYMKD 1p4cA 324 :EVLTLLKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25821 # 2mhr.63.48 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 63 :KVLRNYMKD 2mhr 49 :KVTTNHFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25822 # 1muwA.63.64 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 63 :KVLRNYMKD 1muwA 65 :TERESHIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25823 # 1eyqA.63.104 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 63 :KVLRNYMKD 1eyqA 105 :EYSRKVMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25824 # 1mxrA.63.123 read from T0287.t06.many.frag # found chain 1mxrA in training set T0287 63 :KVLRNYMKD 1mxrA 124 :HIIRNIVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=25825 # 1hw1A.63.186 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 63 :KVLRNYMKD 1hw1A 187 :SLALGFYHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25826 # 1tzvA.63.62 read from T0287.t06.many.frag # found chain 1tzvA in training set T0287 63 :KVLRNYMKD 1tzvA 63 :DLISRYLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25827 # 1a6m.63.132 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 63 :KVLRNYMKD 1a6m 133 :KALELFRKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25828 # 1i60A.63.118 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 63 :KVLRNYMKD 1i60A 119 :KSSVDVLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25829 # 1h7cA.63.68 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 63 :KVLRNYMKD 1h7cA 69 :RRLEAAYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25830 # 1yacA.63.184 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 63 :KVLRNYMKD 1yacA 185 :TLFSNHIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25831 # 1z8uA.63.38 read from T0287.t06.many.frag # found chain 1z8uA in template set T0287 63 :KVLRNYMKD 1z8uA 39 :TVVEDWMNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25832 # 1bgf.64.104 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 64 :VLRNYMKDY 1bgf 104 :VISNCLREE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25833 # 1wa5C.64.398 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 64 :VLRNYMKDY 1wa5C 399 :IFLAHMKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25834 # 1txjA.64.89 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 64 :VLRNYMKDY 1txjA 90 :YIKNYMQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25835 # 2f5xA.64.291 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 64 :VLRNYMKDY 2f5xA 280 :KVKQQVPQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25836 # 1zc6A.64.230 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 64 :VLRNYMKDY 1zc6A 231 :LLRQAGEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25837 # 1qoyA.64.224 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 64 :VLRNYMKDY 1qoyA 210 :ELKNKLKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25838 # 1fjgT.64.79 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 64 :VLRNYMKDY 1fjgT 80 :RKSRLMRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25839 # 1mw9X.64.562 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 64 :VLRNYMKDY 1mw9X 563 :VLDHFFSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25840 # 1hs6A.64.427 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 64 :VLRNYMKDY 1hs6A 427 :FLYSYFKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25841 # 1xp8A.64.184 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 64 :VLRNYMKDY 1xp8A 182 :LMSQALRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25842 # 1ytaA.64.113 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 64 :VLRNYMKDY 1ytaA 114 :FLFKYMPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25843 # 1psrA.64.33 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 64 :VLRNYMKDY 1psrA 34 :MMKENFPNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25844 # 1i60A.64.119 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 64 :VLRNYMKDY 1i60A 120 :SSVDVLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25845 # 1tu9A.64.25 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 64 :VLRNYMKDY 1tu9A 24 :FYRHFLASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25846 # 1muwA.64.65 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 64 :VLRNYMKDY 1muwA 66 :ERESHIKRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25847 # 1j5wA.64.223 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 64 :VLRNYMKDY 1j5wA 212 :HFDEYEKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25848 # 1y6xA.64.43 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 64 :VLRNYMKDY 1y6xA 44 :KLLEEAGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25849 # 1hw1A.64.187 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 64 :VLRNYMKDY 1hw1A 188 :LALGFYHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25850 # 2mhr.64.49 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 64 :VLRNYMKDY 2mhr 50 :VTTNHFTHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25851 # 1eyqA.64.105 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 64 :VLRNYMKDY 1eyqA 106 :YSRKVMENC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25852 # 1zk8A.64.114 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 64 :VLRNYMKDY 1zk8A 115 :AGDGIVKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25853 # 1mxrA.64.124 read from T0287.t06.many.frag # found chain 1mxrA in training set T0287 64 :VLRNYMKDY 1mxrA 125 :IIRNIVNDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25854 # 1h7cA.64.69 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 64 :VLRNYMKDY 1h7cA 70 :RLEAAYLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25855 # 2au5A.64.87 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 64 :VLRNYMKDY 2au5A 85 :ELARLIRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25856 # 1b5l.64.118 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 64 :VLRNYMKDY 1b5l 119 :TVKKYFQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25857 # 1yacA.64.185 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 64 :VLRNYMKDY 1yacA 186 :LFSNHIPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25858 # 1l9lA.64.43 read from T0287.t06.many.frag # found chain 1l9lA in training set Warning: unaligning (T0287)D71 because of BadResidue code BAD_PEPTIDE in next template residue (1l9lA)Y52 Warning: unaligning (T0287)Y72 because of BadResidue code BAD_PEPTIDE at template residue (1l9lA)Y52 T0287 64 :VLRNYMK 1l9lA 44 :VCRNFMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25859 # 1p4cA.64.324 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 64 :VLRNYMKDY 1p4cA 325 :VLTLLKADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25860 # 1z8uA.64.39 read from T0287.t06.many.frag # found chain 1z8uA in template set T0287 64 :VLRNYMKDY 1z8uA 40 :VVEDWMNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25861 # 1sz9A.64.69 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)D71 (1sz9A)P77 because C (cis) conformation "forbidden" or filtered. T0287 64 :VLRNYMK 1sz9A 70 :ICKNVGS T0287 72 :Y 1sz9A 78 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=25863 # 1wa5C.65.399 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 65 :LRNYMKDYR 1wa5C 400 :FLAHMKGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25864 # 1bgf.65.105 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 65 :LRNYMKDYR 1bgf 105 :ISNCLREER Number of specific fragments extracted= 1 number of extra gaps= 0 total=25865 # 1zc6A.65.231 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 65 :LRNYMKDYR 1zc6A 232 :LRQAGEDAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25866 # 2f5xA.65.292 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 65 :LRNYMKDYR 2f5xA 281 :VKQQVPQWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25867 # 1txjA.65.90 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 65 :LRNYMKDYR 1txjA 91 :IKNYMQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25868 # 1fjgT.65.80 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 65 :LRNYMKDYR 1fjgT 81 :KSRLMRKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25869 # 1xp8A.65.185 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 65 :LRNYMKDYR 1xp8A 183 :MSQALRKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25870 # 1muwA.65.66 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 65 :LRNYMKDYR 1muwA 67 :RESHIKRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25871 # 1mw9X.65.563 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 65 :LRNYMKDYR 1mw9X 564 :LDHFFSDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25872 # 1qoyA.65.225 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 65 :LRNYMKDYR 1qoyA 211 :LKNKLKSVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25873 # 1j5wA.65.224 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 65 :LRNYMKDYR 1j5wA 213 :FDEYEKEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25874 # 1hs6A.65.428 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 65 :LRNYMKDYR 1hs6A 428 :LYSYFKDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25875 # 1eyqA.65.106 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 65 :LRNYMKDYR 1eyqA 107 :SRKVMENCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25876 # 2mhr.65.50 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 65 :LRNYMKDYR 2mhr 51 :TTNHFTHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25877 # 1ytaA.65.114 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 65 :LRNYMKDYR 1ytaA 115 :LFKYMPELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25878 # 1psrA.65.34 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 65 :LRNYMKDYR 1psrA 35 :MKENFPNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25879 # 1p4cA.65.325 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 65 :LRNYMKDYR 1p4cA 326 :LTLLKADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25880 # 1zk8A.65.115 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 65 :LRNYMKDYR 1zk8A 116 :GDGIVKLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25881 # 1b5l.65.119 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 65 :LRNYMKDYR 1b5l 120 :VKKYFQGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25882 # 1tu9A.65.26 read from T0287.t06.many.frag # found chain 1tu9A in training set T0287 65 :LRNYMKDYR 1tu9A 25 :YRHFLASSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25883 # 1i60A.65.120 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 65 :LRNYMKDYR 1i60A 121 :SVDVLTELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25884 # 1h7cA.65.70 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 65 :LRNYMKDYR 1h7cA 71 :LEAAYLDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25885 # 1a6m.65.134 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 65 :LRNYMKDYR 1a6m 135 :LELFRKDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25886 # 1hw1A.65.188 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 65 :LRNYMKDYR 1hw1A 189 :ALGFYHKLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25887 # 1uw4B.65.78 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 65 :LRNYMKDYR 1uw4B 846 :VDGVLEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25888 # 1y6xA.65.44 read from T0287.t06.many.frag # found chain 1y6xA in training set T0287 65 :LRNYMKDYR 1y6xA 45 :LLEEAGEVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25889 # 1dlwA.65.77 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 65 :LRNYMKDYR 1dlwA 78 :FTTVIGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25890 # 1fjgI.65.84 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 65 :LRNYMKDYR 1fjgI 85 :LVQYNPDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25891 # 1ail.65.35 read from T0287.t06.many.frag # found chain 1ail in template set T0287 65 :LRNYMKDYR 1ail 36 :LRRDQKSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25892 # 2au5A.65.88 read from T0287.t06.many.frag # found chain 2au5A in template set T0287 65 :LRNYMKDYR 2au5A 86 :LARLIRLYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25893 # 1wa5C.66.400 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 66 :RNYMKDYRA 1wa5C 401 :LAHMKGFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25894 # 2f5xA.66.293 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 66 :RNYMKDYRA 2f5xA 282 :KQQVPQWAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25895 # 1bgf.66.106 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 66 :RNYMKDYRA 1bgf 106 :SNCLREERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25896 # 1qoyA.66.226 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 66 :RNYMKDYRA 1qoyA 212 :KNKLKSVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25897 # 1txjA.66.91 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 66 :RNYMKDYRA 1txjA 92 :KNYMQKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25898 # 1fjgT.66.81 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 66 :RNYMKDYRA 1fjgT 82 :SRLMRKVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25899 # 1muwA.66.67 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 66 :RNYMKDYRA 1muwA 68 :ESHIKRFRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25900 # 1zc6A.66.232 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 66 :RNYMKDYRA 1zc6A 233 :RQAGEDAWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25901 # 1xp8A.66.186 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 66 :RNYMKDYRA 1xp8A 184 :SQALRKLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25902 # 1psrA.66.35 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 66 :RNYMKDYRA 1psrA 36 :KENFPNFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25903 # 2mhr.66.51 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 66 :RNYMKDYRA 2mhr 52 :TNHFTHEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25904 # 1i60A.66.121 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 66 :RNYMKDYRA 1i60A 122 :VDVLTELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25905 # 1eyqA.66.107 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 66 :RNYMKDYRA 1eyqA 108 :RKVMENCVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25906 # 1hs6A.66.429 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 66 :RNYMKDYRA 1hs6A 429 :YSYFKDKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25907 # 1h7cA.66.71 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 66 :RNYMKDYRA 1h7cA 72 :EAAYLDLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25908 # 1a6m.66.135 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 66 :RNYMKDYRA 1a6m 136 :ELFRKDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25909 # 1mw9X.66.564 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 66 :RNYMKDYRA 1mw9X 565 :DHFFSDFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25910 # 1hw1A.66.189 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 66 :RNYMKDYRA 1hw1A 190 :LGFYHKLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25911 # 1b5l.66.120 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 66 :RNYMKDYRA 1b5l 121 :KKYFQGIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25912 # 1ytaA.66.115 read from T0287.t06.many.frag # found chain 1ytaA in template set T0287 66 :RNYMKDYRA 1ytaA 116 :FKYMPELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25913 # 1iuqA.66.37 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 66 :RNYMKDYRA 1iuqA 39 :EELYQNYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25914 # 1j5wA.66.225 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 66 :RNYMKDYRA 1j5wA 214 :DEYEKEFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25915 # 1fkmA.66.61 read from T0287.t06.many.frag # found chain 1fkmA in template set T0287 66 :RNYMKDYRA 1fkmA 309 :QRKRKEYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25916 # 1fjgI.66.85 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 66 :RNYMKDYRA 1fjgI 86 :VQYNPDYRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25917 # 1ail.66.36 read from T0287.t06.many.frag # found chain 1ail in template set T0287 66 :RNYMKDYRA 1ail 37 :RRDQKSLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25918 # 1dlwA.66.78 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 66 :RNYMKDYRA 1dlwA 79 :TTVIGHLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25919 # 1p4cA.66.326 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 66 :RNYMKDYRA 1p4cA 327 :TLLKADIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25920 # 1zk8A.66.116 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 66 :RNYMKDYRA 1zk8A 117 :DGIVKLCLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25921 # 1yacA.66.187 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 66 :RNYMKDYRA 1yacA 188 :SNHIPDYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25922 # 1yviA.66.75 read from T0287.t06.many.frag # found chain 1yviA in template set T0287 66 :RNYMKDYRA 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25923 # 2f5xA.67.294 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 67 :NYMKDYRAV 2f5xA 283 :QQVPQWAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25924 # 1wa5C.67.401 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 67 :NYMKDYRAV 1wa5C 402 :AHMKGFVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25925 # 1fjgT.67.82 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 67 :NYMKDYRAV 1fjgT 83 :RLMRKVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25926 # 1muwA.67.68 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 67 :NYMKDYRAV 1muwA 69 :SHIKRFRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25927 # 1bgf.67.107 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 67 :NYMKDYRAV 1bgf 107 :NCLREERRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25928 # 1xp8A.67.187 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 67 :NYMKDYRAV 1xp8A 185 :QALRKLTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25929 # 1fjgI.67.86 read from T0287.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 67 :NYMKDYRA 1fjgI 87 :QYNPDYRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25930 # 2mhr.67.52 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 67 :NYMKDYRAV 2mhr 53 :NHFTHEEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25931 # 1iuqA.67.38 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 67 :NYMKDYRAV 1iuqA 40 :ELYQNYRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25932 # 1zc6A.67.233 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 67 :NYMKDYRAV 1zc6A 234 :QAGEDAWAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25933 # 1eyqA.67.108 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 67 :NYMKDYRAV 1eyqA 109 :KVMENCVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25934 # 1qoyA.67.227 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 67 :NYMKDYRAV 1qoyA 213 :NKLKSVQNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25935 # 1txjA.67.92 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 67 :NYMKDYRAV 1txjA 93 :NYMQKILKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25936 # 1hw1A.67.190 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 67 :NYMKDYRAV 1hw1A 191 :GFYHKLSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25937 # 1dlwA.67.79 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 67 :NYMKDYRAV 1dlwA 80 :TVIGHLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25938 # 1psrA.67.36 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 67 :NYMKDYRAV 1psrA 37 :ENFPNFLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25939 # 1a6m.67.136 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 67 :NYMKDYRAV 1a6m 137 :LFRKDIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25940 # 1h7cA.67.72 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 67 :NYMKDYRAV 1h7cA 73 :AAYLDLQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25941 # 1hs6A.67.430 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 67 :NYMKDYRAV 1hs6A 430 :SYFKDKVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25942 # 1i60A.67.122 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 67 :NYMKDYRAV 1i60A 123 :DVLTELSDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25943 # 1zk8A.67.117 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 67 :NYMKDYRAV 1zk8A 118 :GIVKLCLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25944 # 1b5l.67.121 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 67 :NYMKDYRAV 1b5l 122 :KYFQGIYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25945 # 1p4cA.67.327 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 67 :NYMKDYRAV 1p4cA 328 :LLKADIDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25946 # 1fkmA.67.62 read from T0287.t06.many.frag # found chain 1fkmA in template set T0287 67 :NYMKDYRAV 1fkmA 310 :RKRKEYRDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25947 # 1mw9X.67.565 read from T0287.t06.many.frag # found chain 1mw9X in training set T0287 67 :NYMKDYRAV 1mw9X 566 :HFFSDFTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25948 # 1j5wA.67.226 read from T0287.t06.many.frag # found chain 1j5wA in template set T0287 67 :NYMKDYRAV 1j5wA 215 :EYEKEFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25949 # 1uw4B.67.80 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 67 :NYMKDYRAV 1uw4B 848 :GVLEDIRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25950 # 1m48A.67.60 read from T0287.t06.many.frag # found chain 1m48A in template set T0287 67 :NYMKDYRAV 1m48A 61 :EELKPLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25951 # 1ail.67.37 read from T0287.t06.many.frag # found chain 1ail in template set T0287 67 :NYMKDYRAV 1ail 38 :RDQKSLRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25952 # 1yacA.67.188 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 67 :NYMKDYRAV 1yacA 189 :NHIPDYRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25953 # 2f5xA.68.295 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 68 :YMKDYRAVI 2f5xA 284 :QVPQWAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25954 # 1fjgI.68.87 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 68 :YMKDYRAVI 1fjgI 88 :YNPDYRAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25955 # 1wa5C.68.402 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 68 :YMKDYRAVI 1wa5C 403 :HMKGFVDQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25956 # 1fjgT.68.83 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 68 :YMKDYRAVI 1fjgT 84 :LMRKVRQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25957 # 1muwA.68.69 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 68 :YMKDYRAVI 1muwA 70 :HIKRFRQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25958 # 1bgf.68.108 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 68 :YMKDYRAVI 1bgf 108 :CLREERRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25959 # 1psrA.68.37 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 68 :YMKDYRAVI 1psrA 38 :NFPNFLSAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25960 # 2mhr.68.53 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 68 :YMKDYRAVI 2mhr 54 :HFTHEEAMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25961 # 1dlwA.68.80 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 68 :YMKDYRAVI 1dlwA 81 :VIGHLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25962 # 1iuqA.68.39 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 68 :YMKDYRAVI 1iuqA 41 :LYQNYRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25963 # 1xp8A.68.188 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 68 :YMKDYRAVI 1xp8A 186 :ALRKLTAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25964 # 1eyqA.68.109 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 68 :YMKDYRAVI 1eyqA 110 :VMENCVAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25965 # 1hw1A.68.191 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 68 :YMKDYRAVI 1hw1A 192 :FYHKLSALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25966 # 1zc6A.68.234 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 68 :YMKDYRAVI 1zc6A 235 :AGEDAWAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25967 # 1txjA.68.93 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 68 :YMKDYRAVI 1txjA 94 :YMQKILKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25968 # 1yacA.68.189 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 68 :YMKDYRAVI 1yacA 190 :HIPDYRNLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25969 # 1hs6A.68.431 read from T0287.t06.many.frag # found chain 1hs6A in template set T0287 68 :YMKDYRAVI 1hs6A 431 :YFKDKVDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25970 # 1h7cA.68.73 read from T0287.t06.many.frag # found chain 1h7cA in training set T0287 68 :YMKDYRAVI 1h7cA 74 :AYLDLQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25971 # 1qoyA.68.228 read from T0287.t06.many.frag # found chain 1qoyA in template set T0287 68 :YMKDYRAVI 1qoyA 214 :KLKSVQNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25972 # 1yqyA.68.53 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 68 :YMKDYRAVI 1yqyA 311 :LSQEEKELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25973 # 1a6m.68.137 read from T0287.t06.many.frag # found chain 1a6m in training set T0287 68 :YMKDYRAVI 1a6m 138 :FRKDIAAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25974 # 1ail.68.38 read from T0287.t06.many.frag # found chain 1ail in template set T0287 68 :YMKDYRAVI 1ail 39 :DQKSLRGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25975 # 1i60A.68.123 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 68 :YMKDYRAVI 1i60A 124 :VLTELSDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25976 # 1p4cA.68.328 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 68 :YMKDYRAVI 1p4cA 329 :LKADIDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25977 # 1a8o.68.43 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 68 :YMKDYRAVI 1a8o 194 :ANPDCKTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25978 # 1zk8A.68.118 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 68 :YMKDYRAVI 1zk8A 119 :IVKLCLQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25979 # 1b5l.68.122 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 68 :YMKDYRAVI 1b5l 123 :YFQGIYDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25980 # 1cxqA.68.115 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 68 :YMKDYRAVI 1cxqA 163 :LKDKIRVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25981 # 2f6hX.68.76 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 68 :YMKDYRAVI 2f6hX 98 :VLTTIQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25982 # 1uw4B.68.81 read from T0287.t06.many.frag # found chain 1uw4B in template set T0287 68 :YMKDYRAVI 1uw4B 849 :VLEDIRLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25983 # 2f5xA.69.296 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 69 :MKDYRAVIK 2f5xA 285 :VPQWAELFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25984 # 1fjgI.69.88 read from T0287.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 69 :MKDYRA 1fjgI 89 :NPDYRA T0287 76 :IK 1fjgI 96 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25986 # 2mhr.69.54 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 69 :MKDYRAVIK 2mhr 55 :FTHEEAMMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25987 # 1fjgT.69.84 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 69 :MKDYRAVIK 1fjgT 85 :MRKVRQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25988 # 1iuqA.69.40 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 69 :MKDYRAVIK 1iuqA 42 :YQNYRNAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25989 # 1hw1A.69.192 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 69 :MKDYRAVIK 1hw1A 193 :YHKLSALCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25990 # 1dlwA.69.81 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 69 :MKDYRAVIK 1dlwA 82 :IGHLRSALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25991 # 1xp8A.69.189 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 69 :MKDYRAVIK 1xp8A 187 :LRKLTAILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25992 # 1muwA.69.70 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 69 :MKDYRAVIK 1muwA 71 :IKRFRQALD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25993 # 1eyqA.69.110 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 69 :MKDYRAVIK 1eyqA 111 :MENCVAHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25994 # 1psrA.69.38 read from T0287.t06.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)M69 (1psrA)F39 because G (3-10) conformation "forbidden" or filtered. T0287 70 :KDYRAVIK 1psrA 40 :PNFLSACD Number of specific fragments extracted= 1 number of extra gaps= 1 total=25995 # 1bgf.69.109 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 69 :MKDYRAVIK 1bgf 109 :LREERRILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25996 # 1yqyA.69.54 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 69 :MKDYRAVIK 1yqyA 312 :SQEEKELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25997 # 1wa5C.69.403 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 69 :MKDYRAVIK 1wa5C 404 :MKGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25998 # 1bxyA.69.15 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 69 :MKDYRAVIK 1bxyA 16 :PKDQKAALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25999 # 1eexA.69.415 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 69 :MKDYRAVIK 1eexA 416 :ARALQAVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26000 # 1i60A.69.124 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 69 :MKDYRAVIK 1i60A 125 :LTELSDIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26001 # 2f6hX.69.77 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 69 :MKDYRAVIK 2f6hX 99 :LTTIQKVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26002 # 1cxqA.69.116 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 69 :MKDYRAVIK 1cxqA 164 :KDKIRVLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26003 # 1zk8A.69.119 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 69 :MKDYRAVIK 1zk8A 120 :VKLCLQVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26004 # 1ajsA.69.333 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 69 :MKDYRAVIK 1ajsA 334 :RSELRARLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26005 # 1t0fA.69.197 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 69 :MKDYRAVIK 1t0fA 195 :LSPLAHILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26006 # 1a8o.69.44 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 69 :MKDYRAVIK 1a8o 195 :NPDCKTILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26007 # 1zc6A.69.235 read from T0287.t06.many.frag # found chain 1zc6A in template set T0287 69 :MKDYRAVIK 1zc6A 236 :GEDAWAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26008 # 1yacA.69.190 read from T0287.t06.many.frag # found chain 1yacA in training set T0287 69 :MKDYRAVIK 1yacA 191 :IPDYRNLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26009 # 1txjA.69.94 read from T0287.t06.many.frag # found chain 1txjA in template set T0287 69 :MKDYRAVIK 1txjA 95 :MQKILKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26010 # 1b5l.69.123 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 69 :MKDYRAVIK 1b5l 124 :FQGIYDYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26011 # 1p4cA.69.329 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 69 :MKDYRAVIK 1p4cA 330 :KADIDRTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26012 # 8abp.69.117 read from T0287.t06.many.frag # found chain 8abp in training set T0287 69 :MKDYRAVIK 8abp 118 :GQELYKEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26013 # 2f22A.69.119 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 69 :MKDYRAVIK 2f22A 119 :QGQYYVALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26014 # 2f5xA.70.297 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 70 :KDYRAVIKS 2f5xA 286 :PQWAELFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26015 # 2mhr.70.55 read from T0287.t06.many.frag # found chain 2mhr in training set T0287 70 :KDYRAVIKS 2mhr 56 :THEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26016 # 1fjgT.70.85 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 70 :KDYRAVIKS 1fjgT 86 :RKVRQLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26017 # 1dlwA.70.82 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 70 :KDYRAVIKS 1dlwA 83 :GHLRSALTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26018 # 1eyqA.70.111 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 70 :KDYRAVIKS 1eyqA 112 :ENCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26019 # 1hw1A.70.193 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 70 :KDYRAVIKS 1hw1A 194 :HKLSALCSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26020 # 1eexA.70.416 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 70 :KDYRAVIKS 1eexA 417 :RALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26021 # 1iuqA.70.41 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 70 :KDYRAVIKS 1iuqA 43 :QNYRNAVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26022 # 1xp8A.70.190 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 70 :KDYRAVIKS 1xp8A 188 :RKLTAILSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26023 # 1yqyA.70.55 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 70 :KDYRAVIKS 1yqyA 313 :QEEKELLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26024 # 1fjgI.70.89 read from T0287.t06.many.frag # found chain 1fjgI in template set T0287 70 :KDYRAVIKS 1fjgI 90 :PDYRAKLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26025 # 2f6hX.70.78 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 70 :KDYRAVIKS 2f6hX 100 :TTIQKVVTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26026 # 1bgf.70.110 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 70 :KDYRAVIKS 1bgf 110 :REERRILAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26027 # 1psrA.70.39 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 70 :KDYRAVIKS 1psrA 40 :PNFLSACDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26028 # 1bxyA.70.16 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 70 :KDYRAVIKS 1bxyA 17 :KDQKAALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26029 # 1muwA.70.71 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 70 :KDYRAVIKS 1muwA 72 :KRFRQALDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26030 # 1cxqA.70.117 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 70 :KDYRAVIKS 1cxqA 165 :DKIRVLAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26031 # 1a8o.70.45 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 70 :KDYRAVIKS 1a8o 196 :PDCKTILKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26032 # 1y0zA.70.74 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 70 :KDYRAVIKS 1y0zA 75 :DDFNDVVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26033 # 1t0fA.70.198 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 70 :KDYRAVIKS 1t0fA 196 :SPLAHILQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26034 # 1p4cA.70.330 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 70 :KDYRAVIKS 1p4cA 331 :ADIDRTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26035 # 2f22A.70.120 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 70 :KDYRAVIKS 2f22A 120 :GQYYVALKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26036 # 1zk8A.70.120 read from T0287.t06.many.frag # found chain 1zk8A in template set T0287 70 :KDYRAVIKS 1zk8A 121 :KLCLQVLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26037 # 1i60A.70.125 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 70 :KDYRAVIKS 1i60A 126 :TELSDIAEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26038 # 1wa5C.70.404 read from T0287.t06.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wa5C)N418 T0287 70 :KDYRAVIK 1wa5C 405 :KGFVDQYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26039 # 1b5l.70.124 read from T0287.t06.many.frag # found chain 1b5l in template set T0287 70 :KDYRAVIKS 1b5l 125 :QGIYDYLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26040 # 1pa7A.70.75 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 70 :KDYRAVIKS 1pa7A 76 :KILQAGFKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26041 # 1mn8A.70.17 read from T0287.t06.many.frag # found chain 1mn8A in training set T0287 70 :KDYRAVIKS 1mn8A 17 :KDVERIAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26042 # 8abp.70.118 read from T0287.t06.many.frag # found chain 8abp in training set T0287 70 :KDYRAVIKS 8abp 119 :QELYKEMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26043 # 1y2qA.70.61 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 70 :KDYRAVIKS 1y2qA 62 :EEISKVAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26044 # 2f5xA.71.298 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 71 :DYRAVIKSI 2f5xA 287 :QWAELFKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26045 # 1fjgT.71.86 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 71 :DYRAVIKSI 1fjgT 87 :KVRQLLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26046 # 2mhr.71.56 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 T0287 71 :DYRAVIKS 2mhr 57 :HEEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26047 # 1yqyA.71.56 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 71 :DYRAVIKSI 1yqyA 314 :EEKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26048 # 1eyqA.71.112 read from T0287.t06.many.frag # found chain 1eyqA in template set Warning: unaligning (T0287)I79 (1eyqA)V121 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1eyqA 113 :NCVAHLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26049 # 1hw1A.71.194 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 71 :DYRAVIKSI 1hw1A 195 :KLSALCSEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26050 # 1iuqA.71.42 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 71 :DYRAVIKSI 1iuqA 44 :NYRNAVIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26051 # 1xp8A.71.191 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 71 :DYRAVIKSI 1xp8A 189 :KLTAILSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26052 # 1dlwA.71.83 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 71 :DYRAVIKSI 1dlwA 84 :HLRSALTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26053 # 1bxyA.71.17 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 71 :DYRAVIKSI 1bxyA 18 :DQKAALKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26054 # 2f6hX.71.79 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 71 :DYRAVIKSI 2f6hX 101 :TIQKVVTQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26055 # 1eexA.71.417 read from T0287.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)I79 (1eexA)M426 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1eexA 418 :ALQAVFAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26056 # 1a8o.71.46 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 71 :DYRAVIKSI 1a8o 197 :DCKTILKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26057 # 1psrA.71.40 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 71 :DYRAVIKSI 1psrA 41 :NFLSACDKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26058 # 1t0fA.71.199 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 71 :DYRAVIKSI 1t0fA 197 :PLAHILQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26059 # 1y0zA.71.75 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 71 :DYRAVIKSI 1y0zA 76 :DFNDVVEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26060 # 2f22A.71.121 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 71 :DYRAVIKSI 2f22A 121 :QYYVALKQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26061 # 1y2qA.71.62 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 71 :DYRAVIKSI 1y2qA 63 :EISKVAEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26062 # 1p4cA.71.331 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 71 :DYRAVIKSI 1p4cA 332 :DIDRTLAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26063 # 1i60A.71.126 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 71 :DYRAVIKSI 1i60A 127 :ELSDIAEPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26064 # 1fjgI.71.90 read from T0287.t06.many.frag # found chain 1fjgI in template set Warning: unaligning (T0287)V75 (1fjgI)K95 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRA 1fjgI 91 :DYRA T0287 76 :IKSI 1fjgI 96 :LKPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26066 # 1ajsA.71.335 read from T0287.t06.many.frag # found chain 1ajsA in training set Warning: unaligning (T0287)I79 (1ajsA)L344 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1ajsA 336 :ELRARLEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26067 # 1bgf.71.111 read from T0287.t06.many.frag # found chain 1bgf in training set T0287 71 :DYRAVIKSI 1bgf 111 :EERRILAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26068 # 1pa7A.71.76 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 71 :DYRAVIKSI 1pa7A 77 :ILQAGFKRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26069 # 1muwA.71.72 read from T0287.t06.many.frag # found chain 1muwA in training set T0287 71 :DYRAVIKSI 1muwA 73 :RFRQALDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26070 # 1cxqA.71.118 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 71 :DYRAVIKSI 1cxqA 166 :KIRVLAEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26071 # 1rcwA.71.183 read from T0287.t06.many.frag # found chain 1rcwA in template set Warning: unaligning (T0287)I79 (1rcwA)L192 because G (3-10) conformation "forbidden" or filtered. T0287 71 :DYRAVIKS 1rcwA 184 :EEKALIEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=26072 # 1mn8A.71.18 read from T0287.t06.many.frag # found chain 1mn8A in training set T0287 71 :DYRAVIKSI 1mn8A 18 :DVERIAHNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26073 # 8abp.71.119 read from T0287.t06.many.frag # found chain 8abp in training set T0287 71 :DYRAVIKSI 8abp 120 :ELYKEMQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26074 # 2ajtA.71.212 read from T0287.t06.many.frag # found chain 2ajtA in template set T0287 71 :DYRAVIKSI 2ajtA 213 :DLVQVVNSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26075 # 2f5xA.72.299 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 72 :YRAVIKSIG 2f5xA 288 :WAELFKKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26076 # 1fjgT.72.87 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 72 :YRAVIKSIG 1fjgT 88 :VRQLLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26077 # 1yqyA.72.57 read from T0287.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1yqyA 315 :EKELLKRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26078 # 2mhr.72.57 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 72 :YRAVIKS 2mhr 58 :EEAMMDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26079 # 1eyqA.72.113 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 72 :YRAVIKSIG 1eyqA 114 :CVAHLKSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26080 # 1bxyA.72.18 read from T0287.t06.many.frag # found chain 1bxyA in template set Warning: unaligning (T0287)I79 (1bxyA)L26 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1bxyA 19 :QKAALKA T0287 80 :G 1bxyA 27 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26082 # 1eexA.72.418 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 72 :YRAVIKSIG 1eexA 419 :LQAVFAGMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26083 # 1y0zA.72.76 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 72 :YRAVIKSIG 1y0zA 77 :FNDVVEAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26084 # 1y2qA.72.63 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 72 :YRAVIKSIG 1y2qA 64 :ISKVAEQVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26085 # 1xp8A.72.192 read from T0287.t06.many.frag # found chain 1xp8A in template set T0287 72 :YRAVIKSIG 1xp8A 190 :LTAILSKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26086 # 1hw1A.72.195 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1hw1A 196 :LSALCSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26087 # 1iuqA.72.43 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 72 :YRAVIKSIG 1iuqA 45 :YRNAVIESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26088 # 1dlwA.72.84 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 72 :YRAVIKSIG 1dlwA 85 :LRSALTGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26089 # 1t0fA.72.200 read from T0287.t06.many.frag # found chain 1t0fA in template set Warning: unaligning (T0287)G80 (1t0fA)G206 because H (helix) conformation "forbidden" or filtered. T0287 72 :YRAVIKSI 1t0fA 198 :LAHILQEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26090 # 2f22A.72.122 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 72 :YRAVIKSIG 2f22A 122 :YYVALKQSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26091 # 2f6hX.72.80 read from T0287.t06.many.frag # found chain 2f6hX in template set T0287 72 :YRAVIKSIG 2f6hX 102 :IQKVVTQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26092 # 1a8o.72.47 read from T0287.t06.many.frag # found chain 1a8o in training set T0287 72 :YRAVIKSIG 1a8o 198 :CKTILKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26093 # 1psrA.72.41 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 72 :YRAVIKSIG 1psrA 42 :FLSACDKKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26094 # 1cxqA.72.119 read from T0287.t06.many.frag # found chain 1cxqA in training set Warning: unaligning (T0287)I79 (1cxqA)D174 because G (3-10) conformation "forbidden" or filtered. T0287 72 :YRAVIKS 1cxqA 167 :IRVLAEG T0287 80 :G 1cxqA 175 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26096 # 1pa7A.72.77 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 72 :YRAVIKSIG 1pa7A 78 :LQAGFKRMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26097 # 1k3yA.72.134 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)I79 (1k3yA)H143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 T0287 72 :YRAVIKS 1k3yA 136 :FEKVLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26098 # 1p4cA.72.332 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 72 :YRAVIKSIG 1p4cA 333 :IDRTLAQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26099 # 1ve4A.72.18 read from T0287.t06.many.frag # found chain 1ve4A in template set T0287 72 :YRAVIKSIG 1ve4A 19 :AYEVLKRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26100 # 2bu3A.72.138 read from T0287.t06.many.frag # found chain 2bu3A in template set T0287 72 :YRAVIKSIG 2bu3A 128 :LGRLIASYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26101 # 1rcwA.72.184 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 72 :YRAVIKSIG 1rcwA 185 :EKALIEMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26102 # 1s1dA.72.195 read from T0287.t06.many.frag # found chain 1s1dA in training set T0287 72 :YRAVIKSIG 1s1dA 196 :YNALRAAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26103 # 2ajtA.72.213 read from T0287.t06.many.frag # found chain 2ajtA in template set T0287 72 :YRAVIKSIG 2ajtA 214 :LVQVVNSIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26104 # 1ajsA.72.336 read from T0287.t06.many.frag # found chain 1ajsA in training set T0287 72 :YRAVIKSIG 1ajsA 337 :LRARLEALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26105 # 1i60A.72.127 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 72 :YRAVIKSIG 1i60A 128 :LSDIAEPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26106 # 1f5mA.72.52 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 72 :YRAVIKSIG 1f5mA 53 :IWHAYKSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26107 # 2f5xA.73.300 read from T0287.t06.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)I79 (2f5xA)A295 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 2f5xA 289 :AELFKK T0287 80 :GV 2f5xA 296 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26109 # 1yqyA.73.58 read from T0287.t06.many.frag # found chain 1yqyA in template set Warning: unaligning (T0287)G80 (1yqyA)Q323 because N (gamma') conformation "forbidden" or filtered. T0287 73 :RAVIKSI 1yqyA 316 :KELLKRI T0287 81 :V 1yqyA 324 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=26111 # 2mhr.73.58 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 73 :RAVIKS 2mhr 59 :EAMMDA T0287 81 :V 2mhr 67 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=26113 # 1fjgT.73.88 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 73 :RAVIKSIGV 1fjgT 89 :RQLLEAAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26114 # 1bxyA.73.19 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 73 :RAVIKSIGV 1bxyA 20 :KAALKALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26115 # 1iuqA.73.44 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 73 :RAVIKSIGV 1iuqA 46 :RNAVIESGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26116 # 1hw1A.73.196 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1hw1A 197 :SALCSE T0287 80 :GV 1hw1A 204 :AH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26118 # 1eexA.73.419 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 73 :RAVIKSIGV 1eexA 420 :QAVFAGMGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26119 # 1psrA.73.42 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 73 :RAVIKSIGV 1psrA 43 :LSACDKKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26120 # 1t0fA.73.201 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 73 :RAVIKSIGV 1t0fA 199 :AHILQEKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26121 # 1y0zA.73.77 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 73 :RAVIKSIGV 1y0zA 78 :NDVVEAFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26122 # 1eyqA.73.114 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 73 :RAVIKSIGV 1eyqA 115 :VAHLKSVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26123 # 2f6hX.73.81 read from T0287.t06.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)S78 (2f6hX)Q108 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIK 2f6hX 103 :QKVVT T0287 79 :IGV 2f6hX 109 :LKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26125 # 1y2qA.73.64 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 73 :RAVIKSIGV 1y2qA 65 :SKVAEQVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26126 # 1dlwA.73.85 read from T0287.t06.many.frag # found chain 1dlwA in training set T0287 73 :RAVIKSIGV 1dlwA 86 :RSALTGAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26127 # 1xp8A.73.193 read from T0287.t06.many.frag # found chain 1xp8A in template set Warning: unaligning (T0287)I79 (1xp8A)T197 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1xp8A 191 :TAILSK T0287 80 :GV 1xp8A 198 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26129 # 2f22A.73.123 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 73 :RAVIKSIGV 2f22A 123 :YVALKQSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26130 # 1pa7A.73.78 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 73 :RAVIKSIGV 1pa7A 79 :QAGFKRMGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26131 # 1ve4A.73.19 read from T0287.t06.many.frag # found chain 1ve4A in template set T0287 73 :RAVIKSIGV 1ve4A 20 :YEVLKRAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26132 # 1f5mA.73.53 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 73 :RAVIKSIGV 1f5mA 54 :WHAYKSLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26133 # 1a8o.73.48 read from T0287.t06.many.frag # found chain 1a8o in training set Warning: unaligning (T0287)S78 (1a8o)A204 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1a8o)G206 because S (epsilon) conformation "forbidden" or filtered. T0287 73 :RAVIK 1a8o 199 :KTILK T0287 79 :I 1a8o 205 :L T0287 81 :V 1a8o 207 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=26136 # 1cxqA.73.120 read from T0287.t06.many.frag # found chain 1cxqA in training set T0287 73 :RAVIKSIGV 1cxqA 168 :RVLAEGDGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26137 # 1k3yA.73.135 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 73 :RAVIKSI 1k3yA 137 :EKVLKSH Number of specific fragments extracted= 1 number of extra gaps= 1 total=26138 # 1v4vA.73.83 read from T0287.t06.many.frag # found chain 1v4vA in training set T0287 73 :RAVIKSIGV 1v4vA 84 :ARALKEMGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26139 # 2bu3A.73.139 read from T0287.t06.many.frag # found chain 2bu3A in template set Warning: unaligning (T0287)I79 (2bu3A)Y135 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 2bu3A 129 :GRLIAS T0287 80 :GV 2bu3A 136 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26141 # 1p4cA.73.333 read from T0287.t06.many.frag # found chain 1p4cA in training set Warning: unaligning (T0287)I79 (1p4cA)I340 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1p4cA 334 :DRTLAQ T0287 80 :GV 1p4cA 341 :GC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26143 # 1smbA.73.17 read from T0287.t06.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)I79 (1smbA)H24 because G (3-10) conformation "forbidden" or filtered. T0287 73 :RAVIKS 1smbA 18 :NEYRQK T0287 80 :GV 1smbA 25 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26145 # 1s1dA.73.196 read from T0287.t06.many.frag # found chain 1s1dA in training set T0287 73 :RAVIKSIGV 1s1dA 197 :NALRAAAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26146 # 2f8lA.73.70 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 73 :RAVIKSIGV 2f8lA 59 :QASYESIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26147 # 1yviA.73.82 read from T0287.t06.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)I79 (1yviA)V89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 T0287 73 :RAVIKS 1yviA 83 :KGSSAS T0287 80 :G 1yviA 90 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=26149 # 1pa7A.74.79 read from T0287.t06.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)I79 (1pa7A)M85 because G (3-10) conformation "forbidden" or filtered. T0287 74 :AVIKS 1pa7A 80 :AGFKR T0287 80 :GVD 1pa7A 86 :GVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26151 # 2f5xA.74.301 read from T0287.t06.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)I79 (2f5xA)A295 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (2f5xA)E298 because E (beta_S) conformation "forbidden" or filtered. T0287 74 :AVIKS 2f5xA 290 :ELFKK T0287 80 :GV 2f5xA 296 :GV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26153 # 1iuqA.74.45 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 74 :AVIKSIGVD 1iuqA 47 :NAVIESGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26154 # 2mhr.74.59 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 74 :AVIKS 2mhr 60 :AMMDA T0287 81 :VD 2mhr 67 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26156 # 1smbA.74.18 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 74 :AVIKSIGVD 1smbA 19 :EYRQKHGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26157 # 1bxyA.74.20 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 74 :AVIKSIGVD 1bxyA 21 :AALKALGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26158 # 1y0zA.74.78 read from T0287.t06.many.frag # found chain 1y0zA in template set T0287 74 :AVIKSIGVD 1y0zA 79 :DVVEAFGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26159 # 1eexA.74.420 read from T0287.t06.many.frag # found chain 1eexA in training set T0287 74 :AVIKSIGVD 1eexA 421 :AVFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26160 # 1psrA.74.43 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 74 :AVIKSIGVD 1psrA 44 :SACDKKGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26161 # 1f5mA.74.54 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 74 :AVIKSIGVD 1f5mA 55 :HAYKSLAVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26162 # 1yqyA.74.59 read from T0287.t06.many.frag # found chain 1yqyA in template set T0287 74 :AVIKSIGVD 1yqyA 317 :ELLKRIQID Number of specific fragments extracted= 1 number of extra gaps= 0 total=26163 # 1fjgT.74.89 read from T0287.t06.many.frag # found chain 1fjgT in template set T0287 74 :AVIKSIGVD 1fjgT 90 :QLLEAAGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26164 # 2f22A.74.124 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 74 :AVIKSIGVD 2f22A 124 :VALKQSGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26165 # 1t0fA.74.202 read from T0287.t06.many.frag # found chain 1t0fA in template set T0287 74 :AVIKSIGVD 1t0fA 200 :HILQEKGDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26166 # 1z3eB.74.21 read from T0287.t06.many.frag # found chain 1z3eB in template set T0287 74 :AVIKSIGVD 1z3eB 264 :NCLKRAGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26167 # 1w0hA.74.160 read from T0287.t06.many.frag # found chain 1w0hA in training set T0287 74 :AVIKSIGVD 1w0hA 279 :IMLEKLGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26168 # 1q0uA.74.16 read from T0287.t06.many.frag # found chain 1q0uA in template set T0287 74 :AVIKSIGVD 1q0uA 17 :EAIKTLRFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26169 # 1eyqA.74.115 read from T0287.t06.many.frag # found chain 1eyqA in template set T0287 74 :AVIKSIGVD 1eyqA 116 :AHLKSVGTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26170 # 1ve4A.74.20 read from T0287.t06.many.frag # found chain 1ve4A in template set T0287 74 :AVIKSIGVD 1ve4A 21 :EVLKRAGLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26171 # 1s1dA.74.197 read from T0287.t06.many.frag # found chain 1s1dA in training set T0287 74 :AVIKSIGVD 1s1dA 198 :ALRAAAGIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26172 # 1k3yA.74.136 read from T0287.t06.many.frag # found chain 1k3yA in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1k3yA)Q145 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1k3yA)Q145 T0287 74 :AVIKSI 1k3yA 138 :KVLKSH T0287 82 :D 1k3yA 146 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26174 # 1y2qA.74.65 read from T0287.t06.many.frag # found chain 1y2qA in template set T0287 74 :AVIKSIGVD 1y2qA 66 :KVAEQVKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26175 # 1hw1A.74.197 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 74 :AVIKS 1hw1A 198 :ALCSE T0287 80 :GVD 1hw1A 204 :AHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26177 # 1tqgA.74.49 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 74 :AVIKSIGVD 1tqgA 49 :GMAGTMGFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26178 # 2f8lA.74.71 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 74 :AVIKSIGVD 2f8lA 60 :ASYESIELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26179 # 2fokA.74.329 read from T0287.t06.many.frag # found chain 2fokA in template set T0287 74 :AVIKSIGVD 2fokA 330 :DNLKKLGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26180 # 1p4cA.74.334 read from T0287.t06.many.frag # found chain 1p4cA in training set T0287 74 :AVIKSIGVD 1p4cA 335 :RTLAQIGCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26181 # 8abp.74.122 read from T0287.t06.many.frag # found chain 8abp in training set T0287 74 :AVIKSIGVD 8abp 123 :KEMQKRGWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26182 # 2f6hX.74.82 read from T0287.t06.many.frag # found chain 2f6hX in template set Warning: unaligning (T0287)V81 (2f6hX)G111 because S (epsilon) conformation "forbidden" or filtered. T0287 74 :AVIKSIG 2f6hX 104 :KVVTQLK T0287 82 :D 2f6hX 112 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=26184 # 1a62.74.15 read from T0287.t06.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 74 :AVIKSIGV 1a62 16 :TLGENMGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26185 # 1pa7A.75.80 read from T0287.t06.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)K83 (1pa7A)K89 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1pa7A 81 :GFKRMGVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26186 # 1smbA.75.19 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 75 :VIKSIGVDK 1smbA 20 :YRQKHGVPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26187 # 1iuqA.75.46 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 75 :VIKSIGVDK 1iuqA 48 :AVIESGNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26188 # 1psrA.75.44 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 75 :VIKSIGVDK 1psrA 45 :ACDKKGTNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26189 # 1y0zA.75.79 read from T0287.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0287)K83 (1y0zA)E88 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGVD 1y0zA 80 :VVEAFGFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26190 # 1iirA.75.172 read from T0287.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)I79 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1iirA 173 :HRDA T0287 80 :GVDK 1iirA 178 :GLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26192 # 2f5xA.75.302 read from T0287.t06.many.frag # found chain 2f5xA in template set T0287 75 :VIKSIGVDK 2f5xA 291 :LFKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26193 # 1z3eB.75.22 read from T0287.t06.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1z3eB)T273 because E (beta_S) conformation "forbidden" or filtered. T0287 75 :VIKS 1z3eB 265 :CLKR T0287 80 :GVD 1z3eB 270 :GIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26195 # 2f22A.75.125 read from T0287.t06.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 2f22A 125 :ALKQ T0287 80 :GVDK 2f22A 130 :GINL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26197 # 2fokA.75.330 read from T0287.t06.many.frag # found chain 2fokA in template set T0287 75 :VIKSIGVDK 2fokA 331 :NLKKLGFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26198 # 1tqgA.75.50 read from T0287.t06.many.frag # found chain 1tqgA in training set Warning: unaligning (T0287)I79 (1tqgA)M54 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1tqgA 50 :MAGT T0287 80 :GVDK 1tqgA 55 :GFSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26200 # 1uocA.75.231 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 75 :VIKSIGVDK 1uocA 232 :LADELGLPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26201 # 2mhr.75.60 read from T0287.t06.many.frag # found chain 2mhr in training set Warning: unaligning (T0287)I79 because of BadResidue code BAD_PEPTIDE in next template residue (2mhr)K66 Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE at template residue (2mhr)K66 T0287 75 :VIKS 2mhr 61 :MMDA T0287 81 :VDK 2mhr 67 :YSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26203 # 1c1kA.75.122 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 75 :VIKSIGVDK 1c1kA 123 :FSKKVEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26204 # 1kr7A.75.89 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKSIGV 1kr7A 89 :ACSAHGA T0287 83 :K 1kr7A 97 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26206 # 1eexA.75.421 read from T0287.t06.many.frag # found chain 1eexA in training set Warning: unaligning (T0287)K83 because of BadResidue code BAD_PEPTIDE in next template residue (1eexA)I431 T0287 75 :VIKSIGVD 1eexA 422 :VFAGMGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26207 # 1bxyA.75.21 read from T0287.t06.many.frag # found chain 1bxyA in template set T0287 75 :VIKSIGVDK 1bxyA 22 :ALKALGLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26208 # 1wu7A.75.247 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)I79 (1wu7A)Y252 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1wu7A)K255 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 75 :VIKS 1wu7A 248 :LLAS T0287 80 :GV 1wu7A 253 :GV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26210 # 1q0uA.75.17 read from T0287.t06.many.frag # found chain 1q0uA in template set T0287 75 :VIKSIGVDK 1q0uA 18 :AIKTLRFYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26211 # 2ar0A.75.75 read from T0287.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)G80 (2ar0A)G81 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKSI 2ar0A 76 :MLVHL T0287 81 :VDK 2ar0A 82 :EDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26213 # 1bc5A.75.41 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 75 :VIKSIGVDK 1bc5A 57 :RLRALGLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26214 # 1w0hA.75.161 read from T0287.t06.many.frag # found chain 1w0hA in training set Warning: unaligning (T0287)I79 (1w0hA)L284 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1w0hA)Y288 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKS 1w0hA 280 :MLEK T0287 80 :GVD 1w0hA 285 :GMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=26216 # 1hw1A.75.198 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 75 :VIKS 1hw1A 199 :LCSE T0287 81 :VDK 1hw1A 205 :HDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26218 # 2f8lA.75.72 read from T0287.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. T0287 75 :VIKSI 2f8lA 61 :SYESI T0287 81 :VDK 2f8lA 67 :LEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26220 # 1ejbA.75.40 read from T0287.t06.many.frag # found chain 1ejbA in template set T0287 75 :VIKSIGVDK 1ejbA 41 :RMASLGVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26221 # 1f5mA.75.55 read from T0287.t06.many.frag # found chain 1f5mA in template set T0287 75 :VIKSIGVDK 1f5mA 56 :AYKSLAVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26222 # 2cx1A.75.81 read from T0287.t06.many.frag # found chain 2cx1A in template set T0287 75 :VIKSIGVDK 2cx1A 81 :CLKAFGVDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26223 # 1wteA.75.42 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 75 :VIKS 1wteA 43 :IFDY T0287 80 :GVD 1wteA 48 :SLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=26225 # 8abp.75.123 read from T0287.t06.many.frag # found chain 8abp in training set T0287 75 :VIKSIGVDK 8abp 124 :EMQKRGWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26226 # 1p4cA.75.335 read from T0287.t06.many.frag # found chain 1p4cA in training set Warning: unaligning (T0287)I79 (1p4cA)I340 because G (3-10) conformation "forbidden" or filtered. T0287 75 :VIKS 1p4cA 336 :TLAQ T0287 80 :GVDK 1p4cA 341 :GCPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26228 # 1iuqA.76.47 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 76 :IKSIGVDKF 1iuqA 49 :VIESGNPKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26229 # 1iirA.76.173 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 76 :IKSIGVDKF 1iirA 174 :RDAIGLPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26230 # 1smbA.76.20 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 76 :IKSIGVDKF 1smbA 21 :RQKHGVPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26231 # 1kr7A.76.90 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)F84 (1kr7A)L98 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKSIGVDK 1kr7A 90 :CSAHGAPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26232 # 1psrA.76.45 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 76 :IKSIGVDKF 1psrA 46 :CDKKGTNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26233 # 1pa7A.76.81 read from T0287.t06.many.frag # found chain 1pa7A in training set T0287 76 :IKSIGVDKF 1pa7A 82 :FKRMGVDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26234 # 1bc5A.76.42 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 76 :IKSIGVDKF 1bc5A 58 :LRALGLDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26235 # 1z3eB.76.23 read from T0287.t06.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1z3eB 266 :LKR T0287 80 :GVDKF 1z3eB 270 :GINTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26237 # 2ar0A.76.76 read from T0287.t06.many.frag # found chain 2ar0A in template set T0287 76 :IKSIGVDKF 2ar0A 77 :LVHLGEDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26238 # 2f22A.76.126 read from T0287.t06.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 2f22A 126 :LKQ T0287 80 :GVDKF 2f22A 130 :GINLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26240 # 1k8kG.76.82 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 76 :IKSIGVDKF 1k8kG 83 :LISFKANDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26241 # 1tqgA.76.51 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 76 :IKSIGVDKF 1tqgA 51 :AGTMGFSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26242 # 2fokA.76.331 read from T0287.t06.many.frag # found chain 2fokA in template set T0287 76 :IKSIGVDKF 2fokA 332 :LKKLGFDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26243 # 1c1kA.76.123 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 76 :IKSIGVDKF 1c1kA 124 :SKKVEVSAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26244 # 1uocA.76.232 read from T0287.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)D82 (1uocA)P239 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGV 1uocA 233 :ADELGL T0287 83 :KF 1uocA 240 :RF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26246 # 1y0zA.76.80 read from T0287.t06.many.frag # found chain 1y0zA in template set Warning: unaligning (T0287)K83 (1y0zA)E88 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1y0zA 81 :VEAFGFD T0287 84 :F 1y0zA 89 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26248 # 1wteA.76.43 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1wteA 44 :FDYHSLN T0287 84 :F 1wteA 52 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=26250 # 1ib2A.76.150 read from T0287.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKSI 1ib2A 978 :IECV T0287 81 :VDKF 1ib2A 983 :PQSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26252 # 1ejbA.76.41 read from T0287.t06.many.frag # found chain 1ejbA in template set Warning: unaligning (T0287)I79 (1ejbA)L45 because G (3-10) conformation "forbidden" or filtered. T0287 76 :IKS 1ejbA 42 :MAS T0287 80 :GVDKF 1ejbA 46 :GVEEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26254 # 2f5xA.76.303 read from T0287.t06.many.frag # found chain 2f5xA in template set Warning: unaligning (T0287)F84 because last residue in template chain is (2f5xA)Q300 T0287 76 :IKSIGVDK 2f5xA 292 :FKKAGVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26255 # 1wu7A.76.248 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)I79 (1wu7A)Y252 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 76 :IKS 1wu7A 249 :LAS T0287 80 :GVD 1wu7A 253 :GVK T0287 84 :F 1wu7A 257 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26258 # 1usgA.76.290 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 76 :IKSIGVDKF 1usgA 291 :LERTGSDEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26259 # 2f8lA.76.73 read from T0287.t06.many.frag # found chain 2f8lA in template set T0287 76 :IKSIGVDKF 2f8lA 62 :YESIELENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26260 # 1hw1A.76.199 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 76 :IKS 1hw1A 200 :CSE T0287 81 :VDKF 1hw1A 205 :HDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26262 # 2c5uA.76.329 read from T0287.t06.many.frag # found chain 2c5uA in template set T0287 76 :IKSIGVDKF 2c5uA 329 :AKGAGMDHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26263 # 1rp4A.76.271 read from T0287.t06.many.frag # found chain 1rp4A in template set T0287 76 :IKSIGVDKF 1rp4A 310 :ISQLDTKIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26264 # 1oqjA.76.48 read from T0287.t06.many.frag # found chain 1oqjA in training set T0287 76 :IKSIGVDKF 1oqjA 134 :VHLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26265 # 2cx1A.76.82 read from T0287.t06.many.frag # found chain 2cx1A in template set T0287 76 :IKSIGVDKF 2cx1A 82 :LKAFGVDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26266 # 1ojrA.76.259 read from T0287.t06.many.frag # found chain 1ojrA in training set Warning: unaligning (T0287)I79 (1ojrA)F263 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1ojrA)T266 because E (beta_S) conformation "forbidden" or filtered. T0287 76 :IKS 1ojrA 260 :GKR T0287 80 :GV 1ojrA 264 :GV T0287 83 :KF 1ojrA 267 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26269 # 1a62.76.17 read from T0287.t06.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)K83 (1a62)N25 because L (left) conformation "forbidden" or filtered. T0287 76 :IKSIGVD 1a62 18 :GENMGLE T0287 84 :F 1a62 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26271 # 1iuqA.77.48 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 77 :KSIGVDKFK 1iuqA 50 :IESGNPKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26272 # 1iirA.77.174 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 77 :KSIGVDKFK 1iirA 175 :DAIGLPPVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26273 # 1k8kG.77.83 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 77 :KSIGVDKFK 1k8kG 84 :ISFKANDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26274 # 1bc5A.77.43 read from T0287.t06.many.frag # found chain 1bc5A in template set Warning: unaligning (T0287)I79 (1bc5A)L61 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1bc5A 59 :RA T0287 80 :GVDKFK 1bc5A 62 :GLDDFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26276 # 1kr7A.77.91 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGV 1kr7A 91 :SAHGA T0287 83 :KFK 1kr7A 97 :DLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26278 # 1smbA.77.21 read from T0287.t06.many.frag # found chain 1smbA in training set T0287 77 :KSIGVDKFK 1smbA 22 :QKHGVPPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26279 # 1hw1A.77.200 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KS 1hw1A 201 :SE T0287 81 :VDKFK 1hw1A 205 :HDQVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26281 # 1tqgA.77.52 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 77 :KSIGVDKFK 1tqgA 52 :GTMGFSSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26282 # 1wteA.77.44 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)I79 (1wteA)H47 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 1wteA 45 :DY T0287 80 :GVDKFK 1wteA 48 :SLNDFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26284 # 1z3eB.77.24 read from T0287.t06.many.frag # found chain 1z3eB in template set T0287 77 :KSIGVDKFK 1z3eB 267 :KRAGINTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26285 # 1pa7A.77.82 read from T0287.t06.many.frag # found chain 1pa7A in training set Warning: unaligning (T0287)K85 (1pa7A)I91 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSIGVDKF 1pa7A 83 :KRMGVDKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26286 # 1ib2A.77.151 read from T0287.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 1ib2A 979 :ECV T0287 81 :VDKFK 1ib2A 983 :PQSLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26288 # 1psrA.77.46 read from T0287.t06.many.frag # found chain 1psrA in training set T0287 77 :KSIGVDKFK 1psrA 47 :DKKGTNYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26289 # 1c1kA.77.124 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 77 :KSIGVDKFK 1c1kA 125 :KKVEVSAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26290 # 2f22A.77.127 read from T0287.t06.many.frag # found chain 2f22A in template set T0287 77 :KSIGVDKFK 2f22A 127 :KQSGINLPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26291 # 1uocA.77.233 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 77 :KSIGVDKFK 1uocA 234 :DELGLPRFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26292 # 2ar0A.77.77 read from T0287.t06.many.frag # found chain 2ar0A in template set Warning: unaligning (T0287)D82 (2ar0A)D83 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSIGV 2ar0A 78 :VHLGE T0287 83 :KFK 2ar0A 84 :DKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26294 # 2c5uA.77.330 read from T0287.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)V81 (2c5uA)M334 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSIG 2c5uA 330 :KGAG T0287 82 :DKFK 2c5uA 335 :DHLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26296 # 2f8lA.77.74 read from T0287.t06.many.frag # found chain 2f8lA in template set Warning: unaligning (T0287)G80 (2f8lA)E66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K85 (2f8lA)S71 because P (beta_P) conformation "forbidden" or filtered. T0287 77 :KSI 2f8lA 63 :ESI T0287 81 :VDKF 2f8lA 67 :LENF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26298 # 1usgA.77.291 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 77 :KSIGVDKFK 1usgA 292 :ERTGSDEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26299 # 2fokA.77.332 read from T0287.t06.many.frag # found chain 2fokA in template set Warning: unaligning (T0287)I79 (2fokA)L335 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KS 2fokA 333 :KK T0287 80 :GVDKFK 2fokA 336 :GFDEVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26301 # 1wu7A.77.249 read from T0287.t06.many.frag # found chain 1wu7A in template set Warning: unaligning (T0287)K83 (1wu7A)N256 because L (left) conformation "forbidden" or filtered. T0287 77 :KSIGVD 1wu7A 250 :ASYGVK T0287 84 :FK 1wu7A 257 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26303 # 1ezwA.77.275 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1ezwA)D282 because N (gamma') conformation "forbidden" or filtered. T0287 77 :KSIG 1ezwA 276 :EAIG T0287 82 :D 1ezwA 281 :G T0287 84 :FK 1ezwA 283 :FG Number of specific fragments extracted= 3 number of extra gaps= 2 total=26306 # 1oqjA.77.49 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)K85 (1oqjA)K143 because L (left) conformation "forbidden" or filtered. T0287 77 :KSIGVDKF 1oqjA 135 :HLAGKSTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26307 # 1jy1A.77.183 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 77 :KSIGVDKFK 1jy1A 328 :TAYNAPSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26308 # 1h6gA.77.154 read from T0287.t06.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)S78 (1h6gA)E532 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 77 :K 1h6gA 531 :Q T0287 81 :VDKFK 1h6gA 535 :VDGLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26310 # 1a62.77.18 read from T0287.t06.many.frag # found chain 1a62 in training set Warning: unaligning (T0287)D82 (1a62)E24 because Y (epsilon') conformation "forbidden" or filtered. T0287 77 :KSIGV 1a62 19 :ENMGL T0287 83 :KFK 1a62 25 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26312 # 1yviA.77.86 read from T0287.t06.many.frag # found chain 1yviA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE in next template residue (1yviA)Q92 Warning: unaligning (T0287)D82 because of BadResidue code BAD_PEPTIDE at template residue (1yviA)Q92 T0287 77 :KSIG 1yviA 87 :ASVG T0287 83 :KFK 1yviA 93 :KVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26314 # 1q9uA.77.103 read from T0287.t06.many.frag # found chain 1q9uA in training set T0287 77 :KSIGVDKFK 1q9uA 101 :GMMNDPALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26315 # 1sedA.77.62 read from T0287.t06.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)F84 (1sedA)F68 because G (3-10) conformation "forbidden" or filtered. T0287 77 :KSIGVDK 1sedA 61 :KAQGFVT T0287 85 :K 1sedA 69 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26317 # 1k8kG.78.84 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 78 :SIGVDKFKK 1k8kG 85 :SFKANDIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26318 # 1bc5A.78.44 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 78 :SIGVDKFKK 1bc5A 60 :ALGLDDFGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26319 # 1iuqA.78.49 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 78 :SIGVDKFKK 1iuqA 51 :ESGNPKADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26320 # 1wteA.78.45 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 78 :SIGVD 1wteA 46 :YHSLN T0287 84 :FKK 1wteA 52 :FDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26322 # 1hw1A.78.201 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 78 :S 1hw1A 202 :E T0287 80 :GVDKFKK 1hw1A 204 :AHDQVYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26324 # 1kr7A.78.92 read from T0287.t06.many.frag # found chain 1kr7A in training set T0287 78 :SIGVDKFKK 1kr7A 92 :AHGAPDLGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26325 # 1iirA.78.175 read from T0287.t06.many.frag # found chain 1iirA in training set T0287 78 :SIGVDKFKK 1iirA 176 :AIGLPPVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26326 # 1ib2A.78.152 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 78 :SIGVDKFKK 1ib2A 980 :CVQPQSLQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26327 # 1tqgA.78.53 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 78 :SIGVDKFKK 1tqgA 53 :TMGFSSMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26328 # 1z3eB.78.25 read from T0287.t06.many.frag # found chain 1z3eB in template set Warning: unaligning (T0287)I79 (1z3eB)A269 because G (3-10) conformation "forbidden" or filtered. T0287 78 :S 1z3eB 268 :R T0287 80 :GVDKFKK 1z3eB 270 :GINTVQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26330 # 1h6gA.78.155 read from T0287.t06.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)I79 (1h6gA)K533 because L (left) conformation "forbidden" or filtered. T0287 78 :S 1h6gA 532 :E T0287 80 :GVDKFKK 1h6gA 534 :DVDGLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26332 # 1c1kA.78.125 read from T0287.t06.many.frag # found chain 1c1kA in training set Warning: unaligning (T0287)K83 (1c1kA)A131 because E (beta_S) conformation "forbidden" or filtered. T0287 78 :SIGVD 1c1kA 126 :KVEVS T0287 84 :FKK 1c1kA 132 :FKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26334 # 1jy1A.78.184 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 78 :SIGVDKFKK 1jy1A 329 :AYNAPSLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26335 # 1smbA.78.22 read from T0287.t06.many.frag # found chain 1smbA in training set Warning: unaligning (T0287)D82 (1smbA)P27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1smbA)K33 T0287 78 :SIGV 1smbA 23 :KHGV T0287 83 :KFK 1smbA 28 :PLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26337 # 1sedA.78.63 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 78 :SIGVDKFKK 1sedA 62 :AQGFVTFDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26338 # 2aeuA.78.252 read from T0287.t06.many.frag # found chain 2aeuA in template set Warning: unaligning (T0287)G80 (2aeuA)N255 because E (beta_S) conformation "forbidden" or filtered. T0287 78 :SI 2aeuA 253 :NF T0287 81 :VDKFKK 2aeuA 256 :LERIRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26340 # 2c5uA.78.331 read from T0287.t06.many.frag # found chain 2c5uA in template set T0287 78 :SIGVDKFKK 2c5uA 331 :GAGMDHLFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26341 # 1ezwA.78.276 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 78 :SIGV 1ezwA 277 :AIGK T0287 83 :KFKK 1ezwA 282 :DFGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26343 # 1u00A.78.186 read from T0287.t06.many.frag # found chain 1u00A in template set Warning: unaligning (T0287)G80 (1u00A)D577 because D (zeta) conformation "forbidden" or filtered. T0287 78 :SI 1u00A 575 :GD T0287 81 :VDKFKK 1u00A 578 :VDAIEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26345 # 1usgA.78.292 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 78 :SIGVDKFKK 1usgA 293 :RTGSDEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26346 # 1psrA.78.47 read from T0287.t06.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)D82 (1psrA)N52 because N (gamma') conformation "forbidden" or filtered. T0287 78 :SIGV 1psrA 48 :KKGT T0287 83 :KFKK 1psrA 53 :YLAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26348 # 1sqsA.78.217 read from T0287.t06.many.frag # found chain 1sqsA in training set T0287 78 :SIGVDKFKK 1sqsA 218 :LFEANSLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26349 # 1zhxA.78.329 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 78 :SIGVDKFKK 1zhxA 326 :LGDFNLIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26350 # 1owlA.78.266 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 78 :SIGVDKFKK 1owlA 267 :LSRSDEARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26351 # 2f22A.78.128 read from T0287.t06.many.frag # found chain 2f22A in template set Warning: unaligning (T0287)I79 (2f22A)S129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (2f22A)N132 because P (beta_P) conformation "forbidden" or filtered. T0287 78 :S 2f22A 128 :Q T0287 80 :GV 2f22A 130 :GI T0287 83 :KFKK 2f22A 133 :LPKQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=26354 # 1lo7A.78.40 read from T0287.t06.many.frag # found chain 1lo7A in training set T0287 78 :SIGVDKFKK 1lo7A 41 :KCGLPPWRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26355 # 2fbqA.78.121 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 78 :SIGVDKFKK 2fbqA 120 :SQSQGHLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26356 # 1uvjA.78.179 read from T0287.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 78 :SIGV 1uvjA 180 :LMLQ T0287 83 :KFKK 1uvjA 185 :KFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26358 # 1uocA.78.234 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 78 :SIGVDKFKK 1uocA 235 :ELGLPRFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26359 # 1q9uA.78.104 read from T0287.t06.many.frag # found chain 1q9uA in training set T0287 78 :SIGVDKFKK 1q9uA 102 :MMNDPALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26360 # 1bc5A.79.45 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 79 :IGVDKFKKV 1bc5A 61 :LGLDDFGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26361 # 1k8kG.79.85 read from T0287.t06.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)G80 (1k8kG)K87 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 1k8kG 86 :F T0287 81 :VDKFKKV 1k8kG 88 :ANDIEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26363 # 1wteA.79.46 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 79 :IGVD 1wteA 47 :HSLN T0287 84 :FKKV 1wteA 52 :FDEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26365 # 1hw1A.79.202 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)I79 (1hw1A)G203 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1hw1A 204 :AHDQVYET Number of specific fragments extracted= 1 number of extra gaps= 1 total=26366 # 1h6gA.79.156 read from T0287.t06.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 79 :I 1h6gA 533 :K T0287 81 :VDKFKKV 1h6gA 535 :VDGLDRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26368 # 1sedA.79.64 read from T0287.t06.many.frag # found chain 1sedA in template set Warning: unaligning (T0287)I79 (1sedA)Q63 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1sedA 64 :GFVTFDKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26369 # 1ib2A.79.153 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 79 :IGVDKFKKV 1ib2A 981 :VQPQSLQFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26370 # 1kr7A.79.93 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :IGV 1kr7A 93 :HGA T0287 84 :FKKV 1kr7A 98 :LGHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26372 # 1iuqA.79.50 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 79 :IGVDKFKKV 1iuqA 52 :SGNPKADEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26373 # 1iirA.79.176 read from T0287.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)I79 (1iirA)I177 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1iirA)P181 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GVD 1iirA 178 :GLP T0287 84 :FKKV 1iirA 182 :VEDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26375 # 2aeuA.79.253 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 79 :IGVDKFKKV 2aeuA 254 :FNLERIRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26376 # 1uvjA.79.180 read from T0287.t06.many.frag # found chain 1uvjA in template set T0287 79 :IGVDKFKKV 1uvjA 181 :MLQGKFDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26377 # 2fbqA.79.122 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 79 :IGVDKFKKV 2fbqA 121 :QSQGHLRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26378 # 1zhxA.79.330 read from T0287.t06.many.frag # found chain 1zhxA in template set Warning: unaligning (T0287)I79 (1zhxA)G327 because L (left) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1zhxA 328 :DFNLIAKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26379 # 1u00A.79.187 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 79 :IGVDKFKKV 1u00A 576 :DDVDAIEQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26380 # 1ezwA.79.277 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 79 :IGV 1ezwA 278 :IGK T0287 83 :KFKKV 1ezwA 282 :DFGTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26382 # 2f6kA.79.131 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 79 :IGVDKFKKV 2f6kA 132 :FGSPVLERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26383 # 1jy1A.79.185 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 79 :IGVDKFKKV 1jy1A 330 :YNAPSLKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26384 # 1z3eB.79.26 read from T0287.t06.many.frag # found chain 1z3eB in template set T0287 79 :IGVDKFKKV 1z3eB 269 :AGINTVQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26385 # 1sqsA.79.218 read from T0287.t06.many.frag # found chain 1sqsA in training set T0287 79 :IGVDKFKKV 1sqsA 219 :FEANSLEEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26386 # 1owlA.79.267 read from T0287.t06.many.frag # found chain 1owlA in training set Warning: unaligning (T0287)G80 (1owlA)R269 because G (3-10) conformation "forbidden" or filtered. T0287 79 :I 1owlA 268 :S T0287 81 :VDKFKKV 1owlA 270 :SDEARNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26388 # 1z3xA.79.107 read from T0287.t06.many.frag # found chain 1z3xA in template set T0287 79 :IGVDKFKKV 1z3xA 105 :LVAEKFEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26389 # 1tqgA.79.54 read from T0287.t06.many.frag # found chain 1tqgA in training set T0287 79 :IGVDKFKKV 1tqgA 54 :MGFSSMAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26390 # 1xm9A.79.430 read from T0287.t06.many.frag # found chain 1xm9A in template set T0287 79 :IGVDKFKKV 1xm9A 674 :SASPKAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26391 # 1c1kA.79.126 read from T0287.t06.many.frag # found chain 1c1kA in training set T0287 79 :IGVDKFKKV 1c1kA 127 :VEVSAFKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26392 # 1usgA.79.293 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 79 :IGVDKFKKV 1usgA 294 :TGSDEPLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26393 # 1rwhA.79.27 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 79 :IGVDKFKKV 1rwhA 28 :AGDPDFAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26394 # 2anuA.79.76 read from T0287.t06.many.frag # found chain 2anuA in template set Warning: unaligning (T0287)G80 (2anuA)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 79 :I 2anuA 65 :I T0287 81 :VDKFKKV 2anuA 67 :EDKFQDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26396 # 2c5uA.79.332 read from T0287.t06.many.frag # found chain 2c5uA in template set Warning: unaligning (T0287)I79 (2c5uA)A332 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 2c5uA 333 :GMDHLFGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26397 # 1psrA.79.48 read from T0287.t06.many.frag # found chain 1psrA in training set Warning: unaligning (T0287)I79 (1psrA)K49 because G (3-10) conformation "forbidden" or filtered. T0287 80 :GVDKFKKV 1psrA 50 :GTNYLADV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26398 # 1bc5A.80.46 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 80 :GVDKFKKVY 1bc5A 62 :GLDDFGRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26399 # 1k8kG.80.86 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 80 :GVDKFKKVY 1k8kG 87 :KANDIEKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26400 # 1sedA.80.65 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 80 :GVDKFKKVY 1sedA 64 :GFVTFDKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26401 # 1ib2A.80.154 read from T0287.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)G80 (1ib2A)Q982 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1ib2A 983 :PQSLQFII Number of specific fragments extracted= 1 number of extra gaps= 1 total=26402 # 1wteA.80.47 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1wteA 48 :SLN T0287 84 :FKKVY 1wteA 52 :FDELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26404 # 1h6gA.80.157 read from T0287.t06.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)G80 (1h6gA)D534 because N (gamma') conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1h6gA 535 :VDGLDRTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26405 # 1hw1A.80.203 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)G80 (1hw1A)A204 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1hw1A 205 :HDQVYETV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26406 # 1uvjA.80.181 read from T0287.t06.many.frag # found chain 1uvjA in template set T0287 80 :GVDKFKKVY 1uvjA 182 :LQGKFDDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26407 # 2f6kA.80.132 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 80 :GVDKFKKVY 2f6kA 133 :GSPVLERVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26408 # 1ezwA.80.278 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. T0287 80 :G 1ezwA 279 :G T0287 82 :DKFKKVY 1ezwA 281 :GDFGTAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26410 # 1rwhA.80.28 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 80 :GVDKFKKVY 1rwhA 29 :GDPDFAKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26411 # 2aeuA.80.254 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 80 :GVDKFKKVY 2aeuA 255 :NLERIRKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26412 # 1zhxA.80.331 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 80 :GVDKFKKVY 1zhxA 328 :DFNLIAKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26413 # 1z3xA.80.108 read from T0287.t06.many.frag # found chain 1z3xA in template set T0287 80 :GVDKFKKVY 1z3xA 106 :VAEKFEAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26414 # 2anuA.80.77 read from T0287.t06.many.frag # found chain 2anuA in template set Warning: unaligning (T0287)G80 (2anuA)T66 because P (beta_P) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 2anuA 67 :EDKFQDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26415 # 1owlA.80.268 read from T0287.t06.many.frag # found chain 1owlA in training set Warning: unaligning (T0287)G80 (1owlA)R269 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDKFKKVY 1owlA 270 :SDEARNSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26416 # 1u00A.80.188 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 80 :GVDKFKKVY 1u00A 577 :DVDAIEQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26417 # 2fbqA.80.123 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 80 :GVDKFKKVY 2fbqA 122 :SQGHLRKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26418 # 1sqsA.80.219 read from T0287.t06.many.frag # found chain 1sqsA in training set Warning: unaligning (T0287)K83 (1sqsA)S223 because Y (epsilon') conformation "forbidden" or filtered. T0287 80 :GVD 1sqsA 220 :EAN T0287 84 :FKKVY 1sqsA 224 :LEEWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26420 # 1kr7A.80.94 read from T0287.t06.many.frag # found chain 1kr7A in training set Warning: unaligning (T0287)D82 (1kr7A)P96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K83 (1kr7A)D97 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GV 1kr7A 94 :GA T0287 84 :FKKVY 1kr7A 98 :LGHAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26422 # 1iuqA.80.51 read from T0287.t06.many.frag # found chain 1iuqA in training set T0287 80 :GVDKFKKVY 1iuqA 53 :GNPKADEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26423 # 1e9rA.80.164 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 80 :GVDKFKKVY 1e9rA 235 :GTPSMRELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26424 # 1jy1A.80.186 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 80 :GVDKFKKVY 1jy1A 331 :NAPSLKEWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26425 # 1usgA.80.294 read from T0287.t06.many.frag # found chain 1usgA in training set T0287 80 :GVDKFKKVY 1usgA 295 :GSDEPLALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26426 # 1iirA.80.177 read from T0287.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)D82 (1iirA)P180 because P (beta_P) conformation "forbidden" or filtered. T0287 80 :GV 1iirA 178 :GL T0287 83 :KFKKVY 1iirA 181 :PVEDIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26428 # 1j79A.80.145 read from T0287.t06.many.frag # found chain 1j79A in training set Warning: unaligning (T0287)G80 because of BadResidue code BAD_PEPTIDE in next template residue (1j79A)I147 Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (1j79A)I147 T0287 82 :DKFKKVY 1j79A 148 :DIFDREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26429 # 1rcwA.80.192 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 80 :GVDKFKKVY 1rcwA 193 :LKDDADKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26430 # 2cc3A.80.25 read from T0287.t06.many.frag # found chain 2cc3A in template set T0287 80 :GVDKFKKVY 2cc3A 113 :DADTAQYAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26431 # 2bz1A.80.96 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 80 :GVDKFKKVY 2bz1A 97 :GLLNKIRAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26432 # 1gvdA.80.21 read from T0287.t06.many.frag # found chain 1gvdA in training set T0287 80 :GVDKFKKVY 1gvdA 111 :GPKRWSVIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26433 # 1k8kG.81.87 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 81 :VDKFKKVYR 1k8kG 88 :ANDIEKAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26434 # 1bc5A.81.47 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 81 :VDKFKKVYR 1bc5A 63 :LDDFGRYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26435 # 1h6gA.81.158 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 81 :VDKFKKVYR 1h6gA 535 :VDGLDRTAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26436 # 1sedA.81.66 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 81 :VDKFKKVYR 1sedA 65 :FVTFDKLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26437 # 1hw1A.81.204 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 81 :VDKFKKVYR 1hw1A 205 :HDQVYETVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26438 # 2f6kA.81.133 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 81 :VDKFKKVYR 2f6kA 134 :SPVLERVYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26439 # 1ib2A.81.155 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 81 :VDKFKKVYR 1ib2A 983 :PQSLQFIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=26440 # 2aeuA.81.255 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 81 :VDKFKKVYR 2aeuA 256 :LERIRKAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26441 # 1uvjA.81.182 read from T0287.t06.many.frag # found chain 1uvjA in template set T0287 81 :VDKFKKVYR 1uvjA 183 :QGKFDDAYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26442 # 1rwhA.81.29 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 81 :VDKFKKVYR 1rwhA 30 :DPDFAKAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26443 # 1wteA.81.48 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)K83 (1wteA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0287 81 :VD 1wteA 49 :LN T0287 84 :FKKVYR 1wteA 52 :FDELVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26445 # 1pb7A.81.187 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 81 :VDKFKKVYR 1pb7A 188 :QVELSTMYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26446 # 1ezwA.81.279 read from T0287.t06.many.frag # found chain 1ezwA in training set Warning: unaligning (T0287)V81 (1ezwA)K280 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D82 (1ezwA)G281 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYR 1ezwA 282 :DFGTAIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26447 # 1z3xA.81.109 read from T0287.t06.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 81 :V 1z3xA 107 :A T0287 83 :KFKKVYR 1z3xA 109 :KFEAADR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26449 # 1zhxA.81.332 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 81 :VDKFKKVYR 1zhxA 329 :FNLIAKTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26450 # 1u00A.81.189 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 81 :VDKFKKVYR 1u00A 578 :VDAIEQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26451 # 2anuA.81.78 read from T0287.t06.many.frag # found chain 2anuA in template set T0287 81 :VDKFKKVYR 2anuA 67 :EDKFQDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26452 # 2fbqA.81.124 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 81 :VDKFKKVYR 2fbqA 123 :QGHLRKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26453 # 1lugA.81.151 read from T0287.t06.many.frag # found chain 1lugA in training set T0287 81 :VDKFKKVYR 1lugA 153 :KPGLQKVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26454 # 1owlA.81.269 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 81 :VDKFKKVYR 1owlA 270 :SDEARNSIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26455 # 1m2oA.81.541 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 81 :VDKFKKVYR 1m2oA 542 :TDDGADVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26456 # 1e9rA.81.165 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 81 :VDKFKKVYR 1e9rA 236 :TPSMRELFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26457 # 2b6cA.81.121 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)V81 because of BadResidue code BAD_PEPTIDE at template residue (2b6cA)L119 T0287 82 :DKFKKVYR 2b6cA 120 :TELPTIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26458 # 1aa7A.81.105 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 81 :VDKFKKVYR 1aa7A 106 :EITFHGAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26459 # 1jy1A.81.187 read from T0287.t06.many.frag # found chain 1jy1A in training set T0287 81 :VDKFKKVYR 1jy1A 332 :APSLKEWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=26460 # 2bz1A.81.97 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 81 :VDKFKKVYR 2bz1A 98 :LLNKIRAYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26461 # 1yw3A.81.115 read from T0287.t06.many.frag # found chain 1yw3A in template set T0287 81 :VDKFKKVYR 1yw3A 116 :AENFQPWSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26462 # 2ae5B.81.320 read from T0287.t06.many.frag # found chain 2ae5B in template set T0287 81 :VDKFKKVYR 2ae5B 321 :DPEVQAAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26463 # 1iirA.81.178 read from T0287.t06.many.frag # found chain 1iirA in training set Warning: unaligning (T0287)K85 (1iirA)E183 because G (3-10) conformation "forbidden" or filtered. T0287 81 :VDKF 1iirA 179 :LPPV T0287 86 :KVYR 1iirA 184 :DIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26465 # 2cc3A.81.26 read from T0287.t06.many.frag # found chain 2cc3A in template set T0287 81 :VDKFKKVYR 2cc3A 114 :ADTAQYAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26466 # 1k8kG.82.88 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 82 :DKFKKVYRL 1k8kG 89 :NDIEKAVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26467 # 1h6gA.82.159 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 82 :DKFKKVYRL 1h6gA 536 :DGLDRTAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26468 # 1hw1A.82.205 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 82 :DKFKKVYRL 1hw1A 206 :DQVYETVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26469 # 1sedA.82.67 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 82 :DKFKKVYRL 1sedA 66 :VTFDKLLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26470 # 2f6kA.82.134 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 82 :DKFKKVYRL 2f6kA 135 :PVLERVYQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26471 # 1ib2A.82.156 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 82 :DKFKKVYRL 1ib2A 984 :QSLQFIIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26472 # 1m2oA.82.542 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 82 :DKFKKVYRL 1m2oA 543 :DDGADVIRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26473 # 1pb7A.82.188 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 82 :DKFKKVYRL 1pb7A 189 :VELSTMYRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26474 # 1bc5A.82.48 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 82 :DKFKKVYRL 1bc5A 64 :DDFGRYLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26475 # 1rwhA.82.30 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 82 :DKFKKVYRL 1rwhA 31 :PDFAKAITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26476 # 2aeuA.82.256 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 82 :DKFKKVYRL 2aeuA 257 :ERIRKAFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=26477 # 1ezwA.82.280 read from T0287.t06.many.frag # found chain 1ezwA in training set T0287 82 :DKFKKVYRL 1ezwA 281 :GDFGTAIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26478 # 1uvjA.82.183 read from T0287.t06.many.frag # found chain 1uvjA in template set Warning: unaligning (T0287)D82 (1uvjA)G184 because T (delta_L) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1uvjA 185 :KFDDAYQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26479 # 1zhxA.82.333 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 82 :DKFKKVYRL 1zhxA 330 :NLIAKTKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26480 # 1z3xA.82.110 read from T0287.t06.many.frag # found chain 1z3xA in template set Warning: unaligning (T0287)D82 (1z3xA)E108 because L (left) conformation "forbidden" or filtered. T0287 83 :KFKKVYRL 1z3xA 109 :KFEAADRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26481 # 1e9rA.82.166 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 82 :DKFKKVYRL 1e9rA 237 :PSMRELFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26482 # 2b6cA.82.122 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 82 :DKFKKVYRL 2b6cA 120 :TELPTIFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26483 # 1u00A.82.190 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 82 :DKFKKVYRL 1u00A 579 :DAIEQAIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26484 # 1lugA.82.152 read from T0287.t06.many.frag # found chain 1lugA in training set T0287 82 :DKFKKVYRL 1lugA 154 :PGLQKVVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26485 # 2bz1A.82.98 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 82 :DKFKKVYRL 2bz1A 99 :LNKIRAYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26486 # 1sz9A.82.87 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 82 :DKFKKVYRL 1sz9A 88 :NLYKRTYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26487 # 1aa7A.82.106 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 82 :DKFKKVYRL 1aa7A 107 :ITFHGAKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26488 # 1wteA.82.49 read from T0287.t06.many.frag # found chain 1wteA in template set T0287 82 :DKFKKVYRL 1wteA 50 :NDFDELVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26489 # 1owlA.82.270 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 82 :DKFKKVYRL 1owlA 271 :DEARNSIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26490 # 2ae5B.82.321 read from T0287.t06.many.frag # found chain 2ae5B in template set T0287 82 :DKFKKVYRL 2ae5B 322 :PEVQAAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26491 # 1vykA.82.127 read from T0287.t06.many.frag # found chain 1vykA in template set T0287 82 :DKFKKVYRL 1vykA 128 :TEAEKYYGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26492 # 1j93A.82.167 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 82 :DKFKKVYRL 1j93A 167 :KNFTKIKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26493 # 1xkpA.82.118 read from T0287.t06.many.frag # found chain 1xkpA in training set T0287 82 :DKFKKVYRL 1xkpA 150 :PELAHLSHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26494 # 1qs1A.82.304 read from T0287.t06.many.frag # found chain 1qs1A in training set T0287 82 :DKFKKVYRL 1qs1A 305 :QDYKEINNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26495 # 1ae9A.82.6 read from T0287.t06.many.frag # found chain 1ae9A in template set T0287 82 :DKFKKVYRL 1ae9A 183 :DEYLKIYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26496 # 1k8kG.83.89 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 83 :KFKKVYRLL 1k8kG 90 :DIEKAVQSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26497 # 1hw1A.83.206 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 83 :KFKKVYRLL 1hw1A 207 :QVYETVRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26498 # 1m2oA.83.543 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 83 :KFKKVYRLL 1m2oA 544 :DGADVIRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26499 # 1h6gA.83.160 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 83 :KFKKVYRLL 1h6gA 537 :GLDRTAGAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26500 # 2f6kA.83.135 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 83 :KFKKVYRLL 2f6kA 136 :VLERVYQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26501 # 1sedA.83.68 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 83 :KFKKVYRLL 1sedA 67 :TFDKLLALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26502 # 1pb7A.83.189 read from T0287.t06.many.frag # found chain 1pb7A in training set Warning: unaligning (T0287)F84 (1pb7A)L191 because G (3-10) conformation "forbidden" or filtered. T0287 83 :K 1pb7A 190 :E T0287 85 :KKVYRLL 1pb7A 192 :STMYRHM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26504 # 1sz9A.83.88 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 83 :KFKKVYRLL 1sz9A 89 :LYKRTYLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26505 # 1rwhA.83.31 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 83 :KFKKVYRLL 1rwhA 32 :DFAKAITAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26506 # 1ib2A.83.157 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 83 :KFKKVYRLL 1ib2A 985 :SLQFIIDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26507 # 1bc5A.83.49 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 83 :KFKKVYRLL 1bc5A 65 :DFGRYLSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=26508 # 2aeuA.83.257 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 83 :KFKKVYRLL 2aeuA 258 :RIRKAFERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26509 # 1e9rA.83.167 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 83 :KFKKVYRLL 1e9rA 238 :SMRELFHWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26510 # 1u00A.83.191 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 83 :KFKKVYRLL 1u00A 580 :AIEQAIKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26511 # 1zhxA.83.334 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 83 :KFKKVYRLL 1zhxA 331 :LIAKTKTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26512 # 1vykA.83.128 read from T0287.t06.many.frag # found chain 1vykA in template set T0287 83 :KFKKVYRLL 1vykA 129 :EAEKYYGQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26513 # 1owlA.83.271 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 83 :KFKKVYRLL 1owlA 272 :EARNSIRVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26514 # 1z3xA.83.111 read from T0287.t06.many.frag # found chain 1z3xA in template set T0287 83 :KFKKVYRLL 1z3xA 109 :KFEAADRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26515 # 1uvjA.83.184 read from T0287.t06.many.frag # found chain 1uvjA in template set T0287 83 :KFKKVYRLL 1uvjA 185 :KFDDAYQLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26516 # 2bz1A.83.99 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 83 :KFKKVYRLL 2bz1A 100 :NKIRAYALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26517 # 2b6cA.83.123 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 83 :KFKKVYRLL 2b6cA 121 :ELPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26518 # 2audA.83.70 read from T0287.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0287)K83 (2audA)G72 because S (epsilon) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2audA 73 :HEARYKLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26519 # 1k55A.83.98 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 83 :KFKKVYRLL 1k55A 119 :VFQQIAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26520 # 1ae9A.83.7 read from T0287.t06.many.frag # found chain 1ae9A in template set T0287 83 :KFKKVYRLL 1ae9A 184 :EYLKIYQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26521 # 1ezwA.83.281 read from T0287.t06.many.frag # found chain 1ezwA in training set T0287 83 :KFKKVYRLL 1ezwA 282 :DFGTAIGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26522 # 1zj8A.83.152 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 83 :KFKKVYRLL 1zj8A 142 :NVPEIWRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26523 # 1aa7A.83.107 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 83 :KFKKVYRLL 1aa7A 108 :TFHGAKEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26524 # 2fbqA.83.126 read from T0287.t06.many.frag # found chain 2fbqA in template set T0287 83 :KFKKVYRLL 2fbqA 125 :HLRKYLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26525 # 1zybA.83.135 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 83 :KFKKVYRLL 1zybA 124 :IFRLNYMNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26526 # 1j93A.83.168 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 83 :KFKKVYRLL 1j93A 168 :NFTKIKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26527 # 1m2oA.84.544 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 84 :FKKVYRLLE 1m2oA 545 :GADVIRWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26528 # 1k8kG.84.90 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 84 :FKKVYRLLE 1k8kG 91 :IEKAVQSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26529 # 1hw1A.84.207 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 84 :FKKVYRLLE 1hw1A 208 :VYETVRRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26530 # 1h6gA.84.161 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 84 :FKKVYRLLE 1h6gA 538 :LDRTAGAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26531 # 2f6kA.84.136 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 84 :FKKVYRLLE 2f6kA 137 :LERVYQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26532 # 1pb7A.84.190 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 84 :FKKVYRLLE 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=26533 # 1sz9A.84.89 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 84 :FKKVYRLLE 1sz9A 90 :YKRTYLLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26534 # 2audA.84.71 read from T0287.t06.many.frag # found chain 2audA in template set T0287 84 :FKKVYRLLE 2audA 73 :HEARYKLFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26535 # 1rwhA.84.32 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 84 :FKKVYRLLE 1rwhA 33 :FAKAITALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26536 # 1sedA.84.69 read from T0287.t06.many.frag # found chain 1sedA in template set T0287 84 :FKKVYRLLE 1sedA 68 :FDKLLALFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26537 # 1e9rA.84.168 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 84 :FKKVYRLLE 1e9rA 239 :MRELFHWTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26538 # 1ib2A.84.158 read from T0287.t06.many.frag # found chain 1ib2A in template set T0287 84 :FKKVYRLLE 1ib2A 986 :LQFIIDAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26539 # 1k55A.84.99 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 84 :FKKVYRLLE 1k55A 120 :FQQIAREVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26540 # 1qmgA.84.297 read from T0287.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 1qmgA 369 :MLALYNSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26541 # 1u00A.84.192 read from T0287.t06.many.frag # found chain 1u00A in template set T0287 84 :FKKVYRLLE 1u00A 581 :IEQAIKNVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26542 # 1bc5A.84.50 read from T0287.t06.many.frag # found chain 1bc5A in template set T0287 84 :FKKVYRLLE 1bc5A 66 :FGRYLSMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26543 # 2bz1A.84.100 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 84 :FKKVYRLLE 2bz1A 101 :KIRAYALQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26544 # 1ezwA.84.282 read from T0287.t06.many.frag # found chain 1ezwA in training set T0287 84 :FKKVYRLLE 1ezwA 283 :FGTAIGLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26545 # 1bf5A.84.49 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 84 :FKKVYRLLE 1bf5A 199 :LKKMYLMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26546 # 1zhxA.84.335 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 84 :FKKVYRLLE 1zhxA 332 :IAKTKTELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26547 # 1zj8A.84.153 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 84 :FKKVYRLLE 1zj8A 143 :VPEIWRRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26548 # 2fkcA.84.145 read from T0287.t06.many.frag # found chain 2fkcA in template set T0287 84 :FKKVYRLLE 2fkcA 146 :QNIVLNWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26549 # 1owlA.84.272 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 84 :FKKVYRLLE 1owlA 273 :ARNSIRVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26550 # 2aeuA.84.258 read from T0287.t06.many.frag # found chain 2aeuA in template set T0287 84 :FKKVYRLLE 2aeuA 259 :IRKAFERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26551 # 1j93A.84.169 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 84 :FKKVYRLLE 1j93A 169 :FTKIKRLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26552 # 1jx4A.84.209 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 84 :FKKVYRLLE 1jx4A 210 :FDKLKGMIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26553 # 1aa7A.84.108 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 84 :FKKVYRLLE 1aa7A 109 :FHGAKEISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26554 # 1vykA.84.129 read from T0287.t06.many.frag # found chain 1vykA in template set T0287 84 :FKKVYRLLE 1vykA 130 :AEKYYGQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26555 # 1ae9A.84.8 read from T0287.t06.many.frag # found chain 1ae9A in template set T0287 84 :FKKVYRLLE 1ae9A 185 :YLKIYQAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26556 # 2b6cA.84.124 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)E92 (2b6cA)Y130 because P (beta_P) conformation "forbidden" or filtered. T0287 84 :FKKVYRLL 2b6cA 122 :LPTIFALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26557 # 1m2oA.85.545 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 85 :KKVYRLLES 1m2oA 546 :ADVIRWLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26558 # 1hw1A.85.208 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 85 :KKVYRLLES 1hw1A 209 :YETVRRYGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26559 # 1h6gA.85.162 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 85 :KKVYRLLES 1h6gA 539 :DRTAGAIRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26560 # 1k8kG.85.91 read from T0287.t06.many.frag # found chain 1k8kG in template set Warning: unaligning (T0287)E92 (1k8kG)D99 because P (beta_P) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1k8kG 92 :EKAVQSL T0287 93 :S 1k8kG 100 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=26562 # 1sz9A.85.90 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 85 :KKVYRLLES 1sz9A 91 :KRTYLLVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26563 # 2audA.85.72 read from T0287.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 2audA 74 :EARYKLF T0287 93 :S 2audA 82 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=26565 # 1pb7A.85.191 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 85 :KKVYRLLES 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26566 # 2f6kA.85.137 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 85 :KKVYRLLES 2f6kA 138 :ERVYQELDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26567 # 1bf5A.85.50 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 85 :KKVYRLLES 1bf5A 200 :KKMYLMLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26568 # 1qmgA.85.298 read from T0287.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 85 :KKVYRLL 1qmgA 370 :LALYNSL T0287 93 :S 1qmgA 378 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=26570 # 1e9rA.85.169 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 85 :KKVYRLLES 1e9rA 240 :RELFHWTTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26571 # 1jx4A.85.210 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 85 :KKVYRLLES 1jx4A 211 :DKLKGMIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26572 # 1rwhA.85.33 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 85 :KKVYRLLES 1rwhA 34 :AKAITALNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26573 # 2fkcA.85.146 read from T0287.t06.many.frag # found chain 2fkcA in template set T0287 85 :KKVYRLLES 2fkcA 147 :NIVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26574 # 2bz1A.85.101 read from T0287.t06.many.frag # found chain 2bz1A in template set T0287 85 :KKVYRLLES 2bz1A 102 :IRAYALQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26575 # 1zhxA.85.336 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 85 :KKVYRLLES 1zhxA 333 :AKTKTELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26576 # 2ccyA.85.82 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 85 :KKVYR 2ccyA 83 :LEGWK T0287 92 :ES 2ccyA 90 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26578 # 1vraB.85.64 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 85 :KKVYRLLES 1vraB 261 :ANFYKALQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26579 # 1zybA.85.137 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 85 :KKVYRLLES 1zybA 126 :RLNYMNIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26580 # 1zj8A.85.154 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 85 :KKVYRLLES 1zj8A 144 :PEIWRRLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26581 # 1k55A.85.100 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 85 :KKVYRLLES 1k55A 121 :QQIAREVGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26582 # 1usyA.85.147 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 85 :KKVYRLLES 1usyA 148 :EKVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26583 # 1owlA.85.273 read from T0287.t06.many.frag # found chain 1owlA in training set T0287 85 :KKVYRLLES 1owlA 274 :RNSIRVWQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26584 # 1w2xA.85.693 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 85 :KKVYRLLES 1w2xA 2169 :RQVATWIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26585 # 2erbA.85.73 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 85 :KKVYRLLES 2erbA 74 :EKLHDSLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26586 # 1jt6A.85.112 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 85 :KKVYRLLES 1jt6A 113 :NEKMNKLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26587 # 1j93A.85.170 read from T0287.t06.many.frag # found chain 1j93A in template set T0287 85 :KKVYRLLES 1j93A 170 :TKIKRLAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26588 # 2b6cA.85.125 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 85 :KKVYRLLES 2b6cA 123 :PTIFALFYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26589 # 1x6iA.85.43 read from T0287.t06.many.frag # found chain 1x6iA in training set T0287 85 :KKVYRLLES 1x6iA 41 :RIFIRLLEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26590 # 1aa7A.85.109 read from T0287.t06.many.frag # found chain 1aa7A in template set T0287 85 :KKVYRLLES 1aa7A 110 :HGAKEISLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26591 # 1m2oA.86.546 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 86 :KVYRLLESE 1m2oA 547 :DVIRWLDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26592 # 1hw1A.86.209 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 86 :KVYRLLESE 1hw1A 210 :ETVRRYGHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26593 # 1h6gA.86.163 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 86 :KVYRLLESE 1h6gA 540 :RTAGAIRGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26594 # 1k8kG.86.92 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 86 :KVYRLLESE 1k8kG 93 :KAVQSLDKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26595 # 1jx4A.86.211 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 86 :KVYRLLESE 1jx4A 212 :KLKGMIGEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26596 # 1qmgA.86.299 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 86 :KVYRLLESE 1qmgA 371 :ALYNSLSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26597 # 2fkcA.86.147 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 T0287 86 :KVYRLLES 2fkcA 148 :IVLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26598 # 1sz9A.86.91 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 86 :KVYRLLESE 1sz9A 92 :RTYLLVDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26599 # 1bf5A.86.51 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 86 :KVYRLLESE 1bf5A 201 :KMYLMLDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26600 # 1e9rA.86.170 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 86 :KVYRLLESE 1e9rA 241 :ELFHWTTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26601 # 1rwhA.86.34 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 86 :KVYRLLESE 1rwhA 35 :KAITALNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26602 # 1pb7A.86.192 read from T0287.t06.many.frag # found chain 1pb7A in training set T0287 86 :KVYRLLESE 1pb7A 193 :TMYRHMEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26603 # 2audA.86.73 read from T0287.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLL 2audA 75 :ARYKLF T0287 93 :SE 2audA 82 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26605 # 1vls.86.101 read from T0287.t06.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1vls 136 :ELIQFLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26606 # 2ccyA.86.83 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 86 :KVYR 2ccyA 84 :EGWK T0287 92 :ESE 2ccyA 90 :ATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26608 # 1w96A.86.529 read from T0287.t06.many.frag # found chain 1w96A in training set T0287 86 :KVYRLLESE 1w96A 542 :YLIKLLETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26609 # 1k55A.86.101 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 86 :KVYRLLESE 1k55A 122 :QIAREVGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26610 # 1w2xA.86.694 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 86 :KVYRLLESE 1w2xA 2170 :QVATWIEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26611 # 2erbA.86.74 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 86 :KVYRLLESE 2erbA 75 :KLHDSLPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26612 # 2f6kA.86.138 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 86 :KVYRLLESE 2f6kA 139 :RVYQELDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26613 # 1zj8A.86.155 read from T0287.t06.many.frag # found chain 1zj8A in template set T0287 86 :KVYRLLESE 1zj8A 145 :EIWRRLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26614 # 1z72A.86.85 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 86 :KVYRLLESE 1z72A 83 :KQLGFLEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26615 # 1jt6A.86.113 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 86 :KVYRLLESE 1jt6A 114 :EKMNKLENK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26616 # 1vraB.86.65 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 86 :KVYRLLESE 1vraB 262 :NFYKALQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26617 # 1zybA.86.138 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 86 :KVYRLLESE 1zybA 127 :LNYMNIVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26618 # 1k5nA.86.154 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 86 :KVYRLLESE 1k5nA 155 :QLRAYLEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26619 # 1sauA.86.88 read from T0287.t06.many.frag # found chain 1sauA in training set T0287 86 :KVYRLLESE 1sauA 89 :YIYKLFPQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26620 # 1zhxA.86.337 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 86 :KVYRLLESE 1zhxA 334 :KTKTELEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=26621 # 1usyA.86.148 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 86 :KVYRLLES 1usyA 149 :KVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26622 # 1ib2A.86.160 read from T0287.t06.many.frag # found chain 1ib2A in template set Warning: unaligning (T0287)E92 (1ib2A)K994 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1ib2A)G995 because T (delta_L) conformation "forbidden" or filtered. T0287 86 :KVYRLL 1ib2A 988 :FIIDAF T0287 94 :E 1ib2A 996 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=26624 # 1m2oA.87.547 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 87 :VYRLLESET 1m2oA 548 :VIRWLDRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26625 # 1hw1A.87.210 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 87 :VYRLLESET 1hw1A 211 :TVRRYGHES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26626 # 1jx4A.87.212 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 87 :VYRLLESET 1jx4A 213 :LKGMIGEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26627 # 2fkcA.87.148 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 87 :VYRLLES 2fkcA 149 :VLNWLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26628 # 1vls.87.102 read from T0287.t06.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1vls 137 :LIQFLDN T0287 95 :T 1vls 145 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=26630 # 1sz9A.87.92 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 87 :VYRLLESET 1sz9A 93 :TYLLVDNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26631 # 1qmgA.87.300 read from T0287.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLL 1qmgA 372 :LYNSL T0287 93 :SET 1qmgA 378 :EEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26633 # 1h6gA.87.164 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 87 :VYRLLESET 1h6gA 541 :TAGAIRGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26634 # 1bf5A.87.52 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 87 :VYRLLESET 1bf5A 202 :MYLMLDNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26635 # 1e9rA.87.171 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 87 :VYRLLESET 1e9rA 242 :LFHWTTIAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26636 # 1k5nA.87.155 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 87 :VYRLLESET 1k5nA 156 :LRAYLEGEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26637 # 1z72A.87.86 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 87 :VYRLLESET 1z72A 84 :QLGFLEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26638 # 1k8kG.87.93 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 87 :VYRLLESET 1k8kG 94 :AVQSLDKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26639 # 1w96A.87.530 read from T0287.t06.many.frag # found chain 1w96A in training set T0287 87 :VYRLLESET 1w96A 543 :LIKLLETED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26640 # 1dk8A.87.82 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 87 :VYRLLESET 1dk8A 193 :VSRQTKPAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26641 # 1rwhA.87.35 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 87 :VYRLLESET 1rwhA 36 :AITALNNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26642 # 2ccyA.87.84 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 87 :VYR 2ccyA 85 :GWK T0287 92 :ESET 2ccyA 90 :ATES Number of specific fragments extracted= 2 number of extra gaps= 1 total=26644 # 1usyA.87.149 read from T0287.t06.many.frag # found chain 1usyA in template set T0287 87 :VYRLLESET 1usyA 150 :VLNLIDTKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26645 # 2audA.87.74 read from T0287.t06.many.frag # found chain 2audA in template set Warning: unaligning (T0287)E92 (2audA)N81 because L (left) conformation "forbidden" or filtered. T0287 87 :VYRLL 2audA 76 :RYKLF T0287 93 :SET 2audA 82 :SPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26647 # 1jt6A.87.114 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 87 :VYRLLESET 1jt6A 115 :KMNKLENKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26648 # 1wwjA.87.64 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 87 :VYRLLESET 1wwjA 65 :LAKILPPPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26649 # 1k55A.87.102 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 87 :VYRLLESET 1k55A 123 :IAREVGEVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26650 # 1x6iA.87.45 read from T0287.t06.many.frag # found chain 1x6iA in training set Warning: unaligning (T0287)E94 (1x6iA)D50 because P (beta_P) conformation "forbidden" or filtered. T0287 87 :VYRLLES 1x6iA 43 :FIRLLEC T0287 95 :T 1x6iA 51 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26652 # 1w2xA.87.695 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 87 :VYRLLESET 1w2xA 2171 :VATWIEENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26653 # 2erbA.87.75 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 87 :VYRLLESET 2erbA 76 :LHDSLPSSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26654 # 1q92A.87.48 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 87 :VY 1q92A 80 :QY T0287 91 :LESET 1q92A 84 :LRPGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26656 # 1zybA.87.139 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 87 :VYRLLESET 1zybA 128 :NYMNIVSNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26657 # 1vraB.87.66 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 87 :VYRLLESET 1vraB 263 :FYKALQLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26658 # 1o82A.87.30 read from T0287.t06.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 87 :VYRLL 1o82A 31 :ILTAV T0287 93 :SET 1o82A 37 :SGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26660 # 1v9mA.87.71 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 87 :VYRL 1v9mA 72 :LPRL T0287 93 :SET 1v9mA 78 :GEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26662 # 1hw1A.88.211 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 88 :YRLLESETM 1hw1A 212 :VRRYGHESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26663 # 1m2oA.88.548 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 88 :YRLLESETM 1m2oA 549 :IRWLDRTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26664 # 1jx4A.88.213 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRLL 1jx4A 214 :KGMI T0287 93 :SETM 1jx4A 219 :EAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26666 # 2fkcA.88.149 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 88 :YRLLES 2fkcA 150 :LNWLEK T0287 96 :M 2fkcA 158 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26668 # 1k5nA.88.156 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 88 :YRLLESETM 1k5nA 157 :RAYLEGECV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26669 # 1h6gA.88.165 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 88 :YRLLESETM 1h6gA 542 :AGAIRGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26670 # 1vls.88.103 read from T0287.t06.many.frag # found chain 1vls in template set Warning: unaligning (T0287)E94 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0287 88 :YRLLES 1vls 138 :IQFLDN T0287 95 :TM 1vls 145 :NM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26672 # 1wwjA.88.65 read from T0287.t06.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1wwjA 66 :AKIL T0287 93 :SETM 1wwjA 71 :PPVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26674 # 1bf5A.88.53 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 88 :YRLLESETM 1bf5A 203 :YLMLDNKRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26675 # 1sz9A.88.93 read from T0287.t06.many.frag # found chain 1sz9A in template set Warning: unaligning (T0287)E92 (1sz9A)D98 because P (beta_P) conformation "forbidden" or filtered. T0287 88 :YRLL 1sz9A 94 :YLLV T0287 93 :SETM 1sz9A 99 :NTTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26677 # 1qmgA.88.301 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 88 :YRLLESETM 1qmgA 373 :YNSLSEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26678 # 1dk8A.88.83 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 88 :YRLLESETM 1dk8A 194 :SRQTKPATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26679 # 1z72A.88.87 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 88 :YRLLESETM 1z72A 85 :LGFLEADED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26680 # 2ccyA.88.85 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 88 :YR 2ccyA 86 :WK T0287 92 :ESETM 2ccyA 90 :ATEST Number of specific fragments extracted= 2 number of extra gaps= 1 total=26682 # 1usyA.88.150 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 88 :YRLLES 1usyA 151 :LNLIDT T0287 95 :TM 1usyA 158 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26684 # 1e9rA.88.172 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 88 :YRLLESETM 1e9rA 243 :FHWTTIATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26685 # 1rwhA.88.36 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 88 :YRLLESETM 1rwhA 37 :ITALNNKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26686 # 1jt6A.88.115 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 88 :YRLLESETM 1jt6A 116 :MNKLENKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26687 # 1zybA.88.140 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 88 :YRLLESETM 1zybA 129 :YMNIVSNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26688 # 1w96A.88.531 read from T0287.t06.many.frag # found chain 1w96A in training set T0287 88 :YRLLESETM 1w96A 544 :IKLLETEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26689 # 1v9mA.88.72 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 88 :YRL 1v9mA 73 :PRL T0287 94 :ETM 1v9mA 79 :EAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26691 # 1q92A.88.49 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 88 :Y 1q92A 81 :Y T0287 91 :LES 1q92A 84 :LRP T0287 95 :TM 1q92A 88 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26694 # 1vraB.88.67 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 88 :YRLLESETM 1vraB 264 :YKALQLACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26695 # 1w2xA.88.696 read from T0287.t06.many.frag # found chain 1w2xA in template set T0287 88 :YRLLESETM 1w2xA 2172 :ATWIEENYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26696 # 2erbA.88.76 read from T0287.t06.many.frag # found chain 2erbA in template set T0287 88 :YRLLESETM 2erbA 77 :HDSLPSSMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26697 # 1k8kG.88.94 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 88 :YRLLESETM 1k8kG 95 :VQSLDKNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26698 # 1k55A.88.103 read from T0287.t06.many.frag # found chain 1k55A in training set T0287 88 :YRLLESETM 1k55A 124 :AREVGEVRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26699 # 1m0kA.88.183 read from T0287.t06.many.frag # found chain 1m0kA in training set T0287 88 :YRLLESETM 1m0kA 171 :FKVLRNVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26700 # 1o82A.88.31 read from T0287.t06.many.frag # found chain 1o82A in training set T0287 88 :YRLLESETM 1o82A 32 :LTAVGSGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26701 # 1c9kA.88.107 read from T0287.t06.many.frag # found chain 1c9kA in template set T0287 88 :YRLLESETM 1c9kA 108 :ERAIDDEIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26702 # 1hw1A.89.212 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 89 :RLLESETME 1hw1A 213 :RRYGHESGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26703 # 1m2oA.89.549 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 89 :RLLESETME 1m2oA 550 :RWLDRTLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26704 # 1jx4A.89.214 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1jx4A 215 :GMI T0287 93 :SETME 1jx4A 219 :EAKAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26706 # 1k5nA.89.157 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 89 :RLLESETME 1k5nA 158 :AYLEGECVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26707 # 2fkcA.89.150 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 89 :RLLES 2fkcA 151 :NWLEK T0287 96 :ME 2fkcA 158 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26709 # 1wwjA.89.66 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 89 :RLLESETME 1wwjA 67 :KILPPPVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26710 # 1dk8A.89.84 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 89 :RLLESETME 1dk8A 195 :RQTKPATKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26711 # 1sz9A.89.94 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 89 :RLLESETME 1sz9A 95 :LLVDNTTRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26712 # 1h6gA.89.166 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 89 :RLLESETME 1h6gA 543 :GAIRGRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26713 # 1qmgA.89.302 read from T0287.t06.many.frag # found chain 1qmgA in training set Warning: unaligning (T0287)E92 (1qmgA)S377 because P (beta_P) conformation "forbidden" or filtered. T0287 89 :RLL 1qmgA 374 :NSL T0287 93 :SETME 1qmgA 378 :EEGKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26715 # 1z72A.89.88 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 89 :RLLESETME 1z72A 86 :GFLEADEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26716 # 2ccyA.89.86 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 89 :R 2ccyA 87 :K T0287 92 :ESETME 2ccyA 90 :ATESTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26718 # 1bf5A.89.54 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 89 :RLLESETME 1bf5A 204 :LMLDNKRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26719 # 1jt6A.89.116 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 89 :RLLESETME 1jt6A 117 :NKLENKYID Number of specific fragments extracted= 1 number of extra gaps= 0 total=26720 # 1v9mA.89.73 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. T0287 89 :RLL 1v9mA 74 :RLV T0287 93 :SETME 1v9mA 78 :GEARE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26722 # 1vls.89.104 read from T0287.t06.many.frag # found chain 1vls in template set T0287 89 :RLLESETME 1vls 139 :QFLDNGNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26723 # 1zybA.89.141 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 89 :RLLESETME 1zybA 130 :MNIVSNRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26724 # 1q92A.89.50 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)R89 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1q92A)R83 Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 T0287 91 :LESETME 1q92A 84 :LRPGLSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26725 # 1usyA.89.151 read from T0287.t06.many.frag # found chain 1usyA in template set Warning: unaligning (T0287)E94 (1usyA)K157 because L (left) conformation "forbidden" or filtered. T0287 89 :RLLES 1usyA 152 :NLIDT T0287 95 :TME 1usyA 158 :NLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26727 # 1e9rA.89.173 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 89 :RLLESETME 1e9rA 244 :HWTTIATFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26728 # 1uruA.89.99 read from T0287.t06.many.frag # found chain 1uruA in template set T0287 89 :RLLESETME 1uruA 100 :GASESLWAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26729 # 1k55A.89.104 read from T0287.t06.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1k55A 125 :REV T0287 93 :SETME 1k55A 129 :EVRMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26731 # 1vraB.89.68 read from T0287.t06.many.frag # found chain 1vraB in template set T0287 89 :RLLESETME 1vraB 265 :KALQLACED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26732 # 1o82A.89.32 read from T0287.t06.many.frag # found chain 1o82A in training set Warning: unaligning (T0287)E92 (1o82A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 89 :RLL 1o82A 33 :TAV T0287 93 :SETME 1o82A 37 :SGGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26734 # 1qwnA.89.138 read from T0287.t06.many.frag # found chain 1qwnA in training set T0287 89 :RLLESETME 1qwnA 139 :HDLGENKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26735 # 1rwhA.89.37 read from T0287.t06.many.frag # found chain 1rwhA in training set T0287 89 :RLLESETME 1rwhA 38 :TALNNKAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26736 # 1zs3A.89.148 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 89 :RLLESETME 1zs3A 149 :VELYGYNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26737 # 1k8kG.89.95 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 89 :RLLESETME 1k8kG 96 :QSLDKNGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26738 # 1zhxA.89.340 read from T0287.t06.many.frag # found chain 1zhxA in template set T0287 89 :RLLESETME 1zhxA 337 :TELEETQRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26739 # 1qc7A.89.43 read from T0287.t06.many.frag # found chain 1qc7A in template set T0287 89 :RLLESETME 1qc7A 278 :KNMSKRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26740 # 1hw1A.90.213 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 90 :LLESETMEL 1hw1A 214 :RYGHESGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26741 # 1k5nA.90.158 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 90 :LLESETMEL 1k5nA 159 :YLEGECVEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26742 # 1jx4A.90.215 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1jx4A 216 :MI T0287 93 :SETMEL 1jx4A 219 :EAKAKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26744 # 1dk8A.90.85 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 90 :LLESETMEL 1dk8A 196 :QTKPATKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26745 # 1wwjA.90.67 read from T0287.t06.many.frag # found chain 1wwjA in template set Warning: unaligning (T0287)E92 (1wwjA)P70 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1wwjA 68 :IL T0287 93 :SETMEL 1wwjA 71 :PPVRKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26747 # 1m2oA.90.550 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 90 :LLESETMEL 1m2oA 551 :WLDRTLIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26748 # 2fkcA.90.151 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 90 :LLES 2fkcA 152 :WLEK T0287 96 :MEL 2fkcA 158 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26750 # 1sz9A.90.95 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 90 :LLESETMEL 1sz9A 96 :LVDNTTRTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26751 # 1h6gA.90.167 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 90 :LLESETMEL 1h6gA 544 :AIRGRAARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26752 # 2czrA.90.11 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 90 :LLESETMEL 2czrA 4 :ELSPGTKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26753 # 1q92A.90.51 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1q92A)R83 Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 91 :LES 1q92A 84 :LRP T0287 95 :TMEL 1q92A 88 :LSEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26755 # 2ccyA.90.87 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L90 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2ccyA)L89 Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMEL 2ccyA 90 :ATESTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26756 # 1z72A.90.89 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 90 :LLESETMEL 1z72A 87 :FLEADEDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26757 # 1g61A.90.74 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 90 :LLESETMEL 1g61A 2075 :IVEDEELDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26758 # 1bf5A.90.55 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 90 :LLESETMEL 1bf5A 205 :MLDNKRKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26759 # 1qmgA.90.303 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 90 :LLESETMEL 1qmgA 375 :SLSEEGKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26760 # 1v9mA.90.74 read from T0287.t06.many.frag # found chain 1v9mA in template set T0287 90 :LLESETMEL 1v9mA 75 :LVTGEAREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26761 # 1zs3A.90.149 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 90 :LLESETMEL 1zs3A 150 :ELYGYNLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26762 # 1jt6A.90.117 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 90 :LLESETMEL 1jt6A 118 :KLENKYIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26763 # 1uruA.90.100 read from T0287.t06.many.frag # found chain 1uruA in template set T0287 90 :LLESETMEL 1uruA 101 :ASESLWADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26764 # 1kaeA.90.78 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)E92 (1kaeA)S81 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1kaeA 79 :RL T0287 93 :SETMEL 1kaeA 82 :DELKQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26766 # 1zybA.90.142 read from T0287.t06.many.frag # found chain 1zybA in template set T0287 90 :LLESETMEL 1zybA 131 :NIVSNRAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26767 # 1e9rA.90.174 read from T0287.t06.many.frag # found chain 1e9rA in template set Warning: unaligning (T0287)E94 (1e9rA)A249 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LLES 1e9rA 245 :WTTI T0287 95 :TMEL 1e9rA 250 :TFDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26769 # 1k8kG.90.96 read from T0287.t06.many.frag # found chain 1k8kG in template set T0287 90 :LLESETMEL 1k8kG 97 :SLDKNGVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26770 # 1k55A.90.105 read from T0287.t06.many.frag # found chain 1k55A in training set Warning: unaligning (T0287)E92 (1k55A)G128 because S (epsilon) conformation "forbidden" or filtered. T0287 90 :LL 1k55A 126 :EV T0287 93 :SETMEL 1k55A 129 :EVRMQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26772 # 1lc5A.90.271 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 90 :LLESETMEL 1lc5A 272 :WLREEGARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26773 # 1o82A.90.33 read from T0287.t06.many.frag # found chain 1o82A in training set T0287 90 :LLESETMEL 1o82A 34 :AVGSGGLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26774 # 1zz1A.90.74 read from T0287.t06.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)E92 (1zz1A)S77 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1zz1A 75 :AH T0287 93 :SETMEL 1zz1A 78 :AAHLEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26776 # 1q6uA.90.97 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 90 :LLESETMEL 1q6uA 98 :DNEAKGKEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26777 # 1fi4A.90.355 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)E92 (1fi4A)T338 because P (beta_P) conformation "forbidden" or filtered. T0287 90 :LL 1fi4A 336 :KF T0287 93 :SETMEL 1fi4A 339 :TEQLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26779 # 1hw1A.91.214 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 91 :LESETMELL 1hw1A 215 :YGHESGEIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26780 # 1k5nA.91.159 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 91 :LESETMELL 1k5nA 160 :LEGECVEWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26781 # 1jx4A.91.216 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 91 :LESETMELL 1jx4A 217 :IGEAKAKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26782 # 1dk8A.91.86 read from T0287.t06.many.frag # found chain 1dk8A in training set Warning: unaligning (T0287)E92 (1dk8A)K198 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1dk8A 197 :T T0287 93 :SETMELL 1dk8A 199 :PATKSFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26784 # 1wwjA.91.68 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 91 :LESETMELL 1wwjA 69 :LPPPVRKII Number of specific fragments extracted= 1 number of extra gaps= 0 total=26785 # 1q92A.91.52 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 91 :LESETMELL 1q92A 84 :LRPGLSEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26786 # 2czrA.91.12 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 91 :LESETMELL 2czrA 5 :LSPGTKKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26787 # 2fkcA.91.152 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 91 :LES 2fkcA 153 :LEK T0287 96 :MELL 2fkcA 158 :VLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26789 # 1m2oA.91.551 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 91 :LESETMELL 1m2oA 552 :LDRTLIKLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26790 # 1sz9A.91.96 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 91 :LESETMELL 1sz9A 97 :VDNTTRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26791 # 1h6gA.91.168 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 91 :LESETMELL 1h6gA 545 :IRGRAARVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26792 # 2ccyA.91.88 read from T0287.t06.many.frag # found chain 2ccyA in training set Warning: unaligning (T0287)L91 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2ccyA)L89 T0287 92 :ESETMELL 2ccyA 90 :ATESTKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26793 # 1g61A.91.75 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2076 :VEDEELDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26794 # 1zz1A.91.75 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 91 :LESETMELL 1zz1A 76 :HSAAHLENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26795 # 1z72A.91.90 read from T0287.t06.many.frag # found chain 1z72A in template set T0287 91 :LESETMELL 1z72A 88 :LEADEDGYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26796 # 1fi4A.91.356 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)E92 (1fi4A)T338 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1fi4A 337 :F T0287 93 :SETMELL 1fi4A 339 :TEQLEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26798 # 1lc5A.91.272 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 91 :LESETMELL 1lc5A 273 :LREEGARFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26799 # 1oohA.91.78 read from T0287.t06.many.frag # found chain 1oohA in training set T0287 91 :LESETMELL 1oohA 77 :VPPEMMEMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26800 # 1zs3A.91.150 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 91 :LESETMELL 1zs3A 151 :LYGYNLQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26801 # 1v9mA.91.75 read from T0287.t06.many.frag # found chain 1v9mA in template set Warning: unaligning (T0287)L91 (1v9mA)V76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E92 (1v9mA)T77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S93 (1v9mA)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 94 :ETMELL 1v9mA 79 :EAREAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26802 # 1jt6A.91.118 read from T0287.t06.many.frag # found chain 1jt6A in template set T0287 91 :LESETMELL 1jt6A 119 :LENKYIDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26803 # 1kaeA.91.79 read from T0287.t06.many.frag # found chain 1kaeA in training set T0287 91 :LESETMELL 1kaeA 80 :LSDELKQAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26804 # 1l5aA.91.214 read from T0287.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)E92 (1l5aA)N216 because P (beta_P) conformation "forbidden" or filtered. T0287 91 :L 1l5aA 215 :L T0287 93 :SETMELL 1l5aA 217 :SQLNHLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26806 # 1qmgA.91.304 read from T0287.t06.many.frag # found chain 1qmgA in training set T0287 91 :LESETMELL 1qmgA 376 :LSEEGKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26807 # 1uruA.91.101 read from T0287.t06.many.frag # found chain 1uruA in template set T0287 91 :LESETMELL 1uruA 102 :SESLWADFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26808 # 1ekqA.91.145 read from T0287.t06.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELL 1ekqA 148 :GDIIRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26809 # 1fobA.91.109 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 91 :LESETMELL 1fobA 110 :LYNYTLEVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26810 # 1bf5A.91.56 read from T0287.t06.many.frag # found chain 1bf5A in template set T0287 91 :LESETMELL 1bf5A 206 :LDNKRKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26811 # 1g61A.91.166 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 91 :LESETMELL 1g61A 2167 :VEDDELEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26812 # 1za0A.91.206 read from T0287.t06.many.frag # found chain 1za0A in template set Warning: unaligning (T0287)L91 because of BadResidue code BAD_PEPTIDE in next template residue (1za0A)R208 Warning: unaligning (T0287)E92 because of BadResidue code BAD_PEPTIDE at template residue (1za0A)R208 T0287 93 :SETMELL 1za0A 209 :DETIAAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26813 # 1hw1A.92.215 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 92 :ESETMELLH 1hw1A 216 :GHESGEIWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26814 # 1k5nA.92.160 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 92 :ESETMELLH 1k5nA 161 :EGECVEWLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26815 # 1jx4A.92.217 read from T0287.t06.many.frag # found chain 1jx4A in training set Warning: unaligning (T0287)E92 (1jx4A)G218 because S (epsilon) conformation "forbidden" or filtered. T0287 93 :SETMELLH 1jx4A 219 :EAKAKYLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26816 # 1q92A.92.53 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 92 :ESETMELLH 1q92A 85 :RPGLSEKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26817 # 1wwjA.92.69 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 92 :ESETMELLH 1wwjA 70 :PPPVRKIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26818 # 1dk8A.92.87 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 92 :ESETMELLH 1dk8A 198 :KPATKSFIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26819 # 2czrA.92.13 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 92 :ESETMELLH 2czrA 6 :SPGTKKVYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26820 # 2fkcA.92.153 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 92 :ES 2fkcA 154 :EK T0287 96 :MELLH 2fkcA 158 :VLVLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26822 # 1zz1A.92.76 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 92 :ESETMELLH 1zz1A 77 :SAAHLENMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26823 # 1h6gA.92.169 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 92 :ESETMELLH 1h6gA 546 :RGRAARVIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26824 # 1m2oA.92.552 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 92 :ESETMELLH 1m2oA 553 :DRTLIKLCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26825 # 2ccyA.92.89 read from T0287.t06.many.frag # found chain 2ccyA in training set T0287 92 :ESETMELLH 2ccyA 90 :ATESTKLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26826 # 1fi4A.92.357 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 92 :ESETMELLH 1fi4A 338 :TTEQLEAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26827 # 1g61A.92.76 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 92 :ESETMELLH 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26828 # 1y1pA.92.107 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 92 :ESETMELLH 1y1pA 109 :IGGTLNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26829 # 1sz9A.92.97 read from T0287.t06.many.frag # found chain 1sz9A in template set T0287 92 :ESETMELLH 1sz9A 98 :DNTTRTKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26830 # 1zs3A.92.151 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 92 :ESETMELLH 1zs3A 152 :YGYNLQVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26831 # 1lc5A.92.273 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 92 :ESETMELLH 1lc5A 274 :REEGARFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26832 # 1uhvA.92.31 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 92 :ESETMELLH 1uhvA 32 :QKEYIETLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26833 # 1l5aA.92.215 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 92 :ESETMELLH 1l5aA 216 :NSQLNHLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26834 # 1a4iA.92.77 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 92 :ESETMELLH 1a4iA 78 :ESEVMKYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26835 # 1fobA.92.110 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 92 :ESETMELLH 1fobA 111 :YNYTLEVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26836 # 1e9rA.92.176 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 92 :ESETMELLH 1e9rA 247 :TIATFDDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26837 # 1ekqA.92.146 read from T0287.t06.many.frag # found chain 1ekqA in training set Warning: unaligning (T0287)E92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0287 93 :SETMELLH 1ekqA 148 :GDIIRLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26838 # 1oohA.92.79 read from T0287.t06.many.frag # found chain 1oohA in training set T0287 92 :ESETMELLH 1oohA 78 :PPEMMEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26839 # 1q6uA.92.99 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 92 :ESETMELLH 1q6uA 100 :EAKGKEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26840 # 3nul.92.41 read from T0287.t06.many.frag # found chain 3nul in training set T0287 92 :ESETMELLH 3nul 43 :KPQEIDGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26841 # 1qtwA.92.44 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 92 :ESETMELLH 1qtwA 45 :TTQTIDEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26842 # 1jftA.92.27 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 92 :ESETMELLH 1jftA 29 :AEETRNAVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26843 # 1gsoA.92.305 read from T0287.t06.many.frag # found chain 1gsoA in training set T0287 92 :ESETMELLH 1gsoA 304 :KSDLVELCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26844 # 1hw1A.93.216 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 93 :SETMELLHA 1hw1A 217 :HESGEIWHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26845 # 1k5nA.93.161 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 93 :SETMELLHA 1k5nA 162 :GECVEWLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26846 # 1jx4A.93.218 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 93 :SETMELLHA 1jx4A 219 :EAKAKYLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26847 # 1q92A.93.54 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)E94 (1q92A)G87 because T (delta_L) conformation "forbidden" or filtered. T0287 93 :S 1q92A 86 :P T0287 95 :TMELLHA 1q92A 88 :LSEKAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26849 # 2fkcA.93.154 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 93 :S 2fkcA 155 :K T0287 96 :MELLHA 2fkcA 158 :VLVLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26851 # 2czrA.93.14 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 93 :SETMELLHA 2czrA 7 :PGTKKVYTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26852 # 1y1pA.93.108 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 93 :SETMELLHA 1y1pA 110 :GGTLNALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26853 # 1e9rA.93.177 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 93 :SETMELLHA 1e9rA 248 :IATFDDLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26854 # 1fi4A.93.358 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 93 :SETMELLHA 1fi4A 339 :TEQLEAFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26855 # 1zz1A.93.77 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 93 :SETMELLHA 1zz1A 78 :AAHLENMKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26856 # 1h6gA.93.170 read from T0287.t06.many.frag # found chain 1h6gA in template set Warning: unaligning (T0287)H100 (1h6gA)H554 because H (helix) conformation "forbidden" or filtered. T0287 93 :SETMELL 1h6gA 547 :GRAARVI T0287 101 :A 1h6gA 555 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26858 # 1wwjA.93.70 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 93 :SETMELLHA 1wwjA 71 :PPVRKIIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26859 # 1dk8A.93.88 read from T0287.t06.many.frag # found chain 1dk8A in training set T0287 93 :SETMELLHA 1dk8A 199 :PATKSFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26860 # 2ccyA.93.90 read from T0287.t06.many.frag # found chain 2ccyA in training set T0287 93 :SETMELLHA 2ccyA 91 :TESTKLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26861 # 1lc5A.93.274 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 93 :SETMELLHA 1lc5A 275 :EEGARFYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26862 # 1m2oA.93.553 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 93 :SETMELLHA 1m2oA 554 :RTLIKLCQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26863 # 1zs3A.93.152 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 93 :SETMELLHA 1zs3A 153 :GYNLQVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26864 # 1g61A.93.77 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 93 :SETMELLHA 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26865 # 1uhvA.93.32 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 93 :SETMELLHA 1uhvA 33 :KEYIETLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26866 # 1g8mA.93.126 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 93 :SETMELLHA 1g8mA 127 :IGGVALLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26867 # 1uq5A.93.204 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 93 :SETMELLHA 1uq5A 209 :NSWGRLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26868 # 1qtwA.93.45 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 93 :SETMELLHA 1qtwA 46 :TQTIDEFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26869 # 1a4iA.93.78 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 93 :SETMELLHA 1a4iA 79 :SEVMKYITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26870 # 1jftA.93.28 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 93 :SETMELLHA 1jftA 30 :EETRNAVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26871 # 1l5aA.93.216 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 93 :SETMELLHA 1l5aA 217 :SQLNHLLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26872 # 1fobA.93.111 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 93 :SETMELLHA 1fobA 112 :NYTLEVCNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26873 # 1q6uA.93.100 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 93 :SETMELLHA 1q6uA 101 :AKGKEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26874 # 1oohA.93.80 read from T0287.t06.many.frag # found chain 1oohA in training set T0287 93 :SETMELLHA 1oohA 79 :PEMMEMSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26875 # 1wgzA.93.189 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 93 :SETMELLHA 1wgzA 190 :EGLKGLLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26876 # 1lycA.93.95 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 93 :SETMELLHA 1lycA 96 :TDTVEALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26877 # 1hw1A.94.217 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 94 :ETMELLHAI 1hw1A 218 :ESGEIWHRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26878 # 1k5nA.94.162 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 94 :ETMELLHAI 1k5nA 163 :ECVEWLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26879 # 1q92A.94.55 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 94 :ETMELLHAI 1q92A 87 :GLSEKAISI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26880 # 1y1pA.94.109 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 94 :ETMELLHAI 1y1pA 111 :GTLNALRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26881 # 1jx4A.94.219 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 94 :ETMELLHAI 1jx4A 220 :AKAKYLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26882 # 1zz1A.94.78 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 94 :ETMELLHAI 1zz1A 79 :AHLENMKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26883 # 2fkcA.94.155 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)E94 because of BadResidue code BAD_PEPTIDE in next template residue (2fkcA)R157 Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAI 2fkcA 158 :VLVLTDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26884 # 2czrA.94.15 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 94 :ETMELLHAI 2czrA 8 :GTKKVYTQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26885 # 1uhvA.94.33 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 94 :ETMELLHAI 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26886 # 1h6gA.94.171 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 94 :ETMELLHAI 1h6gA 548 :RAARVIHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26887 # 1fi4A.94.359 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 94 :ETMELLHAI 1fi4A 340 :EQLEAFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26888 # 1g8mA.94.127 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 94 :ETMELLHAI 1g8mA 128 :GGVALLRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26889 # 1e9rA.94.178 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 94 :ETMELLHAI 1e9rA 249 :ATFDDLRGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26890 # 1zs3A.94.153 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 94 :ETMELLHAI 1zs3A 154 :YNLQVIRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26891 # 1lc5A.94.275 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 94 :ETMELLHAI 1lc5A 276 :EGARFYQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26892 # 1wwjA.94.71 read from T0287.t06.many.frag # found chain 1wwjA in template set T0287 94 :ETMELLHAI 1wwjA 72 :PVRKIIGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26893 # 1qtwA.94.46 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 94 :ETMELLHAI 1qtwA 47 :QTIDEFKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26894 # 1uq5A.94.205 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 94 :ETMELLHAI 1uq5A 210 :SWGRLSTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26895 # 1lniA.94.13 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 94 :ETMELLHAI 1lniA 14 :EATDTLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26896 # 1lycA.94.96 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 94 :ETMELLHAI 1lycA 97 :DTVEALRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26897 # 1fobA.94.112 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 94 :ETMELLHAI 1fobA 113 :YTLEVCNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26898 # 1q6uA.94.101 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 94 :ETMELLHAI 1q6uA 102 :KGKEYREKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26899 # 1g61A.94.78 read from T0287.t06.many.frag # found chain 1g61A in training set T0287 94 :ETMELLHAI 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26900 # 1a4iA.94.79 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 94 :ETMELLHAI 1a4iA 80 :EVMKYITSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26901 # 1m2oA.94.554 read from T0287.t06.many.frag # found chain 1m2oA in template set T0287 94 :ETMELLHAI 1m2oA 555 :TLIKLCQKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26902 # 1wgzA.94.190 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 94 :ETMELLHAI 1wgzA 191 :GLKGLLDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26903 # 1jftA.94.29 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 94 :ETMELLHAI 1jftA 31 :ETRNAVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26904 # 1l5aA.94.217 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 94 :ETMELLHAI 1l5aA 218 :QLNHLLLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26905 # 1vpbA.94.139 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 94 :ETMELLHAI 1vpbA 128 :DKIEMAKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26906 # 2ccyA.94.91 read from T0287.t06.many.frag # found chain 2ccyA in training set T0287 94 :ETMELLHAI 2ccyA 92 :ESTKLAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26907 # 1hw1A.95.218 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 95 :TMELLHAIA 1hw1A 219 :SGEIWHRMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26908 # 1k5nA.95.163 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 95 :TMELLHAIA 1k5nA 164 :CVEWLRRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26909 # 1y1pA.95.110 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 95 :TMELLHAIA 1y1pA 112 :TLNALRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26910 # 1q92A.95.56 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 95 :TMELLHAIA 1q92A 88 :LSEKAISIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26911 # 1g8mA.95.128 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 95 :TMELLHAIA 1g8mA 129 :GVALLRAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26912 # 1uq5A.95.206 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 95 :TMELLHAIA 1uq5A 211 :WGRLSTAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26913 # 1h6gA.95.172 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 95 :TMELLHAIA 1h6gA 549 :AARVIHVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26914 # 1zs3A.95.154 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 95 :TMELLHAIA 1zs3A 155 :NLQVIRNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26915 # 2fkcA.95.156 read from T0287.t06.many.frag # found chain 2fkcA in template set Warning: unaligning (T0287)T95 because of BadResidue code BAD_PEPTIDE at template residue (2fkcA)R157 T0287 96 :MELLHAIA 2fkcA 158 :VLVLTDIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26916 # 1uhvA.95.34 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 95 :TMELLHAIA 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26917 # 1lc5A.95.276 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 95 :TMELLHAIA 1lc5A 277 :GARFYQALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26918 # 1zz1A.95.79 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 95 :TMELLHAIA 1zz1A 80 :HLENMKRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26919 # 1fi4A.95.360 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 95 :TMELLHAIA 1fi4A 341 :QLEAFNHQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26920 # 2czrA.95.16 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 95 :TMELLHAIA 2czrA 9 :TKKVYTQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26921 # 1lniA.95.14 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 95 :TMELLHAIA 1lniA 15 :ATDTLNLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26922 # 1jx4A.95.220 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 95 :TMELLHAIA 1jx4A 221 :KAKYLISLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26923 # 1q6uA.95.102 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 95 :TMELLHAIA 1q6uA 103 :GKEYREKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26924 # 1qtwA.95.47 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 95 :TMELLHAIA 1qtwA 48 :TIDEFKAAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26925 # 1q79A.95.397 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 95 :TMELLHAIA 1q79A 398 :IRILVGSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26926 # 1vpbA.95.140 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 95 :TMELLHAIA 1vpbA 129 :KIEMAKAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26927 # 1wgzA.95.191 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 95 :TMELLHAIA 1wgzA 192 :LKGLLDRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26928 # 1lycA.95.97 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 95 :TMELLHAIA 1lycA 98 :TVEALRAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26929 # 1fobA.95.113 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 95 :TMELLHAIA 1fobA 114 :TLEVCNTFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26930 # 1wa5C.95.311 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 95 :TMELLHAIA 1wa5C 312 :SLSFLTAVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26931 # 1jftA.95.30 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 95 :TMELLHAIA 1jftA 32 :TRNAVWAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26932 # 1gxqA.95.35 read from T0287.t06.many.frag # found chain 1gxqA in template set T0287 95 :TMELLHAIA 1gxqA 159 :EFKLLHFFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26933 # 1e9rA.95.179 read from T0287.t06.many.frag # found chain 1e9rA in template set T0287 95 :TMELLHAIA 1e9rA 250 :TFDDLRGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26934 # 3nul.95.44 read from T0287.t06.many.frag # found chain 3nul in training set T0287 95 :TMELLHAIA 3nul 46 :EIDGIKKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26935 # 1m2oA.95.555 read from T0287.t06.many.frag # found chain 1m2oA in template set Warning: unaligning (T0287)A103 (1m2oA)A564 because P (beta_P) conformation "forbidden" or filtered. T0287 95 :TMELLHAI 1m2oA 556 :LIKLCQKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=26936 # 1a4iA.95.80 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 95 :TMELLHAIA 1a4iA 81 :VMKYITSLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26937 # 1y1pA.96.111 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 96 :MELLHAIAE 1y1pA 113 :LNALRAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26938 # 1hw1A.96.219 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. T0287 96 :MELL 1hw1A 220 :GEIW T0287 101 :AIAE 1hw1A 225 :RMQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26940 # 1k5nA.96.164 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 96 :MELLHAIAE 1k5nA 165 :VEWLRRYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26941 # 1q92A.96.57 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 96 :MELLHAIAE 1q92A 89 :SEKAISIWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26942 # 1g8mA.96.129 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 96 :MELLHAIAE 1g8mA 130 :VALLRAAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26943 # 1zz1A.96.80 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 96 :MELLHAIAE 1zz1A 81 :LENMKRVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26944 # 1uhvA.96.35 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 96 :MELLHAIAE 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26945 # 1zs3A.96.155 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 96 :MELLHAIAE 1zs3A 156 :LQVIRNLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26946 # 1uq5A.96.207 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 96 :MELLHAIAE 1uq5A 212 :GRLSTAIQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26947 # 1lc5A.96.277 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 96 :MELLHAIAE 1lc5A 278 :ARFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26948 # 1fi4A.96.361 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 96 :MELLHAIAE 1fi4A 342 :LEAFNHQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26949 # 1q6uA.96.103 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 96 :MELLHAIAE 1q6uA 104 :KEYREKFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26950 # 1qtwA.96.48 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 96 :MELLHAIAE 1qtwA 49 :IDEFKAACE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26951 # 1wa5C.96.312 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 96 :MELLHAIAE 1wa5C 313 :LSFLTAVTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26952 # 2fkcA.96.157 read from T0287.t06.many.frag # found chain 2fkcA in template set T0287 96 :MELLHAIAE 2fkcA 158 :VLVLTDILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26953 # 3nul.96.45 read from T0287.t06.many.frag # found chain 3nul in training set T0287 96 :MELLHAIAE 3nul 47 :IDGIKKDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26954 # 1h6gA.96.173 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 96 :MELLHAIAE 1h6gA 550 :ARVIHVVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26955 # 1lycA.96.98 read from T0287.t06.many.frag # found chain 1lycA in training set T0287 96 :MELLHAIAE 1lycA 99 :VEALRAVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26956 # 1q79A.96.398 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 96 :MELLHAIAE 1q79A 399 :RILVGSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26957 # 1jx4A.96.221 read from T0287.t06.many.frag # found chain 1jx4A in training set T0287 96 :MELLHAIAE 1jx4A 222 :AKYLISLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26958 # 1vpbA.96.141 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 96 :MELLHAIAE 1vpbA 130 :IEMAKAVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26959 # 1lniA.96.15 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 96 :MELLHAIAE 1lniA 16 :TDTLNLIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26960 # 1jftA.96.31 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 96 :MELLHAIAE 1jftA 33 :RNAVWAAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26961 # 1zl0A.96.68 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 96 :MELLHAIAE 1zl0A 67 :LEDLHNAFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26962 # 1gxqA.96.36 read from T0287.t06.many.frag # found chain 1gxqA in template set T0287 96 :MELLHAIAE 1gxqA 160 :FKLLHFFMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26963 # 2czrA.96.17 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 96 :MELLHAIAE 2czrA 10 :KKVYTQVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26964 # 1a4iA.96.81 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 96 :MELLHAIAE 1a4iA 82 :MKYITSLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26965 # 2bptA.96.681 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 96 :MELLHAIAE 2bptA 682 :MNVLAQMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26966 # 1wgzA.96.192 read from T0287.t06.many.frag # found chain 1wgzA in template set T0287 96 :MELLHAIAE 1wgzA 193 :KGLLDRILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26967 # 1fobA.96.114 read from T0287.t06.many.frag # found chain 1fobA in training set T0287 96 :MELLHAIAE 1fobA 115 :LEVCNTFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26968 # 1y1pA.97.112 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 97 :ELLHAIAEN 1y1pA 114 :NALRAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26969 # 1q92A.97.58 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 97 :ELLHAIAEN 1q92A 90 :EKAISIWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26970 # 1k5nA.97.165 read from T0287.t06.many.frag # found chain 1k5nA in training set T0287 97 :ELLHAIAEN 1k5nA 166 :EWLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26971 # 1hw1A.97.220 read from T0287.t06.many.frag # found chain 1hw1A in training set T0287 97 :ELLHAIAEN 1hw1A 221 :EIWHRMQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26972 # 1uhvA.97.36 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 97 :ELLHAIAEN 1uhvA 37 :ETLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26973 # 1lc5A.97.278 read from T0287.t06.many.frag # found chain 1lc5A in training set Warning: unaligning (T0287)N105 (1lc5A)L287 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1lc5A 279 :RFYQALCQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=26974 # 1zz1A.97.81 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 97 :ELLHAIAEN 1zz1A 82 :ENMKRVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26975 # 1q79A.97.399 read from T0287.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N105 (1q79A)N408 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1q79A 400 :ILVGSLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26976 # 1g8mA.97.130 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 97 :ELLHAIAEN 1g8mA 131 :ALLRAAAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26977 # 1uq5A.97.208 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 97 :ELLHAIAEN 1uq5A 213 :RLSTAIQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26978 # 1zs3A.97.156 read from T0287.t06.many.frag # found chain 1zs3A in template set T0287 97 :ELLHAIAEN 1zs3A 157 :QVIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26979 # 2czrA.97.18 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 97 :ELLHAIAEN 2czrA 11 :KVYTQVRYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26980 # 1wa5C.97.313 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 97 :ELLHAIAEN 1wa5C 314 :SFLTAVTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26981 # 1q6uA.97.104 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 97 :ELLHAIAEN 1q6uA 105 :EYREKFAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26982 # 1n5uA.97.258 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 97 :ELLHAIAEN 1n5uA 259 :DLAKYICEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26983 # 1lniA.97.16 read from T0287.t06.many.frag # found chain 1lniA in training set T0287 97 :ELLHAIAEN 1lniA 17 :DTLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26984 # 3nul.97.46 read from T0287.t06.many.frag # found chain 3nul in training set T0287 97 :ELLHAIAEN 3nul 48 :DGIKKDFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26985 # 1zl0A.97.69 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 97 :ELLHAIAEN 1zl0A 68 :EDLHNAFDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26986 # 1h6gA.97.174 read from T0287.t06.many.frag # found chain 1h6gA in template set T0287 97 :ELLHAIAEN 1h6gA 551 :RVIHVVTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26987 # 1fi4A.97.362 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 97 :ELLHAIAEN 1fi4A 343 :EAFNHQFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26988 # 1g5aA.97.80 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 97 :ELLHAIAEN 1g5aA 81 :DIDIARENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26989 # 1gxqA.97.37 read from T0287.t06.many.frag # found chain 1gxqA in template set T0287 97 :ELLHAIAEN 1gxqA 161 :KLLHFFMTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26990 # 1vpbA.97.142 read from T0287.t06.many.frag # found chain 1vpbA in training set T0287 97 :ELLHAIAEN 1vpbA 131 :EMAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26991 # 1qtwA.97.49 read from T0287.t06.many.frag # found chain 1qtwA in training set T0287 97 :ELLHAIAEN 1qtwA 50 :DEFKAACEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26992 # 1w79A.97.6 read from T0287.t06.many.frag # found chain 1w79A in template set Warning: unaligning (T0287)N105 (1w79A)D15 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1w79A 7 :EDIDAILE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26993 # 1a4iA.97.82 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 97 :ELLHAIAEN 1a4iA 83 :KYITSLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=26994 # 1t1vA.97.47 read from T0287.t06.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)N105 (1t1vA)N56 because D (zeta) conformation "forbidden" or filtered. T0287 97 :ELLHAIAE 1t1vA 48 :DEMRTLAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26995 # 1kpsB.97.140 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 97 :ELLHAIAEN 1kpsB 559 :PLLLAFVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26996 # 1jftA.97.32 read from T0287.t06.many.frag # found chain 1jftA in template set T0287 97 :ELLHAIAEN 1jftA 34 :NAVWAAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26997 # 1colA.97.60 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 97 :ELL 1colA 61 :ASL T0287 102 :IAE 1colA 66 :ITA Number of specific fragments extracted= 2 number of extra gaps= 2 total=26999 # 1y1pA.98.113 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 98 :LLHAIAENP 1y1pA 115 :ALRAAAATP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27000 # 1q92A.98.59 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 98 :LLHAIAENP 1q92A 91 :KAISIWESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27001 # 1n5uA.98.259 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 98 :LLHAIAENP 1n5uA 260 :LAKYICENQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27002 # 1k5nA.98.166 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1k5nA 167 :WLRRYLEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27003 # 1uhvA.98.37 read from T0287.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1uhvA 38 :TLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27004 # 1zz1A.98.82 read from T0287.t06.many.frag # found chain 1zz1A in template set T0287 98 :LLHAIAENP 1zz1A 83 :NMKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27005 # 3nul.98.47 read from T0287.t06.many.frag # found chain 3nul in training set T0287 98 :LLHAIAENP 3nul 49 :GIKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27006 # 1g5aA.98.81 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 98 :LLHAIAENP 1g5aA 82 :IDIARENNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27007 # 1lc5A.98.279 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 98 :LLHAIAENP 1lc5A 280 :FYQALCQLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27008 # 1t1vA.98.48 read from T0287.t06.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 98 :LLHAIA 1t1vA 49 :EMRTLA T0287 105 :NP 1t1vA 56 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27010 # 1kpsB.98.141 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 98 :LLHAIAENP 1kpsB 560 :LLLAFVTKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27011 # 1colA.98.61 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 98 :LL 1colA 62 :SL T0287 102 :IAENP 1colA 66 :ITANP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27013 # 1q79A.98.400 read from T0287.t06.many.frag # found chain 1q79A in template set Warning: unaligning (T0287)N105 (1q79A)N408 because P (beta_P) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1q79A 401 :LVGSLEK T0287 106 :P 1q79A 409 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=27015 # 1g8mA.98.131 read from T0287.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)N105 (1g8mA)N139 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAE 1g8mA 132 :LLRAAAK T0287 106 :P 1g8mA 140 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=27017 # 1hw1A.98.221 read from T0287.t06.many.frag # found chain 1hw1A in training set Warning: unaligning (T0287)H100 (1hw1A)H224 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 because last residue in template chain is (1hw1A)L230 T0287 98 :LL 1hw1A 222 :IW T0287 101 :AIAEN 1hw1A 225 :RMQKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27019 # 1a4iA.98.83 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 98 :LLHAIAENP 1a4iA 84 :YITSLNEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27020 # 1wa5C.98.314 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 98 :LLHAIAENP 1wa5C 315 :FLTAVTRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27021 # 1f74A.98.149 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 98 :LLHAIAENP 1f74A 150 :QFGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27022 # 1q6uA.98.105 read from T0287.t06.many.frag # found chain 1q6uA in template set T0287 98 :LLHAIAENP 1q6uA 106 :YREKFAKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27023 # 1zs3A.98.157 read from T0287.t06.many.frag # found chain 1zs3A in template set Warning: unaligning (T0287)P106 (1zs3A)L166 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1zs3A 158 :VIRNLAGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27024 # 1lniA.98.17 read from T0287.t06.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 T0287 98 :LLHAIAEN 1lniA 18 :TLNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27025 # 1uq5A.98.209 read from T0287.t06.many.frag # found chain 1uq5A in training set T0287 98 :LLHAIAENP 1uq5A 214 :LSTAIQESN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27026 # 1zl0A.98.70 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 98 :LLHAIAENP 1zl0A 69 :DLHNAFDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27027 # 1fi4A.98.363 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 98 :LLHAIAENP 1fi4A 344 :AFNHQFESS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27028 # 1w79A.98.7 read from T0287.t06.many.frag # found chain 1w79A in template set T0287 98 :LLHAIAENP 1w79A 8 :DIDAILEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27029 # 2czrA.98.19 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 98 :LLHAIAENP 2czrA 12 :VYTQVRYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27030 # 1h80A.98.44 read from T0287.t06.many.frag # found chain 1h80A in training set T0287 98 :LLHAIAENP 1h80A 72 :AINAISRKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27031 # 1gxqA.98.38 read from T0287.t06.many.frag # found chain 1gxqA in template set T0287 98 :LLHAIAENP 1gxqA 162 :LLHFFMTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27032 # 1no7A.98.162 read from T0287.t06.many.frag # found chain 1no7A in template set T0287 98 :LLHAIAENP 1no7A 613 :AVRGAFDDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27033 # 1vpbA.98.143 read from T0287.t06.many.frag # found chain 1vpbA in training set Warning: unaligning (T0287)P106 (1vpbA)A140 because G (3-10) conformation "forbidden" or filtered. T0287 98 :LLHAIAEN 1vpbA 132 :MAKAVAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27034 # 1q92A.99.60 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 99 :LHAIAENPN 1q92A 92 :AISIWESKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27035 # 1y1pA.99.114 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 99 :LHAIAENPN 1y1pA 116 :LRAAAATPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27036 # 1n5uA.99.260 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 99 :LHAIAENPN 1n5uA 261 :AKYICENQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27037 # 1g5aA.99.82 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 99 :LHAIAENPN 1g5aA 83 :DIARENNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27038 # 3nul.99.48 read from T0287.t06.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 3nul 50 :IKKDFEEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27039 # 1colA.99.62 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 T0287 99 :L 1colA 63 :L T0287 102 :IAENPN 1colA 66 :ITANPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27041 # 1f74A.99.150 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 99 :LHAIAENPN 1f74A 151 :FGELYKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27042 # 1lc5A.99.280 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 99 :LHAIAENPN 1lc5A 281 :YQALCQLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27043 # 1zz1A.99.83 read from T0287.t06.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 T0287 99 :LHAIAENP 1zz1A 84 :MKRVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27044 # 1t1vA.99.49 read from T0287.t06.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIA 1t1vA 50 :MRTLA T0287 105 :NPN 1t1vA 56 :NPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27046 # 1kpsB.99.142 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 99 :LHAIAENPN 1kpsB 561 :LLAFVTKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27047 # 1uhvA.99.38 read from T0287.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)P106 (1uhvA)I46 because E (beta_S) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1uhvA 39 :LKYVKEN T0287 107 :N 1uhvA 47 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=27049 # 1k5nA.99.167 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAEN 1k5nA 168 :LRRYLEN T0287 107 :N 1k5nA 176 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=27051 # 1h80A.99.45 read from T0287.t06.many.frag # found chain 1h80A in training set T0287 99 :LHAIAENPN 1h80A 73 :INAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27052 # 1a4iA.99.84 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 99 :LHAIAENPN 1a4iA 85 :ITSLNEDST Number of specific fragments extracted= 1 number of extra gaps= 0 total=27053 # 1q79A.99.401 read from T0287.t06.many.frag # found chain 1q79A in template set T0287 99 :LHAIAENPN 1q79A 402 :VGSLEKNEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27054 # 1g8mA.99.132 read from T0287.t06.many.frag # found chain 1g8mA in training set Warning: unaligning (T0287)N105 (1g8mA)N139 because G (3-10) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1g8mA 133 :LRAAAK T0287 106 :PN 1g8mA 140 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27056 # 1q6uA.99.106 read from T0287.t06.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N107 (1q6uA)G115 because T (delta_L) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1q6uA 107 :REKFAKEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27057 # 1gvjA.99.79 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIA 1gvjA 375 :WGKRK T0287 105 :NPN 1gvjA 381 :KPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27059 # 2ffsA.99.28 read from T0287.t06.many.frag # found chain 2ffsA in template set T0287 99 :LHAIAENPN 2ffsA 29 :LVCRAREPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27060 # 1fi4A.99.364 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 99 :LHAIAENPN 1fi4A 345 :FNHQFESSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27061 # 1wa5C.99.315 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 99 :LHAIAENPN 1wa5C 316 :LTAVTRIPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27062 # 1zl0A.99.71 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 99 :LHAIAENPN 1zl0A 70 :LHNAFDMPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27063 # 1rloA.99.92 read from T0287.t06.many.frag # found chain 1rloA in template set T0287 99 :LHAIAENPN 1rloA 93 :IGELLKDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27064 # 1z5zA.99.155 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 99 :LHAIAENPN 1z5zA 791 :ISKFQNNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27065 # 1ye8A.99.121 read from T0287.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. T0287 99 :LHAIAE 1ye8A 122 :VRQIMH T0287 106 :PN 1ye8A 129 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27067 # 1vjhA.99.20 read from T0287.t06.many.frag # found chain 1vjhA in template set T0287 99 :LHAIAENPN 1vjhA 21 :FSAFVEDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27068 # 1uq5A.99.210 read from T0287.t06.many.frag # found chain 1uq5A in training set Warning: unaligning (T0287)N107 (1uq5A)Q223 because L (left) conformation "forbidden" or filtered. T0287 99 :LHAIAENP 1uq5A 215 :STAIQESN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27069 # 1lniA.99.18 read from T0287.t06.many.frag # found chain 1lniA in training set Warning: unaligning (T0287)P106 because of BadResidue code BAD_PEPTIDE in next template residue (1lniA)P27 Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE at template residue (1lniA)P27 T0287 99 :LHAIAEN 1lniA 19 :LNLIASD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27070 # 1w79A.99.8 read from T0287.t06.many.frag # found chain 1w79A in template set T0287 99 :LHAIAENPN 1w79A 9 :IDAILEDPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27071 # 3nul.100.49 read from T0287.t06.many.frag # found chain 3nul in training set T0287 100 :HAIAENPNF 3nul 51 :KKDFEEPGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27072 # 1n5uA.100.261 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)F108 (1n5uA)S270 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENPN 1n5uA 262 :KYICENQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27073 # 1g5aA.100.83 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 100 :HAIAENPNF 1g5aA 84 :IARENNPDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27074 # 1y1pA.100.115 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 100 :HAIAENPNF 1y1pA 117 :RAAAATPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27075 # 1q92A.100.61 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N107 (1q92A)N100 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1q92A 93 :ISIWESK T0287 108 :F 1q92A 101 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=27077 # 2ffsA.100.29 read from T0287.t06.many.frag # found chain 2ffsA in template set T0287 100 :HAIAENPNF 2ffsA 30 :VCRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27078 # 1gvjA.100.80 read from T0287.t06.many.frag # found chain 1gvjA in training set T0287 100 :HAIAENPNF 1gvjA 376 :GKRKNKPKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27079 # 1f74A.100.151 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 100 :HAIAENPNF 1f74A 152 :GELYKNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27080 # 1colA.100.63 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)H100 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)K65 Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1colA 66 :ITA T0287 106 :PNF 1colA 70 :PAM Number of specific fragments extracted= 2 number of extra gaps= 2 total=27082 # 1kpsB.100.143 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 100 :HAIAENPNF 1kpsB 562 :LAFVTKPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27083 # 1yw4A.100.236 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N105 (1yw4A)N242 because D (zeta) conformation "forbidden" or filtered. T0287 100 :HAIAE 1yw4A 237 :RGLLS T0287 106 :PNF 1yw4A 243 :PQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27085 # 1zz1A.100.84 read from T0287.t06.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N105 (1zz1A)L90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 T0287 100 :HAIAE 1zz1A 85 :KRVSN T0287 106 :P 1zz1A 91 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=27087 # 1k5nA.100.168 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1k5nA 169 :RRYLEN T0287 107 :NF 1k5nA 176 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27089 # 1z5zA.100.156 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 100 :HAIAENPNF 1z5zA 792 :SKFQNNPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27090 # 1g8mA.100.133 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 100 :HAIAENPNF 1g8mA 134 :RAAAKNHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27091 # 1fi4A.100.365 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. T0287 100 :HAIAENP 1fi4A 346 :NHQFESS T0287 108 :F 1fi4A 354 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=27093 # 1t1vA.100.50 read from T0287.t06.many.frag # found chain 1t1vA in training set Warning: unaligning (T0287)E104 (1t1vA)G55 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIA 1t1vA 51 :RTLA T0287 105 :NPNF 1t1vA 56 :NPKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27095 # 1h80A.100.46 read from T0287.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. T0287 100 :HAIAENPN 1h80A 74 :NAISRKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27096 # 2bptA.100.685 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 100 :HAIAENPNF 2bptA 686 :AQMISNPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27097 # 1lc5A.100.281 read from T0287.t06.many.frag # found chain 1lc5A in training set T0287 100 :HAIAENPNF 1lc5A 282 :QALCQLPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27098 # 1a4iA.100.85 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 100 :HAIAENPNF 1a4iA 86 :TSLNEDSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27099 # 1q6uA.100.107 read from T0287.t06.many.frag # found chain 1q6uA in template set Warning: unaligning (T0287)N105 (1q6uA)E113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1q6uA)G115 because T (delta_L) conformation "forbidden" or filtered. T0287 100 :HAIAE 1q6uA 108 :EKFAK T0287 106 :P 1q6uA 114 :K T0287 108 :F 1q6uA 116 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27102 # 1l0bA.100.23 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 100 :HAIAEN 1l0bA 1612 :QKFAEK T0287 108 :F 1l0bA 1620 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27104 # 1zl0A.100.72 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 100 :HAIAENPNF 1zl0A 71 :HNAFDMPDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27105 # 1vjhA.100.21 read from T0287.t06.many.frag # found chain 1vjhA in template set T0287 100 :HAIAENPNF 1vjhA 22 :SAFVEDTNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27106 # 1z7xW.100.418 read from T0287.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)N105 (1z7xW)Q423 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1z7xW 418 :VESVR T0287 106 :PNF 1z7xW 424 :PGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27108 # 1ye8A.100.122 read from T0287.t06.many.frag # found chain 1ye8A in training set T0287 100 :HAIAENPNF 1ye8A 123 :RQIMHDPNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27109 # 1l9vA.100.114 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N105 (1l9vA)N120 because P (beta_P) conformation "forbidden" or filtered. T0287 100 :HAIAE 1l9vA 115 :VIRKE T0287 106 :PNF 1l9vA 121 :PQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27111 # 1lu4A.100.47 read from T0287.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N105 (1lu4A)N1053 because D (zeta) conformation "forbidden" or filtered. T0287 100 :HAIAE 1lu4A 1048 :QVAAA T0287 106 :PNF 1lu4A 1054 :PAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27113 # 1sra.100.44 read from T0287.t06.many.frag # found chain 1sra in template set T0287 100 :HAIAENPNF 1sra 180 :KKIHENEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27114 # 3nul.101.50 read from T0287.t06.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAENP 3nul 52 :KDFEEP T0287 108 :FL 3nul 59 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27116 # 1g5aA.101.84 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 101 :AIAENPNFL 1g5aA 85 :ARENNPDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27117 # 1n5uA.101.262 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 101 :AIAENPNFL 1n5uA 263 :YICENQDSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27118 # 2ffsA.101.30 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 T0287 101 :AIAENPNF 2ffsA 31 :CRAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27119 # 1gvjA.101.81 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENPNF 1gvjA 377 :KRKNKPKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=27120 # 1q92A.101.62 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 101 :AIAENPNFL 1q92A 94 :SIWESKNFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27121 # 1yw4A.101.237 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 101 :AIAENPNFL 1yw4A 238 :GLLSNPQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27122 # 1fi4A.101.366 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 101 :AIAENPNFL 1fi4A 347 :HQFESSNFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27123 # 1kpsB.101.144 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 101 :AIAENPNFL 1kpsB 563 :AFVTKPNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27124 # 1colA.101.64 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)A101 because of BadResidue code BAD_PEPTIDE at template residue (1colA)K65 Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1colA 66 :ITA T0287 106 :PNFL 1colA 70 :PAMK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27126 # 1f74A.101.152 read from T0287.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N105 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1f74A 153 :ELYK T0287 106 :PNFL 1f74A 158 :PKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27128 # 1y1pA.101.116 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 101 :AIAENPNFL 1y1pA 118 :AAAATPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27129 # 1w23A.101.313 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1w23A 314 :AKAKE T0287 107 :NFL 1w23A 320 :GFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27131 # 2bptA.101.686 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 101 :AIAENPNFL 2bptA 687 :QMISNPNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27132 # 1k5nA.101.169 read from T0287.t06.many.frag # found chain 1k5nA in training set Warning: unaligning (T0287)P106 (1k5nA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1k5nA 170 :RYLEN T0287 107 :NFL 1k5nA 176 :KET Number of specific fragments extracted= 2 number of extra gaps= 1 total=27134 # 1lu4A.101.48 read from T0287.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N105 (1lu4A)N1053 because D (zeta) conformation "forbidden" or filtered. T0287 101 :AIAE 1lu4A 1049 :VAAA T0287 106 :PNFL 1lu4A 1054 :PAVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27136 # 1g8mA.101.134 read from T0287.t06.many.frag # found chain 1g8mA in training set T0287 101 :AIAENPNFL 1g8mA 135 :AAAKNHARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27137 # 1z5zA.101.157 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 101 :AIAENPNFL 1z5zA 793 :KFQNNPSVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27138 # 1l0bA.101.24 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l0bA 1613 :KFAEK T0287 107 :NFL 1l0bA 1619 :RLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27140 # 1z7xW.101.419 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 101 :AIAENPNFL 1z7xW 419 :ESVRQPGCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27141 # 1sra.101.45 read from T0287.t06.many.frag # found chain 1sra in template set T0287 101 :AIAENPNFL 1sra 181 :KIHENEKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27142 # 1l9vA.101.115 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N105 (1l9vA)N120 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1l9vA 116 :IRKE T0287 106 :PNFL 1l9vA 121 :PQDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27144 # 1vjhA.101.22 read from T0287.t06.many.frag # found chain 1vjhA in template set T0287 101 :AIAENPNFL 1vjhA 23 :AFVEDTNRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27145 # 1h80A.101.47 read from T0287.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENPN 1h80A 75 :AISRKPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27146 # 1l8aA.101.418 read from T0287.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 101 :AIAEN 1l8aA 419 :HIRDR T0287 107 :NFL 1l8aA 425 :NVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27148 # 1zl0A.101.73 read from T0287.t06.many.frag # found chain 1zl0A in template set Warning: unaligning (T0287)N105 (1zl0A)M76 because P (beta_P) conformation "forbidden" or filtered. T0287 101 :AIAE 1zl0A 72 :NAFD T0287 106 :PNFL 1zl0A 77 :PDIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27150 # 1uehA.101.159 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 101 :AIAEN 1uehA 160 :EKVQQ T0287 107 :NFL 1uehA 166 :NLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27152 # 1ye8A.101.123 read from T0287.t06.many.frag # found chain 1ye8A in training set T0287 101 :AIAENPNFL 1ye8A 124 :QIMHDPNVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27153 # 1sbxA.101.54 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 101 :AIAEN 1sbxA 141 :AVCDE T0287 108 :FL 1sbxA 148 :IY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27155 # 1zz1A.101.85 read from T0287.t06.many.frag # found chain 1zz1A in template set Warning: unaligning (T0287)N107 because of BadResidue code BAD_PEPTIDE in next template residue (1zz1A)G93 Warning: unaligning (T0287)F108 because of BadResidue code BAD_PEPTIDE at template residue (1zz1A)G93 Warning: unaligning (T0287)L109 (1zz1A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 101 :AIAENP 1zz1A 86 :RVSNLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27156 # 3nul.102.51 read from T0287.t06.many.frag # found chain 3nul in training set T0287 102 :IAENPNFLF 3nul 53 :DFEEPGFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27157 # 1g5aA.102.85 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 102 :IAENPNFLF 1g5aA 86 :RENNPDWIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27158 # 1n5uA.102.263 read from T0287.t06.many.frag # found chain 1n5uA in template set Warning: unaligning (T0287)N105 (1n5uA)N267 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAE 1n5uA 264 :ICE T0287 106 :PNFLF 1n5uA 268 :QDSIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27160 # 1gvjA.102.82 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IA 1gvjA 378 :RK T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :F 1gvjA 386 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=27163 # 2ffsA.102.31 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 102 :IAENPNF 2ffsA 32 :RAREPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27164 # 1colA.102.65 read from T0287.t06.many.frag # found chain 1colA in template set T0287 102 :IAENPNFLF 1colA 66 :ITANPAMKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27165 # 1q92A.102.63 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 102 :IAENPNFLF 1q92A 95 :IWESKNFFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27166 # 1yw4A.102.238 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 102 :IAENPNFLF 1yw4A 239 :LLSNPQANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27167 # 1w23A.102.314 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1w23A 315 :KAKE T0287 107 :NFL 1w23A 320 :GFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27169 # 1lu4A.102.49 read from T0287.t06.many.frag # found chain 1lu4A in training set T0287 102 :IAENPNFLF 1lu4A 1050 :AAANPAVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27170 # 1f74A.102.153 read from T0287.t06.many.frag # found chain 1f74A in training set Warning: unaligning (T0287)N105 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. T0287 102 :IAE 1f74A 154 :LYK T0287 106 :PNFLF 1f74A 158 :PKVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27172 # 1kpsB.102.145 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 102 :IAENPNFLF 1kpsB 564 :FVTKPNGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27173 # 1z5zA.102.158 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 102 :IAENPNFLF 1z5zA 794 :FQNNPSVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27174 # 1fi4A.102.367 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 102 :IAENPNFLF 1fi4A 348 :QFESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27175 # 2bptA.102.687 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 102 :IAENPNFLF 2bptA 688 :MISNPNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27176 # 1y1pA.102.117 read from T0287.t06.many.frag # found chain 1y1pA in template set T0287 102 :IAENPNFLF 1y1pA 119 :AAATPSVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27177 # 1l9vA.102.116 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 102 :IAENPNFLF 1l9vA 117 :RKENPQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27178 # 1z7xW.102.420 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 102 :IAENPNFLF 1z7xW 420 :SVRQPGCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27179 # 1l0bA.102.25 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1l0bA)R1619 because L (left) conformation "forbidden" or filtered. T0287 102 :IAEN 1l0bA 1614 :FAEK T0287 108 :FLF 1l0bA 1620 :LAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27181 # 1zl0A.102.74 read from T0287.t06.many.frag # found chain 1zl0A in template set T0287 102 :IAENPNFLF 1zl0A 73 :AFDMPDITA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27182 # 1sbxA.102.55 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1sbxA 142 :VCDE T0287 107 :NFLF 1sbxA 147 :HIYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27184 # 1sra.102.46 read from T0287.t06.many.frag # found chain 1sra in template set T0287 102 :IAENPNFLF 1sra 182 :IHENEKRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27185 # 1yt8A.102.452 read from T0287.t06.many.frag # found chain 1yt8A in template set T0287 102 :IAENPNFLF 1yt8A 453 :LSGKPVFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27186 # 1h80A.102.48 read from T0287.t06.many.frag # found chain 1h80A in training set Warning: unaligning (T0287)F108 (1h80A)G82 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1h80A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0287 102 :IAENPN 1h80A 76 :ISRKPN T0287 110 :F 1h80A 84 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=27188 # 1musA.102.62 read from T0287.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0287)N107 (1musA)N68 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAENP 1musA 63 :FIRNP T0287 108 :FLF 1musA 69 :VSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27190 # 1ye8A.102.124 read from T0287.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N105 (1ye8A)D128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 T0287 102 :IAE 1ye8A 125 :IMH T0287 106 :PNFL 1ye8A 129 :PNVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27192 # 1rp0A.102.57 read from T0287.t06.many.frag # found chain 1rp0A in training set Warning: unaligning (T0287)N107 (1rp0A)N63 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAENP 1rp0A 58 :ISKNP T0287 108 :FLF 1rp0A 64 :VQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27194 # 1uehA.102.160 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. T0287 102 :IAEN 1uehA 161 :KVQQ T0287 107 :NFLF 1uehA 166 :NLQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27196 # 1l8aA.102.419 read from T0287.t06.many.frag # found chain 1l8aA in template set Warning: unaligning (T0287)P106 (1l8aA)F424 because G (3-10) conformation "forbidden" or filtered. T0287 102 :IAEN 1l8aA 420 :IRDR T0287 107 :NFLF 1l8aA 425 :NVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27198 # 1a4iA.102.87 read from T0287.t06.many.frag # found chain 1a4iA in training set T0287 102 :IAENPNFLF 1a4iA 88 :LNEDSTVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27199 # 3nul.103.52 read from T0287.t06.many.frag # found chain 3nul in training set T0287 103 :AENPNFLFS 3nul 54 :FEEPGFLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27200 # 1g5aA.103.86 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1g5aA)D91 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AE 1g5aA 87 :EN T0287 106 :P 1g5aA 90 :P T0287 108 :FLFS 1g5aA 92 :WILS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27203 # 1gvjA.103.83 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)E104 (1gvjA)N380 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :A 1gvjA 379 :K T0287 105 :NPNF 1gvjA 381 :KPKM T0287 110 :FS 1gvjA 386 :YE Number of specific fragments extracted= 3 number of extra gaps= 2 total=27206 # 1n5uA.103.264 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 103 :AENPNFLFS 1n5uA 265 :CENQDSISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27207 # 2ffsA.103.32 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 103 :AENPNF 2ffsA 33 :AREPQY T0287 111 :S 2ffsA 41 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27209 # 1yw4A.103.239 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 103 :AENPNFLFS 1yw4A 240 :LSNPQANVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27210 # 1kpsB.103.146 read from T0287.t06.many.frag # found chain 1kpsB in template set T0287 103 :AENPNFLFS 1kpsB 565 :VTKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27211 # 1z5zA.103.159 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 103 :AENPNFLFS 1z5zA 795 :QNNPSVKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27212 # 1lu4A.103.50 read from T0287.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N105 (1lu4A)N1053 because D (zeta) conformation "forbidden" or filtered. T0287 103 :AE 1lu4A 1051 :AA T0287 106 :PNFLFS 1lu4A 1054 :PAVTFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27214 # 1colA.103.66 read from T0287.t06.many.frag # found chain 1colA in template set T0287 103 :AENPNFLFS 1colA 67 :TANPAMKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27215 # 1q92A.103.64 read from T0287.t06.many.frag # found chain 1q92A in training set T0287 103 :AENPNFLFS 1q92A 96 :WESKNFFFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27216 # 1f74A.103.154 read from T0287.t06.many.frag # found chain 1f74A in training set T0287 103 :AENPNFLFS 1f74A 155 :YKNPKVLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27217 # 1yt8A.103.453 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1yt8A 454 :S T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27219 # 1w23A.103.315 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1w23A 316 :AKE T0287 107 :NFLFS 1w23A 320 :GFVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27221 # 1l9vA.103.117 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 103 :AENPNFLFS 1l9vA 118 :KENPQDILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27222 # 1z7xW.103.421 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 103 :AENPNFLFS 1z7xW 421 :VRQPGCLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27223 # 2bptA.103.688 read from T0287.t06.many.frag # found chain 2bptA in template set T0287 103 :AENPNFLFS 2bptA 689 :ISNPNARRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27224 # 1fi4A.103.368 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 103 :AENPNFLF 1fi4A 349 :FESSNFTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27225 # 2jdxA.103.201 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 103 :AEN 2jdxA 239 :AAQ T0287 107 :NFLFS 2jdxA 243 :KFVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27227 # 1sbxA.103.56 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1sbxA)H147 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1sbxA 143 :CDE T0287 108 :FLFS 1sbxA 148 :IYCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27229 # 1l0bA.103.26 read from T0287.t06.many.frag # found chain 1l0bA in template set Warning: unaligning (T0287)P106 (1l0bA)Y1618 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 1l0bA 1615 :AEK T0287 107 :NFLFS 1l0bA 1619 :RLALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27231 # 1eokA.103.18 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N105 (1eokA)N21 because L (left) conformation "forbidden" or filtered. T0287 103 :AE 1eokA 19 :GR T0287 106 :PNFLFS 1eokA 22 :PTFKLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27233 # 1ye8A.103.125 read from T0287.t06.many.frag # found chain 1ye8A in training set Warning: unaligning (T0287)N107 (1ye8A)N130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1ye8A)V134 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1ye8A)V134 T0287 103 :AENP 1ye8A 126 :MHDP T0287 108 :FL 1ye8A 131 :VN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27235 # 1musA.103.63 read from T0287.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0287)N107 (1musA)N68 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1musA 64 :IRNP T0287 108 :FLFS 1musA 69 :VSAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27237 # 1rlzA.103.213 read from T0287.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. T0287 103 :A 1rlzA 214 :I T0287 105 :NPNFLFS 1rlzA 216 :NPESVYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27239 # 1oygA.103.31 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 103 :AENPNFLFS 1oygA 58 :QKNEKYQVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27240 # 2f2gA.103.95 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AEN 2f2gA 96 :GSK T0287 107 :NFLFS 2f2gA 100 :DVDFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27242 # 1kcfA.103.198 read from T0287.t06.many.frag # found chain 1kcfA in template set Warning: unaligning (T0287)P106 (1kcfA)Q202 because L (left) conformation "forbidden" or filtered. T0287 103 :AEN 1kcfA 199 :IDG T0287 107 :NFLFS 1kcfA 203 :KILFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27244 # 1rp0A.103.58 read from T0287.t06.many.frag # found chain 1rp0A in training set Warning: unaligning (T0287)N107 (1rp0A)N63 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1rp0A 59 :SKNP T0287 108 :FLFS 1rp0A 64 :VQVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27246 # 1x9iA.103.8 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)N107 (1x9iA)N13 because G (3-10) conformation "forbidden" or filtered. T0287 103 :AENP 1x9iA 9 :LNWE T0287 108 :FLFS 1x9iA 14 :YILR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27248 # 1gvjA.104.84 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)N107 (1gvjA)K383 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENP 1gvjA 380 :NKP T0287 108 :F 1gvjA 384 :M T0287 110 :FSK 1gvjA 386 :YEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=27251 # 3nul.104.53 read from T0287.t06.many.frag # found chain 3nul in training set T0287 104 :ENPNFLFSK 3nul 55 :EEPGFLAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27252 # 1yw4A.104.240 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N105 (1yw4A)N242 because D (zeta) conformation "forbidden" or filtered. T0287 104 :E 1yw4A 241 :S T0287 106 :PNFLFSK 1yw4A 243 :PQANVPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27254 # 1n5uA.104.265 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 104 :ENPNFLFSK 1n5uA 266 :ENQDSISSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27255 # 1kpsB.104.147 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1kpsB 566 :TKPNGALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27256 # 1g5aA.104.87 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 104 :ENPNFLFSK 1g5aA 88 :NNPDWILSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27257 # 2ffsA.104.33 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 Warning: unaligning (T0287)S111 (2ffsA)V41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (2ffsA)G42 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :ENPNF 2ffsA 34 :REPQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27258 # 1z5zA.104.160 read from T0287.t06.many.frag # found chain 1z5zA in template set T0287 104 :ENPNFLFSK 1z5zA 796 :NNPSVKFIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27259 # 1eokA.104.19 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 104 :ENPNFLFSK 1eokA 20 :RNPTFKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27260 # 1x9iA.104.9 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1x9iA 10 :NWENYILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27261 # 1z7xW.104.422 read from T0287.t06.many.frag # found chain 1z7xW in template set Warning: unaligning (T0287)S111 (1z7xW)E429 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPNFLF 1z7xW 422 :RQPGCLL T0287 112 :K 1z7xW 430 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=27263 # 2jdxA.104.202 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 2jdxA 240 :AQ T0287 107 :NFLFSK 2jdxA 243 :KFVTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27265 # 1oygA.104.32 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)N105 (1oygA)N60 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :E 1oygA 59 :K T0287 106 :PNFLFSK 1oygA 61 :EKYQVPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27267 # 1q92A.104.65 read from T0287.t06.many.frag # found chain 1q92A in training set Warning: unaligning (T0287)N105 (1q92A)S98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1q92A)E104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1q92A)L105 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :E 1q92A 97 :E T0287 106 :PNFLF 1q92A 99 :KNFFF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27269 # 1yt8A.104.454 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)E104 (1yt8A)G455 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 2 total=27270 # 1sbxA.104.57 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1sbxA 144 :DE T0287 107 :NFLFSK 1sbxA 147 :HIYCSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27272 # 1lu4A.104.51 read from T0287.t06.many.frag # found chain 1lu4A in training set Warning: unaligning (T0287)N105 (1lu4A)N1053 because D (zeta) conformation "forbidden" or filtered. T0287 104 :E 1lu4A 1052 :A T0287 106 :PNFLFSK 1lu4A 1054 :PAVTFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27274 # 1colA.104.67 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)N105 (1colA)N69 because P (beta_P) conformation "forbidden" or filtered. T0287 104 :E 1colA 68 :A T0287 106 :PNFLFSK 1colA 70 :PAMKINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27276 # 1ox0A.104.105 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. T0287 104 :ENPNFLFS 1ox0A 87 :NHANLDVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27277 # 1rlzA.104.214 read from T0287.t06.many.frag # found chain 1rlzA in template set Warning: unaligning (T0287)E104 (1rlzA)N215 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N105 (1rlzA)N216 because E (beta_S) conformation "forbidden" or filtered. T0287 106 :PNFLFSK 1rlzA 217 :PESVYYW Number of specific fragments extracted= 1 number of extra gaps= 1 total=27278 # 1l9vA.104.118 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 104 :ENPNFLFSK 1l9vA 119 :ENPQDILFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27279 # 2f2gA.104.96 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 2f2gA 97 :SK T0287 107 :NFLFSK 2f2gA 100 :DVDFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=27281 # 1fi4A.104.369 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)N107 (1fi4A)N353 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 104 :ENP 1fi4A 350 :ESS T0287 108 :FLF 1fi4A 354 :FTA T0287 112 :K 1fi4A 358 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=27284 # 1tjvA.104.400 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 104 :EN 1tjvA 401 :ET T0287 107 :NFLFSK 1tjvA 404 :GITINK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27286 # 1qlmA.104.269 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1qlmA)Y274 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1qlmA 270 :EE T0287 107 :N 1qlmA 273 :D T0287 109 :LFSK 1qlmA 275 :DFYK Number of specific fragments extracted= 3 number of extra gaps= 2 total=27289 # 1w23A.104.279 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)N105 (1w23A)S281 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P106 (1w23A)N282 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G283 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :E 1w23A 280 :E T0287 108 :FLFSK 1w23A 284 :FYVGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27291 # 1w23A.104.316 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 104 :EN 1w23A 317 :KE T0287 108 :FL 1w23A 321 :FV T0287 111 :SK 1w23A 324 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=27294 # 1pea.104.301 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. T0287 104 :EN 1pea 302 :AA T0287 107 :NFLFSK 1pea 305 :NWRVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=27296 # 1musA.104.64 read from T0287.t06.many.frag # found chain 1musA in template set Warning: unaligning (T0287)N105 (1musA)N66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1musA)N68 because G (3-10) conformation "forbidden" or filtered. T0287 104 :E 1musA 65 :R T0287 106 :P 1musA 67 :P T0287 108 :FLFSK 1musA 69 :VSAEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27299 # 1rz4A.104.55 read from T0287.t06.many.frag # found chain 1rz4A in template set T0287 104 :ENPNFLFSK 1rz4A 56 :FNPAFFQTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27300 # 1yw4A.105.241 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)N105 (1yw4A)N242 because D (zeta) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1yw4A 243 :PQANVPDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27301 # 1gvjA.105.85 read from T0287.t06.many.frag # found chain 1gvjA in training set T0287 105 :NPNFLFSKF 1gvjA 381 :KPKMNYEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27302 # 1oygA.105.33 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)S111 (1oygA)P66 because P (beta_P) conformation "forbidden" or filtered. T0287 105 :NPNFLF 1oygA 60 :NEKYQV T0287 112 :KF 1oygA 67 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27304 # 1n5uA.105.266 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 105 :NPNFLFSKF 1n5uA 267 :NQDSISSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27305 # 1ox0A.105.106 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 T0287 105 :NPNFLFSK 1ox0A 88 :HANLDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27306 # 1sbxA.105.58 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1sbxA 145 :E T0287 107 :NFLFSKF 1sbxA 147 :HIYCSRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27308 # 1eokA.105.20 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 105 :NPNFLFSKF 1eokA 21 :NPTFKLKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27309 # 1x9iA.105.10 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)S111 (1x9iA)R17 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLF 1x9iA 11 :WENYIL T0287 113 :F 1x9iA 19 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27311 # 2ffsA.105.34 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 105 :NPNF 2ffsA 35 :EPQY T0287 111 :SKF 2ffsA 41 :VGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27313 # 1qlmA.105.270 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1qlmA 271 :E T0287 107 :NFLFSKF 1qlmA 273 :DYDFYKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27315 # 2jdxA.105.203 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 2jdxA 241 :Q T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27317 # 1tjvA.105.401 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. T0287 105 :N 1tjvA 402 :T T0287 108 :FLFSKF 1tjvA 405 :ITINKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27319 # 2f2gA.105.97 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 105 :N 2f2gA 98 :K T0287 108 :FLFSKF 2f2gA 101 :VDFSTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27321 # 1w23A.105.317 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1w23A 318 :E T0287 107 :NFL 1w23A 320 :GFV T0287 111 :SKF 1w23A 324 :LNG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27324 # 1pea.105.302 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F108 (1pea)W306 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1pea 303 :A T0287 109 :LFSKF 1pea 307 :RVEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27326 # 1g5aA.105.88 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N105 (1g5aA)N89 because D (zeta) conformation "forbidden" or filtered. T0287 106 :PNFLFSKF 1g5aA 90 :PDWILSNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27327 # 1fi4A.105.370 read from T0287.t06.many.frag # found chain 1fi4A in template set T0287 105 :NPNFLFSKF 1fi4A 351 :SSNFTAREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27328 # 1zvdA.105.240 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 105 :NPNFLFSKF 1zvdA 609 :IPQHLLKTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27329 # 3nul.105.54 read from T0287.t06.many.frag # found chain 3nul in training set Warning: unaligning (T0287)N107 (3nul)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (3nul)G64 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NP 3nul 56 :EP T0287 108 :FLFSK 3nul 59 :FLAPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27331 # 1kpsB.105.148 read from T0287.t06.many.frag # found chain 1kpsB in template set Warning: unaligning (T0287)K112 (1kpsB)T574 because Y (epsilon') conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1kpsB 567 :KPNGALE T0287 113 :F 1kpsB 575 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=27333 # 1rz4A.105.56 read from T0287.t06.many.frag # found chain 1rz4A in template set T0287 105 :NPNFLFSKF 1rz4A 57 :NPAFFQTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27334 # 1yt8A.105.455 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 105 :NPNFLFS 1yt8A 456 :KPVFLLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27335 # 1uehA.105.163 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. T0287 105 :N 1uehA 164 :Q T0287 108 :FLFSKF 1uehA 167 :LQPDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27337 # 2b59B.105.152 read from T0287.t06.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :NP 2b59B 153 :HF T0287 108 :FLFSKF 2b59B 156 :ATSSDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27339 # 1u8xX.105.455 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)K112 (1u8xX)E440 because P (beta_P) conformation "forbidden" or filtered. T0287 105 :N 1u8xX 433 :A T0287 107 :NFL 1u8xX 435 :KDF T0287 113 :F 1u8xX 441 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27342 # 1z7xW.105.423 read from T0287.t06.many.frag # found chain 1z7xW in template set T0287 105 :NPNFLFSKF 1z7xW 423 :QPGCLLEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27343 # 1colA.105.68 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F108 (1colA)M72 because G (3-10) conformation "forbidden" or filtered. T0287 105 :NPN 1colA 69 :NPA T0287 109 :LFSKF 1colA 73 :KINKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27345 # 1s4nA.105.203 read from T0287.t06.many.frag # found chain 1s4nA in template set T0287 105 :NPNFLFSKF 1s4nA 298 :NPEYLDENN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27346 # 1wteA.105.97 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 105 :NP 1wteA 98 :NE T0287 108 :FLFSKF 1wteA 101 :FIHPCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27348 # 1oqjA.105.76 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. T0287 105 :N 1oqjA 162 :S T0287 107 :NFLFSKF 1oqjA 164 :QIDFYQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27350 # 1ox0A.106.107 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)N107 (1ox0A)N90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 106 :P 1ox0A 89 :A T0287 108 :FLFSK 1ox0A 91 :LDVEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27352 # 1oygA.106.34 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 106 :PNFLFSKFD 1oygA 61 :EKYQVPEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27353 # 1yw4A.106.242 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 106 :PNFLFSKFD 1yw4A 243 :PQANVPDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27354 # 1gvjA.106.86 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)L109 (1gvjA)N385 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNF 1gvjA 382 :PKM T0287 110 :FSKFD 1gvjA 386 :YEKLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27356 # 1n5uA.106.267 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 106 :PNFLFSKFD 1n5uA 268 :QDSISSKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27357 # 1zvdA.106.241 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 106 :PNFLFSKFD 1zvdA 610 :PQHLLKTFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27358 # 1eokA.106.21 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 106 :PNFLFSKFD 1eokA 22 :PTFKLKDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27359 # 1sbxA.106.59 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)P106 (1sbxA)L146 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1sbxA 147 :HIYCSRCT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27360 # 1x9iA.106.11 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLFS 1x9iA 12 :ENYILR T0287 113 :FD 1x9iA 19 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27362 # 1pea.106.303 read from T0287.t06.many.frag # found chain 1pea in template set Warning: unaligning (T0287)P106 (1pea)G304 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1pea)N305 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1pea 306 :WRVEDVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27363 # 2f2gA.106.98 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)P106 (2f2gA)W99 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFD 2f2gA 101 :VDFSTVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27364 # 1qlmA.106.271 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)P106 (1qlmA)A272 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1qlmA 273 :DYDFYKID Number of specific fragments extracted= 1 number of extra gaps= 1 total=27365 # 1tjvA.106.402 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)P106 (1tjvA)K403 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1tjvA 404 :GITINKLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=27366 # 2jdxA.106.204 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)P106 (2jdxA)G242 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF Number of specific fragments extracted= 1 number of extra gaps= 2 total=27367 # 1odmA.106.167 read from T0287.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0287)N107 (1odmA)N169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1odmA)K176 because E (beta_S) conformation "forbidden" or filtered. T0287 106 :P 1odmA 168 :E T0287 108 :FLFSKF 1odmA 170 :FFARHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27369 # 1uehA.106.164 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)P106 (1uehA)G165 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1uehA)N166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1uehA)D173 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1uehA 167 :LQPDQI Number of specific fragments extracted= 1 number of extra gaps= 2 total=27370 # 1t4bA.106.210 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)P106 (1t4bA)G211 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFSKFD 1t4bA 212 :ELPVDNFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27371 # 2ffsA.106.35 read from T0287.t06.many.frag # found chain 2ffsA in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE in next template residue (2ffsA)V40 Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE at template residue (2ffsA)V40 T0287 106 :PNF 2ffsA 36 :PQY T0287 111 :SKFD 2ffsA 41 :VGLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27373 # 1yt8A.106.456 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)F113 (1yt8A)G464 because S (epsilon) conformation "forbidden" or filtered. T0287 106 :PNFLFSK 1yt8A 457 :PVFLLDG T0287 114 :D 1yt8A 465 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=27375 # 1pkhA.106.14 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)P106 (1pkhA)K15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FD 1pkhA 22 :FN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27377 # 2b59B.106.153 read from T0287.t06.many.frag # found chain 2b59B in template set T0287 106 :PNFLFSKFD 2b59B 154 :FGATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27378 # 1fi4A.106.371 read from T0287.t06.many.frag # found chain 1fi4A in template set Warning: unaligning (T0287)S111 (1fi4A)R357 because Y (epsilon') conformation "forbidden" or filtered. T0287 106 :PNFLF 1fi4A 352 :SNFTA T0287 112 :KFD 1fi4A 358 :ELD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27380 # 1u8xX.106.456 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)P106 (1u8xX)N434 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 T0287 107 :NFL 1u8xX 435 :KDF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 3 total=27382 # 1w23A.106.318 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)P106 (1w23A)Q319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FL 1w23A 321 :FV T0287 111 :SKF 1w23A 324 :LNG Number of specific fragments extracted= 2 number of extra gaps= 3 total=27384 # 1u8xX.106.316 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 106 :P 1u8xX 294 :E T0287 109 :L 1u8xX 297 :I T0287 113 :FD 1u8xX 301 :CD Number of specific fragments extracted= 3 number of extra gaps= 2 total=27387 # 1up8A.106.170 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 106 :PNFLFSKFD 1up8A 170 :REIEFSEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27388 # 1qw9A.106.11 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)N107 (1qw9A)D13 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 106 :P 1qw9A 12 :K T0287 108 :FLF 1qw9A 14 :FKI T0287 113 :FD 1qw9A 19 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=27391 # 1wteA.106.98 read from T0287.t06.many.frag # found chain 1wteA in template set Warning: unaligning (T0287)N107 (1wteA)P100 because C (cis) conformation "forbidden" or filtered. T0287 106 :P 1wteA 99 :E T0287 108 :FLFSKFD 1wteA 101 :FIHPCFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27393 # 1s4nA.106.204 read from T0287.t06.many.frag # found chain 1s4nA in template set T0287 106 :PNFLFSKFD 1s4nA 299 :PEYLDENNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27394 # 1oqjA.106.77 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)P106 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S111 (1oqjA)Y168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0287 107 :NFLF 1oqjA 164 :QIDF T0287 113 :FD 1oqjA 170 :HD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27396 # 1oygA.107.35 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 107 :NFLFSKFDR 1oygA 62 :KYQVPEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27397 # 1ox0A.107.108 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)N107 (1ox0A)N90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFSK 1ox0A 91 :LDVEA T0287 115 :R 1ox0A 98 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=27399 # 1zvdA.107.242 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 107 :NFLFSKFDR 1zvdA 611 :QHLLKTFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27400 # 1yw4A.107.243 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 107 :NFLFSKFDR 1yw4A 244 :QANVPDLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27401 # 1pkhA.107.15 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 107 :NFLFS 1pkhA 16 :RIIIK T0287 113 :FDR 1pkhA 22 :FNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27403 # 1eokA.107.22 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 107 :NFLFSKFDR 1eokA 23 :TFKLKDIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27404 # 1tjvA.107.403 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)N107 (1tjvA)G404 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1tjvA 405 :ITINKLSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27405 # 1qlmA.107.272 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 107 :NFLFSKFDR 1qlmA 273 :DYDFYKIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27406 # 1t4bA.107.211 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F113 (1t4bA)F218 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFSK 1t4bA 212 :ELPVDN T0287 114 :DR 1t4bA 219 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27408 # 1sbxA.107.60 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)D114 (1sbxA)T154 because P (beta_P) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1sbxA 147 :HIYCSRC T0287 115 :R 1sbxA 155 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=27410 # 1pea.107.304 read from T0287.t06.many.frag # found chain 1pea in template set T0287 107 :NFLFSKFDR 1pea 305 :NWRVEDVQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27411 # 1qw9A.107.12 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 107 :NFLF 1qw9A 13 :DFKI T0287 113 :FDR 1qw9A 19 :IDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27413 # 1n5uA.107.268 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 107 :NFLFSKFDR 1n5uA 269 :DSISSKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27414 # 1yt8A.107.457 read from T0287.t06.many.frag # found chain 1yt8A in template set Warning: unaligning (T0287)K112 (1yt8A)G463 because T (delta_L) conformation "forbidden" or filtered. T0287 107 :NFLFS 1yt8A 458 :VFLLD T0287 113 :FDR 1yt8A 464 :GTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27416 # 1y93A.107.41 read from T0287.t06.many.frag # found chain 1y93A in template set T0287 107 :NFLFSKFDR 1y93A 146 :PLKFSKINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27417 # 1up8A.107.171 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 107 :NFLFSKFDR 1up8A 171 :EIEFSEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27418 # 2f2gA.107.99 read from T0287.t06.many.frag # found chain 2f2gA in template set Warning: unaligning (T0287)N107 (2f2gA)D100 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 2f2gA 101 :VDFSTVVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27419 # 1x9iA.107.12 read from T0287.t06.many.frag # found chain 1x9iA in training set Warning: unaligning (T0287)K112 (1x9iA)R18 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFS 1x9iA 13 :NYILR T0287 113 :FDR 1x9iA 19 :VDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27421 # 1uehA.107.165 read from T0287.t06.many.frag # found chain 1uehA in training set T0287 107 :NFLFSKFDR 1uehA 166 :NLQPDQIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27422 # 1gvjA.107.87 read from T0287.t06.many.frag # found chain 1gvjA in training set Warning: unaligning (T0287)N107 (1gvjA)K383 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1gvjA 384 :MNYEKLSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27423 # 2b59B.107.154 read from T0287.t06.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)N107 (2b59B)G155 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27424 # 1w4sA.107.113 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)N107 (1w4sA)K1043 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1w4sA 1044 :LCPENFRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27425 # 1odmA.107.168 read from T0287.t06.many.frag # found chain 1odmA in training set Warning: unaligning (T0287)N107 (1odmA)N169 because G (3-10) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1odmA 170 :FFARHFKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27426 # 1u8xX.107.317 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)N107 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)F296 Warning: unaligning (T0287)F108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)F296 Warning: unaligning (T0287)F110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u8xX)S299 Warning: unaligning (T0287)S111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)S299 Warning: unaligning (T0287)K112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u8xX)Q300 T0287 109 :L 1u8xX 297 :I T0287 113 :FDR 1u8xX 301 :CDM Number of specific fragments extracted= 2 number of extra gaps= 2 total=27428 # 1srvA.107.114 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)N107 (1srvA)G306 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1srvA 307 :FKLENATL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27429 # 2jdxA.107.205 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)D114 (2jdxA)E250 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 2jdxA 243 :KFVTTEF T0287 115 :R 2jdxA 251 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27431 # 1e4cP.107.43 read from T0287.t06.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)D114 (1e4cP)T51 because E (beta_S) conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1e4cP 44 :GIPYEKL T0287 115 :R 1e4cP 52 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=27433 # 1oqjA.107.78 read from T0287.t06.many.frag # found chain 1oqjA in training set Warning: unaligning (T0287)K112 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1oqjA)K172 because G (3-10) conformation "forbidden" or filtered. T0287 107 :NFLFS 1oqjA 164 :QIDFY T0287 113 :FD 1oqjA 170 :HD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27435 # 1rqpA.107.171 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0287 107 :NFLFSKF 1rqpA 172 :GFPLSEV T0287 115 :R 1rqpA 180 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=27437 # 1w23A.107.319 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)N107 (1w23A)G320 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 1w23A 321 :FVGLNGHR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27438 # 1ox0A.108.109 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 108 :FLFSK 1ox0A 91 :LDVEA T0287 115 :RS 1ox0A 98 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27440 # 1oygA.108.36 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 108 :FLFSKFDRS 1oygA 63 :YQVPEFDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27441 # 1zvdA.108.243 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 108 :FLFSKFDRS 1zvdA 612 :HLLKTFDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27442 # 1qw9A.108.13 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 108 :FLF 1qw9A 14 :FKI T0287 113 :FDRS 1qw9A 19 :IDKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27444 # 1yw4A.108.244 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFS 1yw4A 245 :ANVP T0287 113 :FDRS 1yw4A 250 :LDED Number of specific fragments extracted= 2 number of extra gaps= 1 total=27446 # 1pkhA.108.16 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 108 :FLFS 1pkhA 17 :IIIK T0287 113 :FDRS 1pkhA 22 :FNKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27448 # 1tjvA.108.404 read from T0287.t06.many.frag # found chain 1tjvA in template set T0287 108 :FLFSKFDRS 1tjvA 405 :ITINKLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27449 # 1t4bA.108.212 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1t4bA 213 :LPVDNF T0287 115 :RS 1t4bA 220 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27451 # 1eokA.108.23 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 108 :FLFSKFDRS 1eokA 24 :FKLKDIPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27452 # 1y93A.108.42 read from T0287.t06.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)R115 (1y93A)T154 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKFD 1y93A 147 :LKFSKIN T0287 116 :S 1y93A 155 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=27454 # 1qlmA.108.273 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 108 :FLFSKFDRS 1qlmA 274 :YDFYKIDPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27455 # 1sbxA.108.61 read from T0287.t06.many.frag # found chain 1sbxA in training set Warning: unaligning (T0287)D114 (1sbxA)T154 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1sbxA 148 :IYCSRC T0287 115 :RS 1sbxA 155 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27457 # 1w4sA.108.114 read from T0287.t06.many.frag # found chain 1w4sA in template set T0287 108 :FLFSKFDRS 1w4sA 1044 :LCPENFRDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27458 # 1up8A.108.172 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 108 :FLFSKFDRS 1up8A 172 :IEFSEFDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27459 # 1srvA.108.115 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1srvA 307 :FKLENA T0287 115 :RS 1srvA 314 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27461 # 1pe9A.108.286 read from T0287.t06.many.frag # found chain 1pe9A in training set T0287 108 :FLFSKFDRS 1pe9A 287 :FTIANLSAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27462 # 1pea.108.305 read from T0287.t06.many.frag # found chain 1pea in template set T0287 108 :FLFSKFDRS 1pea 306 :WRVEDVQRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27463 # 1e4cP.108.44 read from T0287.t06.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)D114 (1e4cP)T51 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1e4cP 45 :IPYEKL T0287 115 :RS 1e4cP 52 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=27465 # 1uehA.108.166 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)D114 (1uehA)D173 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1uehA 167 :LQPDQI T0287 115 :RS 1uehA 174 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27467 # 1rqpA.108.172 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1rqpA)R180 because P (beta_P) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1rqpA 173 :FPLSEV T0287 116 :S 1rqpA 181 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27469 # 1yt8A.108.458 read from T0287.t06.many.frag # found chain 1yt8A in template set T0287 108 :FLFSKFDRS 1yt8A 459 :FLLDGGTSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27470 # 2be1A.108.223 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. T0287 108 :FLFSKFDR 2be1A 334 :LLASDLDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27471 # 1n5uA.108.269 read from T0287.t06.many.frag # found chain 1n5uA in template set T0287 108 :FLFSKFDRS 1n5uA 270 :SISSKLKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27472 # 1tt8A.108.103 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1tt8A 104 :LALQKL T0287 115 :RS 1tt8A 111 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27474 # 1odmA.108.169 read from T0287.t06.many.frag # found chain 1odmA in training set T0287 108 :FLFSKFDRS 1odmA 170 :FFARHFKPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27475 # 1bkrA.108.21 read from T0287.t06.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFS 1bkrA 22 :VNIH T0287 113 :FDRS 1bkrA 27 :FTTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27477 # 2b59B.108.155 read from T0287.t06.many.frag # found chain 2b59B in template set Warning: unaligning (T0287)R115 because last residue in template chain is (2b59B)A163 T0287 108 :FLFSKFD 2b59B 156 :ATSSDYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27478 # 1hs6A.108.481 read from T0287.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 108 :FLFSKF 1hs6A 481 :DDLNSF T0287 115 :RS 1hs6A 488 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27480 # 1my7A.108.23 read from T0287.t06.many.frag # found chain 1my7A in training set Warning: unaligning (T0287)D114 (1my7A)Q220 because E (beta_S) conformation "forbidden" or filtered. T0287 108 :FLFSKF 1my7A 214 :LLCDKV T0287 115 :RS 1my7A 221 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27482 # 1u8xX.108.458 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 T0287 108 :FL 1u8xX 436 :DF T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27484 # 1ox0A.109.110 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 109 :LFSK 1ox0A 92 :DVEA T0287 115 :RSI 1ox0A 98 :RDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27486 # 1oygA.109.37 read from T0287.t06.many.frag # found chain 1oygA in training set T0287 109 :LFSKFDRSI 1oygA 64 :QVPEFDSST Number of specific fragments extracted= 1 number of extra gaps= 0 total=27487 # 1zvdA.109.244 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 109 :LFSKFDRSI 1zvdA 613 :LLKTFDEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27488 # 1qw9A.109.14 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 109 :LF 1qw9A 15 :KI T0287 113 :FDRSI 1qw9A 19 :IDKRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27490 # 1yw4A.109.245 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 109 :LFS 1yw4A 246 :NVP T0287 113 :FDRSI 1yw4A 250 :LDEDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27492 # 1pkhA.109.17 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 109 :LFS 1pkhA 18 :IIK T0287 113 :FDRSI 1pkhA 22 :FNKDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27494 # 1tjvA.109.405 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFSKF 1tjvA 406 :TINKL T0287 115 :RSI 1tjvA 412 :LED Number of specific fragments extracted= 2 number of extra gaps= 1 total=27496 # 1t4bA.109.213 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 109 :LFSKF 1t4bA 214 :PVDNF T0287 115 :RSI 1t4bA 220 :VPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27498 # 1srvA.109.116 read from T0287.t06.many.frag # found chain 1srvA in template set T0287 109 :LFSKFDRSI 1srvA 308 :KLENATLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27499 # 1qlmA.109.274 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 109 :LFSKFDRSI 1qlmA 275 :DFYKIDPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27500 # 1eokA.109.24 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 109 :LFSKFDRSI 1eokA 25 :KLKDIPDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27501 # 1e4cP.109.45 read from T0287.t06.many.frag # found chain 1e4cP in training set T0287 109 :LFSKFDRSI 1e4cP 46 :PYEKLTESH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27502 # 1h2wA.109.316 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 109 :LFSKFDRSI 1h2wA 317 :DFTDPEESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27503 # 1sbxA.109.62 read from T0287.t06.many.frag # found chain 1sbxA in training set T0287 109 :LFSKFDRSI 1sbxA 149 :YCSRCTADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27504 # 1w4sA.109.115 read from T0287.t06.many.frag # found chain 1w4sA in template set T0287 109 :LFSKFDRSI 1w4sA 1045 :CPENFRDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=27505 # 1y93A.109.43 read from T0287.t06.many.frag # found chain 1y93A in template set Warning: unaligning (T0287)S116 (1y93A)G155 because S (epsilon) conformation "forbidden" or filtered. T0287 109 :LFSKFDR 1y93A 148 :KFSKINT T0287 117 :I 1y93A 156 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=27507 # 1tt8A.109.104 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)S111 (1tt8A)Q107 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LF 1tt8A 105 :AL T0287 112 :KFDRSI 1tt8A 108 :KLGKTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27509 # 1pe9A.109.287 read from T0287.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)L109 (1pe9A)T288 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 110 :FS 1pe9A 289 :IA T0287 113 :FDRSI 1pe9A 292 :LSASK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27511 # 1uehA.109.167 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)D114 (1uehA)D173 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 1uehA 168 :QPDQI T0287 115 :RSI 1uehA 174 :EEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27513 # 1rqpA.109.173 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1rqpA)R180 because P (beta_P) conformation "forbidden" or filtered. T0287 109 :LFSKF 1rqpA 174 :PLSEV T0287 116 :SI 1rqpA 181 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27515 # 1kg0C.109.54 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L109 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKFDRSI 1kg0C 141 :FYGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27516 # 1g9gA.109.98 read from T0287.t06.many.frag # found chain 1g9gA in template set T0287 109 :LFSKFDRSI 1g9gA 99 :SMSRYDANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27517 # 1up8A.109.173 read from T0287.t06.many.frag # found chain 1up8A in template set T0287 109 :LFSKFDRSI 1up8A 173 :EFSEFDSPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27518 # 1hs6A.109.482 read from T0287.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 1hs6A 482 :DLNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27520 # 1pea.109.306 read from T0287.t06.many.frag # found chain 1pea in template set T0287 109 :LFSKFDRSI 1pea 307 :RVEDVQRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27521 # 1ut7A.109.52 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)L109 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D50 Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RSI 1ut7A 56 :PWV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27523 # 1qxmA.109.188 read from T0287.t06.many.frag # found chain 1qxmA in training set T0287 109 :LFSKFDRSI 1qxmA 175 :LWQWFDSSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27524 # 2a3nA.109.260 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 109 :LFSKF 2a3nA 249 :ALELL T0287 115 :RSI 2a3nA 255 :KDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27526 # 1bkrA.109.22 read from T0287.t06.many.frag # found chain 1bkrA in training set Warning: unaligning (T0287)K112 (1bkrA)N26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 (1bkrA)F27 because G (3-10) conformation "forbidden" or filtered. T0287 109 :LFS 1bkrA 23 :NIH T0287 114 :DRSI 1bkrA 28 :TTSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27528 # 1u8xX.109.459 read from T0287.t06.many.frag # found chain 1u8xX in template set Warning: unaligning (T0287)F110 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)P439 Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)P439 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE in next template residue (1u8xX)Q443 Warning: unaligning (T0287)R115 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)Q443 Warning: unaligning (T0287)S116 because of BadResidue code BAD_PEPTIDE at template residue (1u8xX)S444 Warning: unaligning (T0287)I117 because last residue in template chain is (1u8xX)P445 T0287 109 :L 1u8xX 437 :F T0287 112 :KF 1u8xX 440 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27530 # 1ox0A.110.111 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)K112 (1ox0A)A95 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 110 :FS 1ox0A 93 :VE T0287 115 :RSIL 1ox0A 98 :RDRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27532 # 1oygA.110.38 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)I117 (1oygA)T72 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDRS 1oygA 65 :VPEFDSS T0287 118 :L 1oygA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27534 # 1qw9A.110.15 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 110 :F 1qw9A 16 :I T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27536 # 1zvdA.110.245 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 110 :FSKFDRSIL 1zvdA 614 :LKTFDEKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27537 # 1yw4A.110.246 read from T0287.t06.many.frag # found chain 1yw4A in template set T0287 110 :FSKFDRSIL 1yw4A 247 :VPDLDEDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27538 # 1t4bA.110.214 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F113 (1t4bA)F218 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1t4bA 215 :VDN T0287 114 :DRSIL 1t4bA 219 :GVPLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27540 # 1srvA.110.117 read from T0287.t06.many.frag # found chain 1srvA in template set T0287 110 :FSKFDRSIL 1srvA 309 :LENATLSML Number of specific fragments extracted= 1 number of extra gaps= 0 total=27541 # 1h2wA.110.317 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)S111 (1h2wA)T319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1h2wA)E322 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :F 1h2wA 318 :F T0287 112 :KF 1h2wA 320 :DP T0287 115 :RSIL 1h2wA 323 :ESKW Number of specific fragments extracted= 3 number of extra gaps= 2 total=27544 # 1pkhA.110.18 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. T0287 110 :FS 1pkhA 19 :IK T0287 113 :FDRSIL 1pkhA 22 :FNKDFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27546 # 1tt8A.110.105 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. T0287 110 :FSKF 1tt8A 106 :LQKL T0287 115 :RSIL 1tt8A 111 :KTPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27548 # 1qlmA.110.275 read from T0287.t06.many.frag # found chain 1qlmA in template set T0287 110 :FSKFDRSIL 1qlmA 276 :FYKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27549 # 1tjvA.110.406 read from T0287.t06.many.frag # found chain 1tjvA in template set Warning: unaligning (T0287)D114 (1tjvA)S411 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKF 1tjvA 407 :INKL T0287 115 :RSIL 1tjvA 412 :LEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27551 # 1w4sA.110.116 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)D114 (1w4sA)R1050 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKF 1w4sA 1046 :PENF T0287 115 :RSIL 1w4sA 1051 :DEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27553 # 1e4cP.110.46 read from T0287.t06.many.frag # found chain 1e4cP in training set T0287 110 :FSKFDRSIL 1e4cP 47 :YEKLTESHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27554 # 1kg0C.110.55 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 T0287 110 :FSKFDRSI 1kg0C 141 :FYGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27555 # 1eokA.110.25 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)K112 (1eokA)D28 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FS 1eokA 26 :LK T0287 113 :FDRSIL 1eokA 29 :IPDKVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27557 # 1xruA.110.41 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. T0287 110 :FSKF 1xruA 39 :YSHI T0287 115 :RSIL 1xruA 44 :RIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27559 # 1pea.110.307 read from T0287.t06.many.frag # found chain 1pea in template set T0287 110 :FSKFDRSIL 1pea 308 :VEDVQRHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27560 # 1qxmA.110.189 read from T0287.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)F113 (1qxmA)F179 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1qxmA 176 :WQW T0287 114 :DRSIL 1qxmA 180 :DSSRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27562 # 1l8bA.110.114 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 110 :FSKFDRSIL 1l8bA 142 :FDDYSDDVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27563 # 1rqpA.110.174 read from T0287.t06.many.frag # found chain 1rqpA in training set Warning: unaligning (T0287)D114 (1rqpA)G179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1rqpA)R180 because P (beta_P) conformation "forbidden" or filtered. T0287 110 :FSKF 1rqpA 175 :LSEV T0287 116 :SIL 1rqpA 181 :PLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27565 # 1ut7A.110.53 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 Warning: unaligning (T0287)I117 (1ut7A)V58 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSK 1ut7A 51 :LYK T0287 115 :RS 1ut7A 56 :PW T0287 118 :L 1ut7A 59 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27568 # 1g4mA.110.306 read from T0287.t06.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 110 :FS 1g4mA 307 :RE T0287 113 :FDRSIL 1g4mA 310 :ANREIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27570 # 1vefA.110.361 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)S116 (1vefA)T368 because G (3-10) conformation "forbidden" or filtered. T0287 110 :FSKFDR 1vefA 362 :ALQAGP T0287 117 :IL 1vefA 369 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27572 # 1sbxA.110.63 read from T0287.t06.many.frag # found chain 1sbxA in training set T0287 110 :FSKFDRSIL 1sbxA 150 :CSRCTADQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27573 # 1hs6A.110.483 read from T0287.t06.many.frag # found chain 1hs6A in template set Warning: unaligning (T0287)D114 (1hs6A)N487 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)K492 T0287 110 :FSKF 1hs6A 483 :LNSF T0287 115 :RSI 1hs6A 488 :ATD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27575 # 1uehA.110.168 read from T0287.t06.many.frag # found chain 1uehA in training set Warning: unaligning (T0287)D114 (1uehA)D173 because Y (epsilon') conformation "forbidden" or filtered. T0287 110 :FSKF 1uehA 169 :PDQI T0287 115 :RSIL 1uehA 174 :EEML Number of specific fragments extracted= 2 number of extra gaps= 1 total=27577 # 1w23A.110.322 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)F110 (1w23A)G323 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 (1w23A)V330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKFDRS 1w23A 324 :LNGHRS Number of specific fragments extracted= 1 number of extra gaps= 2 total=27578 # 1g9gA.110.99 read from T0287.t06.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)D114 (1g9gA)D104 because D (zeta) conformation "forbidden" or filtered. T0287 110 :FSKF 1g9gA 100 :MSRY T0287 115 :RSIL 1g9gA 105 :ANKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27580 # 1nkr.110.66 read from T0287.t06.many.frag # found chain 1nkr in training set T0287 110 :FSKFDRSIL 1nkr 66 :ISRMTQDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27581 # 1ox0A.111.112 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 111 :SK 1ox0A 94 :EA T0287 115 :RSILG 1ox0A 98 :RDRFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27583 # 1qw9A.111.16 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)S111 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)E18 Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27584 # 1oygA.111.39 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 T0287 111 :SKFDRSIL 1oygA 66 :PEFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27585 # 1yw4A.111.247 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)K112 (1yw4A)D249 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :S 1yw4A 248 :P T0287 113 :FDRSILG 1yw4A 250 :LDEDKLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27587 # 1zvdA.111.246 read from T0287.t06.many.frag # found chain 1zvdA in template set T0287 111 :SKFDRSILG 1zvdA 615 :KTFDEKELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27588 # 1h2wA.111.318 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 111 :SKFDRSILG 1h2wA 319 :TDPEESKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27589 # 1t4bA.111.215 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :SKF 1t4bA 216 :DNF T0287 115 :RSILG 1t4bA 220 :VPLAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27591 # 1srvA.111.118 read from T0287.t06.many.frag # found chain 1srvA in template set T0287 111 :SKFDRSILG 1srvA 310 :ENATLSMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27592 # 1tt8A.111.106 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)S111 (1tt8A)Q107 because G (3-10) conformation "forbidden" or filtered. T0287 112 :KFDRSILG 1tt8A 108 :KLGKTPLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27593 # 1xruA.111.42 read from T0287.t06.many.frag # found chain 1xruA in template set T0287 111 :SKFDRSILG 1xruA 40 :SHIDRIIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27594 # 1g4mA.111.307 read from T0287.t06.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. T0287 111 :S 1g4mA 308 :E T0287 113 :FDRSILG 1g4mA 310 :ANREILG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27596 # 1w4sA.111.117 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)K112 (1w4sA)N1048 because T (delta_L) conformation "forbidden" or filtered. T0287 111 :S 1w4sA 1047 :E T0287 113 :FDRSILG 1w4sA 1049 :FRDEDVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27598 # 1kg0C.111.56 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 111 :SKFDRSI 1kg0C 142 :YGPTPDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27599 # 1vefA.111.362 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)S116 (1vefA)T368 because G (3-10) conformation "forbidden" or filtered. T0287 111 :SKFDR 1vefA 363 :LQAGP T0287 117 :ILG 1vefA 369 :VIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27601 # 1l8bA.111.115 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 111 :SKFDRSILG 1l8bA 143 :DDYSDDVCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27602 # 1qxmA.111.190 read from T0287.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)S111 (1qxmA)Q177 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1qxmA 178 :WF T0287 115 :RSILG 1qxmA 181 :SSRQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27604 # 1ut7A.111.54 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 111 :SK 1ut7A 52 :YK T0287 115 :RSILG 1ut7A 56 :PWVLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27606 # 1tjvA.111.407 read from T0287.t06.many.frag # found chain 1tjvA in template set T0287 111 :SKFDRSILG 1tjvA 408 :NKLSLEDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27607 # 1w23A.111.323 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)G119 (1w23A)G332 because S (epsilon) conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1w23A 324 :LNGHRSVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27608 # 1pkhA.111.19 read from T0287.t06.many.frag # found chain 1pkhA in training set Warning: unaligning (T0287)K112 (1pkhA)P21 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1pkhA)G28 because P (beta_P) conformation "forbidden" or filtered. T0287 111 :S 1pkhA 20 :K T0287 113 :FDRSIL 1pkhA 22 :FNKDFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27610 # 1qlmA.111.276 read from T0287.t06.many.frag # found chain 1qlmA in template set Warning: unaligning (T0287)G119 (1qlmA)A285 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKFDRSIL 1qlmA 277 :YKIDPGVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27611 # 1e4cP.111.47 read from T0287.t06.many.frag # found chain 1e4cP in training set Warning: unaligning (T0287)D114 (1e4cP)T51 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKF 1e4cP 48 :EKL T0287 115 :RSILG 1e4cP 52 :ESHIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27613 # 1nkr.111.67 read from T0287.t06.many.frag # found chain 1nkr in training set T0287 111 :SKFDRSILG 1nkr 67 :SRMTQDLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27614 # 2a3nA.111.262 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 111 :SKF 2a3nA 251 :ELL T0287 115 :RSILG 2a3nA 255 :KDVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27616 # 1g9gA.111.100 read from T0287.t06.many.frag # found chain 1g9gA in template set T0287 111 :SKFDRSILG 1g9gA 101 :SRYDANKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27617 # 1eokA.111.26 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)S116 (1eokA)K32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1eokA)M35 because E (beta_S) conformation "forbidden" or filtered. T0287 111 :SKFDR 1eokA 27 :KDIPD T0287 117 :IL 1eokA 33 :VD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27619 # 1ogoX.111.139 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 111 :SKFDRSILG 1ogoX 140 :SQSDDGGIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27620 # 1ig0A.111.178 read from T0287.t06.many.frag # found chain 1ig0A in training set T0287 111 :SKFDRSILG 1ig0A 179 :SKVTPISLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27621 # 1pe9A.111.289 read from T0287.t06.many.frag # found chain 1pe9A in training set Warning: unaligning (T0287)K112 (1pe9A)N291 because L (left) conformation "forbidden" or filtered. T0287 111 :S 1pe9A 290 :A T0287 113 :FDRSILG 1pe9A 292 :LSASKAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27623 # 1pea.111.308 read from T0287.t06.many.frag # found chain 1pea in template set T0287 111 :SKFDRSILG 1pea 309 :EDVQRHLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27624 # 1ox0A.112.113 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 112 :K 1ox0A 95 :A T0287 115 :RSILGI 1ox0A 98 :RDRFGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27626 # 1qw9A.112.17 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)K112 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)E18 Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 T0287 113 :FDRSIL 1qw9A 19 :IDKRIY Number of specific fragments extracted= 1 number of extra gaps= 2 total=27627 # 1yw4A.112.248 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1yw4A 249 :DLDEDKL T0287 120 :I 1yw4A 257 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27629 # 1h2wA.112.319 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 112 :KFDRSILGI 1h2wA 320 :DPEESKWKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27630 # 1zvdA.112.247 read from T0287.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KF 1zvdA 616 :TF T0287 115 :RSILGI 1zvdA 619 :EKELEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27632 # 1xruA.112.43 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1xruA 41 :HIDRIIV T0287 120 :I 1xruA 49 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=27634 # 1oygA.112.40 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)N75 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)N75 T0287 112 :KFDRSIL 1oygA 67 :EFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27635 # 1t4bA.112.216 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)F113 (1t4bA)F218 because G (3-10) conformation "forbidden" or filtered. T0287 112 :K 1t4bA 217 :N T0287 114 :DRSILGI 1t4bA 219 :GVPLAGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27637 # 1g4mA.112.308 read from T0287.t06.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)K112 (1g4mA)G309 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1g4mA)N311 because N (gamma') conformation "forbidden" or filtered. T0287 113 :F 1g4mA 310 :A T0287 115 :RSILGI 1g4mA 312 :REILGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27639 # 1vefA.112.363 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1vefA 364 :QAGPTVI T0287 120 :I 1vefA 372 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=27641 # 1srvA.112.119 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1srvA)G318 because P (beta_P) conformation "forbidden" or filtered. T0287 112 :KF 1srvA 311 :NA T0287 115 :RSIL 1srvA 314 :LSML T0287 120 :I 1srvA 319 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=27644 # 1tt8A.112.107 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)D114 (1tt8A)G110 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1tt8A)K111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1tt8A)G115 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KF 1tt8A 108 :KL T0287 116 :SIL 1tt8A 112 :TPL T0287 120 :I 1tt8A 116 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=27647 # 1l8bA.112.116 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 112 :KFDRSILGI 1l8bA 144 :DYSDDVCGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27648 # 3cla.112.132 read from T0287.t06.many.frag # found chain 3cla in training set T0287 112 :KFDRSILGI 3cla 139 :VTPENHLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27649 # 1qxmA.112.191 read from T0287.t06.many.frag # found chain 1qxmA in training set Warning: unaligning (T0287)D114 (1qxmA)D180 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1qxmA 178 :WF T0287 115 :RSILGI 1qxmA 181 :SSRQKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27651 # 1chd.112.123 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)F113 (1chd)A271 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :K 1chd 270 :H T0287 115 :RSILGI 1chd 273 :RNAVGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27653 # 1ogoX.112.140 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. T0287 112 :KFDR 1ogoX 141 :QSDD T0287 117 :ILGI 1ogoX 146 :GIVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27655 # 1kg0C.112.57 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 112 :KFDRSI 1kg0C 143 :GPTPDI T0287 120 :I 1kg0C 151 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27657 # 1w4sA.112.118 read from T0287.t06.many.frag # found chain 1w4sA in template set Warning: unaligning (T0287)G119 (1w4sA)Y1055 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1w4sA 1048 :NFRDEDV T0287 120 :I 1w4sA 1056 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27659 # 2fckA.112.128 read from T0287.t06.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 112 :KFDRSIL 2fckA 126 :RLELTRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27660 # 1w23A.112.324 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)D114 (1w23A)H327 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 (1w23A)G331 because S (epsilon) conformation "forbidden" or filtered. T0287 112 :KF 1w23A 325 :NG T0287 115 :RSI 1w23A 328 :RSV T0287 119 :GI 1w23A 332 :GC Number of specific fragments extracted= 3 number of extra gaps= 2 total=27663 # 2a3nA.112.263 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)G119 (2a3nA)L259 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 2a3nA 252 :LLEKDVP T0287 120 :I 2a3nA 260 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27665 # 1qs1A.112.198 read from T0287.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 112 :KFDRSIL 1qs1A 199 :SKERVIL T0287 120 :I 1qs1A 207 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27667 # 2be1A.112.227 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)K112 (2be1A)D338 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 113 :FDR 2be1A 339 :LDF Number of specific fragments extracted= 1 number of extra gaps= 2 total=27668 # 1wl8A.112.69 read from T0287.t06.many.frag # found chain 1wl8A in template set Warning: unaligning (T0287)D114 (1wl8A)N72 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 1wl8A 70 :EF T0287 115 :RSILGI 1wl8A 73 :VPILGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27670 # 1ut7A.112.55 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)D55 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)D55 T0287 112 :K 1ut7A 53 :K T0287 115 :RSILGI 1ut7A 56 :PWVLPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27672 # 1nkr.112.68 read from T0287.t06.many.frag # found chain 1nkr in training set T0287 112 :KFDRSILGI 1nkr 68 :RMTQDLAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27673 # 1wd3A.112.26 read from T0287.t06.many.frag # found chain 1wd3A in training set Warning: unaligning (T0287)L118 (1wd3A)Y50 because Y (epsilon') conformation "forbidden" or filtered. T0287 112 :KFDRSI 1wd3A 44 :SFSGAL T0287 119 :GI 1wd3A 51 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27675 # 1as4B.112.7 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 112 :KFDR 1as4B 365 :RFNR T0287 117 :IL 1as4B 370 :FL T0287 120 :I 1as4B 373 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=27678 # 2bw3A.112.110 read from T0287.t06.many.frag # found chain 2bw3A in template set Warning: unaligning (T0287)D114 (2bw3A)K188 because L (left) conformation "forbidden" or filtered. T0287 112 :KF 2bw3A 186 :YI T0287 115 :RSILGI 2bw3A 189 :RNFLGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27680 # 1ox0A.113.114 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)F113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ox0A)N97 Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 115 :RSILGIF 1ox0A 98 :RDRFGVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27681 # 1qw9A.113.18 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 113 :FDRSILG 1qw9A 19 :IDKRIYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27682 # 1yw4A.113.249 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)I117 (1yw4A)K254 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRS 1yw4A 250 :LDED T0287 118 :LGIF 1yw4A 255 :LPLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27684 # 1h2wA.113.320 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)I117 (1h2wA)K325 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRS 1h2wA 321 :PEES T0287 118 :L 1h2wA 326 :W T0287 120 :IF 1h2wA 328 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27687 # 3cla.113.133 read from T0287.t06.many.frag # found chain 3cla in training set T0287 113 :FDRSILGIF 3cla 140 :TPENHLNIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27688 # 1seiA.113.53 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. T0287 113 :F 1seiA 54 :N T0287 115 :RSILGIF 1seiA 56 :QGILRIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27690 # 1ogoX.113.141 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 113 :FDRSILGIF 1ogoX 142 :SDDGGIVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27691 # 1chd.113.124 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)D114 (1chd)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1chd)R273 because G (3-10) conformation "forbidden" or filtered. T0287 113 :F 1chd 271 :A T0287 116 :SILGIF 1chd 274 :NAVGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27693 # 1g4mA.113.309 read from T0287.t06.many.frag # found chain 1g4mA in template set T0287 113 :FDRSILGIF 1g4mA 310 :ANREILGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=27694 # 1vefA.113.364 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. T0287 113 :F 1vefA 365 :A T0287 115 :RSILGIF 1vefA 367 :PTVIRFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27696 # 1xruA.113.44 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)D114 (1xruA)D43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)R115 (1xruA)R44 because L (left) conformation "forbidden" or filtered. T0287 113 :F 1xruA 42 :I T0287 116 :SILGIF 1xruA 45 :IIVGGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27698 # 1qxmA.113.192 read from T0287.t06.many.frag # found chain 1qxmA in training set T0287 113 :FDRSILGIF 1qxmA 179 :FDSSRQKWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27699 # 1l8bA.113.117 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 113 :FDRSILGIF 1l8bA 145 :YSDDVCGAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27700 # 1srvA.113.120 read from T0287.t06.many.frag # found chain 1srvA in template set Warning: unaligning (T0287)D114 (1srvA)T313 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1srvA)G318 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :F 1srvA 312 :A T0287 115 :RSIL 1srvA 314 :LSML T0287 120 :IF 1srvA 319 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27703 # 1t4bA.113.217 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 113 :F 1t4bA 218 :F T0287 115 :RSILGIF 1t4bA 220 :VPLAGSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27705 # 1crzA.113.225 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :FD 1crzA 232 :PD T0287 116 :SILG 1crzA 235 :SKLA T0287 121 :F 1crzA 240 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=27708 # 2fckA.113.129 read from T0287.t06.many.frag # found chain 2fckA in template set Warning: unaligning (T0287)D114 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2fckA)I134 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2fckA)I134 T0287 113 :F 2fckA 127 :L T0287 115 :RSIL 2fckA 129 :LTRL T0287 121 :F 2fckA 135 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=27711 # 1kg0C.113.58 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)D114 (1kg0C)T145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 113 :F 1kg0C 144 :P T0287 115 :RSI 1kg0C 146 :PDI T0287 120 :IF 1kg0C 151 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=27714 # 1tt8A.113.108 read from T0287.t06.many.frag # found chain 1tt8A in training set Warning: unaligning (T0287)S116 (1tt8A)T112 because P (beta_P) conformation "forbidden" or filtered. T0287 113 :FDR 1tt8A 109 :LGK T0287 117 :ILGIF 1tt8A 113 :PLGRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27716 # 2a3nA.113.264 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 113 :F 2a3nA 253 :L T0287 115 :RSILGIF 2a3nA 255 :KDVPLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27718 # 1zvdA.113.248 read from T0287.t06.many.frag # found chain 1zvdA in template set Warning: unaligning (T0287)D114 (1zvdA)D618 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :F 1zvdA 617 :F T0287 115 :RSILGIF 1zvdA 619 :EKELELI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27720 # 1as4B.113.8 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)G119 (1as4B)M372 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1as4B 366 :FNRPFL T0287 120 :IF 1as4B 373 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=27722 # 1w23A.113.325 read from T0287.t06.many.frag # found chain 1w23A in training set Warning: unaligning (T0287)I117 (1w23A)V330 because G (3-10) conformation "forbidden" or filtered. T0287 113 :FDRS 1w23A 326 :GHRS T0287 118 :LGIF 1w23A 331 :GGCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27724 # 2be1A.113.228 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 113 :FDRS 2be1A 339 :LDFR T0287 121 :F 2be1A 347 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27726 # 1u7iA.113.46 read from T0287.t06.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1u7iA)K51 because E (beta_S) conformation "forbidden" or filtered. T0287 113 :FD 1u7iA 45 :PE T0287 116 :SIL 1u7iA 48 :SVL T0287 120 :IF 1u7iA 52 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27729 # 1qs1A.113.199 read from T0287.t06.many.frag # found chain 1qs1A in training set Warning: unaligning (T0287)G119 (1qs1A)K206 because D (zeta) conformation "forbidden" or filtered. T0287 113 :FDRSIL 1qs1A 200 :KERVIL T0287 120 :IF 1qs1A 207 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27731 # 1n7zA.113.80 read from T0287.t06.many.frag # found chain 1n7zA in template set T0287 113 :FDRSILGIF 1n7zA 81 :VLPSMLDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27732 # 1w4sA.113.119 read from T0287.t06.many.frag # found chain 1w4sA in template set T0287 113 :FDRSILGIF 1w4sA 1049 :FRDEDVYVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27733 # 1lm8V.113.26 read from T0287.t06.many.frag # found chain 1lm8V in template set T0287 113 :FDRSILGIF 1lm8V 80 :SPRVVLPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27734 # 1w66A.113.127 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)F113 because of BadResidue code BAD_PEPTIDE in next template residue (1w66A)V127 Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 115 :RSIL 1w66A 128 :DGRS T0287 120 :IF 1w66A 133 :VW Number of specific fragments extracted= 2 number of extra gaps= 2 total=27736 # 1h2wA.114.321 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 1h2wA 322 :EESKW T0287 120 :IFL 1h2wA 328 :VLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27738 # 1ox0A.114.115 read from T0287.t06.many.frag # found chain 1ox0A in training set Warning: unaligning (T0287)D114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ox0A)N97 T0287 115 :RSILGIFL 1ox0A 98 :RDRFGVIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27739 # 1qw9A.114.19 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 T0287 114 :DRSILG 1qw9A 20 :DKRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27741 # 1seiA.114.54 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)D114 (1seiA)K55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1seiA 56 :QGIL T0287 120 :IFL 1seiA 61 :IFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27743 # 1w66A.114.128 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)D114 because of BadResidue code BAD_PEPTIDE at template residue (1w66A)V127 Warning: unaligning (T0287)R115 (1w66A)D128 because P (beta_P) conformation "forbidden" or filtered. T0287 116 :SILGIFL 1w66A 129 :GRSGVWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27744 # 1ogoX.114.142 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 114 :DRSILGIFL 1ogoX 143 :DDGGIVIRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27745 # 3cla.114.134 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DRSIL 3cla 141 :PENHL T0287 120 :IFL 3cla 147 :ISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27747 # 1yw4A.114.250 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)I117 (1yw4A)K254 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1yw4A)P256 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DRS 1yw4A 251 :DED T0287 118 :L 1yw4A 255 :L T0287 120 :IFL 1yw4A 257 :LFR Number of specific fragments extracted= 3 number of extra gaps= 2 total=27750 # 1chd.114.125 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S116 (1chd)N274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1chd)G277 because E (beta_S) conformation "forbidden" or filtered. T0287 114 :DR 1chd 272 :GR T0287 117 :IL 1chd 275 :AV T0287 120 :IFL 1chd 278 :VIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27753 # 1crzA.114.226 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)R115 (1crzA)G234 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1crzA 233 :D T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27755 # 1g4mA.114.310 read from T0287.t06.many.frag # found chain 1g4mA in template set T0287 114 :DRSILGIFL 1g4mA 311 :NREILGIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27756 # 1l8bA.114.118 read from T0287.t06.many.frag # found chain 1l8bA in training set T0287 114 :DRSILGIFL 1l8bA 146 :SDDVCGAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27757 # 1t4bA.114.218 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)D114 (1t4bA)G219 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1t4bA 220 :VPLAGSLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27758 # 1xruA.114.45 read from T0287.t06.many.frag # found chain 1xruA in template set T0287 114 :DRSILGIFL 1xruA 43 :DRIIVGGIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27759 # 1vefA.114.365 read from T0287.t06.many.frag # found chain 1vefA in template set Warning: unaligning (T0287)D114 (1vefA)G366 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (1vefA)T368 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1vefA)R371 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :R 1vefA 367 :P T0287 117 :IL 1vefA 369 :VI T0287 120 :IFL 1vefA 372 :FLP Number of specific fragments extracted= 3 number of extra gaps= 3 total=27762 # 1wurA.114.80 read from T0287.t06.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 114 :DRSI 1wurA 81 :EEVV T0287 119 :GIFL 1wurA 86 :GAVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27764 # 1qxmA.114.193 read from T0287.t06.many.frag # found chain 1qxmA in training set T0287 114 :DRSILGIFL 1qxmA 180 :DSSRQKWII Number of specific fragments extracted= 1 number of extra gaps= 0 total=27765 # 2be1A.114.129 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 T0287 114 :DRSILGIF 2be1A 240 :NGEIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27766 # 1kg0C.114.59 read from T0287.t06.many.frag # found chain 1kg0C in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE in next template residue (1kg0C)P150 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE at template residue (1kg0C)P150 T0287 114 :DRSI 1kg0C 145 :TPDI T0287 120 :IFL 1kg0C 151 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27768 # 2asbA.114.22 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)R115 (2asbA)R128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S116 (2asbA)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 2asbA 127 :A T0287 117 :ILGIFL 2asbA 130 :LVVVRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27770 # 1u7iA.114.47 read from T0287.t06.many.frag # found chain 1u7iA in training set Warning: unaligning (T0287)R115 (1u7iA)G47 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :D 1u7iA 46 :E T0287 116 :SILGIFL 1u7iA 48 :SVLKALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27772 # 1as4B.114.9 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)I117 (1as4B)F370 because Y (epsilon') conformation "forbidden" or filtered. T0287 114 :DRS 1as4B 367 :NRP T0287 118 :LGIFL 1as4B 371 :LMIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27774 # 1oewA.114.243 read from T0287.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L118 (1oewA)G248 because T (delta_L) conformation "forbidden" or filtered. T0287 114 :DRSI 1oewA 244 :SSSV T0287 119 :GIFL 1oewA 249 :GYVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27776 # 1w23A.114.326 read from T0287.t06.many.frag # found chain 1w23A in training set T0287 114 :DRSILGIFL 1w23A 327 :HRSVGGCRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27777 # 2a3nA.114.265 read from T0287.t06.many.frag # found chain 2a3nA in template set Warning: unaligning (T0287)D114 (2a3nA)E254 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSILGIFL 2a3nA 255 :KDVPLILV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27778 # 2be1A.114.229 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 114 :DR 2be1A 340 :DF T0287 121 :FL 2be1A 347 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27780 # 1lm8V.114.27 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 114 :DRSIL 1lm8V 81 :PRVVL T0287 120 :IFL 1lm8V 87 :VWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27782 # 2f6kA.114.114 read from T0287.t06.many.frag # found chain 2f6kA in template set T0287 114 :DRSILGIFL 2f6kA 115 :QDGALGVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27783 # 1my7A.114.29 read from T0287.t06.many.frag # found chain 1my7A in training set T0287 114 :DRSILGIFL 1my7A 220 :QKEDIEVYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27784 # 1n7zA.114.81 read from T0287.t06.many.frag # found chain 1n7zA in template set T0287 114 :DRSILGIFL 1n7zA 82 :LPSMLDAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27785 # 1h2wA.115.322 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1h2wA 323 :ESKW T0287 120 :IFLP 1h2wA 328 :VLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27787 # 1w66A.115.129 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 115 :R 1w66A 128 :D T0287 117 :ILGIFLP 1w66A 130 :RSGVWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27789 # 1qw9A.115.20 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 T0287 115 :RSILG 1qw9A 21 :KRIYG T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=27791 # 1seiA.115.55 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 1seiA 56 :QGILRIFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27792 # 1ogoX.115.143 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1ogoX 144 :DGGI T0287 120 :IFLP 1ogoX 149 :IRVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27794 # 3cla.115.135 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 115 :RSILGIFL 3cla 142 :ENHLNISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27795 # 1t4bA.115.219 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 115 :RSILGIFLP 1t4bA 220 :VPLAGSLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27796 # 1crzA.115.227 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 T0287 115 :RSIL 1crzA 234 :GSKL T0287 120 :IFL 1crzA 239 :FAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27798 # 1ox0A.115.116 read from T0287.t06.many.frag # found chain 1ox0A in training set T0287 115 :RSILGIFLP 1ox0A 98 :RDRFGVIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27799 # 1oewA.115.244 read from T0287.t06.many.frag # found chain 1oewA in training set T0287 115 :RSILGIFLP 1oewA 245 :SSVGGYVFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27800 # 1wurA.115.81 read from T0287.t06.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 115 :RSI 1wurA 82 :EVV T0287 119 :GIFLP 1wurA 86 :GAVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27802 # 1chd.115.126 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)R115 (1chd)R273 because G (3-10) conformation "forbidden" or filtered. T0287 116 :SILGIFLP 1chd 274 :NAVGVILT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27803 # 1t1uA.115.165 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)R115 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)R167 Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLP 1t1uA 170 :SSYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27804 # 2be1A.115.130 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 T0287 115 :RSILGIF 2be1A 241 :GEIISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27805 # 1g4mA.115.311 read from T0287.t06.many.frag # found chain 1g4mA in template set Warning: unaligning (T0287)I117 (1g4mA)I314 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1g4mA)S320 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RS 1g4mA 312 :RE T0287 118 :LGIFL 1g4mA 315 :LGIIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27807 # 1yw4A.115.251 read from T0287.t06.many.frag # found chain 1yw4A in template set Warning: unaligning (T0287)I117 (1yw4A)K254 because G (3-10) conformation "forbidden" or filtered. T0287 115 :RS 1yw4A 252 :ED T0287 118 :LGIFLP 1yw4A 255 :LPLFRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27809 # 2asbA.115.23 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)R115 (2asbA)R128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SILGIF 2asbA 129 :GLVVVR Number of specific fragments extracted= 1 number of extra gaps= 2 total=27810 # 1as4B.115.10 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)S116 (1as4B)P369 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :R 1as4B 368 :R T0287 117 :ILGIFLP 1as4B 370 :FLMIIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27812 # 1jo0A.115.78 read from T0287.t06.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)R115 (1jo0A)G80 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1jo0A 81 :HIL T0287 120 :IFLP 1jo0A 85 :LYRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=27814 # 1wdaA.115.582 read from T0287.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)R115 (1wdaA)F576 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :P 1wdaA 584 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=27816 # 1l8bA.115.119 read from T0287.t06.many.frag # found chain 1l8bA in training set Warning: unaligning (T0287)G119 (1l8bA)G151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1l8bA)N155 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RSIL 1l8bA 147 :DDVC T0287 120 :IFL 1l8bA 152 :AVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27818 # 1l1dA.115.43 read from T0287.t06.many.frag # found chain 1l1dA in template set Warning: unaligning (T0287)G119 (1l1dA)G418 because Y (epsilon') conformation "forbidden" or filtered. T0287 115 :RSIL 1l1dA 414 :LFKP T0287 120 :IFLP 1l1dA 419 :IYVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27820 # 1kaeA.115.123 read from T0287.t06.many.frag # found chain 1kaeA in training set T0287 115 :RSILGIFLP 1kaeA 124 :VASVGLYIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27821 # 1xruA.115.46 read from T0287.t06.many.frag # found chain 1xruA in template set T0287 115 :RSILGIFLP 1xruA 44 :RIIVGGIMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27822 # 1t61A.115.157 read from T0287.t06.many.frag # found chain 1t61A in training set T0287 115 :RSILGIFLP 1t61A 158 :LASPGSCLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27823 # 2bzvA.115.66 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)I117 (2bzvA)A283 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (2bzvA)S285 because E (beta_S) conformation "forbidden" or filtered. T0287 115 :RS 2bzvA 281 :DN T0287 118 :L 2bzvA 284 :L T0287 120 :IFLP 2bzvA 286 :LKLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27826 # 1lm8V.115.28 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 115 :RSIL 1lm8V 82 :RVVL T0287 120 :IFLP 1lm8V 87 :VWLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27828 # 2be1A.115.230 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 115 :R 2be1A 341 :F T0287 121 :FLP 2be1A 347 :VSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27830 # 1vefA.115.366 read from T0287.t06.many.frag # found chain 1vefA in template set T0287 115 :RSILGIFLP 1vefA 367 :PTVIRFLPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27831 # 2f6kA.115.115 read from T0287.t06.many.frag # found chain 2f6kA in template set Warning: unaligning (T0287)S116 (2f6kA)G117 because L (left) conformation "forbidden" or filtered. T0287 115 :R 2f6kA 116 :D T0287 117 :ILGIFLP 2f6kA 118 :ALGVTVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27833 # 1h2wA.116.323 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1h2wA 324 :SKW T0287 120 :IFLPF 1h2wA 328 :VLVPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27835 # 1w66A.116.130 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S116 (1w66A)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 117 :IL 1w66A 130 :RS T0287 120 :IFLPF 1w66A 133 :VWLPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27837 # 1seiA.116.56 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 116 :SIL 1seiA 57 :GIL T0287 120 :IFL 1seiA 61 :IFL T0287 124 :F 1seiA 65 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=27840 # 1qw9A.116.21 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)G119 (1qw9A)G25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 116 :SIL 1qw9A 22 :RIY T0287 122 :L 1qw9A 28 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=27842 # 1ogoX.116.144 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)S116 (1ogoX)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1ogoX)V151 because D (zeta) conformation "forbidden" or filtered. T0287 117 :ILGIF 1ogoX 146 :GIVIR T0287 123 :PF 1ogoX 152 :PA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27844 # 1t4bA.116.220 read from T0287.t06.many.frag # found chain 1t4bA in training set Warning: unaligning (T0287)I120 (1t4bA)S225 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SILG 1t4bA 221 :PLAG T0287 121 :FLPF 1t4bA 226 :LIPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27846 # 1wurA.116.82 read from T0287.t06.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 116 :SI 1wurA 83 :VV T0287 119 :GIFLPF 1wurA 86 :GAVFPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27848 # 3cla.116.136 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)G119 (3cla)N146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 116 :SIL 3cla 143 :NHL T0287 120 :IFL 3cla 147 :ISA T0287 124 :F 3cla 151 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=27851 # 1t1uA.116.166 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S116 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)F169 Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 T0287 118 :LGIFLPF 1t1uA 170 :SSYRLPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27852 # 1crzA.116.228 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 T0287 116 :SILGIFL 1crzA 235 :SKLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27853 # 1as4B.116.11 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)I117 (1as4B)F370 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :S 1as4B 369 :P T0287 118 :LGIFLPF 1as4B 371 :LMIIVPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27855 # 1chd.116.127 read from T0287.t06.many.frag # found chain 1chd in training set T0287 116 :SILGIFLPF 1chd 274 :NAVGVILTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27856 # 1oewA.116.245 read from T0287.t06.many.frag # found chain 1oewA in training set T0287 116 :SILGIFLPF 1oewA 246 :SVGGYVFPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27857 # 1kaeA.116.124 read from T0287.t06.many.frag # found chain 1kaeA in training set T0287 116 :SILGIFLPF 1kaeA 125 :ASVGLYIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27858 # 2be1A.116.131 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)G119 (2be1A)S245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 T0287 116 :SIL 2be1A 242 :EII T0287 120 :IF 2be1A 246 :AF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27860 # 1jo0A.116.79 read from T0287.t06.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)S116 (1jo0A)H81 because G (3-10) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1jo0A 82 :ILVLYRPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=27861 # 3eipA.116.52 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 116 :SILGIFLPF 3eipA 53 :EWVPLLQPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27862 # 1xruA.116.47 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 1xruA 45 :IIV T0287 120 :IFLPF 1xruA 49 :GIMPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27864 # 1wdaA.116.583 read from T0287.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 116 :SILGI 1wdaA 577 :SKAEA T0287 123 :PF 1wdaA 584 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27866 # 1g9gA.116.105 read from T0287.t06.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)S116 (1g9gA)N106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1g9gA 107 :KP T0287 120 :IFLPF 1g9gA 110 :TYAPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=27868 # 2be1A.116.231 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)S116 (2be1A)R342 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPF 2be1A 347 :VSPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27869 # 1lm8V.116.29 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S116 (1lm8V)V83 because P (beta_P) conformation "forbidden" or filtered. T0287 117 :ILGIFLPF 1lm8V 84 :VLPVWLNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27870 # 1t61A.116.158 read from T0287.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)G119 (1t61A)G162 because H (helix) conformation "forbidden" or filtered. T0287 116 :SIL 1t61A 159 :ASP T0287 120 :IFLPF 1t61A 163 :SCLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27872 # 1cv8.116.134 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 116 :SIL 1cv8 135 :EVI T0287 120 :IFL 1cv8 139 :IWN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27874 # 2bjqA.116.226 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SILGIF 2bjqA 227 :PVFGRA T0287 123 :PF 2bjqA 234 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27876 # 2bzvA.116.67 read from T0287.t06.many.frag # found chain 2bzvA in template set T0287 116 :SILGIFLPF 2bzvA 282 :NALSLKLPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27877 # 1l1dA.116.44 read from T0287.t06.many.frag # found chain 1l1dA in template set T0287 116 :SILGIFLPF 1l1dA 415 :FKPGIYVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27878 # 1ewfA.116.200 read from T0287.t06.many.frag # found chain 1ewfA in training set Warning: unaligning (T0287)G119 (1ewfA)G204 because Y (epsilon') conformation "forbidden" or filtered. T0287 116 :SIL 1ewfA 201 :SVA T0287 120 :IFLPF 1ewfA 205 :INYGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27880 # 1repC.116.133 read from T0287.t06.many.frag # found chain 1repC in template set Warning: unaligning (T0287)I117 (1repC)L135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1repC)L142 because T (delta_L) conformation "forbidden" or filtered. T0287 116 :S 1repC 134 :Y T0287 118 :LGIFLP 1repC 136 :IPFFIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27882 # 1t62A.116.68 read from T0287.t06.many.frag # found chain 1t62A in template set T0287 116 :SILGIFLPF 1t62A 1069 :GQYDIILDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27883 # 1h2wA.117.324 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1h2wA 325 :KW T0287 120 :IFLPFF 1h2wA 328 :VLVPEH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27885 # 1w66A.117.131 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. T0287 117 :IL 1w66A 130 :RS T0287 120 :IFLPFF 1w66A 133 :VWLPGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27887 # 1seiA.117.57 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :ILGIFL 1seiA 58 :ILRIFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27889 # 1ogoX.117.145 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)G119 (1ogoX)V148 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1ogoX 146 :GI T0287 120 :IFLPFF 1ogoX 149 :IRVPAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27891 # 1qw9A.117.22 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 117 :ILG 1qw9A 23 :IYG T0287 122 :L 1qw9A 28 :I T0287 125 :F 1qw9A 31 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27894 # 1t1uA.117.167 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)I117 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)F169 Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t1uA 170 :S T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=27896 # 1as4B.117.12 read from T0287.t06.many.frag # found chain 1as4B in template set T0287 117 :ILGIFLPFF 1as4B 370 :FLMIIVPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27897 # 3cla.117.137 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 117 :ILGIFL 3cla 144 :HLNISA T0287 124 :FF 3cla 151 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27899 # 1crzA.117.229 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 117 :ILGIFL 1crzA 236 :KLAFAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27900 # 1kaeA.117.125 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. T0287 117 :IL 1kaeA 126 :SV T0287 120 :IFLPFF 1kaeA 129 :LYIPGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27902 # 3eipA.117.53 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 117 :ILGIFLPFF 3eipA 54 :WVPLLQPYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27903 # 1jo0A.117.80 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 117 :ILGIFLPFF 1jo0A 82 :ILVLYRPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27904 # 1chd.117.128 read from T0287.t06.many.frag # found chain 1chd in training set T0287 117 :ILGIFLPFF 1chd 275 :AVGVILTGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27905 # 1t4bA.117.221 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 117 :ILGIFLPFF 1t4bA 222 :LAGSLIPWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27906 # 2be1A.117.132 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 T0287 117 :ILGIF 2be1A 243 :IISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27907 # 1cv8.117.135 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 117 :ILGIFL 1cv8 136 :VIIIWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=27909 # 1g9gA.117.106 read from T0287.t06.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1g9gA 107 :KP T0287 120 :IFLPFF 1g9gA 110 :TYAPEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27911 # 1oewA.117.246 read from T0287.t06.many.frag # found chain 1oewA in training set Warning: unaligning (T0287)L122 (1oewA)F252 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILGIF 1oewA 247 :VGGYV T0287 123 :PFF 1oewA 253 :PCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27913 # 1f8eA.117.74 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1f8eA 156 :RA T0287 120 :IF 1f8eA 159 :IS T0287 123 :PFF 1f8eA 162 :PLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27916 # 1t61A.117.159 read from T0287.t06.many.frag # found chain 1t61A in training set T0287 117 :ILGIFLPFF 1t61A 160 :SPGSCLEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27917 # 1wurA.117.83 read from T0287.t06.many.frag # found chain 1wurA in template set Warning: unaligning (T0287)L118 (1wurA)G85 because L (left) conformation "forbidden" or filtered. T0287 117 :I 1wurA 84 :V T0287 119 :GIFLPFF 1wurA 86 :GAVFPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27919 # 1wdaA.117.584 read from T0287.t06.many.frag # found chain 1wdaA in template set Warning: unaligning (T0287)G119 (1wdaA)E580 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE in next template residue (1wdaA)F583 Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE at template residue (1wdaA)F583 T0287 117 :IL 1wdaA 578 :KA T0287 120 :I 1wdaA 581 :A T0287 123 :PFF 1wdaA 584 :PNM Number of specific fragments extracted= 3 number of extra gaps= 2 total=27922 # 2bjqA.117.227 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)L122 (2bjqA)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :ILGIF 2bjqA 228 :VFGRA T0287 123 :PFF 2bjqA 234 :PDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27924 # 2be1A.117.232 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)I117 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)A344 Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFF 2be1A 347 :VSPTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27925 # 1t62A.117.69 read from T0287.t06.many.frag # found chain 1t62A in template set T0287 117 :ILGIFLPFF 1t62A 1070 :QYDIILDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27926 # 1xruA.117.48 read from T0287.t06.many.frag # found chain 1xruA in template set Warning: unaligning (T0287)G119 (1xruA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0287 117 :IL 1xruA 46 :IV T0287 120 :IFLPFF 1xruA 49 :GIMPIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27928 # 1lm8V.117.30 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)G119 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0287 117 :IL 1lm8V 84 :VL T0287 120 :IFLPFF 1lm8V 87 :VWLNFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27930 # 2bzvA.117.68 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)I117 (2bzvA)A283 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 2bzvA 284 :LSLKLPFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27931 # 1f8eA.117.323 read from T0287.t06.many.frag # found chain 1f8eA in training set T0287 117 :ILGIFLPFF 1f8eA 406 :YSGSFMDYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27932 # 1ttwA.117.35 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 T0287 117 :ILGIFLP 1ttwA 36 :WVVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27933 # 1h2wA.118.325 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)G119 (1h2wA)K327 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1h2wA 326 :W T0287 120 :IFLPFFS 1h2wA 328 :VLVPEHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27935 # 1w66A.118.132 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 118 :LGIFLPFF 1w66A 131 :SGVWLPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=27936 # 1seiA.118.58 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 T0287 118 :L 1seiA 59 :L T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 3 number of extra gaps= 3 total=27939 # 1ogoX.118.146 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 118 :LGIFLPFFS 1ogoX 147 :IVIRVPADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27940 # 3eipA.118.54 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 118 :LGIFLPFFS 3eipA 55 :VPLLQPYFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27941 # 1as4B.118.13 read from T0287.t06.many.frag # found chain 1as4B in template set T0287 118 :LGIFLPFFS 1as4B 371 :LMIIVPTDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27942 # 1crzA.118.230 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)G119 (1crzA)A238 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 118 :L 1crzA 237 :L T0287 121 :FL 1crzA 240 :AL T0287 126 :S 1crzA 245 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=27945 # 1t1uA.118.168 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 T0287 118 :LGIFLPFF 1t1uA 170 :SSYRLPGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=27946 # 1kaeA.118.126 read from T0287.t06.many.frag # found chain 1kaeA in training set T0287 118 :LGIFLPFFS 1kaeA 127 :VGLYIPGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27947 # 1cv8.118.136 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 T0287 118 :LGIFL 1cv8 137 :IIIWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27949 # 1jo0A.118.81 read from T0287.t06.many.frag # found chain 1jo0A in training set Warning: unaligning (T0287)G119 (1jo0A)V84 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1jo0A 83 :L T0287 120 :IFLPFFS 1jo0A 85 :LYRPSEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27951 # 1qw9A.118.23 read from T0287.t06.many.frag # found chain 1qw9A in training set Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)F27 Warning: unaligning (T0287)F121 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)F27 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1qw9A)H30 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1qw9A)H30 T0287 118 :LG 1qw9A 24 :YG T0287 122 :L 1qw9A 28 :I T0287 125 :FS 1qw9A 31 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27954 # 1g9gA.118.107 read from T0287.t06.many.frag # found chain 1g9gA in template set T0287 118 :LGIFLPFFS 1g9gA 108 :PATYAPEFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27955 # 3cla.118.138 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 118 :LGIFL 3cla 145 :LNISA T0287 124 :FFS 3cla 151 :PWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27957 # 1chd.118.129 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)F124 (1chd)G282 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1chd)G284 because S (epsilon) conformation "forbidden" or filtered. T0287 118 :LGIFLP 1chd 276 :VGVILT T0287 125 :F 1chd 283 :M Number of specific fragments extracted= 2 number of extra gaps= 2 total=27959 # 2be1A.118.133 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)P249 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)P249 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)G250 Warning: unaligning (T0287)F125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2be1A)K252 Warning: unaligning (T0287)S126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2be1A)K252 T0287 118 :LGIF 2be1A 244 :ISAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27960 # 1t4bA.118.222 read from T0287.t06.many.frag # found chain 1t4bA in training set T0287 118 :LGIFLPFFS 1t4bA 223 :AGSLIPWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=27961 # 1f8eA.118.75 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L118 (1f8eA)A157 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PF 1f8eA 162 :PL T0287 126 :S 1f8eA 165 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=27964 # 1t61A.118.160 read from T0287.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)I120 (1t61A)S163 because G (3-10) conformation "forbidden" or filtered. T0287 118 :LG 1t61A 161 :PG T0287 121 :FLPFFS 1t61A 164 :CLEEFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27966 # 1t62A.118.70 read from T0287.t06.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)G119 (1t62A)D1072 because E (beta_S) conformation "forbidden" or filtered. T0287 118 :L 1t62A 1071 :Y T0287 120 :IFLPFFS 1t62A 1073 :IILDGQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27968 # 1y8xB.118.78 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 118 :LGIF 1y8xB 423 :LAVA T0287 123 :PFFS 1y8xB 428 :VTTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27970 # 1lm8V.118.31 read from T0287.t06.many.frag # found chain 1lm8V in template set T0287 118 :LGIFLPFFS 1lm8V 85 :LPVWLNFDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27971 # 1flmA.118.15 read from T0287.t06.many.frag # found chain 1flmA in training set T0287 118 :LGIFLPFFS 1flmA 16 :VAIATQGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=27972 # 1sz2A.118.114 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)F124 (1sz2A)M110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 T0287 118 :LGIFLP 1sz2A 104 :VSMAIP T0287 125 :F 1sz2A 111 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=27974 # 1sqwA.118.85 read from T0287.t06.many.frag # found chain 1sqwA in template set T0287 118 :LGIFLPFFS 1sqwA 86 :LDYLAPYAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27975 # 1ttwA.118.36 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 T0287 118 :LGIFLP 1ttwA 37 :VVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27976 # 2be1A.118.233 read from T0287.t06.many.frag # found chain 2be1A in template set Warning: unaligning (T0287)L118 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)A344 Warning: unaligning (T0287)G119 because of BadResidue code BAD_PEPTIDE in next template residue (2be1A)W346 Warning: unaligning (T0287)I120 because of BadResidue code BAD_PEPTIDE at template residue (2be1A)W346 T0287 121 :FLPFFS 2be1A 347 :VSPTFP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27977 # 2fhpA.118.35 read from T0287.t06.many.frag # found chain 2fhpA in template set T0287 118 :LGIFLPFFS 2fhpA 33 :FNMIGPYFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27978 # 1repC.118.135 read from T0287.t06.many.frag # found chain 1repC in template set Warning: unaligning (T0287)F124 (1repC)L142 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIFLP 1repC 136 :IPFFIG T0287 125 :FS 1repC 143 :QN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27980 # 2asbA.118.26 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 118 :LGIF 2asbA 131 :VVVR T0287 124 :F 2asbA 137 :T T0287 126 :S 2asbA 139 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=27983 # 1h2wA.119.326 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 119 :GIFLPFFSK 1h2wA 327 :KVLVPEHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27984 # 1w66A.119.133 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)G119 (1w66A)G132 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1w66A 133 :VWLPGR T0287 127 :K 1w66A 140 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=27986 # 1ogoX.119.147 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 119 :GIFLPFFSK 1ogoX 148 :VIRVPADAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27987 # 1crzA.119.231 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 119 :GIFL 1crzA 238 :AFAL T0287 127 :K 1crzA 246 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=27989 # 3eipA.119.55 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 119 :GIFLPFFSK 3eipA 56 :PLLQPYFNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27990 # 1seiA.119.59 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)G119 (1seiA)R60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG Number of specific fragments extracted= 2 number of extra gaps= 3 total=27992 # 1as4B.119.14 read from T0287.t06.many.frag # found chain 1as4B in template set T0287 119 :GIFLPFFSK 1as4B 372 :MIIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27993 # 1t1uA.119.169 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)G119 (1t1uA)S171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH Number of specific fragments extracted= 1 number of extra gaps= 2 total=27994 # 1cv8.119.137 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)G119 (1cv8)I138 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)S126 (1cv8)N145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :F 1cv8 144 :D Number of specific fragments extracted= 2 number of extra gaps= 3 total=27996 # 1y8xB.119.79 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIF 1y8xB 424 :AVA T0287 123 :PFFSK 1y8xB 428 :VTTPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27998 # 1kaeA.119.127 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)G119 (1kaeA)G128 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1kaeA 129 :LYIPGGSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27999 # 1flmA.119.16 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1flmA 17 :AIATQGED Number of specific fragments extracted= 1 number of extra gaps= 1 total=28000 # 1f8eA.119.76 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)G119 (1f8eA)L158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1f8eA)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1f8eA 159 :ISWPLSS Number of specific fragments extracted= 1 number of extra gaps= 2 total=28001 # 1jo0A.119.82 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 119 :GIFLPFFSK 1jo0A 84 :VLYRPSEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28002 # 2asbA.119.27 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)G119 (2asbA)V132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IF 2asbA 133 :VR T0287 124 :FFSK 2asbA 137 :TETK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28004 # 1t62A.119.71 read from T0287.t06.many.frag # found chain 1t62A in template set T0287 119 :GIFLPFFSK 1t62A 1072 :DIILDGQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28005 # 1sz2A.119.115 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 119 :GIFLPFF 1sz2A 105 :SMAIPML Number of specific fragments extracted= 1 number of extra gaps= 1 total=28006 # 1ttwA.119.37 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 T0287 119 :GIFLP 1ttwA 38 :VHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=28007 # 1lm8V.119.32 read from T0287.t06.many.frag # found chain 1lm8V in template set T0287 119 :GIFLPFFSK 1lm8V 86 :PVWLNFDGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28008 # 1mpxA.119.461 read from T0287.t06.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)G119 (1mpxA)T484 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1mpxA 485 :FVTEPLTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28009 # 1hynP.119.230 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 1hynP 231 :VGRADFLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28010 # 1g9gA.119.108 read from T0287.t06.many.frag # found chain 1g9gA in template set Warning: unaligning (T0287)G119 (1g9gA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1g9gA 110 :TYAPEFQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28011 # 1chd.119.130 read from T0287.t06.many.frag # found chain 1chd in training set Warning: unaligning (T0287)S126 (1chd)G284 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1chd 277 :GVILTGM T0287 127 :K 1chd 285 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=28013 # 2bzvA.119.70 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)K127 (2bzvA)Q293 because G (3-10) conformation "forbidden" or filtered. T0287 119 :GIFLPFFS 2bzvA 285 :SLKLPFDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28014 # 1qg3A.119.19 read from T0287.t06.many.frag # found chain 1qg3A in template set Warning: unaligning (T0287)S126 (1qg3A)G1152 because S (epsilon) conformation "forbidden" or filtered. T0287 119 :GIFLPFF 1qg3A 1145 :FNWLPPS T0287 127 :K 1qg3A 1153 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=28016 # 1io0A.119.124 read from T0287.t06.many.frag # found chain 1io0A in training set Warning: unaligning (T0287)F124 (1io0A)N289 because L (left) conformation "forbidden" or filtered. T0287 119 :GIFLP 1io0A 284 :ELRID T0287 125 :FSK 1io0A 290 :QSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28018 # 3cla.119.139 read from T0287.t06.many.frag # found chain 3cla in training set Warning: unaligning (T0287)P123 (3cla)L150 because D (zeta) conformation "forbidden" or filtered. T0287 119 :GIFL 3cla 146 :NISA T0287 124 :FFSK 3cla 151 :PWVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28020 # 2bjqA.119.33 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2bjqA)K42 because P (beta_P) conformation "forbidden" or filtered. T0287 119 :GIFL 2bjqA 34 :VALW T0287 124 :FFS 2bjqA 39 :KFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28022 # 1oltA.119.55 read from T0287.t06.many.frag # found chain 1oltA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1oltA)K64 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1oltA)K64 T0287 119 :GIFLPFF 1oltA 56 :YVHIPFC Number of specific fragments extracted= 1 number of extra gaps= 1 total=28023 # 1t61A.119.161 read from T0287.t06.many.frag # found chain 1t61A in training set T0287 119 :GIFLPFFSK 1t61A 162 :GSCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28024 # 1h2wA.120.327 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 120 :IFLPFFSKP 1h2wA 328 :VLVPEHEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28025 # 1ttwA.120.38 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 120 :IFLP 1ttwA 39 :HLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=28026 # 1crzA.120.232 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)I120 (1crzA)F239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 240 :AL T0287 127 :KP 1crzA 246 :SL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28028 # 1flmA.120.17 read from T0287.t06.many.frag # found chain 1flmA in training set T0287 120 :IFLPFFSKP 1flmA 18 :IATQGEDGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28029 # 1mpxA.120.462 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 120 :IFLPFFSKP 1mpxA 485 :FVTEPLTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28030 # 1w66A.120.134 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1w66A)A140 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1w66A 133 :VWLPGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28031 # 2asbA.120.28 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IF 2asbA 133 :VR T0287 124 :FFSKP 2asbA 137 :TETKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28033 # 3eipA.120.56 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 120 :IFLPFFSKP 3eipA 57 :LLQPYFNHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28034 # 1ogoX.120.148 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)L122 (1ogoX)V151 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IF 1ogoX 149 :IR T0287 123 :PFFSKP 1ogoX 152 :PADANG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28036 # 1t1uA.120.170 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 120 :IFLPFF 1t1uA 172 :YRLPGH T0287 128 :P 1t1uA 180 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=28038 # 1y8xB.120.80 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IF 1y8xB 425 :VA T0287 123 :PFFSKP 1y8xB 428 :VTTPQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28040 # 1as4B.120.15 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1as4B 373 :IIVPTDTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28041 # 1sz2A.120.116 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 120 :IFLPFF 1sz2A 106 :MAIPML T0287 128 :P 1sz2A 114 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28043 # 1seiA.120.60 read from T0287.t06.many.frag # found chain 1seiA in template set Warning: unaligning (T0287)P123 (1seiA)K64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1seiA)N68 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1seiA)N68 T0287 120 :IFL 1seiA 61 :IFL T0287 124 :FF 1seiA 65 :YG T0287 128 :P 1seiA 69 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=28046 # 2bjqA.120.34 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2bjqA)F40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 2bjqA 35 :ALW T0287 124 :F 2bjqA 39 :K T0287 127 :KP 2bjqA 42 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28049 # 1hynP.120.231 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1hynP 232 :GRADFLE T0287 128 :P 1hynP 240 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=28051 # 1f8eA.120.77 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1f8eA)S164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1f8eA)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 120 :IF 1f8eA 159 :IS T0287 123 :PF 1f8eA 162 :PL T0287 126 :S 1f8eA 165 :S T0287 128 :P 1f8eA 167 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=28055 # 1kaeA.120.128 read from T0287.t06.many.frag # found chain 1kaeA in training set Warning: unaligning (T0287)F125 (1kaeA)G134 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1kaeA)A136 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPF 1kaeA 129 :LYIPG T0287 126 :S 1kaeA 135 :S T0287 128 :P 1kaeA 137 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=28058 # 1cv8.120.138 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)K127 (1cv8)G146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1cv8 139 :IWN T0287 125 :FS 1cv8 144 :DN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28060 # 1te0A.120.296 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 T0287 120 :IF 1te0A 333 :VV T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28062 # 1t62A.120.72 read from T0287.t06.many.frag # found chain 1t62A in template set Warning: unaligning (T0287)K127 (1t62A)Q1080 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFFS 1t62A 1073 :IILDGQS T0287 128 :P 1t62A 1081 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=28064 # 1r5mA.120.142 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFL 1r5mA 255 :NVL T0287 124 :FFSKP 1r5mA 259 :FHRAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28066 # 1ut7A.120.63 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F124 (1ut7A)F65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLP 1ut7A 61 :NKAL T0287 125 :FSK 1ut7A 66 :GEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28068 # 1wnaA.120.47 read from T0287.t06.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)S126 (1wnaA)K54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1wnaA 48 :LLLHTG T0287 127 :K 1wnaA 55 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=28070 # 1jo0A.120.83 read from T0287.t06.many.frag # found chain 1jo0A in training set T0287 120 :IFLPFFSKP 1jo0A 85 :LYRPSEEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28071 # 1t61A.120.162 read from T0287.t06.many.frag # found chain 1t61A in training set Warning: unaligning (T0287)P128 (1t61A)A171 because D (zeta) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 1t61A 163 :SCLEEFRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28072 # 1l1dA.120.48 read from T0287.t06.many.frag # found chain 1l1dA in template set T0287 120 :IFLPFFSKP 1l1dA 419 :IYVDVVSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28073 # 1lm8V.120.33 read from T0287.t06.many.frag # found chain 1lm8V in template set Warning: unaligning (T0287)S126 (1lm8V)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFF 1lm8V 87 :VWLNFD T0287 127 :KP 1lm8V 94 :EP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28075 # 2bzvA.120.71 read from T0287.t06.many.frag # found chain 2bzvA in template set Warning: unaligning (T0287)P128 (2bzvA)G294 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFLPFFSK 2bzvA 286 :LKLPFDNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28076 # 3bamA.120.94 read from T0287.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (3bamA)N102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 120 :IFL 3bamA 95 :VYK T0287 124 :FFS 3bamA 99 :FIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28078 # 1ttwA.121.39 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0287 121 :FLP 1ttwA 40 :LAP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=28080 # 1flmA.121.18 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFS 1flmA 19 :ATQGED T0287 128 :PI 1flmA 26 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28082 # 1h2wA.121.328 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 121 :FLPFFSKPI 1h2wA 329 :LVPEHEKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28083 # 2bjqA.121.35 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2bjqA 36 :LW T0287 124 :FFSKPI 2bjqA 39 :KFGKPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28085 # 1hynP.121.232 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FLP 1hynP 233 :RAD T0287 125 :FSKPI 1hynP 237 :LEQPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28087 # 1mpxA.121.463 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 121 :FLPFFSKPI 1mpxA 486 :VTEPLTEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28088 # 1y8xB.121.81 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)L122 (1y8xB)D427 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1y8xB)Q432 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :F 1y8xB 426 :A T0287 123 :PFFS 1y8xB 428 :VTTP T0287 128 :PI 1y8xB 433 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28091 # 2asbA.121.29 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. T0287 121 :F 2asbA 134 :R T0287 124 :FFSKPI 2asbA 137 :TETKAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28093 # 1crzA.121.233 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 240 :AL T0287 127 :KPI 1crzA 246 :SLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28095 # 1dkiA.121.193 read from T0287.t06.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)F124 (1dkiA)Y79 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FLP 1dkiA 76 :NNP T0287 125 :FSKPI 1dkiA 80 :FNHPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28097 # 1te0A.121.297 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 T0287 121 :F 1te0A 334 :V T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=28100 # 1ut7A.121.64 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)F125 (1ut7A)G66 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPF 1ut7A 62 :KALF T0287 126 :SK 1ut7A 67 :EK T0287 129 :I 1ut7A 70 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=28103 # 1t1uA.121.171 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 121 :FLPFF 1t1uA 173 :RLPGH T0287 128 :PI 1t1uA 180 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28105 # 1sz2A.121.117 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 121 :FLPFF 1sz2A 107 :AIPML T0287 128 :PI 1sz2A 114 :EH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28107 # 3eipA.121.57 read from T0287.t06.many.frag # found chain 3eipA in training set T0287 121 :FLPFFSKPI 3eipA 58 :LQPYFNHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28108 # 1f8eA.121.78 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)L122 (1f8eA)W161 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :F 1f8eA 160 :S T0287 123 :PFFSKPI 1f8eA 162 :PLSSPPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28110 # 1oh0A.121.88 read from T0287.t06.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 121 :F 1oh0A 89 :E T0287 124 :F 1oh0A 92 :W T0287 127 :KPI 1oh0A 95 :QPC Number of specific fragments extracted= 3 number of extra gaps= 2 total=28113 # 1ogoX.121.149 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1ogoX 150 :RVPADAN T0287 129 :I 1ogoX 158 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=28115 # 1w0pA.121.419 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FLP 1w0pA 420 :NLN T0287 125 :FSKPI 1w0pA 424 :VSAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28117 # 1r5mA.121.143 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1r5mA 256 :VL T0287 124 :FFSKPI 1r5mA 259 :FHRAPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28119 # 1w66A.121.135 read from T0287.t06.many.frag # found chain 1w66A in template set Warning: unaligning (T0287)S126 (1w66A)P139 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1w66A)R141 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFF 1w66A 134 :WLPGR T0287 127 :K 1w66A 140 :A T0287 129 :I 1w66A 142 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=28122 # 1crzA.121.277 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 121 :FL 1crzA 284 :TS T0287 124 :FFSKPI 1crzA 287 :QAGRPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28124 # 1nwzA.121.94 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1nwzA)T101 because P (beta_P) conformation "forbidden" or filtered. T0287 121 :FL 1nwzA 95 :TF T0287 124 :F 1nwzA 98 :Y T0287 128 :PI 1nwzA 102 :PT Number of specific fragments extracted= 3 number of extra gaps= 2 total=28127 # 1as4B.121.16 read from T0287.t06.many.frag # found chain 1as4B in template set Warning: unaligning (T0287)P128 (1as4B)N381 because Y (epsilon') conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1as4B 374 :IVPTDTQ T0287 129 :I 1as4B 382 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28129 # 1quqB.121.16 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 1quqB 17 :LA T0287 124 :FF 1quqB 20 :FI T0287 127 :KPI 1quqB 23 :KPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28132 # 1cv8.121.139 read from T0287.t06.many.frag # found chain 1cv8 in training set Warning: unaligning (T0287)P123 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1cv8)W143 Warning: unaligning (T0287)F124 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1cv8)W143 Warning: unaligning (T0287)P128 (1cv8)F147 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 1cv8 140 :WN T0287 125 :FSK 1cv8 144 :DNG T0287 129 :I 1cv8 148 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=28135 # 1wnaA.121.48 read from T0287.t06.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 1wnaA 49 :LLHTGKK T0287 129 :I 1wnaA 57 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=28137 # 2fbeA.121.56 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2fbeA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FL 2fbeA 57 :TP T0287 124 :FF 2fbeA 60 :FT T0287 127 :K 2fbeA 63 :G T0287 129 :I 2fbeA 65 :H Number of specific fragments extracted= 4 number of extra gaps= 3 total=28141 # 2axwA.121.82 read from T0287.t06.many.frag # found chain 2axwA in template set Warning: unaligning (T0287)P128 (2axwA)Q90 because E (beta_S) conformation "forbidden" or filtered. T0287 121 :FLPFFSK 2axwA 83 :SRPGQEE T0287 129 :I 2axwA 91 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28143 # 3bamA.121.95 read from T0287.t06.many.frag # found chain 3bamA in training set Warning: unaligning (T0287)P123 (3bamA)E98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (3bamA)N102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (3bamA)S103 because T (delta_L) conformation "forbidden" or filtered. T0287 121 :FL 3bamA 96 :YK T0287 124 :FFS 3bamA 99 :FIE T0287 129 :I 3bamA 104 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=28146 # 2bjqA.122.36 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2bjqA 37 :W T0287 124 :FFSKPIM 2bjqA 39 :KFGKPIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28148 # 1flmA.122.19 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :LPFFS 1flmA 20 :TQGED T0287 128 :PIM 1flmA 26 :PHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28150 # 1hynP.122.233 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 122 :LPFFSKPIM 1hynP 234 :ADFLEQPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28151 # 1ttwA.122.40 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 T0287 122 :LP 1ttwA 41 :AP T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=28153 # 1y8xB.122.82 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 122 :LPFFSKPIM 1y8xB 427 :DVTTPQTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28154 # 1mpxA.122.464 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 122 :LPFFSKPIM 1mpxA 487 :TEPLTEPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28155 # 1dkiA.122.194 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 122 :LPFFSKPIM 1dkiA 77 :NPYFNHPKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28156 # 1h2wA.122.329 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 122 :LPFFSKPIM 1h2wA 330 :VPEHEKDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28157 # 1te0A.122.298 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)L122 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)M336 Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK Number of specific fragments extracted= 1 number of extra gaps= 2 total=28158 # 2asbA.122.30 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)L122 (2asbA)I135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIM 2asbA 139 :TKASE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28160 # 1quqB.122.17 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1quqB)F20 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1quqB 18 :A T0287 125 :FSKPIM 1quqB 21 :IDKPVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=28162 # 1crzA.122.234 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :L 1crzA 241 :L T0287 127 :KPIM 1crzA 246 :SLNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28164 # 1crzA.122.278 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1crzA 285 :S T0287 124 :FFSKPIM 1crzA 287 :QAGRPQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28166 # 1w0pA.122.420 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)F124 (1w0pA)G423 because T (delta_L) conformation "forbidden" or filtered. T0287 122 :LP 1w0pA 421 :LN T0287 125 :FSKPIM 1w0pA 424 :VSAPII Number of specific fragments extracted= 2 number of extra gaps= 1 total=28168 # 1nwzA.122.95 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1nwzA)K104 because P (beta_P) conformation "forbidden" or filtered. T0287 122 :L 1nwzA 96 :F T0287 124 :F 1nwzA 98 :Y T0287 126 :SKPI 1nwzA 100 :MTPT Number of specific fragments extracted= 3 number of extra gaps= 3 total=28171 # 1ut7A.122.65 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFFSK 1ut7A 63 :ALFGEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28173 # 1oh0A.122.89 read from T0287.t06.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)L122 (1oh0A)M90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 127 :KPIM 1oh0A 95 :QPCA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28175 # 1amx.122.59 read from T0287.t06.many.frag # found chain 1amx in template set Warning: unaligning (T0287)L122 (1amx)K198 because L (left) conformation "forbidden" or filtered. T0287 123 :PFFSKPIM 1amx 199 :SYVSKDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28176 # 2bsfA.122.86 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :LPFF 2bsfA 237 :LTVT T0287 127 :K 2bsfA 242 :N T0287 129 :IM 2bsfA 244 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28179 # 2fbeA.122.57 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2fbeA 58 :P T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IM 2fbeA 65 :HY Number of specific fragments extracted= 3 number of extra gaps= 2 total=28182 # 1sz2A.122.118 read from T0287.t06.many.frag # found chain 1sz2A in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1sz2A)K113 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1sz2A)K113 T0287 122 :LPFF 1sz2A 108 :IPML T0287 128 :PIM 1sz2A 114 :EHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28184 # 1j0pA.122.11 read from T0287.t06.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 122 :L 1j0pA 11 :M T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIM 1j0pA 17 :PVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28187 # 1b12A.122.36 read from T0287.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 122 :L 1b12A 112 :D T0287 128 :PIM 1b12A 118 :TLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28189 # 1r5mA.122.144 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)P123 (1r5mA)N258 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F124 (1r5mA)F259 because G (3-10) conformation "forbidden" or filtered. T0287 122 :L 1r5mA 257 :L T0287 125 :FSKPIM 1r5mA 260 :HRAPIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28191 # 2a25A.122.137 read from T0287.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 122 :L 2a25A 227 :L T0287 124 :FFSK 2a25A 229 :GHRR T0287 129 :IM 2a25A 234 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=28194 # 4bcl.122.244 read from T0287.t06.many.frag # found chain 4bcl in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (4bcl)Q247 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (4bcl)Q247 Warning: unaligning (T0287)M130 (4bcl)S253 because Y (epsilon') conformation "forbidden" or filtered. T0287 122 :L 4bcl 245 :V T0287 125 :FSKPI 4bcl 248 :LNKPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28196 # 1cczA.122.78 read from T0287.t06.many.frag # found chain 1cczA in training set T0287 122 :LPFFSKPIM 1cczA 79 :SPNITDTMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28197 # 1b7yA.122.257 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 122 :LPFFS 1b7yA 258 :FPFVE T0287 128 :PIM 1b7yA 264 :GAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28199 # 1zsqA.122.46 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 122 :L 1zsqA 116 :S T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIM 1zsqA 122 :PFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28202 # 1t1uA.122.172 read from T0287.t06.many.frag # found chain 1t1uA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1t1uA)Q179 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)Q179 T0287 122 :LPFF 1t1uA 174 :LPGH T0287 128 :PIM 1t1uA 180 :DTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28204 # 2bjqA.123.37 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)P123 (2bjqA)Y38 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 2bjqA 39 :KFGKPIHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28205 # 1flmA.123.20 read from T0287.t06.many.frag # found chain 1flmA in training set T0287 123 :PFFSKPIMF 1flmA 21 :QGEDGPHLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28206 # 1hynP.123.234 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 123 :PFFS 1hynP 235 :DFLE T0287 128 :PIMF 1hynP 240 :PVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28208 # 1y8xB.123.83 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 123 :PFFSKPIMF 1y8xB 428 :VTTPQTVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28209 # 1ttwA.123.41 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 123 :P 1ttwA 42 :P T0287 129 :I 1ttwA 48 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=28211 # 1te0A.123.299 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)M336 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FFSK 1te0A 337 :RDDK T0287 131 :F 1te0A 344 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=28213 # 1dkiA.123.195 read from T0287.t06.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)F124 (1dkiA)Y79 because G (3-10) conformation "forbidden" or filtered. T0287 123 :P 1dkiA 78 :P T0287 125 :FSKPIMF 1dkiA 80 :FNHPKNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28215 # 1quqB.123.18 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)P123 (1quqB)Q19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 1quqB 20 :FI T0287 127 :KPIMF 1quqB 23 :KPVCF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28217 # 1h2wA.123.330 read from T0287.t06.many.frag # found chain 1h2wA in training set T0287 123 :PFFSKPIMF 1h2wA 331 :PEHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28218 # 1crzA.123.279 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 (1crzA)D286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1crzA)V293 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 1crzA 287 :QA T0287 128 :PI 1crzA 291 :PQ T0287 131 :F 1crzA 294 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=28221 # 1crzA.123.235 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)P123 because of BadResidue code BAD_PEPTIDE in next template residue (1crzA)K243 Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMF 1crzA 245 :GSLNLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=28222 # 1mpxA.123.465 read from T0287.t06.many.frag # found chain 1mpxA in template set T0287 123 :PFFSKPIMF 1mpxA 488 :EPLTEPLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28223 # 2asbA.123.31 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)P123 (2asbA)G136 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIMF 2asbA 139 :TKASEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28225 # 1nwzA.123.96 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)P123 (1nwzA)D97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 T0287 124 :FF 1nwzA 98 :YQ T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 3 total=28227 # 1w0pA.123.421 read from T0287.t06.many.frag # found chain 1w0pA in training set T0287 123 :PFFSKPIMF 1w0pA 422 :NGVSAPIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28228 # 1dg6A.123.123 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)P123 (1dg6A)T214 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1dg6A 215 :SYPAPILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28229 # 1zsqA.123.47 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)P123 (1zsqA)M117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMF 1zsqA 122 :PFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28231 # 2a25A.123.138 read from T0287.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P123 (2a25A)N228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2a25A 229 :GHRR T0287 129 :IMF 2a25A 234 :LTW Number of specific fragments extracted= 2 number of extra gaps= 2 total=28233 # 2bsfA.123.87 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 123 :PFFSK 2bsfA 238 :TVTSN T0287 129 :IMF 2bsfA 244 :VLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28235 # 1b7yA.123.258 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 123 :PFFS 1b7yA 259 :PFVE T0287 128 :PIMF 1b7yA 264 :GAQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28237 # 1ut7A.123.66 read from T0287.t06.many.frag # found chain 1ut7A in template set Warning: unaligning (T0287)P128 (1ut7A)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)F73 T0287 123 :PFFSK 1ut7A 64 :LFGEK T0287 129 :IM 1ut7A 70 :WY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28239 # 1vchA.123.86 read from T0287.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)F124 (1vchA)Y88 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1vchA)D91 because L (left) conformation "forbidden" or filtered. T0287 123 :P 1vchA 87 :P T0287 125 :FS 1vchA 89 :ME T0287 128 :PIMF 1vchA 92 :PIIQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=28242 # 1amx.123.60 read from T0287.t06.many.frag # found chain 1amx in template set T0287 123 :PFFSKPIMF 1amx 199 :SYVSKDITI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28243 # 1oh0A.123.90 read from T0287.t06.many.frag # found chain 1oh0A in training set Warning: unaligning (T0287)P123 (1oh0A)V91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F125 (1oh0A)N93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1oh0A)G94 because L (left) conformation "forbidden" or filtered. T0287 124 :F 1oh0A 92 :W T0287 127 :KPIMF 1oh0A 95 :QPCAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28245 # 2fbeA.123.58 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P123 (2fbeA)R59 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (2fbeA)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (2fbeA)G63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FF 2fbeA 60 :FT T0287 129 :IMF 2fbeA 65 :HYW Number of specific fragments extracted= 2 number of extra gaps= 2 total=28247 # 1xubA.123.259 read from T0287.t06.many.frag # found chain 1xubA in training set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xubA)R244 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xubA)R244 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1xubA)S246 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1xubA)S246 T0287 123 :PFF 1xubA 240 :VEI T0287 130 :MF 1xubA 247 :LM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28249 # 1j0pA.123.12 read from T0287.t06.many.frag # found chain 1j0pA in training set Warning: unaligning (T0287)P123 (1j0pA)D12 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE in next template residue (1j0pA)Q16 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE at template residue (1j0pA)Q16 T0287 124 :FF 1j0pA 13 :KT T0287 128 :PIMF 1j0pA 17 :PVVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28251 # 1b12A.123.37 read from T0287.t06.many.frag # found chain 1b12A in template set Warning: unaligning (T0287)P123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b12A)I114 Warning: unaligning (T0287)F124 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)I114 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Y115 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1b12A)Q116 Warning: unaligning (T0287)K127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b12A)K117 T0287 128 :PIMF 1b12A 118 :TLIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28252 # 1cczA.123.79 read from T0287.t06.many.frag # found chain 1cczA in training set T0287 123 :PFFSKPIMF 1cczA 80 :PNITDTMKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28253 # 2fojA.123.12 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P123 because first residue in template chain is (2fojA)T63 Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMF 2fojA 69 :ATF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28255 # 2bjqA.124.38 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :FF 2bjqA 39 :KF T0287 127 :KPIMFK 2bjqA 42 :KPIHGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28257 # 1y8xB.124.84 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 124 :FFSKPIMFK 1y8xB 429 :TTPQTVLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28258 # 1hynP.124.235 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)F124 (1hynP)F236 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1hynP 237 :LE T0287 128 :PIMFK 1hynP 240 :PVLGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28260 # 1ttwA.124.42 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :K 1ttwA 51 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=28262 # 1flmA.124.21 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 T0287 124 :FFS 1flmA 22 :GED T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=28264 # 1te0A.124.300 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 124 :FF 1te0A 337 :RD T0287 127 :K 1te0A 340 :K T0287 131 :FK 1te0A 344 :LQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=28267 # 1quqB.124.19 read from T0287.t06.many.frag # found chain 1quqB in template set T0287 124 :FFSKPIMFK 1quqB 20 :FIDKPVCFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28268 # 1dkiA.124.196 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 124 :FFSKPIMFK 1dkiA 79 :YFNHPKNLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28269 # 1crzA.124.280 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)S126 (1crzA)G289 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FF 1crzA 287 :QA T0287 128 :PIMFK 1crzA 291 :PQVYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28271 # 1crzA.124.236 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F124 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)K243 Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 T0287 126 :SKPIMFK 1crzA 245 :GSLNLYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28272 # 1h2wA.124.331 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1h2wA 332 :EHEKDVLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28273 # 1dg6A.124.124 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)K132 (1dg6A)M223 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1dg6A 215 :SYPAPILL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28274 # 1w0pA.124.422 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)M130 (1w0pA)I429 because P (beta_P) conformation "forbidden" or filtered. T0287 124 :FFSKPI 1w0pA 423 :GVSAPI T0287 131 :FK 1w0pA 430 :LQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28276 # 2asbA.124.32 read from T0287.t06.many.frag # found chain 2asbA in template set Warning: unaligning (T0287)F125 (2asbA)E138 because T (delta_L) conformation "forbidden" or filtered. T0287 124 :F 2asbA 137 :T T0287 126 :SKPIMFK 2asbA 139 :TKASEGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28278 # 1zsqA.124.48 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 124 :FF 1zsqA 118 :ER T0287 128 :PIMF 1zsqA 122 :PFVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28280 # 1nwzA.124.97 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 124 :FF 1nwzA 98 :YQ T0287 127 :KPIM 1nwzA 101 :TPTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28282 # 2bsfA.124.88 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2bsfA 239 :VTSN T0287 129 :IMFK 2bsfA 244 :VLLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28284 # 1gvp.124.37 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)F124 (1gvp)G38 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1gvp 39 :NEYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28285 # 1b7yA.124.259 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)F124 (1b7yA)F260 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFK 1b7yA 264 :GAQFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28287 # 2a25A.124.139 read from T0287.t06.many.frag # found chain 2a25A in template set Warning: unaligning (T0287)P128 (2a25A)R233 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2a25A 229 :GHRR T0287 129 :IMFK 2a25A 234 :LTWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28289 # 1amx.124.61 read from T0287.t06.many.frag # found chain 1amx in template set T0287 124 :FFSKPIMFK 1amx 200 :YVSKDITIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28290 # 1vchA.124.87 read from T0287.t06.many.frag # found chain 1vchA in template set Warning: unaligning (T0287)F124 (1vchA)Y88 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1vchA 89 :MEDPIIQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28291 # 1gnyA.124.100 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1gnyA)T199 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFS 1gnyA 191 :TAD T0287 128 :PIMF 1gnyA 195 :DLTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28293 # 2fojA.124.13 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 2fojA 64 :SWRS T0287 129 :IMFK 2fojA 69 :ATFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28295 # 1mpxA.124.466 read from T0287.t06.many.frag # found chain 1mpxA in template set Warning: unaligning (T0287)K132 (1mpxA)A497 because D (zeta) conformation "forbidden" or filtered. T0287 124 :FFSKPIMF 1mpxA 489 :PLTEPLQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28296 # 1uh4A.124.584 read from T0287.t06.many.frag # found chain 1uh4A in template set T0287 124 :FFSKPIMFK 1uh4A 585 :NDSVSHTVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28297 # 2fbeA.124.59 read from T0287.t06.many.frag # found chain 2fbeA in template set Warning: unaligning (T0287)P128 (2fbeA)R64 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 2fbeA 60 :FTSG T0287 129 :IMFK 2fbeA 65 :HYWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28299 # 1wnaA.124.51 read from T0287.t06.many.frag # found chain 1wnaA in training set Warning: unaligning (T0287)P128 (1wnaA)D56 because E (beta_S) conformation "forbidden" or filtered. T0287 124 :FFSK 1wnaA 52 :TGKK T0287 129 :IMFK 1wnaA 57 :LLVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28301 # 1y1oA.124.70 read from T0287.t06.many.frag # found chain 1y1oA in template set T0287 124 :FFSKPIMFK 1y1oA 68 :KRSAAVITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28302 # 1l6pA.124.75 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 124 :FFSK 1l6pA 76 :IYRD T0287 129 :IMFK 1l6pA 81 :LTLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28304 # 1quqB.125.20 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1quqB 21 :IDKPVCFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28305 # 1dkiA.125.197 read from T0287.t06.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)S126 (1dkiA)N81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1dkiA)H82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1dkiA)P83 because C (cis) conformation "forbidden" or filtered. T0287 125 :F 1dkiA 80 :F T0287 129 :IMFKM 1dkiA 84 :KNLFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28307 # 1y8xB.125.85 read from T0287.t06.many.frag # found chain 1y8xB in template set T0287 125 :FSKPIMFKM 1y8xB 430 :TPQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28308 # 2bjqA.125.39 read from T0287.t06.many.frag # found chain 2bjqA in training set T0287 125 :FSKPIMFKM 2bjqA 40 :FGKPIHGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28309 # 1te0A.125.301 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)S126 (1te0A)D339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 125 :F 1te0A 338 :D T0287 127 :K 1te0A 340 :K T0287 131 :FKM 1te0A 344 :LQV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28312 # 1hynP.125.236 read from T0287.t06.many.frag # found chain 1hynP in template set T0287 125 :FSKPIMFKM 1hynP 237 :LEQPVLGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28313 # 1flmA.125.22 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)S126 (1flmA)D24 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 125 :F 1flmA 23 :E T0287 128 :PIMF 1flmA 26 :PHLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=28315 # 1ttwA.125.43 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 T0287 129 :I 1ttwA 48 :L T0287 132 :KM 1ttwA 51 :FM Number of specific fragments extracted= 2 number of extra gaps= 2 total=28317 # 1crzA.125.281 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 125 :FSKPIMFKM 1crzA 288 :AGRPQVYKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28318 # 1crzA.125.237 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1crzA)T244 Warning: unaligning (T0287)S126 (1crzA)G245 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1crzA)L249 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 1crzA 246 :SLN T0287 131 :FKM 1crzA 250 :YVM Number of specific fragments extracted= 2 number of extra gaps= 2 total=28320 # 1dg6A.125.125 read from T0287.t06.many.frag # found chain 1dg6A in training set T0287 125 :FSKPIMFKM 1dg6A 216 :YPAPILLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28321 # 1gnyA.125.101 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 125 :FSKPIMFKM 1gnyA 192 :ADTDLTLTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28322 # 1w0pA.125.423 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)K127 (1w0pA)A426 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FS 1w0pA 424 :VS T0287 128 :PIMFKM 1w0pA 427 :PIILQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28324 # 1zsqA.125.49 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 Warning: unaligning (T0287)K132 (1zsqA)D126 because D (zeta) conformation "forbidden" or filtered. T0287 125 :F 1zsqA 119 :R T0287 128 :PIMF 1zsqA 122 :PFVL T0287 133 :M 1zsqA 127 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=28327 # 1gvp.125.38 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 T0287 125 :FSKPIMFK 1gvp 39 :NEYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28328 # 2asbA.125.33 read from T0287.t06.many.frag # found chain 2asbA in template set T0287 125 :FSKPIMFKM 2asbA 138 :ETKASEGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28329 # 1nwzA.125.98 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)F125 (1nwzA)Q99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 127 :KPIM 1nwzA 101 :TPTK T0287 133 :M 1nwzA 107 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=28331 # 1h2wA.125.332 read from T0287.t06.many.frag # found chain 1h2wA in training set Warning: unaligning (T0287)K132 (1h2wA)W340 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSKPIMF 1h2wA 333 :HEKDVLE T0287 133 :M 1h2wA 341 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28333 # 1ikoP.125.77 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1ikoP 107 :PD T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKM 1ikoP 113 :FTI Number of specific fragments extracted= 3 number of extra gaps= 2 total=28336 # 1b7yA.125.260 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 125 :FS 1b7yA 261 :VE T0287 128 :PIMFKM 1b7yA 264 :GAQFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28338 # 1ddlA.125.123 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)F125 because of BadResidue code BAD_PEPTIDE at template residue (1ddlA)S124 T0287 126 :SKPIMFKM 1ddlA 125 :VKPIDVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28339 # 1pgl2.125.290 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)S126 (1pgl2)Q292 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :F 1pgl2 291 :I T0287 127 :K 1pgl2 293 :E T0287 129 :IMFKM 1pgl2 295 :VVLKF Number of specific fragments extracted= 3 number of extra gaps= 2 total=28342 # 2awgA.125.9 read from T0287.t06.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)S126 (2awgA)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. T0287 125 :F 2awgA 97 :L T0287 127 :K 2awgA 99 :N T0287 129 :IMFKM 2awgA 101 :LLRKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=28345 # 2bsfA.125.89 read from T0287.t06.many.frag # found chain 2bsfA in template set Warning: unaligning (T0287)S126 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2bsfA)V243 because E (beta_S) conformation "forbidden" or filtered. T0287 125 :F 2bsfA 240 :T T0287 127 :K 2bsfA 242 :N T0287 129 :IMFKM 2bsfA 244 :VLLTF Number of specific fragments extracted= 3 number of extra gaps= 2 total=28348 # 1vcaA.125.104 read from T0287.t06.many.frag # found chain 1vcaA in training set T0287 125 :FSKPIMFKM 1vcaA 105 :AGKPITVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28349 # 1v05A.125.20 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)S126 (1v05A)G2651 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 125 :F 1v05A 2650 :V T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKM 1v05A 2656 :FTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28352 # 2fojA.125.14 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FSK 2fojA 65 :WRS T0287 129 :IMFKM 2fojA 69 :ATFQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28354 # 1uh4A.125.585 read from T0287.t06.many.frag # found chain 1uh4A in template set Warning: unaligning (T0287)M133 (1uh4A)V594 because P (beta_P) conformation "forbidden" or filtered. T0287 125 :FSKPIMFK 1uh4A 586 :DSVSHTVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28355 # 1l6pA.125.76 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 125 :FS 1l6pA 77 :YR T0287 129 :IMFKM 1l6pA 81 :LTLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28357 # 2bbdA.125.126 read from T0287.t06.many.frag # found chain 2bbdA in template set Warning: unaligning (T0287)P128 (2bbdA)N131 because L (left) conformation "forbidden" or filtered. T0287 125 :FSK 2bbdA 128 :MVQ T0287 129 :IMFKM 2bbdA 132 :IILSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28359 # 1te0A.126.302 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0287 126 :SK 1te0A 339 :DK T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28361 # 1dkiA.126.198 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 126 :SKPIMFKMS 1dkiA 81 :NHPKNLFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28362 # 2bjqA.126.40 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S126 (2bjqA)G41 because T (delta_L) conformation "forbidden" or filtered. T0287 127 :KPIMFKMS 2bjqA 42 :KPIHGRAW Number of specific fragments extracted= 1 number of extra gaps= 1 total=28363 # 1quqB.126.21 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)S126 (1quqB)D22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :KPIMFK 1quqB 23 :KPVCFV T0287 134 :S 1quqB 30 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=28365 # 1y8xB.126.86 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 T0287 126 :SKPIMFKM 1y8xB 431 :PQTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28366 # 1gnyA.126.102 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)K127 (1gnyA)T194 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1gnyA 193 :D T0287 128 :PIMFKMS 1gnyA 195 :DLTLTCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28368 # 1flmA.126.23 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 126 :SKPIMF 1flmA 24 :DGPHLV T0287 134 :S 1flmA 32 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=28370 # 1dg6A.126.126 read from T0287.t06.many.frag # found chain 1dg6A in training set T0287 126 :SKPIMFKMS 1dg6A 217 :PAPILLMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28371 # 1crzA.126.282 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)K127 (1crzA)R290 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :S 1crzA 289 :G T0287 128 :PIMFKMS 1crzA 291 :PQVYKVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28373 # 1hynP.126.237 read from T0287.t06.many.frag # found chain 1hynP in template set Warning: unaligning (T0287)K127 (1hynP)Q239 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1hynP 238 :E T0287 128 :PIMFKMS 1hynP 240 :PVLGFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28375 # 1crzA.126.238 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 126 :SKPIMFKMS 1crzA 245 :GSLNLYVMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28376 # 1ttwA.126.44 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)S126 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E45 Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 133 :MS 1ttwA 52 :MR Number of specific fragments extracted= 2 number of extra gaps= 2 total=28378 # 1pgl2.126.291 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 126 :SK 1pgl2 292 :QE T0287 129 :IMFKMS 1pgl2 295 :VVLKFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28380 # 1gvp.126.39 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 126 :SKPIMFK 1gvp 40 :EYPVLVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28381 # 1ikoP.126.78 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :S 1ikoP 108 :D T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKMS 1ikoP 113 :FTIK Number of specific fragments extracted= 3 number of extra gaps= 2 total=28384 # 1v05A.126.21 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SKP 1v05A 2651 :GQK T0287 132 :KMS 1v05A 2657 :TVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28386 # 1b7yA.126.261 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 126 :S 1b7yA 262 :E T0287 128 :PIMFKMS 1b7yA 264 :GAQFAVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=28388 # 1l6pA.126.77 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 1l6pA 78 :RD T0287 129 :IMFKMS 1l6pA 81 :LTLPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28390 # 1ddlA.126.124 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)K132 (1ddlA)E131 because P (beta_P) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1ddlA 125 :VKPIDV T0287 133 :MS 1ddlA 132 :AN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28392 # 1zsqA.126.50 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)S126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zsqA)P121 Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMS 1zsqA 122 :PFVLDAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28393 # 1wmxA.126.130 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 126 :S 1wmxA 131 :T T0287 129 :IM 1wmxA 134 :QH T0287 133 :MS 1wmxA 138 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28396 # 1ogoX.126.154 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. T0287 126 :SK 1ogoX 155 :AN T0287 129 :IMFKMS 1ogoX 158 :RKFSVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28398 # 2fojA.126.15 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 126 :SK 2fojA 66 :RS T0287 129 :IMFKMS 2fojA 69 :ATFQFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28400 # 1vcaA.126.105 read from T0287.t06.many.frag # found chain 1vcaA in training set T0287 126 :SKPIMFKMS 1vcaA 106 :GKPITVKCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28401 # 2awgA.126.10 read from T0287.t06.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)S126 (2awgA)G98 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2awgA)T106 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :K 2awgA 99 :N T0287 129 :IMFKM 2awgA 101 :LLRKK Number of specific fragments extracted= 2 number of extra gaps= 3 total=28403 # 1w0pA.126.424 read from T0287.t06.many.frag # found chain 1w0pA in training set T0287 126 :SKPIMFKMS 1w0pA 425 :SAPIILQSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28404 # 2d9rA.126.18 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MS 2d9rA 26 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28406 # 1mspA.126.64 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)S126 (1mspA)K65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMFKMS 1mspA 68 :VLMAVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28408 # 1mwpA.126.61 read from T0287.t06.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)K132 (1mwpA)Q95 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 126 :SKPIMF 1mwpA 89 :NQPVTI T0287 134 :S 1mwpA 97 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=28410 # 1nwzA.126.99 read from T0287.t06.many.frag # found chain 1nwzA in training set Warning: unaligning (T0287)S126 (1nwzA)M100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1nwzA)K106 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (1nwzA)K106 T0287 127 :KPIM 1nwzA 101 :TPTK T0287 133 :MS 1nwzA 107 :VH Number of specific fragments extracted= 2 number of extra gaps= 2 total=28412 # 1te0A.127.303 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 T0287 127 :K 1te0A 340 :K T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=28414 # 1quqB.127.22 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1quqB)V28 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :KP 1quqB 23 :KP T0287 130 :MF 1quqB 26 :CF T0287 133 :MSI 1quqB 29 :GRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28417 # 1gnyA.127.103 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 127 :KPIMFKMSI 1gnyA 194 :TDLTLTCTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28418 # 1dkiA.127.199 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 127 :KPIMFKMSI 1dkiA 82 :HPKNLFAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28419 # 2bjqA.127.41 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)M130 (2bjqA)H45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 T0287 127 :KPI 2bjqA 42 :KPI T0287 131 :FKM 2bjqA 46 :GRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28421 # 1y8xB.127.87 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 127 :KPIMFKM 1y8xB 432 :QTVLFKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28422 # 1dg6A.127.127 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)M130 (1dg6A)L221 because P (beta_P) conformation "forbidden" or filtered. T0287 127 :KPI 1dg6A 218 :API T0287 131 :FKMSI 1dg6A 222 :LMKSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28424 # 1pgl2.127.292 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1pgl2 293 :E T0287 129 :IMFKMSI 1pgl2 295 :VVLKFSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28426 # 1wmxA.127.131 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wmxA)W133 Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSI 1wmxA 138 :IPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28428 # 1l6pA.127.78 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)K127 (1l6pA)D79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1l6pA 81 :LTLPVTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28429 # 1flmA.127.24 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K127 (1flmA)G25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SI 1flmA 32 :WN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28431 # 1ddlA.127.125 read from T0287.t06.many.frag # found chain 1ddlA in template set T0287 127 :KPIMFKMSI 1ddlA 126 :KPIDVEANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28432 # 1gvp.127.40 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 127 :KPIMFK 1gvp 41 :YPVLVK T0287 135 :I 1gvp 49 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=28434 # 1crzA.127.283 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 290 :RPQVYKVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28435 # 1ikoP.127.79 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)K127 (1ikoP)Q109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKMSI 1ikoP 113 :FTIKF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28437 # 1v05A.127.22 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 127 :KP 1v05A 2652 :QK T0287 131 :FKMSI 1v05A 2656 :FTVDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=28439 # 2d9rA.127.19 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)K127 because first residue in template chain is (2d9rA)S20 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSI 2d9rA 26 :AII Number of specific fragments extracted= 2 number of extra gaps= 1 total=28441 # 1b7yA.127.262 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)K127 (1b7yA)P263 because C (cis) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1b7yA 264 :GAQFAVWW Number of specific fragments extracted= 1 number of extra gaps= 1 total=28442 # 1ogoX.127.155 read from T0287.t06.many.frag # found chain 1ogoX in training set T0287 127 :KPIMFKMSI 1ogoX 156 :NGRKFSVEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28443 # 1zsqA.127.51 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zsqA)P121 T0287 128 :PIMFKMSI 1zsqA 122 :PFVLDASL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28444 # 1qexA.127.155 read from T0287.t06.many.frag # found chain 1qexA in template set T0287 127 :KPIMFKMSI 1qexA 156 :STSVWNYSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28445 # 2fojA.127.16 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. T0287 127 :K 2fojA 67 :S T0287 129 :IMFKMSI 2fojA 69 :ATFQFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28447 # 1ttwA.127.45 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)K127 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)M133 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1ttwA 48 :L T0287 132 :K 1ttwA 51 :F T0287 134 :SI 1ttwA 53 :RA Number of specific fragments extracted= 3 number of extra gaps= 3 total=28450 # 1mspA.127.65 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1mspA)A71 because E (beta_S) conformation "forbidden" or filtered. T0287 127 :K 1mspA 66 :E T0287 129 :IMF 1mspA 68 :VLM T0287 133 :MSI 1mspA 72 :VSC Number of specific fragments extracted= 3 number of extra gaps= 2 total=28453 # 1crzA.127.239 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 127 :KPIMFKMSI 1crzA 246 :SLNLYVMDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28454 # 1mwpA.127.62 read from T0287.t06.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)K127 (1mwpA)Q90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 128 :PIMFK 1mwpA 91 :PVTIQ T0287 134 :SI 1mwpA 97 :WC Number of specific fragments extracted= 2 number of extra gaps= 2 total=28456 # 1w0pA.127.425 read from T0287.t06.many.frag # found chain 1w0pA in training set T0287 127 :KPIMFKMSI 1w0pA 426 :APIILQSEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28457 # 1vcaA.127.106 read from T0287.t06.many.frag # found chain 1vcaA in training set T0287 127 :KPIMFKMSI 1vcaA 107 :KPITVKCSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28458 # 2awgA.127.11 read from T0287.t06.many.frag # found chain 2awgA in template set Warning: unaligning (T0287)P128 (2awgA)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2awgA)L101 because G (3-10) conformation "forbidden" or filtered. T0287 127 :K 2awgA 99 :N T0287 130 :MFKMSI 2awgA 102 :LRKKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28460 # 1iq4A.127.123 read from T0287.t06.many.frag # found chain 1iq4A in training set Warning: unaligning (T0287)K127 (1iq4A)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P128 (1iq4A)R125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (1iq4A)G126 because T (delta_L) conformation "forbidden" or filtered. T0287 130 :MFKMSI 1iq4A 127 :NYTLGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28461 # 1te0A.128.304 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)L342 Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=28462 # 1gnyA.128.104 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 128 :PIMFKMSIR 1gnyA 195 :DLTLTCTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=28463 # 1quqB.128.23 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFK 1quqB 24 :PVCFV T0287 134 :SIR 1quqB 30 :RLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28465 # 1pgl2.128.293 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)P128 (1pgl2)K294 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1pgl2)E302 because G (3-10) conformation "forbidden" or filtered. T0287 129 :IMFKMSI 1pgl2 295 :VVLKFSQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=28466 # 1dkiA.128.200 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 128 :PIMFKMSIR 1dkiA 83 :PKNLFAAIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28467 # 1l6pA.128.79 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)P128 (1l6pA)R80 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1l6pA 81 :LTLPVTIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28468 # 1dg6A.128.128 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)M130 (1dg6A)L221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 T0287 128 :PI 1dg6A 219 :PI T0287 131 :FKMSI 1dg6A 222 :LMKSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28470 # 1ddlA.128.126 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)R136 (1ddlA)T135 because G (3-10) conformation "forbidden" or filtered. T0287 128 :PIMFKMSI 1ddlA 127 :PIDVEANL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28471 # 1y8xB.128.88 read from T0287.t06.many.frag # found chain 1y8xB in template set Warning: unaligning (T0287)M133 (1y8xB)L438 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1y8xB)F440 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1y8xB)F440 T0287 128 :PIMFK 1y8xB 433 :TVLFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28472 # 1gvp.128.41 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 128 :PIMFK 1gvp 42 :PVLVK T0287 135 :IR 1gvp 49 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28474 # 1ikoP.128.80 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PI 1ikoP 110 :DV T0287 131 :FKMSIR 1ikoP 113 :FTIKFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28476 # 1wmxA.128.132 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)P128 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wmxA)W133 Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIR 1wmxA 138 :IPLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=28478 # 2d9rA.128.20 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 128 :PIM 2d9rA 21 :PIE T0287 133 :MSIR 2d9rA 26 :AIIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28480 # 1qexA.128.156 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 128 :PIMFK 1qexA 157 :TSVWN T0287 134 :SI 1qexA 163 :SI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28482 # 2bjqA.128.42 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 T0287 128 :PIMFKMS 2bjqA 43 :PIHGRAW Number of specific fragments extracted= 1 number of extra gaps= 1 total=28483 # 1flmA.128.25 read from T0287.t06.many.frag # found chain 1flmA in training set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE in next template residue (1flmA)T31 Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE at template residue (1flmA)T31 T0287 128 :PIMF 1flmA 26 :PHLV T0287 134 :SIR 1flmA 32 :WNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28485 # 1v05A.128.23 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 T0287 128 :P 1v05A 2653 :K T0287 131 :FKMSIR 1v05A 2656 :FTVDCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28487 # 1crzA.128.284 read from T0287.t06.many.frag # found chain 1crzA in template set T0287 128 :PIMFKMSIR 1crzA 291 :PQVYKVNIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28488 # 1b7yA.128.263 read from T0287.t06.many.frag # found chain 1b7yA in template set T0287 128 :PIMFKMSIR 1b7yA 264 :GAQFAVWWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28489 # 2fojA.128.17 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)P128 (2fojA)E68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I129 (2fojA)A69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2fojA)T74 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MFKM 2fojA 70 :TFQF T0287 135 :IR 2fojA 75 :VE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28491 # 1mspA.128.66 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)P128 (1mspA)K67 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMFKMSIR 1mspA 68 :VLMAVSCD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28492 # 2bzgA.128.114 read from T0287.t06.many.frag # found chain 2bzgA in template set Warning: unaligning (T0287)P128 (2bzgA)I128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (2bzgA)C133 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 2bzgA 129 :SLYC T0287 134 :SIR 2bzgA 134 :SIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28494 # 1ttwA.128.46 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)P128 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 2 number of extra gaps= 3 total=28496 # 1zsqA.128.52 read from T0287.t06.many.frag # found chain 1zsqA in template set T0287 128 :PIMFKMSIR 1zsqA 122 :PFVLDASLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28497 # 1ogoX.128.156 read from T0287.t06.many.frag # found chain 1ogoX in training set Warning: unaligning (T0287)P128 (1ogoX)G157 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1ogoX)S161 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMF 1ogoX 158 :RKF T0287 133 :MSIR 1ogoX 162 :VEFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28499 # 1mwpA.128.63 read from T0287.t06.many.frag # found chain 1mwpA in training set Warning: unaligning (T0287)M133 (1mwpA)N96 because L (left) conformation "forbidden" or filtered. T0287 128 :PIMFK 1mwpA 91 :PVTIQ T0287 134 :SIR 1mwpA 97 :WCK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28501 # 2f15A.128.21 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)P128 (2f15A)E89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28503 # 1uh4A.128.588 read from T0287.t06.many.frag # found chain 1uh4A in template set T0287 128 :PIMFKMSIR 1uh4A 589 :SHTVNVPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28504 # 2cy7A.128.305 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 128 :PIMFKMSIR 2cy7A 303 :HPPCRMSIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28505 # 1vajA.128.113 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 128 :PIMFKMSIR 1vajA 114 :PELIEGPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28506 # 1te0A.129.305 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L342 Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :E 1te0A 350 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=28508 # 1pgl2.129.294 read from T0287.t06.many.frag # found chain 1pgl2 in template set T0287 129 :IMFKMSIRE 1pgl2 295 :VVLKFSQEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28509 # 1gnyA.129.105 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 129 :IMFKMSIRE 1gnyA 196 :LTLTCTIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28510 # 1l6pA.129.80 read from T0287.t06.many.frag # found chain 1l6pA in training set T0287 129 :IMFKMSIRE 1l6pA 81 :LTLPVTINQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28511 # 1dkiA.129.201 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 129 :IMFKMSIRE 1dkiA 84 :KNLFAAIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=28512 # 1quqB.129.24 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)I129 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1quqB 26 :CFV T0287 134 :SIRE 1quqB 30 :RLEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28514 # 1ddlA.129.127 read from T0287.t06.many.frag # found chain 1ddlA in template set T0287 129 :IMFKMSIRE 1ddlA 128 :IDVEANLTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28515 # 1qexA.129.157 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1qexA 158 :SVWN T0287 134 :SI 1qexA 163 :SI T0287 137 :E 1qexA 166 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=28518 # 2d9rA.129.21 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 129 :IM 2d9rA 22 :IE T0287 133 :MSIRE 2d9rA 26 :AIIRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28520 # 1v05A.129.24 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)I129 because of BadResidue code BAD_PEPTIDE in next template residue (1v05A)S2655 Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)F131 (1v05A)F2656 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIRE 1v05A 2657 :TVDCSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28521 # 2cy7A.129.306 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 129 :IMFKMSIRE 2cy7A 304 :PPCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28522 # 1gvp.129.42 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)R136 (1gvp)D50 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :IMFK 1gvp 43 :VLVK T0287 135 :I 1gvp 49 :L T0287 137 :E 1gvp 51 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=28525 # 1ikoP.129.81 read from T0287.t06.many.frag # found chain 1ikoP in template set T0287 129 :IMFKMSIRE 1ikoP 111 :VKFTIKFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28526 # 1mspA.129.67 read from T0287.t06.many.frag # found chain 1mspA in template set T0287 129 :IMFKMSIRE 1mspA 68 :VLMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28527 # 1dg6A.129.129 read from T0287.t06.many.frag # found chain 1dg6A in training set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1dg6A)N228 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1dg6A)N228 T0287 129 :IMFKMSI 1dg6A 220 :ILLMKSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28528 # 1b7yA.129.264 read from T0287.t06.many.frag # found chain 1b7yA in template set T0287 129 :IMFKMSIRE 1b7yA 265 :AQFAVWWPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28529 # 1wmxA.129.133 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 129 :IM 1wmxA 134 :QH T0287 133 :MSIRE 1wmxA 138 :IPLRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28531 # 2fojA.129.18 read from T0287.t06.many.frag # found chain 2fojA in template set T0287 129 :IMFKMSIRE 2fojA 69 :ATFQFTVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=28532 # 2f15A.129.22 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. T0287 129 :IM 2f15A 90 :VF T0287 134 :SIR 2f15A 95 :SFN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28534 # 1ng0A.129.179 read from T0287.t06.many.frag # found chain 1ng0A in template set Warning: unaligning (T0287)K132 (1ng0A)A183 because E (beta_S) conformation "forbidden" or filtered. T0287 129 :IMF 1ng0A 180 :VTS T0287 133 :MSIRE 1ng0A 184 :LPCDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28536 # 1vajA.129.114 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M130 (1vajA)L116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)K132 (1vajA)E118 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :I 1vajA 115 :E T0287 131 :F 1vajA 117 :I T0287 133 :MSIRE 1vajA 119 :GPPEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28539 # 1ttwA.129.47 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)K132 (1ttwA)F51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0287 129 :I 1ttwA 48 :L T0287 133 :MSI 1ttwA 52 :MRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28541 # 1ntvA.129.81 read from T0287.t06.many.frag # found chain 1ntvA in training set T0287 129 :IMFKMSIRE 1ntvA 104 :LQHHHAVHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28542 # 1wyzA.129.206 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMFK 1wyzA 207 :FIQT T0287 134 :SIRE 1wyzA 212 :TVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28544 # 1wthD.129.83 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)K132 (1wthD)I87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :IMF 1wthD 84 :KTR T0287 133 :MSIR 1wthD 88 :YGCK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28546 # 2bzgA.129.115 read from T0287.t06.many.frag # found chain 2bzgA in template set T0287 129 :IMFKMSIRE 2bzgA 129 :SLYCCSIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28547 # 2bjqA.129.43 read from T0287.t06.many.frag # found chain 2bjqA in training set Warning: unaligning (T0287)S134 (2bjqA)W49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (2bjqA)D51 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (2bjqA)D51 Warning: unaligning (T0287)E137 (2bjqA)N52 because L (left) conformation "forbidden" or filtered. T0287 129 :IMFKM 2bjqA 44 :IHGRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28548 # 1crzA.129.285 read from T0287.t06.many.frag # found chain 1crzA in template set Warning: unaligning (T0287)M130 (1crzA)V293 because P (beta_P) conformation "forbidden" or filtered. T0287 129 :I 1crzA 292 :Q T0287 131 :FKMSIRE 1crzA 294 :YKVNING Number of specific fragments extracted= 2 number of extra gaps= 1 total=28550 # 2bvcA.129.40 read from T0287.t06.many.frag # found chain 2bvcA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (2bvcA)F35 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (2bvcA)F35 T0287 129 :I 2bvcA 33 :Q T0287 132 :KMSIRE 2bvcA 36 :TIPASA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28552 # 1c8nA.129.202 read from T0287.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M130 (1c8nA)Y204 because Y (epsilon') conformation "forbidden" or filtered. T0287 129 :I 1c8nA 203 :I T0287 131 :FKMSIRE 1c8nA 205 :VDVDVTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28554 # 1te0A.130.306 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)M130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28556 # 1pgl2.130.295 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)R136 (1pgl2)E302 because G (3-10) conformation "forbidden" or filtered. T0287 130 :MFKMSI 1pgl2 296 :VLKFSQ T0287 137 :EM 1pgl2 303 :EF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28558 # 1l6pA.130.81 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)E137 (1l6pA)Q89 because E (beta_S) conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1l6pA 82 :TLPVTIN T0287 138 :M 1l6pA 90 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28560 # 1gnyA.130.106 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)R136 (1gnyA)D203 because D (zeta) conformation "forbidden" or filtered. T0287 130 :MFKMSI 1gnyA 197 :TLTCTI T0287 137 :EM 1gnyA 204 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=28562 # 1dkiA.130.202 read from T0287.t06.many.frag # found chain 1dkiA in training set T0287 130 :MFKMSIREM 1dkiA 85 :NLFAAISTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28563 # 1ddlA.130.128 read from T0287.t06.many.frag # found chain 1ddlA in template set T0287 130 :MFKMSIREM 1ddlA 129 :DVEANLTNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28564 # 2cy7A.130.307 read from T0287.t06.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)M138 (2cy7A)L313 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MFKMSIRE 2cy7A 305 :PCRMSIAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28565 # 1quqB.130.25 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1quqB 26 :CFV T0287 134 :SIREM 1quqB 30 :RLEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28567 # 1vajA.130.115 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 130 :MFKMSIREM 1vajA 116 :LIEGPPEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=28568 # 2f15A.130.23 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 130 :M 2f15A 91 :F T0287 134 :SIRE 2f15A 95 :SFNN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28570 # 1qexA.130.158 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1qexA 159 :VWN T0287 134 :SIREM 1qexA 163 :SIESM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28572 # 1b7yA.130.265 read from T0287.t06.many.frag # found chain 1b7yA in template set T0287 130 :MFKMSIREM 1b7yA 266 :QFAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28573 # 1ng0A.130.180 read from T0287.t06.many.frag # found chain 1ng0A in template set T0287 130 :MFKMSIREM 1ng0A 181 :TSALPCDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28574 # 1mspA.130.68 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)M138 (1mspA)F77 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIRE 1mspA 69 :LMAVSCDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28575 # 1v05A.130.25 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE at template residue (1v05A)S2655 Warning: unaligning (T0287)I135 (1v05A)C2660 because G (3-10) conformation "forbidden" or filtered. T0287 131 :FKMS 1v05A 2656 :FTVD T0287 136 :REM 1v05A 2661 :SKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28577 # 1gvp.130.43 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M130 (1gvp)L44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 T0287 131 :FK 1gvp 45 :VK T0287 135 :IREM 1gvp 49 :LDEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28579 # 1wthD.130.84 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFKMSIR 1wthD 85 :TRIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=28581 # 1ikoP.130.82 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M130 (1ikoP)K112 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1ikoP 113 :FTIKFQEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28582 # 2fojA.130.19 read from T0287.t06.many.frag # found chain 2fojA in template set Warning: unaligning (T0287)K132 (2fojA)Q72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (2fojA)T74 because P (beta_P) conformation "forbidden" or filtered. T0287 130 :MF 2fojA 70 :TF T0287 133 :M 2fojA 73 :F T0287 135 :IREM 2fojA 75 :VERF Number of specific fragments extracted= 3 number of extra gaps= 2 total=28585 # 1c8nA.130.203 read from T0287.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M130 (1c8nA)Y204 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1c8nA 205 :VDVDVTRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28586 # 1wmxA.130.134 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 130 :M 1wmxA 135 :H T0287 133 :MSIREM 1wmxA 138 :IPLRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28588 # 2d9rA.130.22 read from T0287.t06.many.frag # found chain 2d9rA in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2d9rA)D25 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2d9rA)D25 T0287 130 :M 2d9rA 23 :E T0287 133 :MSIREM 2d9rA 26 :AIIRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28590 # 1wyzA.130.207 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 130 :MFK 1wyzA 208 :IQT T0287 134 :SIREM 1wyzA 212 :TVKDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=28592 # 1ntvA.130.82 read from T0287.t06.many.frag # found chain 1ntvA in training set T0287 130 :MFKMSIREM 1ntvA 105 :QHHHAVHEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28593 # 1ttwA.130.48 read from T0287.t06.many.frag # found chain 1ttwA in template set Warning: unaligning (T0287)M130 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)A50 Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)A50 Warning: unaligning (T0287)R136 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0287)E137 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)T58 T0287 132 :KMSI 1ttwA 51 :FMRA Number of specific fragments extracted= 1 number of extra gaps= 2 total=28594 # 1nls.130.61 read from T0287.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 T0287 130 :MFKM 1nls 62 :SAVV T0287 136 :REM 1nls 68 :PNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28596 # 1msc.130.42 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 130 :MFKMSI 1msc 43 :KVTCSV T0287 138 :M 1msc 51 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=28598 # 1gmeA.130.55 read from T0287.t06.many.frag # found chain 1gmeA in template set T0287 130 :MFKMSIREM 1gmeA 56 :VFKADLPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28599 # 1ve2A.130.194 read from T0287.t06.many.frag # found chain 1ve2A in template set T0287 130 :MFKMSIREM 1ve2A 195 :VRLGRVEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28600 # 1e2wA.130.190 read from T0287.t06.many.frag # found chain 1e2wA in training set T0287 130 :MFKMSIREM 1e2wA 191 :GFEVSIEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28601 # 1l6pA.131.82 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)D139 (1l6pA)S91 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1l6pA 83 :LPVTINQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28602 # 1pgl2.131.296 read from T0287.t06.many.frag # found chain 1pgl2 in template set T0287 131 :FKMSIREMD 1pgl2 297 :LKFSQEEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28603 # 1te0A.131.307 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 T0287 131 :FKMS 1te0A 344 :LQVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28605 # 1gnyA.131.107 read from T0287.t06.many.frag # found chain 1gnyA in training set T0287 131 :FKMSIREMD 1gnyA 198 :LTCTIDEDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28606 # 2cy7A.131.308 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 131 :FKMSIREMD 2cy7A 306 :CRMSIAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28607 # 2f15A.131.24 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)S93 Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :D 2f15A 100 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=28609 # 1ng0A.131.181 read from T0287.t06.many.frag # found chain 1ng0A in template set T0287 131 :FKMSIREMD 1ng0A 182 :SALPCDEFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28610 # 1vajA.131.116 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 131 :FK 1vajA 117 :IE T0287 134 :SIREMD 1vajA 120 :PPEERP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28612 # 1bco.131.285 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)M133 (1bco)F535 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1bco 533 :VR T0287 134 :SIREMD 1bco 536 :DPQQLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28614 # 1qexA.131.159 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1qexA 160 :WN T0287 134 :SIREMD 1qexA 163 :SIESMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28616 # 1ddlA.131.129 read from T0287.t06.many.frag # found chain 1ddlA in template set T0287 131 :FKMSIREMD 1ddlA 130 :VEANLTNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28617 # 1mspA.131.69 read from T0287.t06.many.frag # found chain 1mspA in template set T0287 131 :FKMSIREMD 1mspA 70 :MAVSCDTFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28618 # 1c8nA.131.204 read from T0287.t06.many.frag # found chain 1c8nA in template set T0287 131 :FKMSIREMD 1c8nA 205 :VDVDVTRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28619 # 1dkiA.131.203 read from T0287.t06.many.frag # found chain 1dkiA in training set Warning: unaligning (T0287)M138 (1dkiA)R93 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSIRE 1dkiA 86 :LFAAIST T0287 139 :D 1dkiA 94 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=28621 # 1c96A.131.309 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)K132 (1c96A)E312 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 T0287 131 :F 1c96A 311 :I T0287 133 :MSIREM 1c96A 313 :INLSEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28623 # 1e2wA.131.191 read from T0287.t06.many.frag # found chain 1e2wA in training set T0287 131 :FKMSIREMD 1e2wA 192 :FEVSIEKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28624 # 1wthD.131.85 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FKMSIR 1wthD 86 :RIYGCK T0287 138 :M 1wthD 93 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=28626 # 1msc.131.43 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 T0287 131 :FKMSI 1msc 44 :VTCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28628 # 1b7yA.131.266 read from T0287.t06.many.frag # found chain 1b7yA in template set Warning: unaligning (T0287)D139 (1b7yA)G275 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIREM 1b7yA 267 :FAVWWPEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28629 # 1wyzA.131.208 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1wyzA 209 :QT T0287 134 :SIREMD 1wyzA 212 :TVKDWK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28631 # 1xt5A.131.72 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)F131 because of BadResidue code BAD_PEPTIDE at template residue (1xt5A)Y73 Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xt5A)L81 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EM 1xt5A 79 :DF Number of specific fragments extracted= 2 number of extra gaps= 3 total=28633 # 1nls.131.62 read from T0287.t06.many.frag # found chain 1nls in training set Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE in next template residue (1nls)Y67 Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE at template residue (1nls)Y67 T0287 131 :FKM 1nls 63 :AVV T0287 136 :REMD 1nls 68 :PNAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28635 # 1gvp.131.44 read from T0287.t06.many.frag # found chain 1gvp in training set Warning: unaligning (T0287)M133 because of BadResidue code BAD_PEPTIDE in next template residue (1gvp)T48 Warning: unaligning (T0287)S134 because of BadResidue code BAD_PEPTIDE at template residue (1gvp)T48 Warning: unaligning (T0287)M138 (1gvp)G52 because T (delta_L) conformation "forbidden" or filtered. T0287 131 :FK 1gvp 45 :VK T0287 135 :IRE 1gvp 49 :LDE T0287 139 :D 1gvp 53 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=28638 # 1gmeA.131.56 read from T0287.t06.many.frag # found chain 1gmeA in template set Warning: unaligning (T0287)E137 (1gmeA)G63 because L (left) conformation "forbidden" or filtered. T0287 131 :FKMSIR 1gmeA 57 :FKADLP T0287 138 :MD 1gmeA 64 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28640 # 1wmxA.131.135 read from T0287.t06.many.frag # found chain 1wmxA in template set Warning: unaligning (T0287)F131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)K137 Warning: unaligning (T0287)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)K137 T0287 133 :MSIREMD 1wmxA 138 :IPLRDLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=28641 # 1v05A.131.26 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 131 :FKMSIREMD 1v05A 2656 :FTVDCSKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28642 # 1s28A.131.53 read from T0287.t06.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1s28A)V60 because P (beta_P) conformation "forbidden" or filtered. T0287 131 :FKMSI 1s28A 54 :FLSDI T0287 138 :MD 1s28A 61 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=28644 # 1quqB.131.26 read from T0287.t06.many.frag # found chain 1quqB in template set Warning: unaligning (T0287)M133 (1quqB)G29 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1quqB 27 :FV T0287 134 :SIREMD 1quqB 30 :RLEKIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28646 # 1kq1A.131.31 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 131 :FK 1kq1A 32 :MK T0287 134 :SIRE 1kq1A 35 :VIEE T0287 139 :D 1kq1A 40 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=28649 # 1gpqA.131.80 read from T0287.t06.many.frag # found chain 1gpqA in template set T0287 131 :FKMSIREMD 1gpqA 81 :LFSTIDEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28650 # 1l6pA.132.83 read from T0287.t06.many.frag # found chain 1l6pA in training set T0287 132 :KMSIREMDS 1l6pA 84 :PVTINQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28651 # 1bco.132.286 read from T0287.t06.many.frag # found chain 1bco in template set T0287 132 :KMSIREMDS 1bco 534 :RFDPQQLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28652 # 2cy7A.132.309 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 132 :KMSIREMDS 2cy7A 307 :RMSIAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28653 # 2f15A.132.25 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)K132 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)S93 Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIRE 2f15A 95 :SFNN T0287 139 :DS 2f15A 100 :ST Number of specific fragments extracted= 2 number of extra gaps= 2 total=28655 # 1gnyA.132.108 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S134 (1gnyA)T201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1gnyA)D203 because D (zeta) conformation "forbidden" or filtered. T0287 132 :KM 1gnyA 199 :TC T0287 135 :I 1gnyA 202 :I T0287 137 :EMDS 1gnyA 204 :EDDD Number of specific fragments extracted= 3 number of extra gaps= 2 total=28658 # 1te0A.132.308 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 T0287 132 :KMS 1te0A 345 :QVT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28660 # 1vajA.132.117 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S134 (1vajA)P120 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :K 1vajA 118 :E T0287 135 :IREMDS 1vajA 121 :PEERPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28662 # 1ng0A.132.182 read from T0287.t06.many.frag # found chain 1ng0A in template set T0287 132 :KMSIREMDS 1ng0A 183 :ALPCDEFSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28663 # 1pgl2.132.297 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)S140 (1pgl2)T306 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1pgl2 298 :KFSQEEFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28664 # 1e2wA.132.192 read from T0287.t06.many.frag # found chain 1e2wA in training set T0287 132 :KMSIREMDS 1e2wA 193 :EVSIEKANG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28665 # 1xt5A.132.73 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :KMSI 1xt5A 74 :KESF T0287 137 :EMD 1xt5A 79 :DFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28667 # 1h6lA.132.171 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSI 1h6lA 200 :KVRA T0287 137 :EMDS 1h6lA 205 :KMNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28669 # 1luzA.132.15 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. T0287 132 :K 1luzA 16 :K T0287 134 :SI 1luzA 18 :RV T0287 137 :EM 1luzA 21 :EK Number of specific fragments extracted= 3 number of extra gaps= 3 total=28672 # 1c96A.132.310 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)M138 (1c96A)L318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 132 :KMSIRE 1c96A 312 :EINLSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28673 # 1qexA.132.160 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)R136 (1qexA)E165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1qexA)F168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 132 :KMSI 1qexA 161 :NYSI T0287 137 :EM 1qexA 166 :SM Number of specific fragments extracted= 2 number of extra gaps= 2 total=28675 # 1hx6A.132.359 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)K132 (1hx6A)V361 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1hx6A)N368 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1hx6A)Q369 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIREM 1hx6A 362 :VNPKTV Number of specific fragments extracted= 1 number of extra gaps= 2 total=28676 # 1kq1A.132.32 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :KMSIRE 1kq1A 33 :KGVIEE T0287 139 :DS 1kq1A 40 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28678 # 1wyzA.132.209 read from T0287.t06.many.frag # found chain 1wyzA in template set Warning: unaligning (T0287)M133 (1wyzA)R211 because Y (epsilon') conformation "forbidden" or filtered. T0287 132 :K 1wyzA 210 :T T0287 134 :SIREMDS 1wyzA 212 :TVKDWKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28680 # 1y4wA.132.335 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 132 :KM 1y4wA 355 :HM T0287 135 :IREM 1y4wA 358 :LKTI T0287 140 :S 1y4wA 363 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=28683 # 2airB.132.123 read from T0287.t06.many.frag # found chain 2airB in template set T0287 132 :KMSIREMDS 2airB 124 :SFAVRKRAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28684 # 1s28A.132.54 read from T0287.t06.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)E137 (1s28A)V60 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIR 1s28A 55 :LSDIG T0287 138 :MDS 1s28A 61 :IDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28686 # 1wthD.132.86 read from T0287.t06.many.frag # found chain 1wthD in template set T0287 132 :KMSIREMDS 1wthD 87 :IYGCKHFSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28687 # 1msc.132.44 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 T0287 132 :KMSI 1msc 45 :TCSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28689 # 1gpqA.132.81 read from T0287.t06.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. T0287 132 :KMSIREMD 1gpqA 82 :FSTIDEKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28690 # 1ddlA.132.130 read from T0287.t06.many.frag # found chain 1ddlA in template set Warning: unaligning (T0287)D139 (1ddlA)N138 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1ddlA 131 :EANLTNL T0287 140 :S 1ddlA 139 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=28692 # 1c8nA.132.205 read from T0287.t06.many.frag # found chain 1c8nA in template set Warning: unaligning (T0287)M133 (1c8nA)V207 because P (beta_P) conformation "forbidden" or filtered. T0287 132 :K 1c8nA 206 :D T0287 134 :SIREMDS 1c8nA 208 :DVTRFDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28694 # 1mspA.132.70 read from T0287.t06.many.frag # found chain 1mspA in template set Warning: unaligning (T0287)D139 (1mspA)N78 because D (zeta) conformation "forbidden" or filtered. T0287 132 :KMSIREM 1mspA 71 :AVSCDTF T0287 140 :S 1mspA 79 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28696 # 1s3rA.132.261 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 132 :KMSIREMDS 1s3rA 259 :TASVDSPNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28697 # 1ve2A.132.196 read from T0287.t06.many.frag # found chain 1ve2A in template set Warning: unaligning (T0287)M138 (1ve2A)L203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1ve2A)P204 because C (cis) conformation "forbidden" or filtered. T0287 132 :KMSIRE 1ve2A 197 :LGRVED T0287 140 :S 1ve2A 205 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28699 # 2ayh.132.120 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)K132 (2ayh)N121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2ayh)V127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIR 2ayh 122 :YYTN Number of specific fragments extracted= 1 number of extra gaps= 2 total=28700 # 1bco.133.287 read from T0287.t06.many.frag # found chain 1bco in template set T0287 133 :MSIREMDSQ 1bco 535 :FDPQQLHST Number of specific fragments extracted= 1 number of extra gaps= 0 total=28701 # 1l6pA.133.84 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)S140 (1l6pA)A92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1l6pA 85 :VTINQAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28702 # 2f15A.133.26 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M133 (2f15A)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIR 2f15A 95 :SFN T0287 139 :DSQ 2f15A 100 :STK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28704 # 1luzA.133.16 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)M133 (1luzA)G17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SI 1luzA 18 :RV T0287 137 :EMDS 1luzA 21 :EKDY Number of specific fragments extracted= 2 number of extra gaps= 3 total=28706 # 1h6lA.133.172 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSI 1h6lA 201 :VRA T0287 137 :EMDSQ 1h6lA 205 :KMNSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28708 # 2cy7A.133.310 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 133 :MSIREMDSQ 2cy7A 308 :MSIAELDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28709 # 1xt5A.133.74 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 133 :MSI 1xt5A 75 :ESF T0287 137 :EMDSQ 1xt5A 79 :DFLGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28711 # 1vajA.133.118 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)M133 (1vajA)G119 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMDSQ 1vajA 120 :PPEERPRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28712 # 1y4wA.133.336 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1y4wA)S363 because L (left) conformation "forbidden" or filtered. T0287 133 :M 1y4wA 356 :M T0287 135 :IREM 1y4wA 358 :LKTI T0287 141 :Q 1y4wA 364 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=28715 # 1hx6A.133.360 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)S140 (1hx6A)Q369 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1hx6A 362 :VNPKTVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28716 # 1s3rA.133.262 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 133 :MSIREMDSQ 1s3rA 260 :ASVDSPNSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28717 # 1te0A.133.309 read from T0287.t06.many.frag # found chain 1te0A in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)Q349 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q349 Warning: unaligning (T0287)D139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0287)S140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0287)Q141 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0287 133 :MS 1te0A 346 :VT T0287 137 :EM 1te0A 350 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28719 # 1gnyA.133.109 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1gnyA 200 :CTIDEDD T0287 141 :Q 1gnyA 208 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=28721 # 1kq1A.133.33 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M133 (1kq1A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 140 :SQ 1kq1A 41 :KY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28723 # 1c96A.133.311 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 133 :MSIREM 1c96A 313 :INLSEL T0287 141 :Q 1c96A 321 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=28725 # 2airB.133.124 read from T0287.t06.many.frag # found chain 2airB in template set Warning: unaligning (T0287)E137 (2airB)K129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 133 :MSIR 2airB 125 :FAVR T0287 139 :D 2airB 131 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=28727 # 1oygA.133.170 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 T0287 133 :MSIRE 1oygA 197 :VNVSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28729 # 1e2wA.133.193 read from T0287.t06.many.frag # found chain 1e2wA in training set T0287 133 :MSIREMDSQ 1e2wA 194 :VSIEKANGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28730 # 1zpwX.133.63 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E137 (1zpwX)P68 because P (beta_P) conformation "forbidden" or filtered. T0287 133 :MSIR 1zpwX 64 :LRIY T0287 138 :MDSQ 1zpwX 69 :VAGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28732 # 1ng0A.133.183 read from T0287.t06.many.frag # found chain 1ng0A in template set T0287 133 :MSIREMDSQ 1ng0A 184 :LPCDEFSNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28733 # 1pgl2.133.298 read from T0287.t06.many.frag # found chain 1pgl2 in template set Warning: unaligning (T0287)I135 (1pgl2)Q301 because G (3-10) conformation "forbidden" or filtered. T0287 133 :MS 1pgl2 299 :FS T0287 136 :REMDSQ 1pgl2 302 :EEFLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28735 # 1b66A.133.124 read from T0287.t06.many.frag # found chain 1b66A in template set T0287 133 :MSIREMDSQ 1b66A 129 :VKVYETDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28736 # 1msc.133.45 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 T0287 133 :MSI 1msc 46 :CSV T0287 138 :MD 1msc 51 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28738 # 1mkfA.133.319 read from T0287.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSIREM 1mkfA 320 :LQMTSH T0287 141 :Q 1mkfA 328 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28740 # 1obdA.133.219 read from T0287.t06.many.frag # found chain 1obdA in training set T0287 133 :MSIREMDSQ 1obdA 220 :FGIDEKTNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28741 # 1gpqA.133.82 read from T0287.t06.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1gpqA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0287 133 :MSIREMD 1gpqA 83 :STIDEKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28742 # 2ayh.133.121 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M133 (2ayh)Y122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SI 2ayh 123 :YT T0287 137 :EM 2ayh 126 :GV T0287 141 :Q 2ayh 130 :H Number of specific fragments extracted= 3 number of extra gaps= 3 total=28745 # 1qexA.133.161 read from T0287.t06.many.frag # found chain 1qexA in template set Warning: unaligning (T0287)M133 (1qexA)Y162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1qexA)G169 because S (epsilon) conformation "forbidden" or filtered. T0287 134 :SIREMD 1qexA 163 :SIESMF T0287 141 :Q 1qexA 170 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=28747 # 1wthD.133.87 read from T0287.t06.many.frag # found chain 1wthD in template set Warning: unaligning (T0287)E137 (1wthD)H92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1wthD)S94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wthD)I104 T0287 133 :MSIR 1wthD 88 :YGCK T0287 138 :M 1wthD 93 :F T0287 140 :S 1wthD 95 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=28750 # 1s28A.133.55 read from T0287.t06.many.frag # found chain 1s28A in template set Warning: unaligning (T0287)R136 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1s28A)L64 because T (delta_L) conformation "forbidden" or filtered. T0287 133 :MSI 1s28A 56 :SDI T0287 137 :EMD 1s28A 60 :VID Number of specific fragments extracted= 2 number of extra gaps= 2 total=28752 # 1bco.134.288 read from T0287.t06.many.frag # found chain 1bco in template set T0287 134 :SIREMDSQI 1bco 536 :DPQQLHSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28753 # 1luzA.134.17 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIREMD 1luzA 18 :RVYEKD T0287 142 :I 1luzA 26 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=28755 # 1h6lA.134.173 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)E137 (1h6lA)K205 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIR 1h6lA 202 :RAF T0287 138 :MDSQI 1h6lA 206 :MNSQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28757 # 2f15A.134.27 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 134 :SIRE 2f15A 95 :SFNN T0287 139 :DSQI 2f15A 100 :STKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28759 # 1xt5A.134.75 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREMD 1xt5A 76 :SFGDFL T0287 141 :QI 1xt5A 83 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28761 # 1oygA.134.171 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 134 :SIRE 1oygA 198 :NVSA T0287 139 :DS 1oygA 203 :DS Number of specific fragments extracted= 2 number of extra gaps= 2 total=28763 # 1zpwX.134.64 read from T0287.t06.many.frag # found chain 1zpwX in template set T0287 134 :SIREMDSQI 1zpwX 65 :RIYPVAGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28764 # 1vajA.134.119 read from T0287.t06.many.frag # found chain 1vajA in template set Warning: unaligning (T0287)S134 (1vajA)P120 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1vajA 121 :PEERPRKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28765 # 1hx6A.134.361 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)D139 (1hx6A)N368 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SIREM 1hx6A 363 :NPKTV T0287 140 :SQI 1hx6A 369 :QNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28767 # 1y4wA.134.337 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)S134 (1y4wA)A357 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (1y4wA)T360 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 135 :IR 1y4wA 358 :LK T0287 138 :M 1y4wA 361 :I T0287 140 :SQI 1y4wA 363 :SKA Number of specific fragments extracted= 3 number of extra gaps= 3 total=28770 # 1s3rA.134.263 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SIR 1s3rA 261 :SVD T0287 138 :MDSQI 1s3rA 265 :PNSPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28772 # 2cy7A.134.311 read from T0287.t06.many.frag # found chain 2cy7A in template set T0287 134 :SIREMDSQI 2cy7A 309 :SIAELDPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28773 # 1l6pA.134.85 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)S140 (1l6pA)A92 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :SIREMD 1l6pA 86 :TINQAS T0287 141 :QI 1l6pA 93 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28775 # 1b66A.134.125 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1b66A 130 :KVYE T0287 139 :DSQI 1b66A 135 :DNNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28777 # 1obdA.134.220 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1obdA 221 :GIDEKT T0287 141 :QI 1obdA 228 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28779 # 2airB.134.125 read from T0287.t06.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (2airB)D133 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 2airB 126 :AVRK T0287 139 :D 2airB 131 :A T0287 142 :I 2airB 134 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=28782 # 1mkfA.134.320 read from T0287.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SIREMD 1mkfA 321 :QMTSHD T0287 141 :QI 1mkfA 328 :VW Number of specific fragments extracted= 2 number of extra gaps= 1 total=28784 # 1f00I.134.95 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)Q141 (1f00I)N760 because D (zeta) conformation "forbidden" or filtered. T0287 134 :SIREMDS 1f00I 753 :TLTIDDG T0287 142 :I 1f00I 761 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28786 # 1l4dB.134.73 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIR 1l4dB 99 :EVI T0287 138 :MDSQI 1l4dB 103 :FASDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28788 # 1gpqA.134.83 read from T0287.t06.many.frag # found chain 1gpqA in template set Warning: unaligning (T0287)S140 (1gpqA)S90 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1gpqA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SIREMD 1gpqA 84 :TIDEKT T0287 142 :I 1gpqA 92 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28790 # 1msc.134.46 read from T0287.t06.many.frag # found chain 1msc in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q50 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q50 Warning: unaligning (T0287)M138 (1msc)S51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE in next template residue (1msc)Q54 Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE at template residue (1msc)Q54 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1msc)N55 T0287 134 :SI 1msc 47 :SV T0287 139 :D 1msc 52 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=28792 # 1kq1A.134.34 read from T0287.t06.many.frag # found chain 1kq1A in training set Warning: unaligning (T0287)M138 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :SIRE 1kq1A 35 :VIEE T0287 140 :SQI 1kq1A 41 :KYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28794 # 1thtA.134.156 read from T0287.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 134 :SIRE 1thtA 157 :PIDE T0287 140 :SQI 1thtA 163 :NDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28796 # 1olzA.134.325 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1olzA)K333 because E (beta_S) conformation "forbidden" or filtered. T0287 134 :SI 1olzA 326 :TV T0287 137 :EM 1olzA 329 :QS T0287 140 :S 1olzA 332 :T T0287 142 :I 1olzA 334 :W Number of specific fragments extracted= 4 number of extra gaps= 3 total=28800 # 1c96A.134.312 read from T0287.t06.many.frag # found chain 1c96A in template set Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE in next template residue (1c96A)P320 Warning: unaligning (T0287)S140 because of BadResidue code BAD_PEPTIDE at template residue (1c96A)P320 T0287 134 :SIREM 1c96A 314 :NLSEL T0287 141 :QI 1c96A 321 :HI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28802 # 1hjrA.134.16 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. T0287 134 :S 1hjrA 17 :V T0287 140 :S 1hjrA 23 :R T0287 142 :I 1hjrA 25 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28805 # 1k3bA.134.81 read from T0287.t06.many.frag # found chain 1k3bA in template set T0287 134 :SIREMDSQI 1k3bA 82 :KYKEEGSKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28806 # 1tzlA.134.285 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 134 :S 1tzlA 287 :V T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :I 1tzlA 295 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=28810 # 1gnyA.134.110 read from T0287.t06.many.frag # found chain 1gnyA in training set Warning: unaligning (T0287)S140 (1gnyA)D207 because L (left) conformation "forbidden" or filtered. T0287 134 :SIREMD 1gnyA 201 :TIDEDD T0287 141 :QI 1gnyA 208 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28812 # 2ayh.134.122 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 134 :SI 2ayh 123 :YT T0287 138 :M 2ayh 127 :V T0287 141 :QI 2ayh 130 :HE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28815 # 1bco.135.289 read from T0287.t06.many.frag # found chain 1bco in template set T0287 135 :IREMDSQIE 1bco 537 :PQQLHSTVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28816 # 1xt5A.135.76 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :I 1xt5A 77 :F T0287 137 :EMD 1xt5A 79 :DFL T0287 141 :QIE 1xt5A 83 :RAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=28819 # 1h6lA.135.174 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :I 1h6lA 203 :A T0287 137 :EMDSQIE 1h6lA 205 :KMNSQTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28821 # 2f15A.135.28 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2f15A)P104 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IR 2f15A 96 :FN T0287 139 :DSQI 2f15A 100 :STKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28823 # 1luzA.135.18 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1luzA)Y27 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :I 1luzA 19 :V T0287 137 :EMD 1luzA 21 :EKD T0287 141 :QI 1luzA 25 :AL Number of specific fragments extracted= 3 number of extra gaps= 3 total=28826 # 1oygA.135.172 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 135 :IRE 1oygA 199 :VSA T0287 139 :DS 1oygA 203 :DS T0287 143 :E 1oygA 207 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=28829 # 1zpwX.135.65 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E137 (1zpwX)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1zpwX)E74 because E (beta_S) conformation "forbidden" or filtered. T0287 135 :IR 1zpwX 66 :IY T0287 138 :MD 1zpwX 69 :VA T0287 141 :QI 1zpwX 72 :QV Number of specific fragments extracted= 3 number of extra gaps= 3 total=28832 # 1hx6A.135.362 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMDS 1hx6A 364 :PKTVNQ T0287 142 :I 1hx6A 371 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=28834 # 1hjrA.135.17 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)R19 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 T0287 139 :DSQI 1hjrA 22 :GRQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=28835 # 1vajA.135.120 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 135 :IREMDSQIE 1vajA 121 :PEERPRKIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28836 # 1f00I.135.96 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E143 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IREMDSQI 1f00I 754 :LTIDDGNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28837 # 1olzA.135.326 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 135 :I 1olzA 327 :V T0287 137 :EM 1olzA 329 :QS T0287 140 :SQIE 1olzA 332 :TKWV Number of specific fragments extracted= 3 number of extra gaps= 2 total=28840 # 1s3rA.135.264 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMD 1s3rA 262 :VDSPN T0287 141 :QIE 1s3rA 268 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28842 # 2d0oA.135.474 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IREMD 2d0oA 475 :LRHED T0287 141 :QIE 2d0oA 481 :SVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28844 # 1l4dB.135.74 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IR 1l4dB 100 :VI T0287 138 :MDSQIE 1l4dB 103 :FASDAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28846 # 1y4wA.135.338 read from T0287.t06.many.frag # found chain 1y4wA in training set T0287 135 :IREMDSQIE 1y4wA 358 :LKTIGSKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28847 # 1mkfA.135.321 read from T0287.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)Q141 (1mkfA)V328 because D (zeta) conformation "forbidden" or filtered. T0287 135 :IREMDS 1mkfA 322 :MTSHDG T0287 142 :IE 1mkfA 329 :WT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28849 # 1obdA.135.221 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 135 :IREMD 1obdA 222 :IDEKT T0287 141 :QIE 1obdA 228 :EII Number of specific fragments extracted= 2 number of extra gaps= 1 total=28851 # 1b66A.135.126 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IRE 1b66A 131 :VYE T0287 139 :DSQIE 1b66A 135 :DNNIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28853 # 1tzlA.135.286 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)I135 because of BadResidue code BAD_PEPTIDE in next template residue (1tzlA)N289 Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1tzlA 290 :ALNS T0287 142 :IE 1tzlA 295 :IE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28855 # 1obfO.135.221 read from T0287.t06.many.frag # found chain 1obfO in training set Warning: unaligning (T0287)S140 (1obfO)G227 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1obfO)N230 because Y (epsilon') conformation "forbidden" or filtered. T0287 135 :IREMD 1obfO 222 :LPELD T0287 141 :QI 1obfO 228 :KL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28857 # 1k3bA.135.82 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 135 :IREM 1k3bA 83 :YKEE T0287 140 :SQIE 1k3bA 88 :SKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28859 # 1thtA.135.157 read from T0287.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)P162 Warning: unaligning (T0287)D139 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)P162 T0287 135 :IRE 1thtA 158 :IDE T0287 140 :SQIE 1thtA 163 :NDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28861 # 2c5qA.135.140 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 135 :IREMDSQIE 2c5qA 141 :SCAPKAVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28862 # 2ayh.135.123 read from T0287.t06.many.frag # found chain 2ayh in training set T0287 135 :IREMDSQIE 2ayh 124 :TNGVGGHEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28863 # 2airB.135.126 read from T0287.t06.many.frag # found chain 2airB in template set Warning: unaligning (T0287)M138 (2airB)R130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2airB)N132 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IRE 2airB 127 :VRK T0287 139 :D 2airB 131 :A T0287 141 :QIE 2airB 133 :DIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=28866 # 2cy7A.135.312 read from T0287.t06.many.frag # found chain 2cy7A in template set Warning: unaligning (T0287)M138 (2cy7A)L313 because P (beta_P) conformation "forbidden" or filtered. T0287 135 :IRE 2cy7A 310 :IAE T0287 139 :DSQIE 2cy7A 314 :DPSIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28868 # 1d3yA.135.98 read from T0287.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)R136 (1d3yA)T168 because G (3-10) conformation "forbidden" or filtered. T0287 135 :I 1d3yA 167 :C T0287 137 :EMDSQIE 1d3yA 169 :KLGTGAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28870 # 1xmtA.135.29 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IR 1xmtA 30 :MR T0287 140 :SQIE 1xmtA 35 :KVMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28872 # 1l6pA.135.86 read from T0287.t06.many.frag # found chain 1l6pA in training set Warning: unaligning (T0287)Q141 (1l6pA)G93 because T (delta_L) conformation "forbidden" or filtered. T0287 135 :IREMDS 1l6pA 87 :INQASA T0287 142 :IE 1l6pA 94 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28874 # 1bco.136.290 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1bco 538 :QQLHSTV T0287 144 :L 1bco 546 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=28876 # 1xt5A.136.77 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)R136 (1xt5A)G78 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1xt5A 79 :DFLGRASV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28877 # 1oygA.136.173 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)E143 (1oygA)N207 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDS 1oygA 200 :SASDS T0287 144 :L 1oygA 208 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=28879 # 1h6lA.136.175 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)R136 (1h6lA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMD 1h6lA 205 :KMN T0287 141 :QIEL 1h6lA 209 :QTEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28881 # 1hjrA.136.18 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)R19 Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL Number of specific fragments extracted= 1 number of extra gaps= 2 total=28882 # 2f15A.136.29 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. T0287 136 :RE 2f15A 97 :NN T0287 139 :DSQIEL 2f15A 100 :STKIPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28884 # 1luzA.136.19 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)R136 (1luzA)Y20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1luzA)D23 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1luzA 21 :EK T0287 142 :IEL 1luzA 26 :LYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28886 # 1zpwX.136.66 read from T0287.t06.many.frag # found chain 1zpwX in template set T0287 136 :REMDSQIEL 1zpwX 67 :YPVAGQVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28887 # 1f00I.136.97 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)E137 (1f00I)I756 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :R 1f00I 755 :T T0287 138 :MDSQIEL 1f00I 757 :DDGNIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28889 # 1olzA.136.327 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)R136 (1olzA)E328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EM 1olzA 329 :QS T0287 140 :SQIEL 1olzA 332 :TKWVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=28891 # 2d0oA.136.475 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 136 :REMDSQIEL 2d0oA 476 :RHEDGSVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28892 # 1obdA.136.222 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 136 :REMD 1obdA 223 :DEKT T0287 141 :QIEL 1obdA 228 :EIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28894 # 2c5qA.136.141 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 136 :REMDSQIEL 2c5qA 142 :CAPKAVVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28895 # 1hx6A.136.363 read from T0287.t06.many.frag # found chain 1hx6A in training set T0287 136 :REMDSQIEL 1hx6A 365 :KTVNQNARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28896 # 1mkfA.136.322 read from T0287.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)E143 (1mkfA)T330 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1mkfA 323 :TSHDGVW T0287 144 :L 1mkfA 331 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=28898 # 1vajA.136.121 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 136 :REMDSQIEL 1vajA 122 :EERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28899 # 1s3rA.136.265 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)E137 (1s3rA)S264 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :R 1s3rA 263 :D T0287 138 :MDSQIEL 1s3rA 265 :PNSPSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28901 # 1l4dB.136.75 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1l4dB)F103 because P (beta_P) conformation "forbidden" or filtered. T0287 136 :R 1l4dB 101 :I T0287 139 :DSQIEL 1l4dB 104 :ASDATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28903 # 1r6wA.136.12 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 136 :REMDSQIE 1r6wA 11 :IPMDAGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28904 # 1b66A.136.127 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)E143 (1b66A)V139 because E (beta_S) conformation "forbidden" or filtered. T0287 136 :REMDSQI 1b66A 132 :YETDNNI T0287 144 :L 1b66A 140 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28906 # 1k3bA.136.83 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)M138 (1k3bA)E86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. T0287 136 :RE 1k3bA 84 :KE T0287 140 :SQIEL 1k3bA 88 :SKVTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28908 # 1ru3A.136.336 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)R136 (1ru3A)R337 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1ru3A 338 :KGDMHVEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28909 # 2ayh.136.124 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)R136 (2ayh)N125 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E137 (2ayh)G126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :M 2ayh 127 :V T0287 140 :SQIEL 2ayh 129 :GHEKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=28911 # 1rv9A.136.187 read from T0287.t06.many.frag # found chain 1rv9A in training set T0287 136 :REMDSQIEL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28912 # 1tzlA.136.287 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)R136 because of BadResidue code BAD_PEPTIDE at template residue (1tzlA)N289 Warning: unaligning (T0287)D139 (1tzlA)N292 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EM 1tzlA 290 :AL T0287 140 :S 1tzlA 293 :S T0287 142 :IE 1tzlA 295 :IE Number of specific fragments extracted= 3 number of extra gaps= 4 total=28915 # 1q67A.136.184 read from T0287.t06.many.frag # found chain 1q67A in template set Warning: unaligning (T0287)R136 (1q67A)E185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1q67A)D188 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EM 1q67A 186 :VK T0287 140 :SQIEL 1q67A 189 :ELVII Number of specific fragments extracted= 2 number of extra gaps= 2 total=28917 # 1xmtA.136.30 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 136 :REM 1xmtA 31 :RNN T0287 140 :SQIEL 1xmtA 35 :KVMDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28919 # 1y4wA.136.339 read from T0287.t06.many.frag # found chain 1y4wA in training set Warning: unaligning (T0287)D139 (1y4wA)G362 because L (left) conformation "forbidden" or filtered. T0287 136 :REM 1y4wA 359 :KTI T0287 140 :SQIEL 1y4wA 363 :SKATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28921 # 1uekA.136.41 read from T0287.t06.many.frag # found chain 1uekA in training set Warning: unaligning (T0287)Q141 (1uekA)G47 because S (epsilon) conformation "forbidden" or filtered. T0287 136 :REMDS 1uekA 42 :EPVSS T0287 142 :IEL 1uekA 48 :LHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28923 # 1d3yA.136.99 read from T0287.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)D139 (1d3yA)G171 because S (epsilon) conformation "forbidden" or filtered. T0287 136 :REM 1d3yA 168 :TKL T0287 140 :SQIEL 1d3yA 172 :TGAYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28925 # 1bco.137.291 read from T0287.t06.many.frag # found chain 1bco in template set T0287 137 :EMDSQIELY 1bco 539 :QLHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28926 # 1hjrA.137.19 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E137 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)V21 Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :Y 1hjrA 28 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=28928 # 1xt5A.137.78 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)M138 (1xt5A)F80 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1xt5A)V86 because D (zeta) conformation "forbidden" or filtered. T0287 137 :E 1xt5A 79 :D T0287 139 :DSQIE 1xt5A 81 :LGRAS T0287 145 :Y 1xt5A 87 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=28931 # 2c5qA.137.142 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 137 :EMDSQIELY 2c5qA 143 :APKAVVKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28932 # 1f00I.137.98 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)S140 (1f00I)G759 because G (3-10) conformation "forbidden" or filtered. T0287 137 :EMD 1f00I 756 :IDD T0287 141 :QIELY 1f00I 760 :NIEIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28934 # 2d0oA.137.476 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 137 :EMDSQIELY 2d0oA 477 :HEDGSVQFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28935 # 1h6lA.137.176 read from T0287.t06.many.frag # found chain 1h6lA in training set T0287 137 :EMDSQIELY 1h6lA 205 :KMNSQTEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28936 # 1oygA.137.174 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 137 :E 1oygA 201 :A T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN Number of specific fragments extracted= 3 number of extra gaps= 2 total=28939 # 1r6wA.137.13 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 T0287 137 :EMDSQIE 1r6wA 12 :PMDAGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28940 # 1olzA.137.328 read from T0287.t06.many.frag # found chain 1olzA in template set T0287 137 :EMDSQIELY 1olzA 329 :QSHTKWVRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28941 # 1zpwX.137.67 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)E137 (1zpwX)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MD 1zpwX 69 :VA T0287 141 :QIELY 1zpwX 72 :QVEVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28943 # 2f15A.137.30 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)E137 (2f15A)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2f15A)P104 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQI 2f15A 99 :WSTKI T0287 144 :LY 2f15A 105 :LI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28945 # 1obdA.137.223 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1obdA)E228 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMD 1obdA 224 :EKT T0287 142 :IELY 1obdA 229 :IILV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28947 # 1rv9A.137.188 read from T0287.t06.many.frag # found chain 1rv9A in training set T0287 137 :EMDSQIELY 1rv9A 189 :EAATAFEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28948 # 1luzA.137.20 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1luzA 21 :EKDY T0287 142 :IELY 1luzA 26 :LYIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28950 # 1l4dB.137.76 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)E137 (1l4dB)D102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1l4dB)A104 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :M 1l4dB 103 :F T0287 140 :SQIELY 1l4dB 105 :SDATIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=28952 # 1s3rA.137.266 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 137 :EMDSQIELY 1s3rA 264 :SPNSPSALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28953 # 1hx6A.137.364 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)E137 (1hx6A)T366 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. T0287 138 :MDS 1hx6A 367 :VNQ T0287 142 :IELY 1hx6A 371 :ARLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28955 # 1ru3A.137.337 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 137 :EMDSQIEL 1ru3A 338 :KGDMHVEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28956 # 1mkfA.137.323 read from T0287.t06.many.frag # found chain 1mkfA in template set Warning: unaligning (T0287)E137 (1mkfA)S324 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1mkfA)D326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1mkfA)G327 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :M 1mkfA 325 :H T0287 141 :QIELY 1mkfA 328 :VWTST Number of specific fragments extracted= 2 number of extra gaps= 2 total=28958 # 1b66A.137.128 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :E 1b66A 133 :E T0287 139 :DSQIELY 1b66A 135 :DNNIVVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28960 # 1xmtA.137.31 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)E137 (1xmtA)N32 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELY 1xmtA 35 :KVMDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28961 # 1k3bA.137.84 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :EM 1k3bA 85 :EE T0287 141 :QIELY 1k3bA 89 :KVTTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28963 # 2ayh.137.125 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)M138 (2ayh)V127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. T0287 137 :E 2ayh 126 :G T0287 141 :QIELY 2ayh 130 :HEKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28965 # 1d3yA.137.100 read from T0287.t06.many.frag # found chain 1d3yA in template set Warning: unaligning (T0287)Q141 (1d3yA)G173 because P (beta_P) conformation "forbidden" or filtered. T0287 137 :EMDS 1d3yA 169 :KLGT T0287 142 :IELY 1d3yA 174 :AYNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28967 # 1wubA.137.81 read from T0287.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)S140 (1wubA)T85 because G (3-10) conformation "forbidden" or filtered. T0287 137 :EMD 1wubA 82 :FVS T0287 141 :QIELY 1wubA 86 :QIEPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28969 # 1jiwI.137.62 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 137 :EMDSQIELY 1jiwI 63 :PTPAGIALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28970 # 1tzlA.137.288 read from T0287.t06.many.frag # found chain 1tzlA in template set Warning: unaligning (T0287)Q141 (1tzlA)E294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 (1tzlA)S297 because Y (epsilon') conformation "forbidden" or filtered. T0287 137 :EMDS 1tzlA 290 :ALNS T0287 142 :IE 1tzlA 295 :IE T0287 145 :Y 1tzlA 298 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28973 # 1vajA.137.122 read from T0287.t06.many.frag # found chain 1vajA in template set T0287 137 :EMDSQIELY 1vajA 123 :ERPRKIKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28974 # 1jiwI.137.9 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1jiwI)T16 because E (beta_S) conformation "forbidden" or filtered. T0287 137 :EMD 1jiwI 10 :DLA T0287 141 :QI 1jiwI 14 :QW T0287 144 :LY 1jiwI 17 :LQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=28977 # 1bco.138.292 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1bco 540 :LHSTVYCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=28978 # 2c5qA.138.143 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 138 :MDSQIELYG 2c5qA 144 :PKAVVKAVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28979 # 1hjrA.138.20 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)M138 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)V21 Warning: unaligning (T0287)D139 (1hjrA)G22 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 140 :SQI 1hjrA 23 :RQL T0287 145 :YG 1hjrA 28 :LG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28981 # 2d0oA.138.477 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2d0oA)Q483 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MD 2d0oA 478 :ED T0287 141 :QI 2d0oA 481 :SV T0287 144 :LYG 2d0oA 484 :FFS Number of specific fragments extracted= 3 number of extra gaps= 2 total=28984 # 1r6wA.138.14 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)Q141 (1r6wA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 138 :MDS 1r6wA 13 :MDA T0287 142 :IE 1r6wA 17 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28986 # 1xt5A.138.79 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 1xt5A 80 :FL T0287 141 :QIELYG 1xt5A 83 :RASVAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28988 # 1f00I.138.99 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)Q141 (1f00I)N760 because D (zeta) conformation "forbidden" or filtered. T0287 138 :MDS 1f00I 757 :DDG T0287 142 :IELYG 1f00I 761 :IEIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28990 # 1olzA.138.329 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)D139 (1olzA)H331 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :M 1olzA 330 :S T0287 140 :SQIELYG 1olzA 332 :TKWVRYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28992 # 1oygA.138.175 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)M138 (1oygA)S202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 139 :DS 1oygA 203 :DS T0287 143 :ELYG 1oygA 207 :NING Number of specific fragments extracted= 2 number of extra gaps= 2 total=28994 # 2f15A.138.31 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)M138 (2f15A)W99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2f15A)P104 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 2f15A 100 :STKI T0287 144 :LYG 2f15A 105 :LIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28996 # 1rv9A.138.189 read from T0287.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)G146 (1rv9A)G198 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1rv9A 190 :AATAFEGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28997 # 1zpwX.138.68 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MD 1zpwX 69 :VA T0287 142 :IELYG 1zpwX 73 :VEVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28999 # 1h6lA.138.177 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)Q141 (1h6lA)Q209 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1h6lA 206 :MNS T0287 142 :IELYG 1h6lA 210 :TEGMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29001 # 1obdA.138.224 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1obdA)V232 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MD 1obdA 225 :KT T0287 141 :QIEL 1obdA 228 :EIIL T0287 146 :G 1obdA 233 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=29004 # 1s3rA.138.267 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1s3rA 265 :PNSPSALF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29005 # 1ru3A.138.338 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)E143 (1ru3A)E344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDSQI 1ru3A 339 :GDMHV T0287 144 :LY 1ru3A 345 :FG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29007 # 1luzA.138.21 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 1luzA 22 :KDY T0287 142 :IELYG 1luzA 26 :LYIYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29009 # 1l4dB.138.77 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)G146 (1l4dB)D111 because E (beta_S) conformation "forbidden" or filtered. T0287 138 :MDSQIELY 1l4dB 103 :FASDATIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29010 # 1ok7A.138.37 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :MD 1ok7A 38 :AD T0287 141 :QIELYG 1ok7A 41 :TLSLTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29012 # 1jiwI.138.63 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MDS 1jiwI 64 :TPA T0287 142 :IELY 1jiwI 68 :IALL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29014 # 1xmtA.138.32 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)M138 (1xmtA)N33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELYG 1xmtA 35 :KVMDLVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=29015 # 2ayh.138.126 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (2ayh)G129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :M 2ayh 127 :V T0287 141 :QIELY 2ayh 130 :HEKVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29017 # 2bjfA.138.158 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 2bjfA 159 :TKE T0287 142 :IELYG 2bjfA 163 :LNVFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29019 # 1hx6A.138.365 read from T0287.t06.many.frag # found chain 1hx6A in training set Warning: unaligning (T0287)Q141 (1hx6A)N370 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1hx6A)R372 because Y (epsilon') conformation "forbidden" or filtered. T0287 138 :MDS 1hx6A 367 :VNQ T0287 142 :I 1hx6A 371 :A T0287 144 :LYG 1hx6A 373 :LLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=29022 # 1b66A.138.129 read from T0287.t06.many.frag # found chain 1b66A in template set Warning: unaligning (T0287)M138 (1b66A)T134 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DSQIELYG 1b66A 135 :DNNIVVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29023 # 1wubA.138.82 read from T0287.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)E143 (1wubA)E88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0287 138 :MDSQI 1wubA 83 :VSTQI T0287 144 :LY 1wubA 89 :PL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29025 # 2f6eA.138.16 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. T0287 138 :MD 2f6eA 18 :ID T0287 141 :QIELYG 2f6eA 21 :KNFYFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29027 # 1jiwI.138.10 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1jiwI)Q14 because P (beta_P) conformation "forbidden" or filtered. T0287 138 :MD 1jiwI 11 :LA T0287 142 :IELYG 1jiwI 15 :WTLQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29029 # 1ijqA.138.237 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. T0287 138 :MDS 1ijqA 614 :TGS T0287 142 :IELYG 1ijqA 618 :VNLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29031 # 1k3bA.138.85 read from T0287.t06.many.frag # found chain 1k3bA in template set Warning: unaligning (T0287)D139 (1k3bA)G87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)S140 (1k3bA)S88 because T (delta_L) conformation "forbidden" or filtered. T0287 138 :M 1k3bA 86 :E T0287 141 :QIELYG 1k3bA 89 :KVTTYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29033 # 2c5qA.139.144 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)Y145 (2c5qA)V151 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIEL 2c5qA 145 :KAVVKA T0287 146 :GT 2c5qA 152 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29035 # 1bco.139.293 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)E143 (1bco)Y545 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1bco 541 :HSTV T0287 144 :LY 1bco 546 :CY T0287 147 :T 1bco 549 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=29038 # 2d0oA.139.478 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 139 :D 2d0oA 479 :D T0287 141 :QIELYGT 2d0oA 481 :SVQFFST Number of specific fragments extracted= 2 number of extra gaps= 1 total=29040 # 1hjrA.139.21 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)S140 (1hjrA)R23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 T0287 139 :D 1hjrA 22 :G T0287 142 :I 1hjrA 25 :L T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29043 # 1olzA.139.330 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 139 :DSQIELY 1olzA 331 :HTKWVRY T0287 147 :T 1olzA 339 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29045 # 1r6wA.139.15 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 139 :DSQIE 1r6wA 14 :DAGVV T0287 147 :T 1r6wA 22 :R Number of specific fragments extracted= 2 number of extra gaps= 0 total=29047 Number of alignments=1146 # 1f00I.139.100 read from T0287.t06.many.frag # found chain 1f00I in template set T0287 139 :DSQIELYGT 1f00I 758 :DGNIEIVGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29048 # 1rv9A.139.190 read from T0287.t06.many.frag # found chain 1rv9A in training set T0287 139 :DSQIELYGT 1rv9A 191 :ATAFEGIGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29049 # 1ru3A.139.339 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1ru3A 340 :DMHVEF T0287 147 :T 1ru3A 348 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29051 # 1ok7A.139.38 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)S140 (1ok7A)G40 because T (delta_L) conformation "forbidden" or filtered. T0287 139 :D 1ok7A 39 :D T0287 141 :QIELYGT 1ok7A 41 :TLSLTGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29053 # 1s3rA.139.268 read from T0287.t06.many.frag # found chain 1s3rA in template set T0287 139 :DSQIELYGT 1s3rA 266 :NSPSALFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29054 # 1xt5A.139.80 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 139 :D 1xt5A 81 :L T0287 141 :QIELY 1xt5A 83 :RASVA T0287 147 :T 1xt5A 89 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=29057 # 1jiwI.139.64 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)E143 (1jiwI)A69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 139 :DSQI 1jiwI 65 :PAGI T0287 144 :LY 1jiwI 70 :LL T0287 147 :T 1jiwI 73 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=29060 # 1oygA.139.176 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 Warning: unaligning (T0287)G146 (1oygA)G210 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :DS 1oygA 203 :DS T0287 143 :ELY 1oygA 207 :NIN T0287 147 :T 1oygA 211 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29063 # 2f15A.139.32 read from T0287.t06.many.frag # found chain 2f15A in template set T0287 139 :DSQIELYGT 2f15A 100 :STKIPLIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29064 # 1zpwX.139.69 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1zpwX)Q72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1zpwX)G77 because S (epsilon) conformation "forbidden" or filtered. T0287 139 :D 1zpwX 70 :A T0287 142 :IELY 1zpwX 73 :VEVL T0287 147 :T 1zpwX 78 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29067 # 1wubA.139.83 read from T0287.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)E143 (1wubA)E88 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DSQI 1wubA 84 :STQI T0287 144 :LYGT 1wubA 89 :PLGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29069 # 1ijqA.139.238 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)D139 (1ijqA)G615 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1ijqA)E623 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL Number of specific fragments extracted= 2 number of extra gaps= 3 total=29071 # 1xmtA.139.33 read from T0287.t06.many.frag # found chain 1xmtA in training set Warning: unaligning (T0287)D139 (1xmtA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1xmtA)V36 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :S 1xmtA 35 :K T0287 142 :IELYGT 1xmtA 37 :MDLVHT Number of specific fragments extracted= 2 number of extra gaps= 2 total=29073 # 1l4dB.139.78 read from T0287.t06.many.frag # found chain 1l4dB in template set Warning: unaligning (T0287)D139 (1l4dB)A104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1l4dB)T108 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :SQI 1l4dB 105 :SDA T0287 144 :LYGT 1l4dB 109 :ITDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=29075 # 1hbnB.139.3 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)Q141 (1hbnB)K7 because E (beta_S) conformation "forbidden" or filtered. T0287 139 :DS 1hbnB 5 :ED T0287 142 :IELYGT 1hbnB 8 :VDLYDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29077 # 2bjfA.139.159 read from T0287.t06.many.frag # found chain 2bjfA in template set T0287 139 :DSQIELYGT 2bjfA 160 :KEKLNVFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29078 # 1obdA.139.225 read from T0287.t06.many.frag # found chain 1obdA in training set Warning: unaligning (T0287)S140 (1obdA)N227 because L (left) conformation "forbidden" or filtered. T0287 139 :D 1obdA 226 :T T0287 141 :QIELYGT 1obdA 228 :EIILVDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29080 # 1luzA.139.22 read from T0287.t06.many.frag # found chain 1luzA in training set Warning: unaligning (T0287)S140 (1luzA)Y24 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q141 (1luzA)A25 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :D 1luzA 23 :D T0287 142 :IELYGT 1luzA 26 :LYIYLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29082 # 1gd0A.139.43 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)D139 (1gd0A)D44 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 1gd0A 45 :QLMAFGGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29083 # 1h6lA.139.178 read from T0287.t06.many.frag # found chain 1h6lA in training set Warning: unaligning (T0287)S140 (1h6lA)S208 because Y (epsilon') conformation "forbidden" or filtered. T0287 139 :D 1h6lA 207 :N T0287 141 :QIELYGT 1h6lA 209 :QTEGMAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29085 # 2f6eA.139.17 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)D139 (2f6eA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYG 2f6eA 20 :NKNFYFR Number of specific fragments extracted= 1 number of extra gaps= 2 total=29086 # 1jiwI.139.11 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 139 :DSQIELYGT 1jiwI 12 :AGQWTLQQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29087 # 1n9eA.139.742 read from T0287.t06.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)Y145 (1n9eA)Y749 because L (left) conformation "forbidden" or filtered. T0287 139 :DSQIEL 1n9eA 743 :ESNWEF T0287 146 :GT 1n9eA 750 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29089 # 2ayh.139.127 read from T0287.t06.many.frag # found chain 2ayh in training set Warning: unaligning (T0287)D139 (2ayh)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2ayh)S135 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 2ayh 129 :GHEKVI T0287 147 :T 2ayh 136 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=29091 # 2c5qA.140.145 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)N148 (2c5qA)N154 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 2c5qA 146 :AVVKAVGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29092 # 2d0oA.140.479 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)S140 (2d0oA)G480 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 2d0oA 481 :SVQFFSTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=29093 # 1ru3A.140.340 read from T0287.t06.many.frag # found chain 1ru3A in template set T0287 140 :SQIELYGTN 1ru3A 341 :MHVEFGGGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29094 # 1bco.140.294 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1bco 542 :STVYCY T0287 147 :TN 1bco 549 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29096 # 1olzA.140.331 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 140 :SQIELY 1olzA 332 :TKWVRY T0287 147 :TN 1olzA 339 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29098 # 1rv9A.140.191 read from T0287.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)G146 (1rv9A)G198 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 140 :SQIELY 1rv9A 192 :TAFEGI T0287 147 :T 1rv9A 199 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=29100 # 1hjrA.140.22 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)Q141 (1hjrA)Q24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :S 1hjrA 23 :R T0287 142 :I 1hjrA 25 :L T0287 145 :YGT 1hjrA 28 :LGS Number of specific fragments extracted= 3 number of extra gaps= 3 total=29103 # 1jiwI.140.65 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)Q141 (1jiwI)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 1jiwI 66 :A T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG Number of specific fragments extracted= 3 number of extra gaps= 2 total=29106 # 1r6wA.140.16 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)S140 (1r6wA)A15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 141 :QIE 1r6wA 16 :GVV T0287 147 :TN 1r6wA 22 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29108 # 1ok7A.140.39 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)Q141 (1ok7A)T41 because E (beta_S) conformation "forbidden" or filtered. T0287 140 :S 1ok7A 40 :G T0287 142 :IELYGTN 1ok7A 42 :LSLTGTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29110 # 1f00I.140.101 read from T0287.t06.many.frag # found chain 1f00I in template set T0287 140 :SQIELYGTN 1f00I 759 :GNIEIVGTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29111 # 1s3rA.140.269 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)S140 (1s3rA)S267 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1s3rA)G275 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELY 1s3rA 268 :PSALF T0287 147 :T 1s3rA 274 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=29113 # 1xt5A.140.81 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)S140 (1xt5A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1xt5A)S85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1xt5A)N88 because D (zeta) conformation "forbidden" or filtered. T0287 141 :QI 1xt5A 83 :RA T0287 144 :LY 1xt5A 86 :VA T0287 147 :TN 1xt5A 89 :LA Number of specific fragments extracted= 3 number of extra gaps= 3 total=29116 # 1xmtA.140.34 read from T0287.t06.many.frag # found chain 1xmtA in training set T0287 140 :SQIELYGTN 1xmtA 35 :KVMDLVHTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29117 # 2f15A.140.33 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIELYGT 2f15A 101 :TKIPLIKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29118 # 1gd0A.140.44 read from T0287.t06.many.frag # found chain 1gd0A in training set T0287 140 :SQIELYGTN 1gd0A 45 :QLMAFGGSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29119 # 1hbnB.140.4 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQIELY 1hbnB 6 :DKVDLY T0287 147 :TN 1hbnB 13 :DR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29121 # 1wubA.140.84 read from T0287.t06.many.frag # found chain 1wubA in training set Warning: unaligning (T0287)Q141 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1wubA)E88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1wubA)G92 because S (epsilon) conformation "forbidden" or filtered. T0287 140 :S 1wubA 85 :T T0287 142 :I 1wubA 87 :I T0287 144 :LYG 1wubA 89 :PLG T0287 148 :N 1wubA 93 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=29125 # 2bjfA.140.160 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)Q141 (2bjfA)K162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2bjfA)N164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :S 2bjfA 161 :E T0287 142 :I 2bjfA 163 :L T0287 144 :LY 2bjfA 165 :VF T0287 147 :TN 2bjfA 168 :NN Number of specific fragments extracted= 4 number of extra gaps= 3 total=29129 # 1xmkA.140.53 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)S140 (1xmkA)G341 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 2 total=29130 # 1oygA.140.177 read from T0287.t06.many.frag # found chain 1oygA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1oygA)L206 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1oygA)L206 T0287 140 :S 1oygA 204 :S T0287 143 :ELYGTN 1oygA 207 :NINGVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29132 # 1ijqA.140.239 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)Q141 (1ijqA)D617 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ijqA)N624 because L (left) conformation "forbidden" or filtered. T0287 140 :S 1ijqA 616 :S T0287 142 :IELY 1ijqA 618 :VNLL T0287 147 :T 1ijqA 623 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=29135 # 1acc.140.537 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)S140 (1acc)G538 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1acc)D546 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 1acc 539 :NL T0287 144 :LYGT 1acc 542 :YQGK Number of specific fragments extracted= 2 number of extra gaps= 3 total=29137 # 1zpwX.140.70 read from T0287.t06.many.frag # found chain 1zpwX in template set Warning: unaligning (T0287)S140 (1zpwX)G71 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (1zpwX)E74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1zpwX)G77 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QI 1zpwX 72 :QV T0287 144 :LY 1zpwX 75 :VL T0287 147 :TN 1zpwX 78 :VG Number of specific fragments extracted= 3 number of extra gaps= 3 total=29140 # 1lpbA.140.24 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)E143 (1lpbA)C28 because P (beta_P) conformation "forbidden" or filtered. T0287 140 :SQI 1lpbA 25 :SNC T0287 144 :LYGTN 1lpbA 29 :QHDTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29142 # 1jiwI.140.12 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)S140 (1jiwI)G13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1jiwI 14 :QWTLQ T0287 147 :TN 1jiwI 20 :DE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29144 # 1w8kA.140.311 read from T0287.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)G146 (1w8kA)N358 because G (3-10) conformation "forbidden" or filtered. T0287 140 :SQIELY 1w8kA 352 :KKCYIF T0287 147 :TN 1w8kA 359 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29146 # 1n9eA.140.743 read from T0287.t06.many.frag # found chain 1n9eA in training set Warning: unaligning (T0287)Y145 (1n9eA)Y749 because L (left) conformation "forbidden" or filtered. T0287 140 :SQIEL 1n9eA 744 :SNWEF T0287 146 :GTN 1n9eA 750 :GND Number of specific fragments extracted= 2 number of extra gaps= 1 total=29148 # 2f6eA.140.18 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)S140 (2f6eA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E143 (2f6eA)F23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 141 :QI 2f6eA 21 :KN T0287 144 :LYG 2f6eA 24 :YFR T0287 148 :N 2f6eA 28 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=29151 # 1ir6A.140.346 read from T0287.t06.many.frag # found chain 1ir6A in template set Warning: unaligning (T0287)L144 (1ir6A)R390 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1ir6A)Y391 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1ir6A)H394 because Y (epsilon') conformation "forbidden" or filtered. T0287 140 :SQIE 1ir6A 386 :DLLL T0287 146 :GT 1ir6A 392 :GG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29153 # 2c5qA.141.146 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 141 :QIELYGTNL 2c5qA 147 :VVKAVGTNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29154 # 2d0oA.141.480 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 141 :QIELYGTNL 2d0oA 481 :SVQFFSTPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29155 # 1ru3A.141.341 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 141 :QIELY 1ru3A 342 :HVEFG T0287 147 :TNL 1ru3A 348 :GKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29157 # 1bco.141.295 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1bco 543 :TVYCYTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29158 # 1jiwI.141.66 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1jiwI 67 :GIALL T0287 147 :TNL 1jiwI 73 :RGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29160 # 1ok7A.141.40 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYGTN 1ok7A 41 :TLSLTGTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29161 # 1olzA.141.332 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 141 :QIELY 1olzA 333 :KWVRY T0287 147 :TNL 1olzA 339 :GPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29163 # 1xmkA.141.54 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 141 :QIELYG 1xmkA 342 :DVYRQG Number of specific fragments extracted= 1 number of extra gaps= 1 total=29164 # 1gd0A.141.45 read from T0287.t06.many.frag # found chain 1gd0A in training set T0287 141 :QIELYGTNL 1gd0A 46 :LMAFGGSSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29165 # 2bjfA.141.161 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 2bjfA 162 :KLNVF T0287 147 :TNL 2bjfA 168 :NNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29167 # 1lpbA.141.25 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)E143 (1lpbA)C28 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QI 1lpbA 26 :NC T0287 144 :LYGTNL 1lpbA 29 :QHDTIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29169 # 1s3rA.141.270 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)G146 (1s3rA)G273 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1s3rA 268 :PSALF T0287 147 :TNL 1s3rA 274 :SGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29171 # 1r6wA.141.17 read from T0287.t06.many.frag # found chain 1r6wA in training set Warning: unaligning (T0287)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6wA)D21 Warning: unaligning (T0287)G146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r6wA)D21 T0287 141 :QIE 1r6wA 16 :GVV T0287 147 :TNL 1r6wA 22 :RRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=29173 Number of alignments=1147 # 1xmtA.141.35 read from T0287.t06.many.frag # found chain 1xmtA in training set T0287 141 :QIELYGTNL 1xmtA 36 :VMDLVHTYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29174 # 1pjxA.141.247 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)Q141 because of BadResidue code BAD_PEPTIDE in next template residue (1pjxA)I249 Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG Number of specific fragments extracted= 1 number of extra gaps= 2 total=29175 # 1acc.141.538 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 141 :QI 1acc 539 :NL T0287 144 :L 1acc 542 :Y T0287 146 :GTNL 1acc 544 :GKDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=29178 # 2f15A.141.34 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (2f15A)S108 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 T0287 141 :QIELY 2f15A 102 :KIPLI T0287 148 :N 2f15A 109 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=29180 # 1hbnB.141.5 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1hbnB 7 :KVDLY T0287 147 :TNL 1hbnB 13 :DRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29182 # 1se8A.141.104 read from T0287.t06.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)Q141 (1se8A)R105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1se8A)G110 because H (helix) conformation "forbidden" or filtered. T0287 142 :IELY 1se8A 106 :MEQL T0287 147 :TNL 1se8A 111 :TQP Number of specific fragments extracted= 2 number of extra gaps= 2 total=29184 # 1jiwI.141.13 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELY 1jiwI 14 :QWTLQ T0287 147 :TNL 1jiwI 20 :DEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29186 # 1f00I.141.102 read from T0287.t06.many.frag # found chain 1f00I in template set Warning: unaligning (T0287)T147 (1f00I)T766 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1f00I)G767 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QIELYG 1f00I 760 :NIEIVG T0287 149 :L 1f00I 768 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29188 # 1rv9A.141.192 read from T0287.t06.many.frag # found chain 1rv9A in training set Warning: unaligning (T0287)E143 (1rv9A)E195 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1rv9A)S199 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1rv9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0287 141 :QI 1rv9A 193 :AF T0287 144 :LYG 1rv9A 196 :GIG T0287 149 :L 1rv9A 201 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=29191 # 1xt5A.141.82 read from T0287.t06.many.frag # found chain 1xt5A in template set Warning: unaligning (T0287)L149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xt5A)P92 T0287 141 :QIELYGTN 1xt5A 83 :RASVANLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29192 # 1w8kA.141.312 read from T0287.t06.many.frag # found chain 1w8kA in training set Warning: unaligning (T0287)N148 (1w8kA)K360 because P (beta_P) conformation "forbidden" or filtered. T0287 141 :QIELYGT 1w8kA 353 :KCYIFNT T0287 149 :L 1w8kA 361 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29194 # 1hjrA.141.23 read from T0287.t06.many.frag # found chain 1hjrA in template set Warning: unaligning (T0287)E143 because of BadResidue code BAD_PEPTIDE in next template residue (1hjrA)Y27 Warning: unaligning (T0287)L144 because of BadResidue code BAD_PEPTIDE at template residue (1hjrA)Y27 Warning: unaligning (T0287)N148 (1hjrA)G31 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QI 1hjrA 24 :QL T0287 145 :YGT 1hjrA 28 :LGS T0287 149 :L 1hjrA 32 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=29197 # 1ijqA.141.240 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)G146 (1ijqA)A622 because Y (epsilon') conformation "forbidden" or filtered. T0287 141 :QIELY 1ijqA 617 :DVNLL T0287 147 :TNL 1ijqA 623 :ENL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29199 # 1v05A.141.39 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 141 :QIELYGTNL 1v05A 2669 :MVGVHGPKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29200 # 1gxrA.141.246 read from T0287.t06.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)G146 (1gxrA)H685 because N (gamma') conformation "forbidden" or filtered. T0287 141 :QIELY 1gxrA 680 :NVEVL T0287 147 :TNL 1gxrA 686 :VNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29202 # 1ttuA.141.227 read from T0287.t06.many.frag # found chain 1ttuA in template set T0287 141 :QIELYGTNL 1ttuA 414 :AFHASSTKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29203 # 1txvA.141.265 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)Q141 (1txvA)A266 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1txvA 267 :VEILDSY Number of specific fragments extracted= 1 number of extra gaps= 2 total=29204 # 1bco.142.296 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1bco 544 :VYCY T0287 147 :TNLP 1bco 549 :LDGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29206 # 2c5qA.142.147 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)E143 (2c5qA)K149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2c5qA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :I 2c5qA 148 :V T0287 144 :LY 2c5qA 150 :AV T0287 147 :TNLP 2c5qA 153 :TNVQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=29209 # 1ok7A.142.41 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L149 (1ok7A)L49 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGTN 1ok7A 42 :LSLTGTD T0287 150 :P 1ok7A 50 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29211 # 1ru3A.142.342 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. T0287 142 :IEL 1ru3A 343 :VEF T0287 146 :GTNLP 1ru3A 347 :GGKTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29213 # 1jiwI.142.67 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1jiwI 68 :IALL T0287 147 :TN 1jiwI 73 :RG T0287 150 :P 1jiwI 76 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=29216 # 1xmkA.142.55 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 142 :IELYG 1xmkA 343 :VYRQG T0287 150 :P 1xmkA 351 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29218 # 2d0oA.142.481 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 142 :IELYGTNLP 2d0oA 482 :VQFFSTPLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29219 # 1gttA.142.188 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 142 :IELYGTNLP 1gttA 189 :VRVLAEGFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29220 # 1lpbA.142.26 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1lpbA 27 :CCQHDTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29221 # 1gd0A.142.46 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 142 :IEL 1gd0A 47 :MAF T0287 146 :GTNLP 1gd0A 51 :GSSEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29223 # 1jiwI.142.14 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 142 :IELYGTNLP 1jiwI 15 :WTLQQDEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29224 # 1pjxA.142.248 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1pjxA)I249 Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0287 143 :ELYG 1pjxA 250 :EVFG T0287 149 :LP 1pjxA 256 :GG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29226 # 1txvA.142.266 read from T0287.t06.many.frag # found chain 1txvA in template set T0287 142 :IELYGTNLP 1txvA 267 :VEILDSYYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29227 # 2f15A.142.35 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)G146 (2f15A)K107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 142 :IELY 2f15A 103 :IPLI T0287 147 :TN 2f15A 108 :SH Number of specific fragments extracted= 2 number of extra gaps= 2 total=29229 # 1v05A.142.40 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 142 :IELYGTNLP 1v05A 2670 :VGVHGPKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29230 # 1acc.142.539 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)Y145 (1acc)Q543 because L (left) conformation "forbidden" or filtered. T0287 142 :I 1acc 540 :L T0287 144 :L 1acc 542 :Y T0287 146 :GTNLP 1acc 544 :GKDIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=29233 # 2bjfA.142.162 read from T0287.t06.many.frag # found chain 2bjfA in template set Warning: unaligning (T0287)G146 (2bjfA)D167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2bjfA)G171 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 2bjfA 163 :LNVF T0287 147 :TNL 2bjfA 168 :NNI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29235 # 1nqeA.142.549 read from T0287.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)G146 (1nqeA)P554 because N (gamma') conformation "forbidden" or filtered. T0287 142 :IELY 1nqeA 550 :AVAY T0287 147 :TNLP 1nqeA 555 :VTSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29237 # 1ijqA.142.241 read from T0287.t06.many.frag # found chain 1ijqA in training set Warning: unaligning (T0287)P150 (1ijqA)L626 because D (zeta) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1ijqA 618 :VNLLAENL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29238 # 1olzA.142.333 read from T0287.t06.many.frag # found chain 1olzA in template set Warning: unaligning (T0287)G146 (1olzA)N338 because G (3-10) conformation "forbidden" or filtered. T0287 142 :IELY 1olzA 334 :WVRY T0287 147 :TNLP 1olzA 339 :GPVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29240 # 1k3sA.142.69 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)E143 (1k3sA)G71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1k3sA 70 :I T0287 144 :LYGTNL 1k3sA 72 :ADADNT Number of specific fragments extracted= 2 number of extra gaps= 2 total=29242 # 1gxrA.142.247 read from T0287.t06.many.frag # found chain 1gxrA in training set Warning: unaligning (T0287)N148 (1gxrA)N687 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELYGT 1gxrA 681 :VEVLHV T0287 149 :LP 1gxrA 688 :KP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29244 # 1s3rA.142.271 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)P150 (1s3rA)T277 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :IELYGTNL 1s3rA 269 :SALFGSGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29245 # 1ttuA.142.228 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 142 :I 1ttuA 415 :F T0287 144 :LY 1ttuA 417 :AS T0287 147 :TNL 1ttuA 420 :TKW Number of specific fragments extracted= 3 number of extra gaps= 3 total=29248 # 1hbnB.142.6 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1hbnB)G15 because T (delta_L) conformation "forbidden" or filtered. T0287 142 :IELY 1hbnB 8 :VDLY T0287 147 :TN 1hbnB 13 :DR T0287 150 :P 1hbnB 16 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=29251 # 1vh5A.142.117 read from T0287.t06.many.frag # found chain 1vh5A in training set Warning: unaligning (T0287)G146 (1vh5A)D120 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1vh5A 116 :IEIF T0287 147 :TNLP 1vh5A 121 :EKGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29253 # 1se8A.142.105 read from T0287.t06.many.frag # found chain 1se8A in training set Warning: unaligning (T0287)N148 (1se8A)Q112 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELYGT 1se8A 106 :MEQLGT T0287 149 :LP 1se8A 113 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29255 # 1vgjA.142.77 read from T0287.t06.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)I142 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)I78 Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1vgjA)N83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF Number of specific fragments extracted= 1 number of extra gaps= 2 total=29256 # 1yn3A.142.7 read from T0287.t06.many.frag # found chain 1yn3A in training set T0287 142 :IELYGTNLP 1yn3A 164 :ITVNGTSQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29257 # 1xi1A.142.291 read from T0287.t06.many.frag # found chain 1xi1A in template set Warning: unaligning (T0287)G146 (1xi1A)E296 because P (beta_P) conformation "forbidden" or filtered. T0287 142 :IELY 1xi1A 292 :FELK T0287 147 :TNLP 1xi1A 297 :GYIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29259 # 1ru3A.143.343 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ru3A)G347 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :EL 1ru3A 344 :EF T0287 147 :TNLPL 1ru3A 348 :GKTPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29261 # 1xmkA.143.56 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELYG 1xmkA 344 :YRQG T0287 150 :PL 1xmkA 351 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29263 # 1ok7A.143.42 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)G146 (1ok7A)G46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELY 1ok7A 43 :SLT T0287 147 :TNLP 1ok7A 47 :TDLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29265 # 1bco.143.297 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELY 1bco 545 :YCY T0287 147 :TNLPL 1bco 549 :LDGRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29267 # 2c5qA.143.148 read from T0287.t06.many.frag # found chain 2c5qA in template set Warning: unaligning (T0287)G146 (2c5qA)G152 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELY 2c5qA 149 :KAV T0287 147 :TNLPL 2c5qA 153 :TNVQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29269 # 1gd0A.143.47 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGTNLP 1gd0A 48 :AFGGSSEP Number of specific fragments extracted= 1 number of extra gaps= 1 total=29270 # 1gttA.143.189 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 143 :ELYGTNLPL 1gttA 190 :RVLAEGFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29271 # 1lpbA.143.27 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGTNL 1lpbA 28 :CQHDTIL T0287 151 :L 1lpbA 36 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29273 # 1v05A.143.41 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)E143 (1v05A)G2671 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNLPL 1v05A 2672 :VHGPKTPC Number of specific fragments extracted= 1 number of extra gaps= 1 total=29274 # 1jiwI.143.15 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELY 1jiwI 16 :TLQ T0287 148 :NLPL 1jiwI 21 :EAPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29276 # 1jiwI.143.68 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELY 1jiwI 69 :ALL T0287 147 :TNLPL 1jiwI 73 :RGGLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29278 # 2f15A.143.36 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 143 :ELYGTN 2f15A 104 :PLIKSH T0287 151 :L 2f15A 112 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=29280 # 2d0oA.143.482 read from T0287.t06.many.frag # found chain 2d0oA in template set Warning: unaligning (T0287)N148 (2d0oA)P488 because P (beta_P) conformation "forbidden" or filtered. T0287 143 :ELYGT 2d0oA 483 :QFFST T0287 149 :LPL 2d0oA 489 :LPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29282 # 1acc.143.540 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)E143 (1acc)Q541 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1acc)D546 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LYGT 1acc 542 :YQGK T0287 149 :LPL 1acc 547 :ITE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29284 # 1ttuA.143.229 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)E143 (1ttuA)H416 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LY 1ttuA 417 :AS T0287 147 :TNL 1ttuA 420 :TKW T0287 151 :L 1ttuA 424 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=29287 # 1k3sA.143.70 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGT 1k3sA 71 :GADAD T0287 149 :L 1k3sA 77 :T T0287 151 :L 1k3sA 79 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=29290 # 1vgjA.143.78 read from T0287.t06.many.frag # found chain 1vgjA in template set Warning: unaligning (T0287)G146 (1vgjA)P82 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1vgjA)N85 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1vgjA)N85 Warning: unaligning (T0287)P150 (1vgjA)Y86 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1vgjA 79 :GVF T0287 147 :T 1vgjA 83 :N T0287 151 :L 1vgjA 87 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=29293 # 2evrA.143.177 read from T0287.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 143 :ELYGTNL 2evrA 166 :VFFGTSQ T0287 151 :L 2evrA 174 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=29295 # 1nqeA.143.550 read from T0287.t06.many.frag # found chain 1nqeA in template set Warning: unaligning (T0287)N148 (1nqeA)T556 because Y (epsilon') conformation "forbidden" or filtered. T0287 143 :ELYGT 1nqeA 551 :VAYPV T0287 149 :LPL 1nqeA 557 :SHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29297 # 1txvA.143.267 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 143 :ELY 1txvA 268 :EIL T0287 147 :TN 1txvA 272 :SY T0287 150 :PL 1txvA 275 :QR Number of specific fragments extracted= 3 number of extra gaps= 2 total=29300 # 1pjxA.143.249 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0287 143 :ELYG 1pjxA 250 :EVFG T0287 150 :PL 1pjxA 257 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29302 # 2fj8A.143.72 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 T0287 143 :ELY 2fj8A 73 :ICT T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=29304 # 1hbnB.143.7 read from T0287.t06.many.frag # found chain 1hbnB in training set Warning: unaligning (T0287)E143 (1hbnB)D9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1hbnB)D12 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1hbnB 10 :LY T0287 147 :TNLPL 1hbnB 13 :DRGNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29306 # 1yn3A.143.8 read from T0287.t06.many.frag # found chain 1yn3A in training set T0287 143 :ELYGTNLPL 1yn3A 165 :TVNGTSQNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29307 # 1ejfA.143.64 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)E143 (1ejfA)K65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ejfA 66 :HKRTDR T0287 151 :L 1ejfA 73 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=29309 # 2f6eA.143.21 read from T0287.t06.many.frag # found chain 2f6eA in template set T0287 143 :ELYGTNLPL 2f6eA 23 :FYFRNGLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29310 # 1r5mA.143.132 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)L149 (1r5mA)G251 because T (delta_L) conformation "forbidden" or filtered. T0287 143 :ELYGTN 1r5mA 245 :RLWNKT T0287 150 :PL 1r5mA 252 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29312 # 1cfb.143.111 read from T0287.t06.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)T147 (1cfb)T725 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)N728 because G (3-10) conformation "forbidden" or filtered. T0287 143 :ELYG 1cfb 721 :VGQG T0287 148 :NL 1cfb 726 :EP T0287 151 :L 1cfb 729 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=29315 # 1i0vA.143.77 read from T0287.t06.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)E143 (1i0vA)V78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1i0vA)N83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. T0287 144 :LYGT 1i0vA 79 :VFNE T0287 150 :PL 1i0vA 85 :QL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29317 # 1tif.143.45 read from T0287.t06.many.frag # found chain 1tif in training set Warning: unaligning (T0287)G146 (1tif)A49 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (1tif)N51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1tif)K53 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1tif)P54 because C (cis) conformation "forbidden" or filtered. T0287 143 :ELY 1tif 46 :VLV T0287 147 :T 1tif 50 :P T0287 149 :L 1tif 52 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=29320 # 1gttA.144.190 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 144 :LYGTNLPLL 1gttA 191 :VLAEGFPPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29321 # 1xmkA.144.57 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 144 :LYG 1xmkA 345 :RQG T0287 150 :PLL 1xmkA 351 :PIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29323 # 1ru3A.144.344 read from T0287.t06.many.frag # found chain 1ru3A in template set T0287 144 :LYGTNLPLL 1ru3A 345 :FGGGKTPSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29324 # 1gd0A.144.48 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)Y145 (1gd0A)G50 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1gd0A 49 :F T0287 146 :GTNLPLL 1gd0A 51 :GSSEPCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29326 # 1lpbA.144.28 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNL 1lpbA 29 :QHDTIL T0287 151 :LL 1lpbA 36 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29328 # 1v05A.144.42 read from T0287.t06.many.frag # found chain 1v05A in training set T0287 144 :LYGTNLPLL 1v05A 2672 :VHGPKTPCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29329 # 1jiwI.144.16 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1jiwI 17 :LQQ T0287 148 :NLPLL 1jiwI 21 :EAPAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29331 # 1k3sA.144.71 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 1k3sA 72 :ADADNT T0287 151 :LL 1k3sA 79 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29333 # 1ok7A.144.43 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LYGTNLP 1ok7A 44 :LTGTDLE T0287 152 :L 1ok7A 52 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29335 # 1bco.144.298 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. T0287 144 :LY 1bco 546 :CY T0287 147 :TNLPLL 1bco 549 :LDGRFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29337 # 1ttuA.144.230 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 1ttuA 417 :ASSTKW T0287 151 :LL 1ttuA 424 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29339 # 2c5qA.144.149 read from T0287.t06.many.frag # found chain 2c5qA in template set T0287 144 :LYGTNLPLL 2c5qA 150 :AVGTNVQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29340 # 1jiwI.144.69 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGTN 1jiwI 70 :LLERG T0287 150 :PLL 1jiwI 76 :LTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29342 # 1acc.144.541 read from T0287.t06.many.frag # found chain 1acc in template set T0287 144 :LYGTNLPLL 1acc 542 :YQGKDITEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29343 # 2fj8A.144.73 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 T0287 144 :LY 2fj8A 74 :CT T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=29345 # 1wnyA.144.68 read from T0287.t06.many.frag # found chain 1wnyA in template set T0287 144 :LYGTNLPLL 1wnyA 268 :LLGEGTPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29346 # 2f15A.144.37 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)N148 (2f15A)H109 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 144 :LYGT 2f15A 105 :LIKS T0287 151 :LL 2f15A 112 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29348 # 2d0oA.144.483 read from T0287.t06.many.frag # found chain 2d0oA in template set T0287 144 :LYGTNLPLL 2d0oA 484 :FFSTPLPPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29349 # 1nh1A.144.167 read from T0287.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)Y145 (1nh1A)H169 because L (left) conformation "forbidden" or filtered. T0287 144 :L 1nh1A 168 :L T0287 146 :GTNLPLL 1nh1A 170 :GNVIPLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29351 # 2evrA.144.178 read from T0287.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 144 :LYGTNL 2evrA 167 :FFGTSQ T0287 151 :LL 2evrA 174 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29353 # 2jdxA.144.30 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)Y145 (2jdxA)Y69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (2jdxA)N70 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :L 2jdxA 68 :S T0287 147 :TNLPLL 2jdxA 71 :EWDPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29355 # 1txvA.144.268 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)G146 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0287 144 :LY 1txvA 269 :IL T0287 147 :TN 1txvA 272 :SY T0287 150 :PLL 1txvA 275 :QRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29358 # 1dmgA.144.167 read from T0287.t06.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)L151 (1dmgA)D176 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LYGTNLP 1dmgA 169 :LSGRNLP T0287 152 :L 1dmgA 177 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29360 # 1i0vA.144.78 read from T0287.t06.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)N148 (1i0vA)N83 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LYGT 1i0vA 79 :VFNE T0287 149 :LPLL 1i0vA 84 :NQLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29362 # 1ejfA.144.65 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 144 :LY 1ejfA 66 :HK T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :LL 1ejfA 73 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29365 # 2f6eA.144.22 read from T0287.t06.many.frag # found chain 2f6eA in template set Warning: unaligning (T0287)T147 (2f6eA)N27 because L (left) conformation "forbidden" or filtered. T0287 144 :LYG 2f6eA 24 :YFR T0287 148 :NLPLL 2f6eA 28 :GLPQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29367 # 1pjxA.144.250 read from T0287.t06.many.frag # found chain 1pjxA in training set Warning: unaligning (T0287)T147 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0287)N148 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0287)L149 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0287 144 :LYG 1pjxA 251 :VFG T0287 150 :PLL 1pjxA 257 :GQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29369 # 1h4aX.144.155 read from T0287.t06.many.frag # found chain 1h4aX in training set Warning: unaligning (T0287)Y145 (1h4aX)G158 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :L 1h4aX 157 :W T0287 146 :GTNLPLL 1h4aX 159 :ATNARVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29371 # 1yn3A.144.9 read from T0287.t06.many.frag # found chain 1yn3A in training set Warning: unaligning (T0287)G146 (1yn3A)G168 because G (3-10) conformation "forbidden" or filtered. T0287 144 :LY 1yn3A 166 :VN T0287 147 :TNLPLL 1yn3A 169 :TSQNIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29373 # 1r5mA.144.133 read from T0287.t06.many.frag # found chain 1r5mA in training set Warning: unaligning (T0287)G146 (1r5mA)N248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1r5mA)G251 because T (delta_L) conformation "forbidden" or filtered. T0287 144 :LY 1r5mA 246 :LW T0287 147 :TN 1r5mA 249 :KT T0287 150 :PLL 1r5mA 252 :ALL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29376 # 1gttA.145.191 read from T0287.t06.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1gttA 192 :L T0287 147 :TNLPLLK 1gttA 194 :EGFPPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29378 # 1k3sA.145.72 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. T0287 145 :YGTNL 1k3sA 73 :DADNT T0287 151 :LL 1k3sA 79 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29380 # 1xmkA.145.58 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 145 :YG 1xmkA 346 :QG T0287 150 :PLLK 1xmkA 351 :PIWH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29382 # 1ru3A.145.345 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)Y145 (1ru3A)G346 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :K 1ru3A 354 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=29384 # 1gd0A.145.49 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLP 1gd0A 50 :GGSSEP T0287 152 :LK 1gd0A 57 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29386 # 1lpbA.145.29 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNL 1lpbA 30 :HDTIL T0287 151 :LLK 1lpbA 36 :LSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29388 # 1nh1A.145.168 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 145 :YGTNLPLLK 1nh1A 169 :HGNVIPLNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29389 # 1jiwI.145.17 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)Q19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. T0287 145 :Y 1jiwI 18 :Q T0287 148 :NLPLLK 1jiwI 21 :EAPAIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29391 # 1wnyA.145.69 read from T0287.t06.many.frag # found chain 1wnyA in template set T0287 145 :YGTNLPLLK 1wnyA 269 :LGEGTPVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29392 # 1jiwI.145.70 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :Y 1jiwI 71 :L T0287 147 :TN 1jiwI 73 :RG T0287 150 :PLLK 1jiwI 76 :LTLM Number of specific fragments extracted= 3 number of extra gaps= 2 total=29395 # 1bco.145.299 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)N148 (1bco)D550 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. T0287 145 :YGT 1bco 547 :YTL T0287 150 :PLLK 1bco 552 :RFIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29397 # 1v05A.145.43 read from T0287.t06.many.frag # found chain 1v05A in training set Warning: unaligning (T0287)G146 (1v05A)G2674 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1v05A 2673 :H T0287 147 :TNLPLLK 1v05A 2675 :PKTPCEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29399 # 2fj8A.145.74 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 145 :Y 2fj8A 75 :T T0287 147 :TN 2fj8A 77 :SN Number of specific fragments extracted= 2 number of extra gaps= 2 total=29401 # 2jdxA.145.31 read from T0287.t06.many.frag # found chain 2jdxA in template set T0287 145 :YGTNLPLLK 2jdxA 69 :YNEWDPLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29402 # 1ttuA.145.231 read from T0287.t06.many.frag # found chain 1ttuA in template set Warning: unaligning (T0287)G146 (1ttuA)S419 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ttuA)G423 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :Y 1ttuA 418 :S T0287 147 :TNL 1ttuA 420 :TKW T0287 151 :LLK 1ttuA 424 :AFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=29405 # 2f15A.145.38 read from T0287.t06.many.frag # found chain 2f15A in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE in next template residue (2f15A)D111 Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (2f15A)D111 T0287 145 :YGTN 2f15A 106 :IKSH T0287 151 :LLK 2f15A 112 :FVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29407 # 1tul.145.75 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 145 :YGT 1tul 76 :VQN T0287 151 :LLK 1tul 82 :DLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29409 # 1ow1A.145.147 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 145 :YGTNLPLLK 1ow1A 3617 :PGSNQPAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29410 # 1gsa.145.214 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)Y145 (1gsa)D215 because L (left) conformation "forbidden" or filtered. T0287 146 :GTNLPLLK 1gsa 216 :GEPVPYCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29411 # 1t6aA.145.61 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLPL 1t6aA 61 :DGRLYKG T0287 153 :K 1t6aA 69 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=29413 # 1acc.145.542 read from T0287.t06.many.frag # found chain 1acc in template set Warning: unaligning (T0287)K153 (1acc)D551 because P (beta_P) conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1acc 543 :QGKDITEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29414 # 1ok7A.145.44 read from T0287.t06.many.frag # found chain 1ok7A in training set Warning: unaligning (T0287)N148 (1ok7A)D48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1ok7A)M51 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ok7A)M53 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGT 1ok7A 45 :TGT T0287 149 :LP 1ok7A 49 :LE T0287 152 :L 1ok7A 52 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=29417 # 1cfb.145.133 read from T0287.t06.many.frag # found chain 1cfb in template set Warning: unaligning (T0287)Y145 (1cfb)N743 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)G146 (1cfb)A744 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 1cfb 745 :PNF T0287 151 :LLK 1cfb 749 :YYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29419 # 1txvA.145.269 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTNLPLL 1txvA 270 :LDSYYQRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29420 # 1i0vA.145.79 read from T0287.t06.many.frag # found chain 1i0vA in training set Warning: unaligning (T0287)L149 (1i0vA)N84 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1i0vA)G88 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :YGTN 1i0vA 80 :FNEN T0287 150 :PLL 1i0vA 85 :QLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29422 # 1l9vA.145.179 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 1l9vA 180 :LDQNF T0287 151 :LLK 1l9vA 186 :EYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29424 # 1ejfA.145.66 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)G146 (1ejfA)R68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 145 :Y 1ejfA 67 :K T0287 147 :TNL 1ejfA 69 :TDR T0287 151 :LLK 1ejfA 73 :ILC Number of specific fragments extracted= 3 number of extra gaps= 2 total=29427 # 1yq2A.145.936 read from T0287.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. T0287 145 :Y 1yq2A 936 :D T0287 147 :TNLPLLK 1yq2A 938 :AGAPWLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29429 # 2biqA.145.151 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)Y145 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2biqA)G245 Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2biqA)T253 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 149 :LPLL 2biqA 249 :SPIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29431 # 2evrA.145.179 read from T0287.t06.many.frag # found chain 2evrA in template set Warning: unaligning (T0287)P150 (2evrA)K173 because E (beta_S) conformation "forbidden" or filtered. T0287 145 :YGTNL 2evrA 168 :FGTSQ T0287 151 :LLK 2evrA 174 :ATH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29433 # 1k3sA.146.73 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GT 1k3sA 74 :AD T0287 149 :L 1k3sA 77 :T T0287 151 :LLKL 1k3sA 79 :LVAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29436 # 1gttA.146.192 read from T0287.t06.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)G146 (1gttA)A193 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1gttA)E200 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1gttA 194 :EGFPPL T0287 154 :L 1gttA 201 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=29438 # 1l9vA.146.180 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNL 1l9vA 181 :DQNF T0287 151 :LLKL 1l9vA 186 :EYKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29440 # 1xmkA.146.59 read from T0287.t06.many.frag # found chain 1xmkA in template set Warning: unaligning (T0287)T147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xmkA)T349 Warning: unaligning (T0287)N148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xmkA)T349 Warning: unaligning (T0287)L149 (1xmkA)P350 because C (cis) conformation "forbidden" or filtered. T0287 146 :G 1xmkA 347 :G T0287 150 :PLLKL 1xmkA 351 :PIWHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29442 # 1gd0A.146.50 read from T0287.t06.many.frag # found chain 1gd0A in training set T0287 146 :GTNLPLLKL 1gd0A 51 :GSSEPCALC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29443 # 1ru3A.146.346 read from T0287.t06.many.frag # found chain 1ru3A in template set Warning: unaligning (T0287)L152 (1ru3A)F353 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLPL 1ru3A 347 :GGKTPS T0287 153 :KL 1ru3A 354 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29445 # 1ow1A.146.148 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 146 :GTNLPLLKL 1ow1A 3618 :GSNQPAYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29446 # 1kjlA.146.34 read from T0287.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1kjlA)A146 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNLP 1kjlA 139 :KPNAN T0287 152 :L 1kjlA 145 :I T0287 154 :L 1kjlA 147 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=29449 # 2b8mA.146.87 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)G146 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N87 Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=29450 # 1lpbA.146.30 read from T0287.t06.many.frag # found chain 1lpbA in template set Warning: unaligning (T0287)P150 (1lpbA)S35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1lpbA)R38 because E (beta_S) conformation "forbidden" or filtered. T0287 146 :GTNL 1lpbA 31 :DTIL T0287 151 :LL 1lpbA 36 :LS T0287 154 :L 1lpbA 39 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=29453 # 2biqA.146.152 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. T0287 146 :G 2biqA 246 :M T0287 148 :NLPLLKL 2biqA 248 :RSPILTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29455 # 1k8wA.146.298 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTN 1k8wA 286 :GEN T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :L 1k8wA 294 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=29458 # 1nh1A.146.169 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 146 :GTNLPLLKL 1nh1A 170 :GNVIPLNTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29459 # 1gsa.146.215 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)N148 (1gsa)P218 because P (beta_P) conformation "forbidden" or filtered. T0287 146 :GT 1gsa 216 :GE T0287 149 :LPLLKL 1gsa 219 :VPYCLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29461 # 1jiwI.146.71 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)G146 (1jiwI)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :TN 1jiwI 73 :RG T0287 150 :PLLKL 1jiwI 76 :LTLML Number of specific fragments extracted= 2 number of extra gaps= 2 total=29463 # 1jiwI.146.18 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 146 :GTNLPLLKL 1jiwI 19 :QDEAPAICH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29464 # 1ospO.146.74 read from T0287.t06.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)L149 (1ospO)L94 because L (left) conformation "forbidden" or filtered. T0287 146 :GTN 1ospO 91 :SDD T0287 150 :PLLKL 1ospO 95 :GQTTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29466 # 1uv4A.146.30 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)G146 (1uv4A)L31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. T0287 147 :TNLP 1uv4A 32 :TEER T0287 152 :L 1uv4A 37 :L T0287 154 :L 1uv4A 39 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=29469 # 1bco.146.300 read from T0287.t06.many.frag # found chain 1bco in template set Warning: unaligning (T0287)G146 (1bco)T548 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1bco)G551 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1bco)C555 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1bco 549 :LD T0287 150 :PLL 1bco 552 :RFI T0287 154 :L 1bco 556 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=29472 # 1tul.146.76 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 146 :GT 1tul 77 :QN T0287 151 :LLKL 1tul 82 :DLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29474 # 1o59A.146.118 read from T0287.t06.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 146 :GTNLPL 1o59A 107 :GNHAPF T0287 154 :L 1o59A 115 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=29476 # 1yq2A.146.937 read from T0287.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)G146 (1yq2A)R937 because D (zeta) conformation "forbidden" or filtered. T0287 147 :TNLPLLKL 1yq2A 938 :AGAPWLRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29477 # 2fj8A.146.75 read from T0287.t06.many.frag # found chain 2fj8A in template set Warning: unaligning (T0287)G146 (2fj8A)R76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2fj8A)N78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (2fj8A)P79 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fj8A)T81 Warning: unaligning (T0287)L151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fj8A)T81 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (2fj8A)R83 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (2fj8A)R83 T0287 147 :T 2fj8A 77 :S T0287 154 :L 2fj8A 84 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=29479 # 1t6aA.146.62 read from T0287.t06.many.frag # found chain 1t6aA in template set T0287 146 :GTNLPLLKL 1t6aA 62 :GRLYKGMAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29480 # 1wnyA.146.70 read from T0287.t06.many.frag # found chain 1wnyA in template set Warning: unaligning (T0287)G146 (1wnyA)G270 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1wnyA)K277 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLPLL 1wnyA 271 :EGTPVL T0287 154 :L 1wnyA 278 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=29482 # 1jl0A.146.233 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 146 :GTNLPLLKL 1jl0A 234 :KSDGTYWTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29483 # 1txvA.146.270 read from T0287.t06.many.frag # found chain 1txvA in template set Warning: unaligning (T0287)N148 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L149 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GT 1txvA 271 :DS T0287 150 :PLL 1txvA 275 :QRL T0287 154 :L 1txvA 279 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=29486 # 1p90A.146.23 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNLP 1p90A 122 :FGSCL T0287 152 :LKL 1p90A 128 :FLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29488 # 1ejfA.146.67 read from T0287.t06.many.frag # found chain 1ejfA in template set Warning: unaligning (T0287)P150 (1ejfA)S72 because Y (epsilon') conformation "forbidden" or filtered. T0287 146 :GTNL 1ejfA 68 :RTDR T0287 151 :LLKL 1ejfA 73 :ILCC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29490 # 1v4pA.146.96 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)G146 (1v4pA)P97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKL 1v4pA 102 :ILKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29492 # 1gttA.147.193 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 147 :TNLPLLKLF 1gttA 194 :EGFPPLENP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29493 # 2b8mA.147.88 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)N89 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE Number of specific fragments extracted= 1 number of extra gaps= 2 total=29494 # 1nh1A.147.170 read from T0287.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)K153 (1nh1A)T177 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNLPLL 1nh1A 171 :NVIPLN T0287 154 :LF 1nh1A 178 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29496 # 1l9vA.147.181 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 1l9vA 182 :QNF T0287 151 :LLKLF 1l9vA 186 :EYKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29498 # 2biqA.147.153 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)T147 (2biqA)N247 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLF 2biqA 249 :SPILTII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29499 # 1k3sA.147.74 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k3sA)A81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k3sA)L82 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 1k3sA 75 :DNT T0287 151 :LL 1k3sA 79 :LV T0287 155 :F 1k3sA 83 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=29502 # 1ow1A.147.149 read from T0287.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)N148 (1ow1A)N3620 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1ow1A 3619 :S T0287 149 :LPLLKLF 1ow1A 3621 :QPAYVLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29504 # 1uv4A.147.31 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. T0287 147 :TNLP 1uv4A 32 :TEER T0287 152 :LKLF 1uv4A 37 :LRVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29506 # 1k8wA.147.299 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)L149 (1k8wA)G289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TN 1k8wA 287 :EN T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LF 1k8wA 294 :MG Number of specific fragments extracted= 3 number of extra gaps= 2 total=29509 # 1kjlA.147.35 read from T0287.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1kjlA 140 :PNAN T0287 152 :LKLF 1kjlA 145 :IALD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29511 # 1v4pA.147.97 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 147 :TNL 1v4pA 98 :EDV T0287 151 :LLKLF 1v4pA 102 :ILKVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29513 # 1ospO.147.75 read from T0287.t06.many.frag # found chain 1ospO in template set T0287 147 :TNLPLLKLF 1ospO 92 :DDLGQTTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29514 # 1jl0A.147.234 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 147 :TNLPLLKLF 1jl0A 235 :SDGTYWTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29515 # 2czrA.147.66 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2czrA)G63 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNL 2czrA 59 :KDV T0287 152 :LKLF 2czrA 64 :IHIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29517 # 1gsa.147.216 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 147 :TNLPLLKLF 1gsa 217 :EPVPYCLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29518 # 1fjgP.147.11 read from T0287.t06.many.frag # found chain 1fjgP in template set T0287 147 :TNLPLLKLF 1fjgP 12 :KHNPHYRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29519 # 1jiwI.147.19 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)T147 (1jiwI)D20 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1jiwI)C26 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLPLL 1jiwI 21 :EAPAI T0287 154 :LF 1jiwI 27 :HL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29521 # 1gd0A.147.51 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1gd0A 52 :SSEP T0287 152 :LKLF 1gd0A 57 :ALCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29523 # 1t6aA.147.63 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1t6aA)M68 because Y (epsilon') conformation "forbidden" or filtered. T0287 147 :TNLP 1t6aA 63 :RLYK T0287 153 :KLF 1t6aA 69 :AIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29525 # 1cid.147.123 read from T0287.t06.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 T0287 147 :TNL 1cid 124 :PTS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29527 # 1y12A.147.79 read from T0287.t06.many.frag # found chain 1y12A in template set T0287 147 :TNLPLLKLF 1y12A 77 :KHYPQAKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29528 # 1tul.147.77 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1tul 78 :N T0287 151 :LLKLF 1tul 82 :DLNAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29530 # 1o59A.147.119 read from T0287.t06.many.frag # found chain 1o59A in template set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1o59A)S114 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1o59A)S114 T0287 147 :TNLPL 1o59A 108 :NHAPF T0287 154 :LF 1o59A 115 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29532 # 2a2cA.147.421 read from T0287.t06.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)T147 because of BadResidue code BAD_PEPTIDE in next template residue (2a2cA)G403 Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2a2cA)G406 because S (epsilon) conformation "forbidden" or filtered. T0287 150 :P 2a2cA 405 :G T0287 152 :LKLF 2a2cA 407 :CTVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=29534 # 2a8eA.147.164 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. T0287 147 :TNL 2a8eA 165 :KKA T0287 151 :LLKLF 2a8eA 169 :LLCGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29536 # 1p90A.147.24 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)N148 (1p90A)S124 because G (3-10) conformation "forbidden" or filtered. T0287 147 :T 1p90A 123 :G T0287 149 :LPLLKLF 1p90A 125 :CLRFLVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29538 # 1ysqA.147.141 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)T147 (1ysqA)G140 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPL 1ysqA 141 :RVPY T0287 153 :KLF 1ysqA 146 :VSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29540 # 1i4wA.147.248 read from T0287.t06.many.frag # found chain 1i4wA in template set T0287 147 :TNLPLLKLF 1i4wA 237 :TKGKPIALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29541 # 1ru3A.147.347 read from T0287.t06.many.frag # found chain 1ru3A in template set T0287 147 :TNLPLLKLF 1ru3A 348 :GKTPSFELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29542 # 1yq2A.147.938 read from T0287.t06.many.frag # found chain 1yq2A in template set Warning: unaligning (T0287)N148 (1yq2A)G939 because T (delta_L) conformation "forbidden" or filtered. T0287 147 :T 1yq2A 938 :A T0287 149 :LPLLKLF 1yq2A 940 :APWLRID Number of specific fragments extracted= 2 number of extra gaps= 1 total=29544 # 2b8mA.148.89 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)N89 Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :V 2b8mA 97 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=29546 # 1nh1A.148.171 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 148 :NLPLLKLFV 1nh1A 172 :VIPLNTFRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29547 # 1gttA.148.194 read from T0287.t06.many.frag # found chain 1gttA in training set Warning: unaligning (T0287)N148 (1gttA)G195 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1gttA 196 :FPPLENPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29548 # 1l9vA.148.182 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)N148 (1l9vA)N183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFV 1l9vA 186 :EYKVTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29550 # 2biqA.148.154 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)N148 (2biqA)R248 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 2biqA 249 :SPILTIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29551 # 1uv4A.148.32 read from T0287.t06.many.frag # found chain 1uv4A in training set T0287 148 :NLPLLKLFV 1uv4A 33 :EERGLRVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29552 # 1ow1A.148.150 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 148 :NLPLLKLFV 1ow1A 3620 :NQPAYVLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29553 # 1jl0A.148.235 read from T0287.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 148 :N 1jl0A 236 :D T0287 150 :PLLKLFV 1jl0A 238 :TYWTIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29555 # 1k8wA.148.300 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLPLL 1k8wA 288 :NGKFI T0287 154 :LFV 1k8wA 294 :MGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29557 # 2a2cA.148.422 read from T0287.t06.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE at template residue (2a2cA)G403 Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2a2cA)G406 because S (epsilon) conformation "forbidden" or filtered. T0287 150 :P 2a2cA 405 :G T0287 152 :LKLFV 2a2cA 407 :CTVSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=29559 # 1gsa.148.217 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 148 :NLPLLKLFV 1gsa 218 :PVPYCLARI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29560 # 1k3sA.148.75 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)N148 (1k3sA)N76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LLKLFV 1k3sA 79 :LVALYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=29562 # 1kjlA.148.36 read from T0287.t06.many.frag # found chain 1kjlA in template set Warning: unaligning (T0287)L151 (1kjlA)R144 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1kjlA)A146 because E (beta_S) conformation "forbidden" or filtered. T0287 148 :NLP 1kjlA 141 :NAN T0287 152 :L 1kjlA 145 :I T0287 154 :LFV 1kjlA 147 :LDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29565 # 1fjgP.148.12 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)N148 (1fjgP)H13 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1fjgP 14 :NPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29566 # 1vr8A.148.56 read from T0287.t06.many.frag # found chain 1vr8A in training set T0287 148 :NLPLLKLFV 1vr8A 69 :EYGPVFLYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29567 # 1v4pA.148.98 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 148 :NL 1v4pA 99 :DV T0287 151 :LLKLFV 1v4pA 102 :ILKVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29569 # 1cid.148.124 read from T0287.t06.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 T0287 148 :NL 1cid 125 :TS T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29571 # 1tul.148.78 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)N148 because of BadResidue code BAD_PEPTIDE in next template residue (1tul)E80 Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1tul 82 :DLNAIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=29572 # 2btiA.148.27 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2btiA)R31 because P (beta_P) conformation "forbidden" or filtered. T0287 148 :NL 2btiA 26 :KG T0287 151 :LL 2btiA 29 :QV T0287 154 :LFV 2btiA 32 :IGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29575 # 1i4wA.148.249 read from T0287.t06.many.frag # found chain 1i4wA in template set Warning: unaligning (T0287)N148 (1i4wA)K238 because L (left) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1i4wA 239 :GKPIALVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29576 # 2czrA.148.67 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)P150 (2czrA)N62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2czrA)G63 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NL 2czrA 60 :DV T0287 152 :LKLFV 2czrA 64 :IHIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29578 # 1ospO.148.76 read from T0287.t06.many.frag # found chain 1ospO in template set Warning: unaligning (T0287)L149 (1ospO)L94 because L (left) conformation "forbidden" or filtered. T0287 148 :N 1ospO 93 :D T0287 150 :PLLKLFV 1ospO 95 :GQTTLEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29580 # 1gd0A.148.52 read from T0287.t06.many.frag # found chain 1gd0A in training set Warning: unaligning (T0287)L151 (1gd0A)C56 because Y (epsilon') conformation "forbidden" or filtered. T0287 148 :NLP 1gd0A 53 :SEP T0287 152 :LKLFV 1gd0A 57 :ALCSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29582 # 1y12A.148.80 read from T0287.t06.many.frag # found chain 1y12A in template set T0287 148 :NLPLLKLFV 1y12A 78 :HYPQAKLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29583 # 2a8eA.148.165 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)N148 (2a8eA)K166 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LLK 2a8eA 169 :LLC T0287 155 :FV 2a8eA 173 :IQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=29586 # 1f8eA.148.105 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)N148 (1f8eA)G186 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)P150 (1f8eA)T188 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 1f8eA 187 :K T0287 151 :LLKLFV 1f8eA 189 :RMSICI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29588 # 1jiwI.148.20 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 148 :NLPLLKLFV 1jiwI 21 :EAPAICHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29589 # 1sqwA.148.136 read from T0287.t06.many.frag # found chain 1sqwA in template set T0287 148 :NLPLLKLFV 1sqwA 137 :ADIPLGFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29590 # 1vs0A.148.209 read from T0287.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1vs0A 663 :LLMGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29591 # 1ysqA.148.142 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)N148 (1ysqA)R141 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1ysqA 142 :VPYAVSIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29592 # 1nh1A.149.172 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 149 :LPLLKLFVM 1nh1A 173 :IPLNTFRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29593 # 1l9vA.149.183 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1l9vA 184 :F T0287 151 :LLKLFVM 1l9vA 186 :EYKVTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29595 # 2b8mA.149.90 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 149 :LPLLK 2b8mA 90 :SDILE T0287 156 :VM 2b8mA 97 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29597 # 1uv4A.149.33 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1uv4A 34 :ERGLRVLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29598 # 2biqA.149.155 read from T0287.t06.many.frag # found chain 2biqA in template set Warning: unaligning (T0287)K153 (2biqA)T253 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :LPLL 2biqA 249 :SPIL T0287 154 :LFVM 2biqA 254 :IITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29600 # 1vr8A.149.57 read from T0287.t06.many.frag # found chain 1vr8A in training set T0287 149 :LPLLKLFVM 1vr8A 70 :YGPVFLYVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29601 # 1ow1A.149.151 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 149 :LPLLKLFVM 1ow1A 3621 :QPAYVLQIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29602 # 1k3sA.149.76 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k3sA 77 :T T0287 151 :LLKLFVM 1k3sA 79 :LVALYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29604 # 1jl0A.149.236 read from T0287.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)L149 (1jl0A)G237 because T (delta_L) conformation "forbidden" or filtered. T0287 150 :PLLKLFVM 1jl0A 238 :TYWTIAIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29605 # 1fjgP.149.13 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1fjgP 14 :NPHYRIVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29606 # 1gsa.149.218 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 149 :LPLLKLFVM 1gsa 219 :VPYCLARIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29607 # 1gttA.149.195 read from T0287.t06.many.frag # found chain 1gttA in training set T0287 149 :LPLLKLFVM 1gttA 196 :FPPLENPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29608 # 2a8eA.149.166 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (2a8eA)C171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :L 2a8eA 167 :A T0287 151 :LL 2a8eA 169 :LL T0287 155 :FVM 2a8eA 173 :IQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29611 # 1no5A.149.43 read from T0287.t06.many.frag # found chain 1no5A in training set T0287 149 :LPLLKLFVM 1no5A 44 :YSDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=29612 # 1v4pA.149.99 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 1v4pA 100 :V T0287 151 :LLKLFVM 1v4pA 102 :ILKVVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29614 # 2btiA.149.28 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 149 :L 2btiA 27 :G T0287 151 :LLKLFVM 2btiA 29 :QVRIGVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29616 # 1p90A.149.26 read from T0287.t06.many.frag # found chain 1p90A in training set T0287 149 :LPLLKLFVM 1p90A 125 :CLRFLVYQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29617 # 1jiwI.149.21 read from T0287.t06.many.frag # found chain 1jiwI in training set Warning: unaligning (T0287)M157 (1jiwI)L30 because P (beta_P) conformation "forbidden" or filtered. T0287 149 :LPLLKLFV 1jiwI 22 :APAICHLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29618 # 1tul.149.79 read from T0287.t06.many.frag # found chain 1tul in template set Warning: unaligning (T0287)L149 because of BadResidue code BAD_PEPTIDE at template residue (1tul)E80 Warning: unaligning (T0287)P150 (1tul)Y81 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVM 1tul 82 :DLNAIMF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29619 # 1i4wA.149.250 read from T0287.t06.many.frag # found chain 1i4wA in template set T0287 149 :LPLLKLFVM 1i4wA 239 :GKPIALVEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29620 # 1k8wA.149.301 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 149 :LPLL 1k8wA 289 :GKFI T0287 154 :LFVM 1k8wA 294 :MGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29622 # 2a2cA.149.423 read from T0287.t06.many.frag # found chain 2a2cA in template set Warning: unaligning (T0287)L149 (2a2cA)W404 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (2a2cA)G406 because S (epsilon) conformation "forbidden" or filtered. T0287 150 :P 2a2cA 405 :G T0287 152 :LKLFVM 2a2cA 407 :CTVSMV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29624 # 1vl7A.149.75 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 149 :LPLLKLFVM 1vl7A 64 :NPLVNVLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29625 # 1cid.149.125 read from T0287.t06.many.frag # found chain 1cid in template set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K128 Warning: unaligning (T0287)L151 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K128 Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE at template residue (1cid)M129 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE in next template residue (1cid)K134 Warning: unaligning (T0287)M157 because of BadResidue code BAD_PEPTIDE at template residue (1cid)K134 T0287 149 :L 1cid 126 :S T0287 153 :KLF 1cid 130 :RLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29627 # 1vs0A.149.210 read from T0287.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)L149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vs0A)V660 Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVM 1vs0A 663 :LLMGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29628 # 1ftrA.149.69 read from T0287.t06.many.frag # found chain 1ftrA in training set T0287 149 :LPLLKLFVM 1ftrA 70 :RPGVTIMIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29629 # 1ry9A.149.107 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1ry9A 96 :E T0287 151 :LLKLFVM 1ry9A 98 :LQLRVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29631 # 1k2xA.149.77 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. T0287 149 :L 1k2xA 79 :T T0287 151 :LLKLFVM 1k2xA 81 :ELDACVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29633 # 1kjlA.149.37 read from T0287.t06.many.frag # found chain 1kjlA in template set T0287 149 :LPLLKLFVM 1kjlA 142 :ANRIALDFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29634 # 1vqoS.149.59 read from T0287.t06.many.frag # found chain 1vqoS in template set Warning: unaligning (T0287)P150 (1vqoS)G60 because T (delta_L) conformation "forbidden" or filtered. T0287 149 :L 1vqoS 59 :D T0287 151 :LLKLFVM 1vqoS 61 :EKKAVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29636 # 1nh1A.150.173 read from T0287.t06.many.frag # found chain 1nh1A in template set Warning: unaligning (T0287)T158 (1nh1A)T182 because G (3-10) conformation "forbidden" or filtered. T0287 150 :PLLKLFVM 1nh1A 174 :PLNTFRVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29637 # 1l9vA.150.184 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)P150 (1l9vA)I185 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1l9vA 186 :EYKVTLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29638 # 2biqA.150.156 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 150 :PLLKLFVMT 2biqA 250 :PILTIITLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29639 # 1uv4A.150.34 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)L151 (1uv4A)G36 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1uv4A)S42 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1uv4A 35 :R T0287 152 :LKLFV 1uv4A 37 :LRVLK T0287 158 :T 1uv4A 43 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=29642 # 1vr8A.150.58 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)P150 (1vr8A)G71 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1vr8A 72 :PVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29643 # 2b8mA.150.91 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 150 :PLLK 2b8mA 91 :DILE T0287 156 :VMT 2b8mA 97 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29645 # 1k3sA.150.77 read from T0287.t06.many.frag # found chain 1k3sA in template set Warning: unaligning (T0287)P150 (1k3sA)A78 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1k3sA 79 :LVALYRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=29646 # 1ry9A.150.108 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)P150 (1ry9A)Y97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1ry9A)L100 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LL 1ry9A 98 :LQ T0287 154 :LFVMT 1ry9A 101 :RVVIK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29648 # 2a8eA.150.167 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)P150 (2a8eA)E168 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2a8eA 169 :LLCGIQLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=29649 # 1ow1A.150.152 read from T0287.t06.many.frag # found chain 1ow1A in training set T0287 150 :PLLKLFVMT 1ow1A 3622 :PAYVLQIFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29650 # 1fjgP.150.14 read from T0287.t06.many.frag # found chain 1fjgP in template set T0287 150 :PLLKLFVMT 1fjgP 15 :PHYRIVVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29651 # 1gsa.150.219 read from T0287.t06.many.frag # found chain 1gsa in template set T0287 150 :PLLKLFVMT 1gsa 220 :PYCLARIPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29652 # 1no5A.150.44 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 T0287 150 :PLLKLFVM 1no5A 45 :SDLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29653 # 1p90A.150.27 read from T0287.t06.many.frag # found chain 1p90A in training set T0287 150 :PLLKLFVMT 1p90A 126 :LRFLVYQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29654 # 1vl7A.150.76 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 150 :PLLKLFVMT 1vl7A 65 :PLVNVLFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29655 # 1g60A.150.115 read from T0287.t06.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)P150 because of BadResidue code BAD_PEPTIDE at template residue (1g60A)Q116 T0287 151 :LLKLFVMT 1g60A 117 :ETILFFSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29656 # 1v4pA.150.100 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)P150 (1v4pA)R101 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29657 # 1jl0A.150.237 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 150 :PLLKLFVMT 1jl0A 238 :TYWTIAITP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29658 # 1k8wA.150.302 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PLL 1k8wA 290 :KFI T0287 154 :LFVMT 1k8wA 294 :MGEID Number of specific fragments extracted= 2 number of extra gaps= 1 total=29660 # 1ftrA.150.70 read from T0287.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1ftrA 71 :P T0287 152 :LKLFVMT 1ftrA 73 :VTIMIGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29662 # 1jiwI.150.22 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 150 :PLLKLFVMT 1jiwI 23 :PAICHLELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29663 # 1t6aA.150.66 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)L151 (1t6aA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :P 1t6aA 66 :K T0287 152 :LKLFVMT 1t6aA 68 :MAISVRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29665 # 1vs0A.150.211 read from T0287.t06.many.frag # found chain 1vs0A in template set Warning: unaligning (T0287)P150 (1vs0A)G661 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1vs0A)S662 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1vs0A)P668 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFV 1vs0A 663 :LLMGI T0287 158 :T 1vs0A 669 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=29667 # 2btiA.150.29 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)P150 (2btiA)N28 because G (3-10) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2btiA 29 :QVRIGVNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29668 # 1k2xA.150.78 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)P150 (1k2xA)H80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMT 1k2xA 85 :CVMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29670 # 1wvhA.150.107 read from T0287.t06.many.frag # found chain 1wvhA in template set Warning: unaligning (T0287)P150 (1wvhA)N1712 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1wvhA 1713 :VCHLFAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29671 # 1w0pA.150.712 read from T0287.t06.many.frag # found chain 1w0pA in training set Warning: unaligning (T0287)P150 (1w0pA)Q713 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)L151 (1w0pA)N714 because L (left) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1w0pA 715 :LGLWFSF Number of specific fragments extracted= 1 number of extra gaps= 1 total=29672 # 2jdxA.150.36 read from T0287.t06.many.frag # found chain 2jdxA in template set Warning: unaligning (T0287)M157 (2jdxA)G81 because P (beta_P) conformation "forbidden" or filtered. T0287 150 :PLLKLFV 2jdxA 74 :PLEEVIV T0287 158 :T 2jdxA 82 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=29674 # 1ysqA.150.144 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 150 :PL 1ysqA 143 :PY T0287 153 :KLFV 1ysqA 146 :VSIS T0287 158 :T 1ysqA 151 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=29677 # 1i4wA.150.251 read from T0287.t06.many.frag # found chain 1i4wA in template set T0287 150 :PLLKLFVMT 1i4wA 240 :KPIALVEMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29678 # 1nh1A.151.174 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 151 :LLKLFVMTD 1nh1A 175 :LNTFRVATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29679 # 1l9vA.151.185 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 151 :LLKLFVMTD 1l9vA 186 :EYKVTLNED Number of specific fragments extracted= 1 number of extra gaps= 0 total=29680 # 2biqA.151.157 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 151 :LLKLFVMTD 2biqA 251 :ILTIITLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=29681 # 1ry9A.151.109 read from T0287.t06.many.frag # found chain 1ry9A in template set T0287 151 :LLKLFVMTD 1ry9A 98 :LQLRVVIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29682 # 1vr8A.151.59 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1vr8A 72 :PVFLYVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29683 # 1uv4A.151.35 read from T0287.t06.many.frag # found chain 1uv4A in training set T0287 151 :LLKLFVMTD 1uv4A 36 :GLRVLKSSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29684 # 1vl7A.151.77 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 151 :LLKLFVMTD 1vl7A 66 :LVNVLFVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29685 # 1no5A.151.45 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 T0287 151 :LLKLFVM 1no5A 46 :DLDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29686 # 2a8eA.151.168 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 151 :LLKLFVMTD 2a8eA 169 :LLCGIQLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29687 # 1k3sA.151.78 read from T0287.t06.many.frag # found chain 1k3sA in template set T0287 151 :LLKLFVMTD 1k3sA 79 :LVALYRLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29688 # 1gsa.151.220 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)K153 (1gsa)L223 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)M157 (1gsa)P227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. T0287 151 :LL 1gsa 221 :YC T0287 154 :LFV 1gsa 224 :ARI T0287 158 :T 1gsa 228 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=29691 # 2b8mA.151.92 read from T0287.t06.many.frag # found chain 2b8mA in template set Warning: unaligning (T0287)L154 because of BadResidue code BAD_PEPTIDE in next template residue (2b8mA)F96 Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE at template residue (2b8mA)F96 T0287 151 :LLK 2b8mA 92 :ILE T0287 156 :VMTD 2b8mA 97 :VVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29693 # 1jl0A.151.238 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 151 :LLKLFVMTD 1jl0A 239 :YWTIAITPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29694 # 1fjgP.151.15 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)M157 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1fjgP 16 :HYRIVV T0287 158 :TD 1fjgP 23 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29696 # 1k8wA.151.303 read from T0287.t06.many.frag # found chain 1k8wA in template set T0287 151 :LLKLFVMTD 1k8wA 291 :FIGMGEIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29697 # 1ow1A.151.153 read from T0287.t06.many.frag # found chain 1ow1A in training set Warning: unaligning (T0287)M157 (1ow1A)F3629 because P (beta_P) conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ow1A 3623 :AYVLQI T0287 158 :TD 1ow1A 3630 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29699 # 1wd6A.151.66 read from T0287.t06.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)L152 (1wd6A)G51 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :L 1wd6A 50 :A T0287 153 :KLFVMTD 1wd6A 52 :GIYLFTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29701 # 1g60A.151.116 read from T0287.t06.many.frag # found chain 1g60A in training set T0287 151 :LLKLFVMTD 1g60A 117 :ETILFFSKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29702 # 1p90A.151.28 read from T0287.t06.many.frag # found chain 1p90A in training set Warning: unaligning (T0287)L151 (1p90A)R127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K153 (1p90A)L129 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :L 1p90A 128 :F T0287 154 :LFVMTD 1p90A 130 :VYQVSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29704 # 1wvhA.151.108 read from T0287.t06.many.frag # found chain 1wvhA in template set T0287 151 :LLKLFVMTD 1wvhA 1713 :VCHLFAELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29705 # 1ysqA.151.145 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)L152 (1ysqA)A145 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :L 1ysqA 144 :Y T0287 153 :KLFVMTD 1ysqA 146 :VSISLST Number of specific fragments extracted= 2 number of extra gaps= 1 total=29707 # 1k2xA.151.79 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLK 1k2xA 81 :ELD T0287 155 :FVMTD 1k2xA 85 :CVMDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29709 # 1ifrA.151.19 read from T0287.t06.many.frag # found chain 1ifrA in training set T0287 151 :LLKLFVMTD 1ifrA 451 :FVRLRNKSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29710 # 1ftrA.151.71 read from T0287.t06.many.frag # found chain 1ftrA in training set Warning: unaligning (T0287)L151 (1ftrA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMTD 1ftrA 73 :VTIMIGHN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29711 # 1v4pA.151.101 read from T0287.t06.many.frag # found chain 1v4pA in training set Warning: unaligning (T0287)D159 (1v4pA)D110 because L (left) conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 1v4pA 102 :ILKVVVIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29712 # 2cxhA.151.98 read from T0287.t06.many.frag # found chain 2cxhA in template set Warning: unaligning (T0287)D159 (2cxhA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFVMT 2cxhA 79 :IIRVYAVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29713 # 1vetA.151.87 read from T0287.t06.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)M157 (1vetA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1vetA 88 :LVVSFI T0287 158 :TD 1vetA 95 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29715 # 1ikoP.151.48 read from T0287.t06.many.frag # found chain 1ikoP in template set Warning: unaligning (T0287)M157 (1ikoP)V84 because Y (epsilon') conformation "forbidden" or filtered. T0287 151 :LLKLFV 1ikoP 78 :YYKVYM T0287 158 :TD 1ikoP 85 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29717 # 2acaA.151.135 read from T0287.t06.many.frag # found chain 2acaA in template set Warning: unaligning (T0287)K153 (2acaA)E138 because E (beta_S) conformation "forbidden" or filtered. T0287 151 :LL 2acaA 136 :FA T0287 154 :LFVMTD 2acaA 139 :FAIMTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29719 # 1yu0A.151.107 read from T0287.t06.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 T0287 151 :LLKL 1yu0A 108 :DYAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29721 # 1l9vA.152.186 read from T0287.t06.many.frag # found chain 1l9vA in template set T0287 152 :LKLFVMTDE 1l9vA 187 :YKVTLNEDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29722 # 1nh1A.152.175 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 152 :LKLFVMTDE 1nh1A 176 :NTFRVATDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29723 # 1no5A.152.46 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 T0287 152 :LKLFVM 1no5A 47 :LDLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29724 # 1vl7A.152.78 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 152 :LKLFVMTDE 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29725 # 1ry9A.152.110 read from T0287.t06.many.frag # found chain 1ry9A in template set T0287 152 :LKLFVMTDE 1ry9A 99 :QLRVVIKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29726 # 1jl0A.152.239 read from T0287.t06.many.frag # found chain 1jl0A in training set Warning: unaligning (T0287)D159 (1jl0A)E247 because P (beta_P) conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1jl0A 240 :WTIAITP T0287 160 :E 1jl0A 248 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29728 # 1vr8A.152.60 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1vr8A 73 :VFLYVYK T0287 160 :E 1vr8A 81 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29730 # 1uv4A.152.36 read from T0287.t06.many.frag # found chain 1uv4A in training set Warning: unaligning (T0287)K153 (1uv4A)R38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1uv4A)A45 because L (left) conformation "forbidden" or filtered. T0287 152 :L 1uv4A 37 :L T0287 154 :LFVMTD 1uv4A 39 :VLKSSD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29732 # 1ifrA.152.20 read from T0287.t06.many.frag # found chain 1ifrA in training set T0287 152 :LKLFVMTDE 1ifrA 452 :VRLRNKSNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29733 # 1fjgP.152.16 read from T0287.t06.many.frag # found chain 1fjgP in template set Warning: unaligning (T0287)K153 (1fjgP)R18 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 1fjgP 17 :Y T0287 154 :LFVMTDE 1fjgP 19 :IVVTDAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29735 # 2a8eA.152.169 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)K153 (2a8eA)C171 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 2a8eA 170 :L T0287 154 :LFVMTDE 2a8eA 172 :GIQLQKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29737 # 2biqA.152.158 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 152 :LKLFVMTDE 2biqA 252 :LTIITLEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29738 # 1wd6A.152.67 read from T0287.t06.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :L 1wd6A 51 :G T0287 154 :LFVMTDE 1wd6A 53 :IYLFTDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29740 # 1wvhA.152.109 read from T0287.t06.many.frag # found chain 1wvhA in template set T0287 152 :LKLFVMTDE 1wvhA 1714 :CHLFAELDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29741 # 1gsa.152.221 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1gsa)G230 because N (gamma') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1gsa 222 :CLARIPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=29742 # 1k8wA.152.304 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :L 1k8wA 292 :I T0287 154 :LFVMTDE 1k8wA 294 :MGEIDDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29744 # 2c60A.152.67 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 T0287 152 :LKLFV 2c60A 81 :LDLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29746 # 1yu0A.152.108 read from T0287.t06.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 152 :LKL 1yu0A 109 :YAI T0287 157 :MTD 1yu0A 114 :CDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=29748 # 2cy5A.152.94 read from T0287.t06.many.frag # found chain 2cy5A in template set T0287 152 :LKLFVMTDE 2cy5A 120 :LLLVCQEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29749 # 1vetA.152.88 read from T0287.t06.many.frag # found chain 1vetA in template set Warning: unaligning (T0287)K153 (1vetA)V90 because E (beta_S) conformation "forbidden" or filtered. T0287 152 :L 1vetA 89 :V T0287 154 :LFVMTDE 1vetA 91 :SFIASSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29751 # 1g60A.152.117 read from T0287.t06.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFVMT 1g60A 118 :TILFFSK T0287 160 :E 1g60A 126 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=29753 # 1f8eA.152.109 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)T158 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0287 152 :LKLFV 1f8eA 190 :MSICI T0287 159 :DE 1f8eA 197 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29755 # 1k2xA.152.80 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LK 1k2xA 82 :LD T0287 155 :FVMTDE 1k2xA 85 :CVMDGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29757 # 1yb3A.152.83 read from T0287.t06.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)L152 because of BadResidue code BAD_PEPTIDE in next template residue (1yb3A)F77 Warning: unaligning (T0287)K153 because of BadResidue code BAD_PEPTIDE at template residue (1yb3A)F77 T0287 154 :LFVMTDE 1yb3A 78 :VFAFPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29758 # 2cxhA.152.99 read from T0287.t06.many.frag # found chain 2cxhA in template set T0287 152 :LKLFVMTDE 2cxhA 80 :IRVYAVEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29759 # 1k3sA.152.79 read from T0287.t06.many.frag # found chain 1k3sA in template set T0287 152 :LKLFVMTDE 1k3sA 80 :VALYRLPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29760 # 1dp4A.152.375 read from T0287.t06.many.frag # found chain 1dp4A in template set T0287 152 :LKLFVMTDE 1dp4A 376 :FSLWDMDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29761 # 1o4yA.152.118 read from T0287.t06.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)F155 (1o4yA)W138 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKL 1o4yA 135 :NAF T0287 156 :VMTDE 1o4yA 139 :TLTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29763 # 1ysqA.152.146 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 152 :LKLFV 1ysqA 145 :AVSIS T0287 158 :TDE 1ysqA 151 :STS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29765 # 1tvgA.152.81 read from T0287.t06.many.frag # found chain 1tvgA in training set T0287 152 :LKLFVMTDE 1tvgA 72 :LKIEKSTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29766 # 1no5A.153.47 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 T0287 153 :KLFVM 1no5A 48 :DLAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29767 # 1ry9A.153.111 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)M157 (1ry9A)I104 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFV 1ry9A 100 :LRVV T0287 158 :TDEE 1ry9A 105 :KDDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29769 # 1jl0A.153.240 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 153 :KLFVMTDEE 1jl0A 241 :TIAITPEPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29770 # 1l9vA.153.187 read from T0287.t06.many.frag # found chain 1l9vA in template set Warning: unaligning (T0287)E161 (1l9vA)P196 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 1l9vA 188 :KVTLNEDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29771 # 1vl7A.153.79 read from T0287.t06.many.frag # found chain 1vl7A in training set T0287 153 :KLFVMTDEE 1vl7A 68 :NVLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29772 # 2biqA.153.159 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 153 :KLFVMTDEE 2biqA 253 :TIITLEDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29773 # 1wd6A.153.68 read from T0287.t06.many.frag # found chain 1wd6A in template set Warning: unaligning (T0287)K153 (1wd6A)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1wd6A)D58 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1wd6A 53 :IYLFT T0287 160 :EE 1wd6A 59 :EK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29775 # 1g60A.153.118 read from T0287.t06.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1g60A 119 :ILFFSK T0287 160 :EE 1g60A 126 :KN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29777 # 2c60A.153.68 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 T0287 153 :KLFV 2c60A 82 :DLHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29779 # 2czrA.153.72 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 153 :KLFVMTDEE 2czrA 65 :HIVAIPDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29780 # 2a8eA.153.170 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 153 :KLFVMTDEE 2a8eA 171 :CGIQLQKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29781 # 1dp4A.153.376 read from T0287.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0287)K153 (1dp4A)S377 because E (beta_S) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1dp4A 378 :LWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 1 total=29782 # 1nh1A.153.176 read from T0287.t06.many.frag # found chain 1nh1A in template set T0287 153 :KLFVMTDEE 1nh1A 177 :TFRVATDTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29783 # 3sil.153.139 read from T0287.t06.many.frag # found chain 3sil in training set Warning: unaligning (T0287)E161 (3sil)G151 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KLFVMTDE 3sil 143 :VLYKSTDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29784 # 1o4yA.153.119 read from T0287.t06.many.frag # found chain 1o4yA in training set T0287 153 :KLFVMTDEE 1o4yA 136 :AFWTLTDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29785 # 1h5rA.153.174 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)K153 (1h5rA)G175 because G (3-10) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1h5rA 176 :LYFYDNDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29786 # 1wvhA.153.110 read from T0287.t06.many.frag # found chain 1wvhA in template set T0287 153 :KLFVMTDEE 1wvhA 1715 :HLFAELDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29787 # 1vr8A.153.61 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1vr8A 74 :FLYVYK T0287 160 :EE 1vr8A 81 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29789 # 1ysqA.153.147 read from T0287.t06.many.frag # found chain 1ysqA in training set T0287 153 :KLFVMTDEE 1ysqA 146 :VSISLSTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29790 # 1k2xA.153.81 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :K 1k2xA 83 :D T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29792 # 1ftrA.153.73 read from T0287.t06.many.frag # found chain 1ftrA in training set T0287 153 :KLFVMTDEE 1ftrA 74 :TIMIGHNDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29793 # 1gsa.153.222 read from T0287.t06.many.frag # found chain 1gsa in template set Warning: unaligning (T0287)D159 (1gsa)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1gsa)T232 T0287 153 :KLFVMT 1gsa 223 :LARIPQ T0287 160 :E 1gsa 230 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=29795 # 1fjgP.153.17 read from T0287.t06.many.frag # found chain 1fjgP in template set T0287 153 :KLFVMTDEE 1fjgP 18 :RIVVTDARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29796 # 1gycA.153.121 read from T0287.t06.many.frag # found chain 1gycA in template set Warning: unaligning (T0287)K153 (1gycA)G122 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1gycA 123 :PFVVYDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29797 # 1f8eA.153.110 read from T0287.t06.many.frag # found chain 1f8eA in training set Warning: unaligning (T0287)M157 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)D159 (1f8eA)P197 because P (beta_P) conformation "forbidden" or filtered. T0287 153 :KLFV 1f8eA 191 :SICI T0287 158 :T 1f8eA 196 :G T0287 160 :EE 1f8eA 198 :NN Number of specific fragments extracted= 3 number of extra gaps= 2 total=29800 # 1yu0A.153.109 read from T0287.t06.many.frag # found chain 1yu0A in template set Warning: unaligning (T0287)F155 because of BadResidue code BAD_PEPTIDE in next template residue (1yu0A)V113 Warning: unaligning (T0287)V156 because of BadResidue code BAD_PEPTIDE at template residue (1yu0A)V113 Warning: unaligning (T0287)E160 (1yu0A)G117 because T (delta_L) conformation "forbidden" or filtered. T0287 153 :KL 1yu0A 110 :AI T0287 157 :MTD 1yu0A 114 :CDD T0287 161 :E 1yu0A 118 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=29803 # 2b4vA.153.79 read from T0287.t06.many.frag # found chain 2b4vA in template set Warning: unaligning (T0287)E160 (2b4vA)D106 because N (gamma') conformation "forbidden" or filtered. T0287 153 :KLFVMTD 2b4vA 99 :DLACMFD T0287 161 :E 2b4vA 107 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29805 # 1vetA.153.89 read from T0287.t06.many.frag # found chain 1vetA in template set T0287 153 :KLFVMTDEE 1vetA 90 :VSFIASSSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29806 # 1k8wA.153.305 read from T0287.t06.many.frag # found chain 1k8wA in template set Warning: unaligning (T0287)K153 (1k8wA)G293 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1k8wA)G301 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 1k8wA 294 :MGEIDDE Number of specific fragments extracted= 1 number of extra gaps= 2 total=29807 # 1yrkA.153.72 read from T0287.t06.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0287 153 :KLFVMT 1yrkA 70 :QIVLMR T0287 160 :EE 1yrkA 77 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29809 # 1no5A.154.48 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 T0287 154 :LFVM 1no5A 49 :LAII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29810 # 1zpvA.154.48 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1zpvA)K53 because P (beta_P) conformation "forbidden" or filtered. T0287 154 :LFV 1zpvA 46 :AVV T0287 158 :TDE 1zpvA 50 :SDE T0287 162 :V 1zpvA 54 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=29813 # 2a8eA.154.171 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)L154 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 2a8eA 173 :IQLQKEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29814 # 2biqA.154.160 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 154 :LFVMTDEEV 2biqA 254 :IITLEDSSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29815 # 1ry9A.154.112 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)V162 (1ry9A)V109 because G (3-10) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1ry9A 101 :RVVIKDDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=29816 # 2c60A.154.69 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 154 :LFV 2c60A 83 :LHY T0287 159 :DE 2c60A 88 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29818 # 1g60A.154.119 read from T0287.t06.many.frag # found chain 1g60A in training set Warning: unaligning (T0287)D159 (1g60A)S125 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1g60A 120 :LFFSK T0287 160 :EEV 1g60A 126 :KNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29820 # 1wd6A.154.69 read from T0287.t06.many.frag # found chain 1wd6A in template set T0287 154 :LFVMTDEEV 1wd6A 53 :IYLFTDEKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29821 # 2czrA.154.73 read from T0287.t06.many.frag # found chain 2czrA in template set T0287 154 :LFVMTDEEV 2czrA 66 :IVAIPDNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29822 # 1o4yA.154.120 read from T0287.t06.many.frag # found chain 1o4yA in training set Warning: unaligning (T0287)E161 (1o4yA)E144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1o4yA)T145 because G (3-10) conformation "forbidden" or filtered. T0287 154 :LFVMTDE 1o4yA 137 :FWTLTDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29823 # 1yrkA.154.73 read from T0287.t06.many.frag # found chain 1yrkA in template set T0287 154 :LFVMTDEEV 1yrkA 71 :IVLMRAAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29824 # 1ysqA.154.148 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFV 1ysqA 147 :SIS T0287 158 :TDEEV 1ysqA 151 :STSRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29826 # 1gycA.154.122 read from T0287.t06.many.frag # found chain 1gycA in template set T0287 154 :LFVMTDEEV 1gycA 123 :PFVVYDPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29827 # 1f60B.154.58 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 154 :LFVMTDEEV 1f60B 1171 :NCVVEDDKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29828 # 1h5rA.154.175 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 154 :LFVMTDEEV 1h5rA 176 :LYFYDNDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29829 # 1vr8A.154.62 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :LFVMT 1vr8A 75 :LYVYK T0287 160 :EEV 1vr8A 81 :EEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29831 # 12asA.154.119 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 154 :LFVMTD 12asA 120 :ERVMGD T0287 161 :EV 12asA 127 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=29833 # 1gw5S.154.66 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 154 :LFVMTDEEV 1gw5S 67 :FCICVDVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=29834 # 1dp4A.154.377 read from T0287.t06.many.frag # found chain 1dp4A in template set Warning: unaligning (T0287)V162 (1dp4A)G386 because T (delta_L) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1dp4A 378 :LWDMDPET Number of specific fragments extracted= 1 number of extra gaps= 1 total=29835 # 2ajfE.154.63 read from T0287.t06.many.frag # found chain 2ajfE in template set Warning: unaligning (T0287)F155 (2ajfE)F387 because Y (epsilon') conformation "forbidden" or filtered. T0287 154 :L 2ajfE 386 :S T0287 156 :VMTDEEV 2ajfE 388 :VVKGDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29837 # 1k2xA.154.82 read from T0287.t06.many.frag # found chain 1k2xA in training set Warning: unaligning (T0287)L154 (1k2xA)A84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1k2xA)L92 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDEE 1k2xA 85 :CVMDGNT Number of specific fragments extracted= 1 number of extra gaps= 2 total=29838 # 1cfzA.154.73 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 154 :LFVMTDE 1cfzA 74 :MMILRDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29839 # 1wnaA.154.90 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 154 :LFVMTDEEV 1wnaA 91 :EAVVSPGEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29840 # 1vl7A.154.80 read from T0287.t06.many.frag # found chain 1vl7A in training set Warning: unaligning (T0287)V162 (1vl7A)K77 because G (3-10) conformation "forbidden" or filtered. T0287 154 :LFVMTDEE 1vl7A 69 :VLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29841 # 1t9fA.154.158 read from T0287.t06.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)E160 (1t9fA)S184 because E (beta_S) conformation "forbidden" or filtered. T0287 154 :LFVMTD 1t9fA 178 :EVVGTD T0287 161 :EV 1t9fA 185 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29843 # 1ftrA.154.74 read from T0287.t06.many.frag # found chain 1ftrA in training set T0287 154 :LFVMTDEEV 1ftrA 75 :IMIGHNDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=29844 # 1vr7A.154.90 read from T0287.t06.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 154 :LFVMT 1vr7A 79 :DLFTC T0287 162 :V 1vr7A 87 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29846 # 2a2cA.154.428 read from T0287.t06.many.frag # found chain 2a2cA in template set T0287 154 :LFVMTDEEV 2a2cA 409 :VSMVPADKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29847 # 1yj7A.154.125 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 154 :LFVMTDEEV 1yj7A 145 :VLVISSPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29848 # 1jl0A.154.241 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 154 :LFVMTDEEV 1jl0A 242 :IAITPEPEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29849 # 2a8eA.155.172 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 155 :FVMTDEEVN 2a8eA 173 :IQLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29850 # 1zpvA.155.49 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)E161 (1zpvA)K53 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FVMTDE 1zpvA 47 :VVSSDE T0287 162 :VN 1zpvA 54 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29852 # 1no5A.155.49 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 T0287 155 :FVM 1no5A 50 :AII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29853 # 1cfzA.155.74 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 155 :FVMTDE 1cfzA 75 :MILRDE T0287 163 :N 1cfzA 83 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29855 # 2c60A.155.70 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 155 :FV 2c60A 84 :HY T0287 159 :DE 2c60A 88 :NE T0287 163 :N 2c60A 92 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=29858 # 1xkpC.155.94 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 155 :FVMTDEEVN 1xkpC 95 :ARLRLQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29859 # 1wnaA.155.91 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 155 :FVMTDEEVN 1wnaA 92 :AVVSPGEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29860 # 2biqA.155.161 read from T0287.t06.many.frag # found chain 2biqA in template set T0287 155 :FVMTDEEVN 2biqA 255 :ITLEDSSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29861 # 1yb3A.155.86 read from T0287.t06.many.frag # found chain 1yb3A in training set T0287 155 :FVMTDEEVN 1yb3A 79 :FAFPKEELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29862 # 1gw5S.155.67 read from T0287.t06.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)T158 (1gw5S)V71 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVM 1gw5S 68 :CIC T0287 159 :DEEVN 1gw5S 72 :DVNDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29864 # 1h5rA.155.176 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 155 :FVMTDEEVN 1h5rA 177 :YFYDNDVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29865 # 1ysqA.155.149 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FV 1ysqA 148 :IS T0287 158 :TDEEVN 1ysqA 151 :STSRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29867 # 2b5iC.155.59 read from T0287.t06.many.frag # found chain 2b5iC in template set T0287 155 :FVMTDEEVN 2b5iC 93 :CQLQKKEIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29868 # 1ry9A.155.113 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)N163 (1ry9A)H110 because G (3-10) conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1ry9A 102 :VVIKDDYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29869 # 1f60B.155.59 read from T0287.t06.many.frag # found chain 1f60B in training set Warning: unaligning (T0287)N163 (1f60B)S1180 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FVMTDEEV 1f60B 1172 :CVVEDDKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29870 # 1g60A.155.120 read from T0287.t06.many.frag # found chain 1g60A in training set T0287 155 :FVMTDEEVN 1g60A 121 :FFSKSKNHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29871 # 1vr8A.155.63 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1vr8A 76 :YVYK T0287 160 :EEVN 1vr8A 81 :EEAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29873 # 12asA.155.120 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTD 12asA 121 :RVMGD T0287 161 :EVN 12asA 127 :ERQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29875 # 1t6aA.155.71 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. T0287 155 :FVMTD 1t6aA 71 :SVRTA T0287 161 :EVN 1t6aA 77 :EET Number of specific fragments extracted= 2 number of extra gaps= 1 total=29877 # 1yj7A.155.126 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 155 :FVMTDEEVN 1yj7A 146 :LVISSPEVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29878 # 1wd6A.155.70 read from T0287.t06.many.frag # found chain 1wd6A in template set T0287 155 :FVMTDEEVN 1wd6A 54 :YLFTDEKSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29879 # 1gycA.155.123 read from T0287.t06.many.frag # found chain 1gycA in template set T0287 155 :FVMTDEEVN 1gycA 124 :FVVYDPKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29880 # 2a90A.155.27 read from T0287.t06.many.frag # found chain 2a90A in template set T0287 155 :FVMTDEEVN 2a90A 49 :WEFESRGKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29881 # 1uylA.155.186 read from T0287.t06.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)D159 (1uylA)K191 because P (beta_P) conformation "forbidden" or filtered. T0287 155 :FVMT 1uylA 187 :ILHL T0287 160 :EEVN 1uylA 192 :EDQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29883 # 2czrA.155.74 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 155 :FVMTDE 2czrA 67 :VAIPDN T0287 162 :VN 2czrA 74 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29885 # 1pv5A.155.222 read from T0287.t06.many.frag # found chain 1pv5A in training set T0287 155 :FVMTDEEVN 1pv5A 220 :QIDSDDDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=29886 # 1ln1A.155.41 read from T0287.t06.many.frag # found chain 1ln1A in template set T0287 155 :FVMTDEEVN 1ln1A 42 :YRLLDKKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29887 # 1yrkA.155.74 read from T0287.t06.many.frag # found chain 1yrkA in template set Warning: unaligning (T0287)D159 (1yrkA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMT 1yrkA 72 :VLMR T0287 160 :EEVN 1yrkA 77 :AEEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29889 # 2ajfE.155.64 read from T0287.t06.many.frag # found chain 2ajfE in template set T0287 155 :FVMTDEEVN 2ajfE 387 :FVVKGDDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29890 # 1t9fA.155.159 read from T0287.t06.many.frag # found chain 1t9fA in template set Warning: unaligning (T0287)E161 (1t9fA)I185 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)V162 (1t9fA)T186 because Y (epsilon') conformation "forbidden" or filtered. T0287 155 :FVMTDE 1t9fA 179 :VVGTDS T0287 163 :N 1t9fA 187 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29892 # 1cfzA.156.75 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 156 :VMTDE 1cfzA 76 :ILRDE T0287 163 :NF 1cfzA 83 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29894 # 1zpvA.156.50 read from T0287.t06.many.frag # found chain 1zpvA in template set T0287 156 :VMTDEEVNF 1zpvA 48 :VSSDEKQDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29895 # 1no5A.156.50 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 156 :VM 1no5A 51 :II Number of specific fragments extracted= 1 number of extra gaps= 1 total=29896 # 2a8eA.156.173 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 156 :VMTDEEVNF 2a8eA 174 :QLQKEEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29897 # 2c60A.156.71 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 156 :V 2c60A 85 :Y T0287 159 :DE 2c60A 88 :NE T0287 163 :NF 2c60A 92 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29900 # 1wnaA.156.92 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 156 :VMTDEEVNF 1wnaA 93 :VVSPGEMTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29901 # 1h5rA.156.177 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 156 :VMTDEEVNF 1h5rA 178 :FYDNDVVQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29902 # 12asA.156.121 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTD 12asA 122 :VMGD T0287 161 :EV 12asA 127 :ER T0287 164 :F 12asA 130 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=29905 # 1xkpC.156.95 read from T0287.t06.many.frag # found chain 1xkpC in training set Warning: unaligning (T0287)N163 (1xkpC)D103 because E (beta_S) conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1xkpC 96 :RLRLQEL T0287 164 :F 1xkpC 104 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29907 # 2b5iC.156.60 read from T0287.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)M157 (2b5iC)L95 because P (beta_P) conformation "forbidden" or filtered. T0287 156 :V 2b5iC 94 :Q T0287 158 :TDEEVNF 2b5iC 96 :QKKEIHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29909 # 1yb3A.156.87 read from T0287.t06.many.frag # found chain 1yb3A in training set Warning: unaligning (T0287)N163 (1yb3A)S87 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMTDEEV 1yb3A 80 :AFPKEEL T0287 164 :F 1yb3A 88 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=29911 # 1t6aA.156.72 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)D159 (1t6aA)A75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 T0287 156 :VMT 1t6aA 72 :VRT T0287 160 :EEVN 1t6aA 76 :GEET Number of specific fragments extracted= 2 number of extra gaps= 2 total=29913 # 1f60B.156.60 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 156 :VMTDEEVNF 1f60B 1173 :VVEDDKVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29914 # 1gw5S.156.68 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 156 :VMTDEEVNF 1gw5S 69 :ICVDVNDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29915 # 1vr8A.156.64 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :VMT 1vr8A 77 :VYK T0287 160 :EEVNF 1vr8A 81 :EEAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29917 # 1zn6A.156.183 read from T0287.t06.many.frag # found chain 1zn6A in template set T0287 156 :VMTDEEVNF 1zn6A 184 :ILPDGAYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29918 # 1yj7A.156.127 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 156 :VMTDEEVNF 1yj7A 147 :VISSPEVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29919 # 2a90A.156.28 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 156 :VMTDE 2a90A 50 :EFESR T0287 162 :VNF 2a90A 56 :KWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29921 # 1ysqA.156.150 read from T0287.t06.many.frag # found chain 1ysqA in training set Warning: unaligning (T0287)M157 (1ysqA)L150 because Y (epsilon') conformation "forbidden" or filtered. T0287 156 :V 1ysqA 149 :S T0287 158 :TDEEVNF 1ysqA 151 :STSRLKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29923 # 1zh1A.156.96 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)V156 (1zh1A)G132 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1zh1A)D136 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :MTD 1zh1A 133 :MTT T0287 161 :EVNF 1zh1A 137 :NVKC Number of specific fragments extracted= 2 number of extra gaps= 2 total=29925 # 1uwcA.156.225 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 156 :VMTDEEVN 1uwcA 226 :VCTGDEVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=29926 # 2czrA.156.75 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 156 :VMTDE 2czrA 68 :AIPDN T0287 162 :VNF 2czrA 74 :VFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29928 # 1ry9A.156.114 read from T0287.t06.many.frag # found chain 1ry9A in template set Warning: unaligning (T0287)V162 (1ry9A)V109 because G (3-10) conformation "forbidden" or filtered. T0287 156 :VMTDEE 1ry9A 103 :VIKDDY T0287 163 :NF 1ry9A 110 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29930 # 1yymG.156.84 read from T0287.t06.many.frag # found chain 1yymG in template set Warning: unaligning (T0287)M157 (1yymG)C228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (1yymG)K232 because L (left) conformation "forbidden" or filtered. T0287 156 :V 1yymG 227 :K T0287 158 :TDE 1yymG 229 :NDK T0287 162 :VNF 1yymG 233 :FNG Number of specific fragments extracted= 3 number of extra gaps= 2 total=29933 # 1pv5A.156.223 read from T0287.t06.many.frag # found chain 1pv5A in training set Warning: unaligning (T0287)M157 (1pv5A)D222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1pv5A)D228 because L (left) conformation "forbidden" or filtered. T0287 156 :V 1pv5A 221 :I T0287 158 :TDEEV 1pv5A 223 :SDDDI T0287 164 :F 1pv5A 229 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=29936 # 1dmgA.156.16 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 156 :VMTDEEVNF 1dmgA 18 :EISDFVFNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29937 # 1xg8A.156.12 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 156 :VMTDEEVNF 1xg8A 4 :YGADVICAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29938 # 1uylA.156.187 read from T0287.t06.many.frag # found chain 1uylA in training set T0287 156 :VMTDEEVNF 1uylA 188 :LHLKEDQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29939 # 1yreA.156.177 read from T0287.t06.many.frag # found chain 1yreA in template set T0287 156 :VMTDEEVNF 1yreA 176 :SITDHEWPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29940 # 1jiwI.156.28 read from T0287.t06.many.frag # found chain 1jiwI in training set T0287 156 :VMTDEEVNF 1jiwI 29 :ELRDSEVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29941 # 1cfzA.157.76 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 157 :MTDE 1cfzA 77 :LRDE T0287 163 :NFY 1cfzA 83 :PAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29943 # 1zpvA.157.51 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)M157 (1zpvA)S49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TD 1zpvA 50 :SD T0287 161 :EVNFY 1zpvA 53 :KQDFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=29945 # 2c60A.157.72 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)M157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c60A)N87 Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFY 2c60A 92 :ILL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29947 # 1no5A.157.51 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 T0287 157 :M 1no5A 52 :I T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29949 # 1wnaA.157.93 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 157 :MTDEEVNFY 1wnaA 94 :VSPGEMTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29950 # 1h5rA.157.178 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 157 :MTDEEVNFY 1h5rA 179 :YDNDVVQMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29951 # 12asA.157.122 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0287 157 :MTD 12asA 123 :MGD T0287 161 :EVNFY 12asA 127 :ERQFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29953 # 2b5iC.157.61 read from T0287.t06.many.frag # found chain 2b5iC in template set T0287 157 :MTDEEVNFY 2b5iC 95 :LQKKEIHLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29954 # 1xkpC.157.96 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 157 :MTDEEVNFY 1xkpC 97 :LRLQELDTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29955 # 1f60B.157.61 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 157 :MTDEEVNFY 1f60B 1174 :VEDDKVSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29956 # 2a8eA.157.174 read from T0287.t06.many.frag # found chain 2a8eA in template set Warning: unaligning (T0287)F164 (2a8eA)N182 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MTDEEVN 2a8eA 175 :LQKEEVL T0287 165 :Y 2a8eA 183 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=29958 # 1t6aA.157.73 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1t6aA)T79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 157 :MTD 1t6aA 73 :RTA T0287 161 :EV 1t6aA 77 :EE Number of specific fragments extracted= 2 number of extra gaps= 2 total=29960 # 1gw5S.157.69 read from T0287.t06.many.frag # found chain 1gw5S in template set Warning: unaligning (T0287)T158 (1gw5S)V71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1gw5S)N76 because P (beta_P) conformation "forbidden" or filtered. T0287 157 :M 1gw5S 70 :C T0287 159 :DEEV 1gw5S 72 :DVND T0287 164 :FY 1gw5S 77 :NL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29963 # 1yj7A.157.128 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 157 :MTDEEVNFY 1yj7A 148 :ISSPEVNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29964 # 1yb3A.157.88 read from T0287.t06.many.frag # found chain 1yb3A in training set T0287 157 :MTDEEVNFY 1yb3A 81 :FPKEELSKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29965 # 1zh1A.157.97 read from T0287.t06.many.frag # found chain 1zh1A in template set T0287 157 :MTDEEVNFY 1zh1A 133 :MTTDNVKCP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29966 # 2a90A.157.29 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. T0287 157 :MTD 2a90A 51 :FES T0287 161 :EVNFY 2a90A 55 :GKWLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29968 # 1uwcA.157.226 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MT 1uwcA 227 :CT T0287 160 :EEV 1uwcA 230 :DEV T0287 164 :FY 1uwcA 234 :CC Number of specific fragments extracted= 3 number of extra gaps= 2 total=29971 # 1h70A.157.194 read from T0287.t06.many.frag # found chain 1h70A in training set T0287 157 :MTDEEVNFY 1h70A 194 :EIPEEESYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29972 # 1xg8A.157.13 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)M157 (1xg8A)G5 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1xg8A 6 :ADVICASC Number of specific fragments extracted= 1 number of extra gaps= 1 total=29973 # 1zn6A.157.184 read from T0287.t06.many.frag # found chain 1zn6A in template set T0287 157 :MTDEEVNFY 1zn6A 185 :LPDGAYGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29974 # 1pbjA.157.101 read from T0287.t06.many.frag # found chain 1pbjA in training set Warning: unaligning (T0287)E160 (1pbjA)D105 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1pbjA)I108 because G (3-10) conformation "forbidden" or filtered. T0287 157 :MTD 1pbjA 102 :EED T0287 161 :EV 1pbjA 106 :EI T0287 164 :FY 1pbjA 109 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29977 # 2czrA.157.76 read from T0287.t06.many.frag # found chain 2czrA in template set Warning: unaligning (T0287)E161 (2czrA)G73 because L (left) conformation "forbidden" or filtered. T0287 157 :MTDE 2czrA 69 :IPDN T0287 162 :VNFY 2czrA 74 :VFYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29979 # 1vr8A.157.65 read from T0287.t06.many.frag # found chain 1vr8A in training set Warning: unaligning (T0287)D159 (1vr8A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MT 1vr8A 78 :YK T0287 160 :EEVNFY 1vr8A 81 :EEAKKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29981 # 1n9pA.157.151 read from T0287.t06.many.frag # found chain 1n9pA in training set Warning: unaligning (T0287)Y165 (1n9pA)G324 because T (delta_L) conformation "forbidden" or filtered. T0287 157 :MTDEEVNF 1n9pA 316 :YTEDEVLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=29982 # 1o97D.157.287 read from T0287.t06.many.frag # found chain 1o97D in training set T0287 157 :MTDEEVNFY 1o97D 288 :NTDPGASIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29983 # 1t3gA.157.19 read from T0287.t06.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFY 1t3gA 424 :GEEERFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29984 # 1m9zA.157.41 read from T0287.t06.many.frag # found chain 1m9zA in training set Warning: unaligning (T0287)E161 (1m9zA)N71 because Y (epsilon') conformation "forbidden" or filtered. T0287 157 :MTDE 1m9zA 67 :KNDE T0287 162 :VNFY 1m9zA 72 :ITLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29986 # 1vr7A.157.93 read from T0287.t06.many.frag # found chain 1vr7A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE in next template residue (1vr7A)E85 Warning: unaligning (T0287)E160 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)E85 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1vr7A)D86 T0287 157 :MT 1vr7A 82 :TC T0287 162 :VNFY 1vr7A 87 :VDPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29988 # 1kzfA.157.184 read from T0287.t06.many.frag # found chain 1kzfA in training set T0287 157 :MTDEEVNFY 1kzfA 165 :LTEKERIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29989 # 1cfzA.158.77 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 158 :TDE 1cfzA 78 :RDE T0287 163 :NFYA 1cfzA 83 :PALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29991 # 2c60A.158.73 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)T158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c60A)N87 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYA 2c60A 92 :ILLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29993 # 1zpvA.158.52 read from T0287.t06.many.frag # found chain 1zpvA in template set Warning: unaligning (T0287)E160 (1zpvA)E52 because E (beta_S) conformation "forbidden" or filtered. T0287 158 :TD 1zpvA 50 :SD T0287 161 :EVNFYA 1zpvA 53 :KQDFTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29995 # 1wnaA.158.94 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 158 :TDEEVNFYA 1wnaA 95 :SPGEMTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29996 # 1h5rA.158.179 read from T0287.t06.many.frag # found chain 1h5rA in template set T0287 158 :TDEEVNFYA 1h5rA 180 :DNDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29997 # 1gw5S.158.70 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 158 :TDEEVNFYA 1gw5S 71 :VDVNDNNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29998 # 12asA.158.123 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 158 :TD 12asA 124 :GD T0287 161 :EV 12asA 127 :ER T0287 164 :FYA 12asA 130 :FST Number of specific fragments extracted= 3 number of extra gaps= 2 total=30001 # 1no5A.158.52 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)T158 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)E54 Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=30002 # 1uwcA.158.227 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1uwcA)C234 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :T 1uwcA 228 :T T0287 160 :EEV 1uwcA 230 :DEV T0287 165 :YA 1uwcA 235 :CE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30005 # 1t6aA.158.74 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)E160 (1t6aA)G76 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 158 :TD 1t6aA 74 :TA T0287 161 :EVN 1t6aA 77 :EET T0287 166 :A 1t6aA 82 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=30008 # 1h70A.158.195 read from T0287.t06.many.frag # found chain 1h70A in training set T0287 158 :TDEEVNFYA 1h70A 195 :IPEEESYAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30009 # 2a90A.158.30 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)E160 (2a90A)R54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 (2a90A)G55 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TD 2a90A 52 :ES T0287 162 :VNFYA 2a90A 56 :KWLPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30011 # 1xkpC.158.97 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 158 :TDEEVNFYA 1xkpC 98 :RLQELDTHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30012 # 1yj7A.158.129 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 158 :TDEEVNFYA 1yj7A 149 :SSPEVNLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30013 # 1f60B.158.62 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 158 :TDEEVNFYA 1f60B 1175 :EDDKVSLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30014 # 2b5iC.158.62 read from T0287.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)Y165 (2b5iC)Y103 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDEEVNF 2b5iC 96 :QKKEIHL T0287 166 :A 2b5iC 104 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=30016 # 1zh1A.158.98 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TDE 1zh1A 134 :TTD T0287 162 :VNFYA 1zh1A 138 :VKCPC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30018 # 1xg8A.158.14 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 158 :TDEEVNFYA 1xg8A 6 :ADVICASCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30019 # 1pbjA.158.102 read from T0287.t06.many.frag # found chain 1pbjA in training set Warning: unaligning (T0287)E160 (1pbjA)D105 because T (delta_L) conformation "forbidden" or filtered. T0287 158 :TD 1pbjA 103 :ED T0287 161 :EVNFYA 1pbjA 106 :EIIGVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30021 # 2btiA.158.37 read from T0287.t06.many.frag # found chain 2btiA in template set Warning: unaligning (T0287)A166 (2btiA)R44 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 2btiA 36 :APKEVSVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=30022 # 1t3gA.158.20 read from T0287.t06.many.frag # found chain 1t3gA in template set Warning: unaligning (T0287)T158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1t3gA)T423 T0287 159 :DEEVNFYA 1t3gA 424 :GEEERFAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30023 # 1l3lA.158.138 read from T0287.t06.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)N163 (1l3lA)D144 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :TDEEV 1l3lA 139 :LDREI T0287 164 :FYA 1l3lA 145 :AVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30025 # 1zn6A.158.185 read from T0287.t06.many.frag # found chain 1zn6A in template set T0287 158 :TDEEVNFYA 1zn6A 186 :PDGAYGDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30026 # 1o97D.158.288 read from T0287.t06.many.frag # found chain 1o97D in training set T0287 158 :TDEEVNFYA 1o97D 289 :TDPGASIFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30027 # 1uylA.158.189 read from T0287.t06.many.frag # found chain 1uylA in training set Warning: unaligning (T0287)D159 (1uylA)K191 because P (beta_P) conformation "forbidden" or filtered. T0287 158 :T 1uylA 190 :L T0287 160 :EEVNFYA 1uylA 192 :EDQTEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30029 # 1mkaA.158.59 read from T0287.t06.many.frag # found chain 1mkaA in template set T0287 158 :TDEEVNFYA 1mkaA 60 :INPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30030 # 2a8eA.158.175 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 158 :TDEEVNFYA 2a8eA 176 :QKEEVLNMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30031 # 1ngmB.158.31 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 158 :TDEEVNFY 1ngmB 466 :DDEELNAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=30032 # 1lbu.158.162 read from T0287.t06.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. T0287 158 :TD 1lbu 163 :GA T0287 161 :EVNFYA 1lbu 166 :SQGFCA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30034 # 1yzxA.158.189 read from T0287.t06.many.frag # found chain 1yzxA in template set T0287 158 :TDEEVNFYA 1yzxA 190 :VDGQTHMLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30035 # 1gw5S.159.71 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 159 :DEEVNFYAN 1gw5S 72 :DVNDNNLAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30036 # 1cfzA.159.78 read from T0287.t06.many.frag # found chain 1cfzA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1cfzA)V82 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1cfzA)V82 T0287 159 :DE 1cfzA 79 :DE T0287 163 :NFYAN 1cfzA 83 :PALFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30038 # 1wnaA.159.95 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 159 :DEEVNFYAN 1wnaA 96 :PGEMTALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30039 # 1l3lA.159.139 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 159 :DEEVNFYAN 1l3lA 140 :DREIDAVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30040 # 1h5rA.159.180 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)N167 (1h5rA)N189 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 1h5rA 181 :NDVVQMAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30041 # 2c60A.159.74 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 159 :DE 2c60A 88 :NE T0287 163 :NFYAN 2c60A 92 :ILLKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30043 # 1xkpC.159.98 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 159 :DEEVNFYAN 1xkpC 99 :LQELDTHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30044 # 1xg8A.159.15 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E161 (1xg8A)I9 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DE 1xg8A 7 :DV T0287 162 :VNFYAN 1xg8A 10 :CASCVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30046 # 12asA.159.124 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)E160 (12asA)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 159 :D 12asA 125 :D T0287 161 :EV 12asA 127 :ER T0287 164 :FYAN 12asA 130 :FSTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=30049 # 1h70A.159.196 read from T0287.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)V162 (1h70A)E199 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Y165 (1h70A)A202 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEE 1h70A 196 :PEE T0287 163 :NF 1h70A 200 :SY T0287 166 :AN 1h70A 203 :AN Number of specific fragments extracted= 3 number of extra gaps= 2 total=30052 # 1zh1A.159.99 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 159 :DE 1zh1A 135 :TD T0287 162 :VNFYAN 1zh1A 138 :VKCPCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30054 # 1xdnA.159.68 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1xdnA)D116 Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 166 :AN 1xdnA 123 :GY Number of specific fragments extracted= 2 number of extra gaps= 2 total=30056 # 1zpvA.159.53 read from T0287.t06.many.frag # found chain 1zpvA in template set T0287 159 :DEEVNFYAN 1zpvA 51 :DEKQDFTYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30057 # 1f60B.159.63 read from T0287.t06.many.frag # found chain 1f60B in training set Warning: unaligning (T0287)N163 (1f60B)S1180 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DEEV 1f60B 1176 :DDKV T0287 164 :FYAN 1f60B 1181 :LDDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30059 # 2a90A.159.31 read from T0287.t06.many.frag # found chain 2a90A in template set Warning: unaligning (T0287)N167 (2a90A)S61 because P (beta_P) conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 2a90A 53 :SRGKWLPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30060 # 1yj7A.159.130 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 159 :DEEVNFYAN 1yj7A 150 :SPEVNLAPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30061 # 1mkaA.159.60 read from T0287.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)N167 (1mkaA)C69 because G (3-10) conformation "forbidden" or filtered. T0287 159 :DEEVNFYA 1mkaA 61 :NPDLWFFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30062 # 1ngmB.159.32 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)D159 (1ngmB)D467 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1ngmB)N471 because G (3-10) conformation "forbidden" or filtered. T0287 161 :EV 1ngmB 469 :EL T0287 164 :FYAN 1ngmB 472 :AHLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30064 # 1lbu.159.163 read from T0287.t06.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :D 1lbu 164 :A T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYAN 1lbu 169 :FCAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=30067 # 1t0tV.159.150 read from T0287.t06.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)D159 (1t0tV)Q151 because E (beta_S) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1t0tV 152 :GNDNWYML Number of specific fragments extracted= 1 number of extra gaps= 1 total=30068 # 1uylA.159.190 read from T0287.t06.many.frag # found chain 1uylA in training set T0287 159 :DEEVNFYAN 1uylA 191 :KEDQTEYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30069 # 1uwcA.159.228 read from T0287.t06.many.frag # found chain 1uwcA in training set Warning: unaligning (T0287)D159 (1uwcA)G229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1uwcA)Q233 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEV 1uwcA 230 :DEV T0287 164 :FYAN 1uwcA 234 :CCEA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30071 # 1o97D.159.289 read from T0287.t06.many.frag # found chain 1o97D in training set T0287 159 :DEEVNFYAN 1o97D 290 :DPGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30072 # 2b5iC.159.63 read from T0287.t06.many.frag # found chain 2b5iC in template set T0287 159 :DEEVNFYAN 2b5iC 97 :KKEIHLYQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30073 # 1qo7A.159.366 read from T0287.t06.many.frag # found chain 1qo7A in training set Warning: unaligning (T0287)V162 (1qo7A)G372 because S (epsilon) conformation "forbidden" or filtered. T0287 159 :DEE 1qo7A 369 :HAE T0287 163 :NFYAN 1qo7A 373 :GHFAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30075 # 1t6aA.159.75 read from T0287.t06.many.frag # found chain 1t6aA in template set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE in next template residue (1t6aA)I81 Warning: unaligning (T0287)Y165 because of BadResidue code BAD_PEPTIDE at template residue (1t6aA)I81 T0287 159 :DEEVN 1t6aA 75 :AGEET T0287 166 :AN 1t6aA 82 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30077 # 1rcwA.159.102 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 159 :DEEVNFYAN 1rcwA 103 :PEELEAHEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30078 # 1no5A.159.53 read from T0287.t06.many.frag # found chain 1no5A in training set Warning: unaligning (T0287)D159 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)E54 Warning: unaligning (T0287)E160 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1no5A)E55 Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)L57 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)L57 Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)F59 Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)F59 Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1no5A)R62 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1no5A)R62 T0287 165 :Y 1no5A 60 :L Number of specific fragments extracted= 1 number of extra gaps= 2 total=30079 # 2a8eA.159.176 read from T0287.t06.many.frag # found chain 2a8eA in template set T0287 159 :DEEVNFYAN 2a8eA 177 :KEEVLNMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30080 # 1i60A.159.248 read from T0287.t06.many.frag # found chain 1i60A in training set Warning: unaligning (T0287)D159 (1i60A)R249 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1i60A 250 :PEYYKLTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30081 # 1gw5S.160.72 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 160 :EEVNFYANL 1gw5S 73 :VNDNNLAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30082 # 1h5rA.160.181 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 T0287 160 :EEVNFYAN 1h5rA 182 :DVVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=30083 # 1xg8A.160.16 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)E161 (1xg8A)I9 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :E 1xg8A 8 :V T0287 162 :VNFYANL 1xg8A 10 :CASCVNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30085 # 1l3lA.160.140 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 160 :EEVNFYANL 1l3lA 141 :REIDAVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30086 # 2c60A.160.75 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 160 :E 2c60A 89 :E T0287 163 :NFYANL 2c60A 92 :ILLKNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30088 # 1xkpC.160.99 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 160 :EEVNFYANL 1xkpC 100 :QELDTHGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30089 # 1xdnA.160.69 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 160 :EEVNF 1xdnA 117 :PNENF T0287 166 :ANL 1xdnA 123 :GYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=30091 # 1t0tV.160.151 read from T0287.t06.many.frag # found chain 1t0tV in training set T0287 160 :EEVNFYANL 1t0tV 152 :GNDNWYMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30092 # 1zh1A.160.100 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)E161 (1zh1A)N137 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :E 1zh1A 136 :D T0287 162 :VNFYANL 1zh1A 138 :VKCPCQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30094 # 1f60B.160.64 read from T0287.t06.many.frag # found chain 1f60B in training set T0287 160 :EEVNFYANL 1f60B 1177 :DKVSLDDLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30095 # 1lbu.160.164 read from T0287.t06.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)E160 (1lbu)G165 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYANL 1lbu 169 :FCALA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30097 # 1rcwA.160.103 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 160 :EEVNFYANL 1rcwA 104 :EELEAHEPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30098 # 1mkaA.160.61 read from T0287.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 T0287 160 :EEVNFYAN 1mkaA 62 :PDLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=30099 # 1qnrA.160.129 read from T0287.t06.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)A166 (1qnrA)T136 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EEVNFY 1qnrA 130 :NATTWY T0287 167 :NL 1qnrA 137 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30101 # 12asA.160.125 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEV 12asA 126 :GER T0287 164 :FYANL 12asA 130 :FSTLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30103 # 1h70A.160.197 read from T0287.t06.many.frag # found chain 1h70A in training set Warning: unaligning (T0287)V162 (1h70A)E199 because G (3-10) conformation "forbidden" or filtered. T0287 160 :EE 1h70A 197 :EE T0287 163 :NFYANL 1h70A 200 :SYAANC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30105 # 1ngmB.160.33 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)E160 (1ngmB)E468 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 161 :EVNFY 1ngmB 469 :ELNAH T0287 167 :NL 1ngmB 475 :LN Number of specific fragments extracted= 2 number of extra gaps= 2 total=30107 # 1zgkA.160.240 read from T0287.t06.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E160 (1zgkA)E542 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 T0287 163 :NFYANL 1zgkA 545 :TFVAPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30108 # 1yj7A.160.131 read from T0287.t06.many.frag # found chain 1yj7A in template set T0287 160 :EEVNFYANL 1yj7A 151 :PEVNLAPSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30109 # 2ex0A.160.376 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 160 :EEVNFYANL 2ex0A 401 :SQVIFWDSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30110 # 1fo8A.160.72 read from T0287.t06.many.frag # found chain 1fo8A in training set T0287 160 :EEVNFYANL 1fo8A 177 :DHRKFQGYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30111 # 2b5iC.160.64 read from T0287.t06.many.frag # found chain 2b5iC in template set Warning: unaligning (T0287)N167 (2b5iC)T105 because P (beta_P) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 2b5iC 98 :KEIHLYQ T0287 168 :L 2b5iC 106 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=30113 # 1wnaA.160.96 read from T0287.t06.many.frag # found chain 1wnaA in training set T0287 160 :EEVNFYANL 1wnaA 97 :GEMTALLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30114 # 1o97D.160.290 read from T0287.t06.many.frag # found chain 1o97D in training set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1o97D)K300 T0287 160 :EEVNFYAN 1o97D 291 :PGASIFTI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30115 # 1dmgA.160.20 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 160 :EEVNFYANL 1dmgA 22 :FVFNIDPNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30116 # 1zavA.160.126 read from T0287.t06.many.frag # found chain 1zavA in template set T0287 160 :EEVNFYANL 1zavA 126 :EEVENIAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30117 # 1i60A.160.249 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 160 :EEVNFYANL 1i60A 250 :PEYYKLTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30118 # 1dqzA.160.42 read from T0287.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 160 :EEVNFYAN 1dqzA 45 :DYNGWDIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=30119 # 1vk4A.160.186 read from T0287.t06.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 160 :EEVNFYA 1vk4A 175 :REAETLT T0287 168 :L 1vk4A 183 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=30121 # 1h8eG.160.187 read from T0287.t06.many.frag # found chain 1h8eG in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h8eG)D197 T0287 160 :EEVNFYAN 1h8eG 188 :ESMSIYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30122 # 1gw5S.161.73 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 161 :EVNFYANLK 1gw5S 74 :NDNNLAYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30123 # 1xg8A.161.17 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 161 :EVNFYANLK 1xg8A 9 :ICASCVNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30124 # 1h5rA.161.182 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 161 :EVNFYAN 1h5rA 183 :VVQMAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=30125 # 2c60A.161.76 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2c60A)S91 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 163 :NFYANLK 2c60A 92 :ILLKNQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30126 # 1l3lA.161.141 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 161 :EVNFYANLK 1l3lA 142 :EIDAVAAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30127 # 1t0tV.161.152 read from T0287.t06.many.frag # found chain 1t0tV in training set T0287 161 :EVNFYANLK 1t0tV 153 :NDNWYMLSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30128 # 1qnrA.161.130 read from T0287.t06.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)N167 (1qnrA)N137 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYA 1qnrA 131 :ATTWYT T0287 168 :LK 1qnrA 138 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30130 # 1xdnA.161.70 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 161 :EVNF 1xdnA 118 :NENF T0287 167 :NLK 1xdnA 124 :YHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30132 # 1dmgA.161.21 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 161 :EVNFYANLK 1dmgA 23 :VFNIDPNYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30133 # 1rcwA.161.104 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 161 :EVNFYANLK 1rcwA 105 :ELEAHEPSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30134 # 2ex0A.161.377 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 161 :EVNFYANLK 2ex0A 402 :QVIFWDSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30135 # 1fo8A.161.73 read from T0287.t06.many.frag # found chain 1fo8A in training set T0287 161 :EVNFYANLK 1fo8A 178 :HRKFQGYYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30136 # 1lbu.161.165 read from T0287.t06.many.frag # found chain 1lbu in training set Warning: unaligning (T0287)N163 (1lbu)G168 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :EV 1lbu 166 :SQ T0287 164 :FYANLK 1lbu 169 :FCALAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30138 # 1josA.161.60 read from T0287.t06.many.frag # found chain 1josA in training set T0287 161 :EVNFYANLK 1josA 61 :EMAIEQGMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30139 # 1ngmB.161.34 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1ngmB)L475 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFY 1ngmB 469 :ELNAH T0287 168 :LK 1ngmB 476 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30141 # 1mkaA.161.62 read from T0287.t06.many.frag # found chain 1mkaA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1mkaA)F71 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1mkaA)F71 T0287 161 :EVNFYAN 1mkaA 63 :DLWFFGC Number of specific fragments extracted= 1 number of extra gaps= 1 total=30142 # 1vk4A.161.187 read from T0287.t06.many.frag # found chain 1vk4A in template set T0287 161 :EVNFYANLK 1vk4A 176 :EAETLTGTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30143 # 1hp1A.161.297 read from T0287.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE at template residue (1hp1A)R332 Warning: unaligning (T0287)A166 (1hp1A)P337 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1hp1A)E338 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFY 1hp1A 333 :VLYT T0287 168 :LK 1hp1A 339 :IA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30145 # 1xkpC.161.100 read from T0287.t06.many.frag # found chain 1xkpC in training set T0287 161 :EVNFYANLK 1xkpC 101 :ELDTHGLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30146 # 1e0tA.161.314 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LK 1e0tA 322 :LE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30147 # 1dqzA.161.43 read from T0287.t06.many.frag # found chain 1dqzA in training set T0287 161 :EVNFYANLK 1dqzA 46 :YNGWDINTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30148 # 1rz2A.161.143 read from T0287.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)V162 (1rz2A)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 161 :E 1rz2A 144 :D T0287 163 :N 1rz2A 146 :S T0287 165 :YANLK 1rz2A 148 :FGSLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=30151 # 1zdyA.161.127 read from T0287.t06.many.frag # found chain 1zdyA in template set T0287 161 :EVNFYANLK 1zdyA 128 :NMPGVAELS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30152 # 1t0hB.161.87 read from T0287.t06.many.frag # found chain 1t0hB in template set Warning: unaligning (T0287)A166 (1t0hB)S294 because N (gamma') conformation "forbidden" or filtered. T0287 161 :EVNFY 1t0hB 289 :RSNTR T0287 167 :NLK 1t0hB 295 :SLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30154 # 1thtA.161.239 read from T0287.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)E161 (1thtA)S240 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1thtA)N246 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYA 1thtA 241 :HDLGE T0287 168 :LK 1thtA 247 :LV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30156 # 1zh1A.161.101 read from T0287.t06.many.frag # found chain 1zh1A in template set Warning: unaligning (T0287)K169 (1zh1A)P145 because P (beta_P) conformation "forbidden" or filtered. T0287 161 :EVNFYANL 1zh1A 137 :NVKCPCQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30157 # 1i60A.161.250 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 161 :EVNFYANLK 1i60A 251 :EYYKLTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30158 # 1zgkA.161.241 read from T0287.t06.many.frag # found chain 1zgkA in template set Warning: unaligning (T0287)E161 because of BadResidue code BAD_PEPTIDE in next template residue (1zgkA)W544 Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (1zgkA)W544 T0287 163 :NFYANLK 1zgkA 545 :TFVAPMK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30159 # 1zavA.161.127 read from T0287.t06.many.frag # found chain 1zavA in template set T0287 161 :EVNFYANLK 1zavA 127 :EVENIAKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30160 # 12asA.161.126 read from T0287.t06.many.frag # found chain 12asA in template set Warning: unaligning (T0287)N163 (12asA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0287 161 :EV 12asA 127 :ER T0287 164 :FYANLK 12asA 130 :FSTLKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30162 # 1xg8A.162.18 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 1xg8A 10 :CASCVNA T0287 170 :T 1xg8A 18 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=30164 # 1gw5S.162.74 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 162 :VNFYANLKT 1gw5S 75 :DNNLAYLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30165 # 2c60A.162.77 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)V162 because of BadResidue code BAD_PEPTIDE at template residue (2c60A)S91 T0287 163 :NFYANLKT 2c60A 92 :ILLKNQDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30166 # 1h5rA.162.183 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 162 :VNFYAN 1h5rA 184 :VQMAKN T0287 170 :T 1h5rA 192 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=30168 # 2bgcA.162.205 read from T0287.t06.many.frag # found chain 2bgcA in template set T0287 162 :VNFYANLKT 2bgcA 205 :CFYVQNLDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30169 # 1dmgA.162.22 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 162 :VNFYANLKT 1dmgA 24 :FNIDPNYDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30170 # 1e0tA.162.315 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKT 1e0tA 322 :LEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30171 # 1josA.162.61 read from T0287.t06.many.frag # found chain 1josA in training set T0287 162 :VNFYANLKT 1josA 62 :MAIEQGMKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30172 # 1l3lA.162.142 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 162 :VNFYANLKT 1l3lA 143 :IDAVAAAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30173 # 1vk4A.162.188 read from T0287.t06.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 162 :VNFYA 1vk4A 177 :AETLT T0287 168 :LKT 1vk4A 183 :TND Number of specific fragments extracted= 2 number of extra gaps= 1 total=30175 # 1qnrA.162.131 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 162 :VNFYANLKT 1qnrA 132 :TTWYTNTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30176 # 1rcwA.162.105 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 162 :VNFYANLKT 1rcwA 106 :LEAHEPSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30177 # 1thtA.162.240 read from T0287.t06.many.frag # found chain 1thtA in template set T0287 162 :VNFYANLKT 1thtA 241 :HDLGENLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30178 # 2ex0A.162.378 read from T0287.t06.many.frag # found chain 2ex0A in template set Warning: unaligning (T0287)K169 (2ex0A)K410 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :VNFYANL 2ex0A 403 :VIFWDSL T0287 170 :T 2ex0A 411 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=30180 # 1t0tV.162.153 read from T0287.t06.many.frag # found chain 1t0tV in training set Warning: unaligning (T0287)N163 (1t0tV)N155 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1t0tV)M158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1t0tV)L159 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1t0tV 154 :D T0287 164 :FY 1t0tV 156 :WY T0287 168 :LKT 1t0tV 160 :SME Number of specific fragments extracted= 3 number of extra gaps= 2 total=30183 # 1t0hB.162.88 read from T0287.t06.many.frag # found chain 1t0hB in template set T0287 162 :VNFYANLKT 1t0hB 290 :SNTRSSLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30184 # 1rz2A.162.144 read from T0287.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)F164 (1rz2A)M147 because S (epsilon) conformation "forbidden" or filtered. T0287 162 :VN 1rz2A 145 :GS T0287 165 :YANLKT 1rz2A 148 :FGSLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30186 # 1zavA.162.128 read from T0287.t06.many.frag # found chain 1zavA in template set T0287 162 :VNFYANLKT 1zavA 128 :VENIAKLPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30187 # 1hp1A.162.298 read from T0287.t06.many.frag # found chain 1hp1A in training set Warning: unaligning (T0287)N163 (1hp1A)L334 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1hp1A 333 :V T0287 164 :FYANLKT 1hp1A 335 :YTPEIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30189 # 1xdnA.162.71 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)N163 (1xdnA)N120 because P (beta_P) conformation "forbidden" or filtered. T0287 162 :V 1xdnA 119 :E T0287 164 :FYANLKT 1xdnA 121 :FFGYHIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30191 # 1g5aA.162.105 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 162 :VNFYANLKT 1g5aA 106 :DLFAGDLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30192 # 1zdyA.162.128 read from T0287.t06.many.frag # found chain 1zdyA in template set T0287 162 :VNFYANLKT 1zdyA 129 :MPGVAELSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30193 # 1dqzA.162.44 read from T0287.t06.many.frag # found chain 1dqzA in training set Warning: unaligning (T0287)N167 (1dqzA)N52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)L168 (1dqzA)T53 because Y (epsilon') conformation "forbidden" or filtered. T0287 162 :VNFYA 1dqzA 47 :NGWDI T0287 169 :KT 1dqzA 54 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30195 # 1fo8A.162.74 read from T0287.t06.many.frag # found chain 1fo8A in training set T0287 162 :VNFYANLKT 1fo8A 179 :RKFQGYYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30196 # 2ex0A.162.177 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 162 :VNFYANLKT 2ex0A 202 :TDYFEKAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30197 # 1ngmB.162.35 read from T0287.t06.many.frag # found chain 1ngmB in template set Warning: unaligning (T0287)A166 (1ngmB)L474 because D (zeta) conformation "forbidden" or filtered. T0287 162 :VNFY 1ngmB 470 :LNAH T0287 167 :NLKT 1ngmB 475 :LNEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30199 # 1i60A.162.251 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 162 :VNFYANLKT 1i60A 252 :YYKLTAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30200 # 1txoA.162.198 read from T0287.t06.many.frag # found chain 1txoA in template set T0287 162 :VNFYANLKT 1txoA 202 :ILEALQIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30201 # 1qgiA.162.120 read from T0287.t06.many.frag # found chain 1qgiA in training set T0287 162 :VNFYANLKT 1qgiA 121 :KVFCGKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30202 # 2ar0A.162.485 read from T0287.t06.many.frag # found chain 2ar0A in template set T0287 162 :VNFYANLKT 2ar0A 486 :VLAAEAMGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30203 # 1gw5S.163.75 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 163 :NFYANLKTI 1gw5S 76 :NNLAYLEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30204 # 1xg8A.163.19 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 163 :NFYANLKTI 1xg8A 11 :ASCVNAPTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30205 # 1josA.163.62 read from T0287.t06.many.frag # found chain 1josA in training set T0287 163 :NFYANLKTI 1josA 63 :AIEQGMKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30206 # 1e0tA.163.316 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTI 1e0tA 322 :LEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30207 # 2c60A.163.78 read from T0287.t06.many.frag # found chain 2c60A in template set T0287 163 :NFYANLKTI 2c60A 92 :ILLKNQDDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30208 # 2bgcA.163.206 read from T0287.t06.many.frag # found chain 2bgcA in template set Warning: unaligning (T0287)N163 (2bgcA)F206 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 2bgcA 207 :YVQNLDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30209 # 1dmgA.163.23 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 163 :NFYANLKTI 1dmgA 25 :NIDPNYDVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30210 # 1h5rA.163.184 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 163 :NFYAN 1h5rA 185 :QMAKN T0287 170 :TI 1h5rA 192 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30212 # 1g5aA.163.106 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 1g5aA 107 :LFAG T0287 168 :LKTI 1g5aA 112 :LKGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30214 # 1uf3A.163.12 read from T0287.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NF 1uf3A 13 :NP T0287 167 :NLKTI 1uf3A 17 :DLEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30216 # 2ex0A.163.178 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 163 :NFYANLKTI 2ex0A 203 :DYFEKAEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30217 # 1rcwA.163.106 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 163 :NFYANLKTI 1rcwA 107 :EAHEPSEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30218 # 1l3lA.163.143 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 163 :NFYANLKTI 1l3lA 144 :DAVAAAATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30219 # 1thtA.163.241 read from T0287.t06.many.frag # found chain 1thtA in template set Warning: unaligning (T0287)N167 (1thtA)N246 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 1thtA 242 :DLGE T0287 168 :LKTI 1thtA 247 :LVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30221 # 1xdnA.163.72 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. T0287 163 :NF 1xdnA 120 :NF T0287 166 :ANLKTI 1xdnA 123 :GYHILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30223 # 1vk4A.163.189 read from T0287.t06.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)N167 (1vk4A)G182 because T (delta_L) conformation "forbidden" or filtered. T0287 163 :NFYA 1vk4A 178 :ETLT T0287 168 :LKTI 1vk4A 183 :TNDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30225 # 1vliA.163.260 read from T0287.t06.many.frag # found chain 1vliA in template set Warning: unaligning (T0287)N163 because of BadResidue code BAD_PEPTIDE at template residue (1vliA)S249 Warning: unaligning (T0287)N167 (1vliA)N253 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYA 1vliA 250 :FAL T0287 168 :LKTI 1vliA 254 :PDEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30227 # 1fm0D.163.19 read from T0287.t06.many.frag # found chain 1fm0D in training set T0287 163 :NFYANLKTI 1fm0D 20 :EVAADFPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30228 # 1rz2A.163.145 read from T0287.t06.many.frag # found chain 1rz2A in training set Warning: unaligning (T0287)N163 (1rz2A)S146 because P (beta_P) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1rz2A 147 :MFGSLKKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30229 # 1wo8A.163.104 read from T0287.t06.many.frag # found chain 1wo8A in template set Warning: unaligning (T0287)N167 (1wo8A)N109 because Y (epsilon') conformation "forbidden" or filtered. T0287 163 :NFYA 1wo8A 105 :PLAT T0287 168 :LKTI 1wo8A 110 :LVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30231 # 1uhvA.163.73 read from T0287.t06.many.frag # found chain 1uhvA in template set T0287 163 :NFYANLKTI 1uhvA 74 :KPFYNFTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30232 # 1t0hB.163.89 read from T0287.t06.many.frag # found chain 1t0hB in template set T0287 163 :NFYANLKTI 1t0hB 291 :NTRSSLAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30233 # 1qnrA.163.132 read from T0287.t06.many.frag # found chain 1qnrA in training set Warning: unaligning (T0287)N167 (1qnrA)N137 because P (beta_P) conformation "forbidden" or filtered. T0287 163 :NFYA 1qnrA 133 :TWYT T0287 168 :LKTI 1qnrA 138 :TAAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30235 # 1rkuA.163.62 read from T0287.t06.many.frag # found chain 1rkuA in training set T0287 163 :NFYANLKTI 1rkuA 62 :EVIATLKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30236 # 1eokA.163.56 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N163 (1eokA)G57 because S (epsilon) conformation "forbidden" or filtered. T0287 164 :FYANLKTI 1eokA 58 :MMGSFKSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30237 # 1txoA.163.199 read from T0287.t06.many.frag # found chain 1txoA in template set T0287 163 :NFYANLKTI 1txoA 203 :LEALQIPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30238 # 1fo8A.163.75 read from T0287.t06.many.frag # found chain 1fo8A in training set T0287 163 :NFYANLKTI 1fo8A 180 :KFQGYYKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30239 # 1t77A.163.316 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 163 :NFYANLKTI 1t77A 2392 :ELPPWAKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30240 # 2bw4A.163.190 read from T0287.t06.many.frag # found chain 2bw4A in template set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bw4A)Y196 Warning: unaligning (T0287)L168 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bw4A)Y196 T0287 163 :NFYA 2bw4A 191 :GNYK T0287 169 :KTI 2bw4A 197 :ETP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30242 # 1f06A.163.86 read from T0287.t06.many.frag # found chain 1f06A in template set T0287 163 :NFYANLKTI 1f06A 87 :DTYDNHRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30243 # 1xg8A.164.20 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 164 :FYANLKTIE 1xg8A 12 :SCVNAPTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30244 # 1josA.164.63 read from T0287.t06.many.frag # found chain 1josA in training set T0287 164 :FYANLKTIE 1josA 64 :IEQGMKGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30245 # 1gw5S.164.76 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 164 :FYANLKTIE 1gw5S 77 :NLAYLEAIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30246 # 1e0tA.164.317 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIE 1e0tA 322 :LEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30247 # 1dmgA.164.24 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 164 :FYANLKTIE 1dmgA 26 :IDPNYDVMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30248 # 1xdnA.164.73 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :F 1xdnA 121 :F T0287 167 :NLKTIE 1xdnA 124 :YHILID Number of specific fragments extracted= 2 number of extra gaps= 1 total=30250 # 1uf3A.164.13 read from T0287.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1uf3A)G16 because T (delta_L) conformation "forbidden" or filtered. T0287 164 :F 1uf3A 14 :P T0287 167 :NLKTIE 1uf3A 17 :DLEALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30252 # 2c60A.164.79 read from T0287.t06.many.frag # found chain 2c60A in template set T0287 164 :FYANLKTIE 2c60A 93 :LLKNQDDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30253 # 1t77A.164.317 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 164 :FYANLKTIE 1t77A 2393 :LPPWAKTSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30254 # 2bgcA.164.207 read from T0287.t06.many.frag # found chain 2bgcA in template set T0287 164 :FYANLKTIE 2bgcA 207 :YVQNLDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30255 # 1g5aA.164.107 read from T0287.t06.many.frag # found chain 1g5aA in training set T0287 164 :FYANLKTIE 1g5aA 108 :FAGDLKGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30256 # 1eokA.164.57 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)N167 (1eokA)S61 because G (3-10) conformation "forbidden" or filtered. T0287 164 :FYA 1eokA 58 :MMG T0287 168 :LKTIE 1eokA 62 :FKSYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30258 # 2ex0A.164.179 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 164 :FYANLKTIE 2ex0A 204 :YFEKAEFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30259 # 1wo8A.164.105 read from T0287.t06.many.frag # found chain 1wo8A in template set T0287 164 :FYANLKTIE 1wo8A 106 :LATNLVAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30260 # 1vliA.164.261 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 164 :FYANLKTIE 1vliA 250 :FALNPDELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30261 # 1thtA.164.242 read from T0287.t06.many.frag # found chain 1thtA in template set T0287 164 :FYANLKTIE 1thtA 243 :LGENLVVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30262 # 1f06A.164.87 read from T0287.t06.many.frag # found chain 1f06A in template set T0287 164 :FYANLKTIE 1f06A 88 :TYDNHRDIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30263 # 1wa5C.164.75 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 164 :FYANLKTIE 1wa5C 76 :HLLPANNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30264 # 1rcwA.164.107 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 164 :FYANLKTIE 1rcwA 108 :AHEPSEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30265 # 2ak3A.164.164 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 164 :FYANLKTIE 2ak3A 164 :PETVVKRLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30266 # 2exrA.164.447 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 164 :FYANLKTIE 2exrA 448 :PCAKVSSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30267 # 1t0hB.164.90 read from T0287.t06.many.frag # found chain 1t0hB in template set T0287 164 :FYANLKTIE 1t0hB 292 :TRSSLAEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30268 # 1xrjA.164.210 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 164 :FYANLKTIE 1xrjA 211 :GADNLVAIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30269 # 1vjuA.164.142 read from T0287.t06.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)F164 because of BadResidue code BAD_PEPTIDE at template residue (1vjuA)Y143 T0287 165 :YANLKTIE 1vjuA 144 :YAVEEDCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30270 # 1uhvA.164.74 read from T0287.t06.many.frag # found chain 1uhvA in template set Warning: unaligning (T0287)A166 (1uhvA)Y77 because D (zeta) conformation "forbidden" or filtered. T0287 164 :FY 1uhvA 75 :PF T0287 167 :NLKTIE 1uhvA 78 :NFTYID Number of specific fragments extracted= 2 number of extra gaps= 1 total=30272 # 1l3lA.164.144 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 164 :FYANLKTIE 1l3lA 145 :AVAAAATIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30273 # 1f35A.164.113 read from T0287.t06.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 164 :FY 1f35A 115 :MD T0287 167 :NLKTIE 1f35A 118 :NEADAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30275 # 2fb5A.164.42 read from T0287.t06.many.frag # found chain 2fb5A in template set T0287 164 :FYANLKTIE 2fb5A 43 :ILCKMEDIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30276 # 1h5rA.164.185 read from T0287.t06.many.frag # found chain 1h5rA in template set Warning: unaligning (T0287)L168 because of BadResidue code BAD_PEPTIDE in next template residue (1h5rA)K191 Warning: unaligning (T0287)K169 because of BadResidue code BAD_PEPTIDE at template residue (1h5rA)K191 T0287 164 :FYAN 1h5rA 186 :MAKN T0287 170 :TIE 1h5rA 192 :PSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30278 # 2al2A.164.213 read from T0287.t06.many.frag # found chain 2al2A in template set T0287 164 :FYANLKTIE 2al2A 214 :VAPNIQTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30279 # 1xg8A.165.21 read from T0287.t06.many.frag # found chain 1xg8A in template set Warning: unaligning (T0287)K169 (1xg8A)P17 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :YANL 1xg8A 13 :CVNA T0287 170 :TIEQ 1xg8A 18 :TSKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30281 # 1josA.165.64 read from T0287.t06.many.frag # found chain 1josA in training set T0287 165 :YANLKTIEQ 1josA 65 :EQGMKGLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30282 # 1gw5S.165.77 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 165 :YANLKTIEQ 1gw5S 78 :LAYLEAIHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30283 # 1e0tA.165.318 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30284 # 1t77A.165.318 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 165 :YANLKTIEQ 1t77A 2394 :PPWAKTSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30285 # 1eokA.165.58 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 165 :YANLKTIEQ 1eokA 59 :MGSFKSYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30286 # 1uf3A.165.14 read from T0287.t06.many.frag # found chain 1uf3A in template set Warning: unaligning (T0287)Y165 (1uf3A)M15 because L (left) conformation "forbidden" or filtered. T0287 166 :ANLKTIEQ 1uf3A 16 :GDLEALEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30287 # 1vliA.165.262 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 165 :YANLKTIEQ 1vliA 251 :ALNPDELKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30288 # 2ex0A.165.180 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 165 :YANLKTIEQ 2ex0A 205 :FEKAEFLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30289 # 1dmgA.165.25 read from T0287.t06.many.frag # found chain 1dmgA in training set Warning: unaligning (T0287)A166 (1dmgA)P28 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 1dmgA 27 :D T0287 167 :NLKTIEQ 1dmgA 29 :NYDVMWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30291 # 1g5aA.165.108 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)A166 (1g5aA)G110 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1g5aA 109 :A T0287 168 :LKTIEQ 1g5aA 112 :LKGLKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30293 # 2exrA.165.448 read from T0287.t06.many.frag # found chain 2exrA in template set Warning: unaligning (T0287)A166 (2exrA)A450 because P (beta_P) conformation "forbidden" or filtered. T0287 165 :Y 2exrA 449 :C T0287 167 :NLKTIEQ 2exrA 451 :KVSSVEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30295 # 2c60A.165.80 read from T0287.t06.many.frag # found chain 2c60A in template set Warning: unaligning (T0287)N167 (2c60A)N96 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :YA 2c60A 94 :LK T0287 168 :LKTIEQ 2c60A 97 :QDDLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30297 # 1wa5C.165.76 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 165 :YANLKTIEQ 1wa5C 77 :LLPANNVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30298 # 1xdnA.165.74 read from T0287.t06.many.frag # found chain 1xdnA in training set Warning: unaligning (T0287)Y165 (1xdnA)F122 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)A166 (1xdnA)G123 because T (delta_L) conformation "forbidden" or filtered. T0287 167 :NLKTIEQ 1xdnA 124 :YHILIDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30299 # 2ak3A.165.165 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 165 :YANLKTIEQ 2ak3A 165 :ETVVKRLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30300 # 2bgcA.165.208 read from T0287.t06.many.frag # found chain 2bgcA in template set T0287 165 :YANLKTIEQ 2bgcA 208 :VQNLDYLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30301 # 1e4fT.165.163 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 165 :YANLKTIEQ 1e4fT 164 :VVPLKVYEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30302 # 1wo8A.165.106 read from T0287.t06.many.frag # found chain 1wo8A in template set T0287 165 :YANLKTIEQ 1wo8A 107 :ATNLVAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30303 # 1f06A.165.88 read from T0287.t06.many.frag # found chain 1f06A in template set T0287 165 :YANLKTIEQ 1f06A 89 :YDNHRDIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30304 # 1vjuA.165.143 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 165 :YANLKTIEQ 1vjuA 144 :YAVEEDCRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30305 # 1xrjA.165.211 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 165 :YANLKTIEQ 1xrjA 212 :ADNLVAINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30306 # 1auoA.165.77 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 165 :YANLKTIEQ 1auoA 78 :SISLEELEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30307 # 2fb5A.165.43 read from T0287.t06.many.frag # found chain 2fb5A in template set T0287 165 :YANLKTIEQ 2fb5A 44 :LCKMEDIHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30308 # 1rcwA.165.108 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 165 :YANLKTIEQ 1rcwA 109 :HEPSEAAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30309 # 1ryiA.165.281 read from T0287.t06.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE in next template residue (1ryiA)D271 Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 165 :Y 1ryiA 269 :T T0287 168 :LKTIEQ 1ryiA 272 :LGGLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=30311 # 1wdaA.165.535 read from T0287.t06.many.frag # found chain 1wdaA in template set T0287 165 :YANLKTIEQ 1wdaA 529 :ILSNKTLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30312 # 2al2A.165.214 read from T0287.t06.many.frag # found chain 2al2A in template set T0287 165 :YANLKTIEQ 2al2A 215 :APNIQTAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30313 # 1i60A.165.254 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 165 :YANLKTIEQ 1i60A 255 :LTAEEAIQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30314 # 1f35A.165.114 read from T0287.t06.many.frag # found chain 1f35A in template set Warning: unaligning (T0287)A166 (1f35A)W117 because Y (epsilon') conformation "forbidden" or filtered. T0287 165 :Y 1f35A 116 :D T0287 167 :NLKTIEQ 1f35A 118 :NEADALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30316 # 1gw5S.166.78 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 166 :ANLKTIEQY 1gw5S 79 :AYLEAIHNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30317 # 1josA.166.65 read from T0287.t06.many.frag # found chain 1josA in training set T0287 166 :ANLKTIEQY 1josA 66 :QGMKGLEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30318 # 1xg8A.166.22 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 166 :ANLKTIEQY 1xg8A 14 :VNAPTSKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30319 # 1e0tA.166.319 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30320 # 1t77A.166.319 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 166 :ANLKTIEQY 1t77A 2395 :PWAKTSEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30321 # 1eokA.166.59 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 166 :ANLKTIEQY 1eokA 60 :GSFKSYKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30322 # 1rttA.166.57 read from T0287.t06.many.frag # found chain 1rttA in training set Warning: unaligning (T0287)A166 (1rttA)G58 because S (epsilon) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1rttA 59 :FPPAVERF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30323 # 1uf3A.166.15 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 166 :ANLKTIEQY 1uf3A 16 :GDLEALEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30324 # 2ak3A.166.166 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 166 :ANLKTIEQY 2ak3A 166 :TVVKRLKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30325 # 1ynbA.166.110 read from T0287.t06.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 166 :ANLKT 1ynbA 111 :PDFSD T0287 172 :EQY 1ynbA 117 :EVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30327 # 1xrjA.166.212 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 166 :ANLKTIEQY 1xrjA 213 :DNLVAINLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30328 # 2ex0A.166.181 read from T0287.t06.many.frag # found chain 2ex0A in template set T0287 166 :ANLKTIEQY 2ex0A 206 :EKAEFLQPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30329 # 1wa5C.166.77 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 166 :ANLKTIEQY 1wa5C 78 :LPANNVELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30330 # 1auoA.166.78 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 166 :ANLKTIEQY 1auoA 79 :ISLEELEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30331 # 1vjuA.166.144 read from T0287.t06.many.frag # found chain 1vjuA in training set Warning: unaligning (T0287)A166 (1vjuA)A145 because P (beta_P) conformation "forbidden" or filtered. T0287 167 :NLKTIEQY 1vjuA 146 :VEEDCRDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30332 # 1ro7A.166.106 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 166 :ANLKTIEQY 1ro7A 107 :DFFKQLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30333 # 2exrA.166.449 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 166 :ANLKTIEQY 2exrA 450 :AKVSSVEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30334 # 1vliA.166.263 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 166 :ANLKTIEQY 1vliA 252 :LNPDELKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30335 # 1xdnA.166.75 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 166 :ANLKTIEQY 1xdnA 123 :GYHILIDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30336 # 2a2mA.166.144 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 166 :ANLKTIEQY 2a2mA 133 :IPGTDIKDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30337 # 1g5aA.166.109 read from T0287.t06.many.frag # found chain 1g5aA in training set Warning: unaligning (T0287)N167 (1g5aA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0287 166 :A 1g5aA 110 :G T0287 168 :LKTIEQY 1g5aA 112 :LKGLKDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30339 # 1v0wA.166.383 read from T0287.t06.many.frag # found chain 1v0wA in training set Warning: unaligning (T0287)A166 because of BadResidue code BAD_PEPTIDE at template residue (1v0wA)S391 T0287 167 :NLKTIEQY 1v0wA 392 :QIKSLSEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30340 # 1e4fT.166.164 read from T0287.t06.many.frag # found chain 1e4fT in template set Warning: unaligning (T0287)N167 (1e4fT)P166 because P (beta_P) conformation "forbidden" or filtered. T0287 166 :A 1e4fT 165 :V T0287 168 :LKTIEQY 1e4fT 167 :LKVYEMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30342 # 1i60A.166.255 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 166 :ANLKTIEQY 1i60A 256 :TAEEAIQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30343 # 2fb5A.166.44 read from T0287.t06.many.frag # found chain 2fb5A in template set Warning: unaligning (T0287)N167 (2fb5A)K46 because G (3-10) conformation "forbidden" or filtered. T0287 166 :A 2fb5A 45 :C T0287 168 :LKTIEQY 2fb5A 47 :MEDIHHM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30345 # 1dmgA.166.26 read from T0287.t06.many.frag # found chain 1dmgA in training set T0287 166 :ANLKTIEQY 1dmgA 28 :PNYDVMWRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30346 # 1rcwA.166.109 read from T0287.t06.many.frag # found chain 1rcwA in template set T0287 166 :ANLKTIEQY 1rcwA 110 :EPSEAAKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30347 # 2fb0A.166.68 read from T0287.t06.many.frag # found chain 2fb0A in template set T0287 166 :ANLKTIEQY 2fb0A 66 :EKTAHFAQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30348 # 1t8kA.166.59 read from T0287.t06.many.frag # found chain 1t8kA in training set T0287 166 :ANLKTIEQY 1t8kA 60 :EKITTVQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30349 # 1wwpA.166.97 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 166 :ANLKTIEQY 1wwpA 98 :AIFRRLPDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30350 # 1josA.167.66 read from T0287.t06.many.frag # found chain 1josA in training set T0287 167 :NLKTIEQYN 1josA 67 :GMKGLEKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30351 # 1gw5S.167.79 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 167 :NLKTIEQYN 1gw5S 80 :YLEAIHNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30352 # 1xg8A.167.23 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 167 :NLKTIEQYN 1xg8A 15 :NAPTSKDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30353 # 1t77A.167.320 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 167 :NLKTIEQYN 1t77A 2396 :WAKTSEEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30354 # 1vjuA.167.145 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 167 :NLKTIEQYN 1vjuA 146 :VEEDCRDFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30355 # 1rttA.167.58 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 167 :NLKTIEQYN 1rttA 59 :FPPAVERFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30356 # 1ifqA.167.36 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 167 :NLKTIEQYN 1ifqA 26 :SGRDLQQYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30357 # 1auoA.167.79 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 167 :NLKTIEQYN 1auoA 80 :SLEELEVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30358 # 1e0tA.167.320 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)N167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)P321 Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30359 # 2ak3A.167.167 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 167 :NLKTIEQYN 2ak3A 167 :VVKRLKAYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30360 # 1uf3A.167.16 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 167 :NLKTIEQYN 1uf3A 17 :DLEALEKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30361 # 2exrA.167.450 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 167 :NLKTIEQYN 2exrA 451 :KVSSVEKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30362 # 1wa5C.167.78 read from T0287.t06.many.frag # found chain 1wa5C in template set Warning: unaligning (T0287)N167 (1wa5C)P79 because P (beta_P) conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 1wa5C 80 :ANNVELIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30363 # 1eokA.167.60 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 167 :NLKTIEQYN 1eokA 61 :SFKSYKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30364 # 1vliA.167.264 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 167 :NLKTIEQYN 1vliA 253 :NPDELKEMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30365 # 1ynbA.167.111 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 167 :NLKTIEQYN 1ynbA 112 :DFSDVEVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30366 # 1xrjA.167.213 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 167 :NLKTIEQYN 1xrjA 214 :NLVAINLIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30367 # 2a2mA.167.145 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 167 :NLKTIEQYN 2a2mA 134 :PGTDIKDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30368 # 1e4fT.167.165 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 167 :NLKTIEQYN 1e4fT 166 :PLKVYEMFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30369 # 1xdnA.167.76 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 167 :NLKTIEQYN 1xdnA 124 :YHILIDEFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30370 # 1i60A.167.256 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 167 :NLKTIEQYN 1i60A 257 :AEEAIQTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30371 # 1tr9A.167.310 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 167 :NLKTIEQYN 1tr9A 310 :RLERWQQAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30372 # 1ryiA.167.283 read from T0287.t06.many.frag # found chain 1ryiA in training set Warning: unaligning (T0287)N167 because of BadResidue code BAD_PEPTIDE at template residue (1ryiA)D271 T0287 168 :LKTIEQYN 1ryiA 272 :LGGLESVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=30373 # 1wwpA.167.98 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 167 :NLKTIEQYN 1wwpA 99 :IFRRLPDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30374 # 2cxaA.167.216 read from T0287.t06.many.frag # found chain 2cxaA in template set Warning: unaligning (T0287)N167 (2cxaA)C200 because Y (epsilon') conformation "forbidden" or filtered. T0287 168 :LKTIEQYN 2cxaA 201 :EIPRRDYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30375 # 1ro7A.167.107 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 167 :NLKTIEQYN 1ro7A 108 :FFKQLKDFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30376 # 1itxA.167.143 read from T0287.t06.many.frag # found chain 1itxA in training set T0287 167 :NLKTIEQYN 1itxA 176 :TAATREVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30377 # 7a3hA.167.240 read from T0287.t06.many.frag # found chain 7a3hA in training set T0287 167 :NLKTIEQYN 7a3hA 241 :FLDEAQVWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30378 # 1wzdA.167.164 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 167 :NLKTIEQYN 1wzdA 165 :GIAKLKVYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30379 # 2fb5A.167.45 read from T0287.t06.many.frag # found chain 2fb5A in template set T0287 167 :NLKTIEQYN 2fb5A 46 :KMEDIHHML Number of specific fragments extracted= 1 number of extra gaps= 0 total=30380 # 1ifqA.168.37 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 168 :LKTIEQYND 1ifqA 27 :GRDLQQYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30381 # 1josA.168.67 read from T0287.t06.many.frag # found chain 1josA in training set T0287 168 :LKTIEQYND 1josA 68 :MKGLEKASP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30382 # 1ro7A.168.108 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 168 :LKTIEQYND 1ro7A 109 :FKQLKDFNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30383 # 1xg8A.168.24 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 168 :LKTIEQYND 1xg8A 16 :APTSKDIYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30384 # 1gw5S.168.80 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 168 :LKTIEQYND 1gw5S 81 :LEAIHNFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30385 # 1vjuA.168.146 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 168 :LKTIEQYND 1vjuA 147 :EEDCRDFHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30386 # 1vliA.168.265 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 168 :LKTIEQYND 1vliA 254 :PDELKEMVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30387 # 2a2mA.168.146 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 168 :LKTIEQYND 2a2mA 135 :GTDIKDYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30388 # 1wwpA.168.99 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 168 :LKTIEQYND 1wwpA 100 :FRRLPDYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30389 # 1rttA.168.59 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 168 :LKTIEQYND 1rttA 60 :PPAVERFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30390 # 1auoA.168.80 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 168 :LKTIEQYND 1auoA 81 :LEELEVSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30391 # 1t77A.168.321 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 168 :LKTIEQYND 1t77A 2397 :AKTSEEFVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30392 # 1ynbA.168.112 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 168 :LKTIEQYND 1ynbA 113 :FSDVEVYVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30393 # 2exrA.168.451 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 168 :LKTIEQYND 2exrA 452 :VSSVEKMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30394 # 1tr9A.168.311 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 168 :LKTIEQYND 1tr9A 311 :LERWQQASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30395 # 1uf3A.168.17 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 168 :LKTIEQYND 1uf3A 18 :LEALEKFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30396 # 1xdnA.168.77 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 168 :LKTIEQYND 1xdnA 125 :HILIDEFTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30397 # 1f5qB.168.225 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 168 :LKTIEQYND 1f5qB 226 :KEELHQCCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30398 # 1e0tA.168.321 read from T0287.t06.many.frag # found chain 1e0tA in training set Warning: unaligning (T0287)Y174 because of BadResidue code BAD_PEPTIDE in next template residue (1e0tA)A329 Warning: unaligning (T0287)N175 because of BadResidue code BAD_PEPTIDE at template residue (1e0tA)A329 T0287 168 :LKTIEQ 1e0tA 322 :LEAVSI T0287 176 :D 1e0tA 330 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=30400 # 1eokA.168.61 read from T0287.t06.many.frag # found chain 1eokA in training set T0287 168 :LKTIEQYND 1eokA 62 :FKSYKDLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30401 # 2cxaA.168.217 read from T0287.t06.many.frag # found chain 2cxaA in template set T0287 168 :LKTIEQYND 2cxaA 201 :EIPRRDYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30402 # 2ak3A.168.168 read from T0287.t06.many.frag # found chain 2ak3A in template set T0287 168 :LKTIEQYND 2ak3A 168 :VKRLKAYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30403 # 1xrjA.168.214 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 168 :LKTIEQYND 1xrjA 215 :LVAINLIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30404 # 1wa5C.168.79 read from T0287.t06.many.frag # found chain 1wa5C in template set T0287 168 :LKTIEQYND 1wa5C 80 :ANNVELIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30405 # 1wzdA.168.165 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 168 :LKTIEQYND 1wzdA 166 :IAKLKVYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30406 # 2fb0A.168.70 read from T0287.t06.many.frag # found chain 2fb0A in template set T0287 168 :LKTIEQYND 2fb0A 68 :TAHFAQYVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30407 # 1e4fT.168.166 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 168 :LKTIEQYND 1e4fT 167 :LKVYEMFYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30408 # 1i60A.168.257 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 168 :LKTIEQYND 1i60A 258 :EEAIQTAKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30409 # 1xqwA.168.274 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 168 :LKTIEQYND 1xqwA 275 :WEDREGYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30410 # 2bgcA.168.211 read from T0287.t06.many.frag # found chain 2bgcA in template set T0287 168 :LKTIEQYND 2bgcA 211 :LDYLKRYAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30411 # 1ifqA.169.38 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 169 :KTIEQYNDY 1ifqA 28 :RDLQQYQSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30412 # 1ro7A.169.109 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 169 :KTIEQYNDY 1ro7A 110 :KQLKDFNAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30413 # 1vjuA.169.147 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 169 :KTIEQYNDY 1vjuA 148 :EDCRDFHQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30414 # 1josA.169.68 read from T0287.t06.many.frag # found chain 1josA in training set T0287 169 :KTIEQYNDY 1josA 69 :KGLEKASPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30415 # 2a2mA.169.147 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 169 :KTIEQYNDY 2a2mA 136 :TDIKDYADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30416 # 1xdnA.169.78 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 169 :KTIEQYNDY 1xdnA 126 :ILIDEFTAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30417 # 1wwpA.169.100 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 169 :KTIEQYNDY 1wwpA 101 :RRLPDYARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30418 # 1auoA.169.81 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 169 :KTIEQYNDY 1auoA 82 :EELEVSAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30419 # 1vliA.169.266 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 169 :KTIEQYNDY 1vliA 255 :DELKEMVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30420 # 1f5qB.169.226 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 169 :KTIEQYNDY 1f5qB 227 :EELHQCCDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30421 # 1xqwA.169.275 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 169 :KTIEQYNDY 1xqwA 276 :EDREGYNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30422 # 1xg8A.169.25 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 169 :KTIEQYNDY 1xg8A 17 :PTSKDIYDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30423 # 1rttA.169.60 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 169 :KTIEQYNDY 1rttA 61 :PAVERFREQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30424 # 1gw5S.169.81 read from T0287.t06.many.frag # found chain 1gw5S in template set T0287 169 :KTIEQYNDY 1gw5S 82 :EAIHNFVEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30425 # 1qwtA.169.230 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 169 :KTIEQYNDY 1qwtA 403 :LTSDQYKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30426 # 1tr9A.169.312 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 169 :KTIEQYNDY 1tr9A 312 :ERWQQASAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30427 # 1t77A.169.322 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 169 :KTIEQYNDY 1t77A 2398 :KTSEEFVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30428 # 1uf3A.169.18 read from T0287.t06.many.frag # found chain 1uf3A in template set T0287 169 :KTIEQYNDY 1uf3A 19 :EALEKFVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30429 # 1wzdA.169.166 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 169 :KTIEQYNDY 1wzdA 167 :AKLKVYKDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30430 # 2f1rA.169.146 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 169 :KTIEQYNDY 2f1rA 147 :DEVERIAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30431 # 1ynbA.169.113 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 169 :KTIEQYNDY 1ynbA 114 :SDVEVYVSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30432 # 2exrA.169.452 read from T0287.t06.many.frag # found chain 2exrA in template set T0287 169 :KTIEQYNDY 2exrA 453 :SSVEKMVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30433 # 1xrjA.169.215 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 169 :KTIEQYNDY 1xrjA 216 :VAINLIVQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30434 # 1lvaA.169.198 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 169 :KTIEQYNDY 1lvaA 575 :QALGEAREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30435 # 1e4fT.169.167 read from T0287.t06.many.frag # found chain 1e4fT in template set T0287 169 :KTIEQYNDY 1e4fT 168 :KVYEMFYNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30436 # 1wduA.169.127 read from T0287.t06.many.frag # found chain 1wduA in template set T0287 169 :KTIEQYNDY 1wduA 131 :KPIESYLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30437 # 1eokA.169.62 read from T0287.t06.many.frag # found chain 1eokA in training set Warning: unaligning (T0287)T170 (1eokA)S64 because Y (epsilon') conformation "forbidden" or filtered. T0287 169 :K 1eokA 63 :K T0287 171 :IEQYNDY 1eokA 65 :YKDLDTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30439 # 1qnrA.169.138 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 169 :KTIEQYNDY 1qnrA 139 :AAQTQYRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30440 # 1z7aA.169.226 read from T0287.t06.many.frag # found chain 1z7aA in template set T0287 169 :KTIEQYNDY 1z7aA 227 :NNGEQFFQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30441 # 2cxaA.169.218 read from T0287.t06.many.frag # found chain 2cxaA in template set T0287 169 :KTIEQYNDY 2cxaA 202 :IPRRDYLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30442 # 1ifqA.170.39 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 170 :TIEQYNDYV 1ifqA 29 :DLQQYQSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30443 # 1f5qB.170.227 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 170 :TIEQYNDYV 1f5qB 228 :ELHQCCDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30444 # 1vjuA.170.148 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 170 :TIEQYNDYV 1vjuA 149 :DCRDFHQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30445 # 1ro7A.170.110 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 170 :TIEQYNDYV 1ro7A 111 :QLKDFNAYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30446 # 2a2mA.170.148 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 170 :TIEQYNDYV 2a2mA 137 :DIKDYADYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30447 # 1xqwA.170.276 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 170 :TIEQYNDYV 1xqwA 277 :DREGYNKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30448 # 1wwpA.170.101 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 170 :TIEQYNDYV 1wwpA 102 :RLPDYARLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30449 # 1josA.170.69 read from T0287.t06.many.frag # found chain 1josA in training set T0287 170 :TIEQYNDYV 1josA 70 :GLEKASPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30450 # 1qwtA.170.231 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 170 :TIEQYNDYV 1qwtA 404 :TSDQYKAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30451 # 1xdnA.170.79 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 170 :TIEQYNDYV 1xdnA 127 :LIDEFTAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30452 # 1auoA.170.82 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 170 :TIEQYNDYV 1auoA 83 :ELEVSAKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30453 # 1vliA.170.267 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 170 :TIEQYNDYV 1vliA 256 :ELKEMVDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30454 # 1wzdA.170.167 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 170 :TIEQYNDYV 1wzdA 168 :KLKVYKDEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30455 # 1wduA.170.128 read from T0287.t06.many.frag # found chain 1wduA in template set T0287 170 :TIEQYNDYV 1wduA 132 :PIESYLEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30456 # 1xg8A.170.26 read from T0287.t06.many.frag # found chain 1xg8A in template set T0287 170 :TIEQYNDYV 1xg8A 18 :TSKDIYDWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30457 # 1tr9A.170.313 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 170 :TIEQYNDYV 1tr9A 313 :RWQQASANM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30458 # 1qnrA.170.139 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 170 :TIEQYNDYV 1qnrA 140 :AQTQYRKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30459 # 1lvaA.170.199 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 170 :TIEQYNDYV 1lvaA 576 :ALGEAREVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30460 # 1wdaA.170.540 read from T0287.t06.many.frag # found chain 1wdaA in template set T0287 170 :TIEQYNDYV 1wdaA 534 :TLREHNSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30461 # 1rttA.170.61 read from T0287.t06.many.frag # found chain 1rttA in training set T0287 170 :TIEQYNDYV 1rttA 62 :AVERFREQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30462 # 1jl1A.170.128 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 170 :TIEQYNDYV 1jl1A 129 :ENERADELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30463 # 1ynbA.170.114 read from T0287.t06.many.frag # found chain 1ynbA in training set Warning: unaligning (T0287)I171 (1ynbA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 170 :T 1ynbA 115 :D T0287 172 :EQYNDYV 1ynbA 117 :EVYVSDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30465 # 1wouA.170.44 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 170 :TIEQYNDYV 1wouA 45 :DCVQAEPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30466 # 2f1rA.170.147 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 170 :TIEQYNDYV 2f1rA 148 :EVERIAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30467 # 1ntyA.170.294 read from T0287.t06.many.frag # found chain 1ntyA in training set T0287 170 :TIEQYNDYV 1ntyA 1519 :NKQDWIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30468 # 1tqhA.170.229 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 170 :TIEQYNDYV 1tqhA 230 :EKDQLHEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30469 # 1nznA.170.88 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 170 :TIEQYNDYV 1nznA 89 :EYEKALKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30470 # 1oltA.170.80 read from T0287.t06.many.frag # found chain 1oltA in template set T0287 170 :TIEQYNDYV 1oltA 81 :KADQYLDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30471 # 1xrjA.170.216 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 170 :TIEQYNDYV 1xrjA 217 :AINLIVQHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30472 # 2cxaA.170.219 read from T0287.t06.many.frag # found chain 2cxaA in template set T0287 170 :TIEQYNDYV 2cxaA 203 :PRRDYLNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30473 # 1f5qB.171.228 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 171 :IEQYNDYVR 1f5qB 229 :LHQCCDLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30474 # 1ifqA.171.40 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 171 :IEQYNDYVR 1ifqA 30 :LQQYQSQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30475 # 1vjuA.171.149 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 171 :IEQYNDYVR 1vjuA 150 :CRDFHQVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30476 # 2a2mA.171.149 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 171 :IEQYNDYVR 2a2mA 138 :IKDYADYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30477 # 1ro7A.171.111 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 171 :IEQYNDYVR 1ro7A 112 :LKDFNAYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30478 # 1xqwA.171.277 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 171 :IEQYNDYVR 1xqwA 278 :REGYNKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30479 # 1wwpA.171.102 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 171 :IEQYNDYVR 1wwpA 103 :LPDYARLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=30480 # 1qwtA.171.232 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 171 :IEQYNDYVR 1qwtA 405 :SDQYKAYLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30481 # 1auoA.171.83 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 171 :IEQYNDYVR 1auoA 84 :LEVSAKMVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30482 # 1wzdA.171.168 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 171 :IEQYNDYVR 1wzdA 169 :LKVYKDEYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30483 # 1xdnA.171.80 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 171 :IEQYNDYVR 1xdnA 128 :IDEFTAQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30484 # 1josA.171.70 read from T0287.t06.many.frag # found chain 1josA in training set T0287 171 :IEQYNDYVR 1josA 71 :LEKASPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30485 # 1lvaA.171.200 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 171 :IEQYNDYVR 1lvaA 577 :LGEAREVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30486 # 1jl1A.171.129 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 171 :IEQYNDYVR 1jl1A 130 :NERADELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30487 # 1vliA.171.268 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 171 :IEQYNDYVR 1vliA 257 :LKEMVDGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30488 # 1b3tA.171.111 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 171 :IEQYNDYVR 1b3tA 572 :AEVLKDAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30489 # 1wduA.171.129 read from T0287.t06.many.frag # found chain 1wduA in template set T0287 171 :IEQYNDYVR 1wduA 133 :IESYLEQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30490 # 1nznA.171.89 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 171 :IEQYNDYVR 1nznA 90 :YEKALKYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30491 # 1xodA.171.100 read from T0287.t06.many.frag # found chain 1xodA in training set T0287 171 :IEQYNDYVR 1xodA 106 :ARAFDRGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30492 # 2f1rA.171.148 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 171 :IEQYNDYVR 2f1rA 149 :VERIAEFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30493 # 1ntyA.171.295 read from T0287.t06.many.frag # found chain 1ntyA in training set T0287 171 :IEQYNDYVR 1ntyA 1520 :KQDWIKHIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30494 # 2b61A.171.362 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 171 :IEQYNDYVR 2b61A 344 :YDQFEKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30495 # 1xrjA.171.217 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 171 :IEQYNDYVR 1xrjA 218 :INLIVQHIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30496 # 1qnrA.171.140 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 171 :IEQYNDYVR 1qnrA 141 :QTQYRKYVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30497 # 1oltA.171.81 read from T0287.t06.many.frag # found chain 1oltA in template set T0287 171 :IEQYNDYVR 1oltA 82 :ADQYLDALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30498 # 1wouA.171.45 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 171 :IEQYNDYVR 1wouA 46 :CVQAEPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30499 # 1ynbA.171.115 read from T0287.t06.many.frag # found chain 1ynbA in training set T0287 171 :IEQYNDYVR 1ynbA 116 :VEVYVSDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30500 # 1tqhA.171.230 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 171 :IEQYNDYVR 1tqhA 231 :KDQLHEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30501 # 1w9cA.171.301 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 171 :IEQYNDYVR 1w9cA 1008 :IPAFKEHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30502 # 1l5oA.171.209 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 171 :IEQYNDYVR 1l5oA 210 :IDNKVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30503 # 1f5qB.172.229 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 172 :EQYNDYVRD 1f5qB 230 :HQCCDLVDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30504 # 1ifqA.172.41 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 172 :EQYNDYVRD 1ifqA 31 :QQYQSQAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30505 # 1xqwA.172.278 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 172 :EQYNDYVRD 1xqwA 279 :EGYNKLLSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30506 # 2a2mA.172.150 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 172 :EQYNDYVRD 2a2mA 139 :KDYADYEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30507 # 1vjuA.172.150 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 172 :EQYNDYVRD 1vjuA 151 :RDFHQVAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30508 # 1qwtA.172.233 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 172 :EQYNDYVRD 1qwtA 406 :DQYKAYLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30509 # 1wzdA.172.169 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 172 :EQYNDYVRD 1wzdA 170 :KVYKDEYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30510 # 1jl1A.172.130 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 172 :EQYNDYVRD 1jl1A 131 :ERADELARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30511 # 1auoA.172.84 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 172 :EQYNDYVRD 1auoA 85 :EVSAKMVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30512 # 1b3tA.172.112 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 172 :EQYNDYVRD 1b3tA 573 :EVLKDAIKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30513 # 1nznA.172.90 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 172 :EQYNDYVRD 1nznA 91 :EKALKYVRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30514 # 1ro7A.172.112 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 172 :EQYNDYVRD 1ro7A 113 :KDFNAYFKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30515 # 1wwpA.172.103 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 172 :EQYNDYVRD 1wwpA 104 :PDYARLMEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30516 # 1lvaA.172.201 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 172 :EQYNDYVRD 1lvaA 578 :GEAREVIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30517 # 1uddA.172.110 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 172 :EQYNDYVRD 1uddA 111 :SAYMDFMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30518 # 1xdnA.172.81 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 172 :EQYNDYVRD 1xdnA 129 :DEFTAQIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30519 # 1l5oA.172.210 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 172 :EQYNDYVRD 1l5oA 211 :DNKVDVVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30520 # 2f1rA.172.149 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 172 :EQYNDYVRD 2f1rA 150 :ERIAEFILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30521 # 1josA.172.71 read from T0287.t06.many.frag # found chain 1josA in training set T0287 172 :EQYNDYVRD 1josA 72 :EKASPYIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30522 # 1z77A.172.125 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 172 :EQYNDYVRD 1z77A 126 :RVFFDFVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30523 # 1w9cA.172.302 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 172 :EQYNDYVRD 1w9cA 1009 :PAFKEHLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30524 # 2b61A.172.363 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 172 :EQYNDYVRD 2b61A 345 :DQFEKRIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30525 # 1o6dA.172.80 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 172 :EQYNDYVRD 1o6dA 79 :EEFADFLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30526 # 1xodA.172.101 read from T0287.t06.many.frag # found chain 1xodA in training set T0287 172 :EQYNDYVRD 1xodA 107 :RAFDRGIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30527 # 1wdaA.172.542 read from T0287.t06.many.frag # found chain 1wdaA in template set T0287 172 :EQYNDYVRD 1wdaA 536 :REHNSFVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=30528 # 2gmfA.172.103 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 172 :EQYNDYVRD 2gmfA 104 :ESFKENLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30529 # 1qnrA.172.141 read from T0287.t06.many.frag # found chain 1qnrA in training set T0287 172 :EQYNDYVRD 1qnrA 142 :TQYRKYVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30530 # 1vliA.172.269 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 172 :EQYNDYVRD 1vliA 258 :KEMVDGIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30531 # 1tqhA.172.231 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 172 :EQYNDYVRD 1tqhA 232 :DQLHEDIYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30532 # 1wouA.172.46 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 172 :EQYNDYVRD 1wouA 47 :VQAEPVVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30533 # 1f5qB.173.230 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 173 :QYNDYVRDL 1f5qB 231 :QCCDLVDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30534 # 1ifqA.173.42 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 173 :QYNDYVRDL 1ifqA 32 :QYQSQAKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30535 # 1qwtA.173.234 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 173 :QYNDYVRDL 1qwtA 407 :QYKAYLQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30536 # 1xqwA.173.279 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 173 :QYNDYVRDL 1xqwA 280 :GYNKLLSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30537 # 1b3tA.173.113 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 173 :QYNDYVRDL 1b3tA 574 :VLKDAIKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30538 # 1vjuA.173.151 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 173 :QYNDYVRDL 1vjuA 152 :DFHQVAQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30539 # 1jl1A.173.131 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 173 :QYNDYVRDL 1jl1A 132 :RADELARAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30540 # 1auoA.173.85 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 173 :QYNDYVRDL 1auoA 86 :VSAKMVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30541 # 2a2mA.173.151 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 173 :QYNDYVRDL 2a2mA 140 :DYADYEAYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30542 # 1wzdA.173.170 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 173 :QYNDYVRDL 1wzdA 171 :VYKDEYREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30543 # 1lvaA.173.202 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 173 :QYNDYVRDL 1lvaA 579 :EAREVIKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30544 # 1z77A.173.126 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 173 :QYNDYVRDL 1z77A 127 :VFFDFVREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30545 # 2b61A.173.364 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 173 :QYNDYVRDL 2b61A 346 :QFEKRIRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30546 # 1nznA.173.91 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 173 :QYNDYVRDL 1nznA 92 :KALKYVRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30547 # 2gmfA.173.104 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 173 :QYNDYVRDL 2gmfA 105 :SFKENLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30548 # 2f1rA.173.150 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 173 :QYNDYVRDL 2f1rA 151 :RIAEFILSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30549 # 1wwpA.173.104 read from T0287.t06.many.frag # found chain 1wwpA in template set T0287 173 :QYNDYVRDL 1wwpA 105 :DYARLMEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30550 # 1ro7A.173.113 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 173 :QYNDYVRDL 1ro7A 114 :DFNAYFKFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30551 # 1l5oA.173.211 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 173 :QYNDYVRDL 1l5oA 212 :NKVDVVRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30552 # 1w9cA.173.303 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 173 :QYNDYVRDL 1w9cA 1010 :AFKEHLRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30553 # 1xdnA.173.82 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 173 :QYNDYVRDL 1xdnA 130 :EFTAQIRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30554 # 1wouA.173.47 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 173 :QYNDYVRDL 1wouA 48 :QAEPVVREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30555 # 1xodA.173.102 read from T0287.t06.many.frag # found chain 1xodA in training set T0287 173 :QYNDYVRDL 1xodA 108 :AFDRGIRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30556 # 1izmA.173.155 read from T0287.t06.many.frag # found chain 1izmA in template set T0287 173 :QYNDYVRDL 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30557 # 2d0tA.173.304 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 173 :QYNDY 2d0tA 302 :AHRNF T0287 180 :DL 2d0tA 309 :SL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30559 # 1josA.173.72 read from T0287.t06.many.frag # found chain 1josA in training set T0287 173 :QYNDYVRDL 1josA 73 :KASPYIRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30560 # 1tqhA.173.232 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 173 :QYNDYVRDL 1tqhA 233 :QLHEDIYAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30561 # 1xrjA.173.219 read from T0287.t06.many.frag # found chain 1xrjA in template set T0287 173 :QYNDYVRDL 1xrjA 220 :LIVQHIQDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30562 # 1jl0A.173.262 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 173 :QYNDYVRDL 1jl0A 263 :SYDDLIRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30563 # 1vliA.173.270 read from T0287.t06.many.frag # found chain 1vliA in template set T0287 173 :QYNDYVRDL 1vliA 259 :EMVDGIRKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30564 # 1f5qB.174.231 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 174 :YNDYVRDLL 1f5qB 232 :CCDLVDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30565 # 1ifqA.174.43 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 174 :YNDYVRDLL 1ifqA 33 :YQSQAKQLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30566 # 1qwtA.174.235 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 174 :YNDYVRDLL 1qwtA 408 :YKAYLQDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30567 # 1b3tA.174.114 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 174 :YNDYVRDLL 1b3tA 575 :LKDAIKDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30568 # 1jl1A.174.132 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 174 :YNDYVRDLL 1jl1A 133 :ADELARAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30569 # 1z77A.174.127 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 174 :YNDYVRDLL 1z77A 128 :FFDFVREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30570 # 1xqwA.174.280 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 174 :YNDYVRDLL 1xqwA 281 :YNKLLSDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30571 # 1nznA.174.92 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 174 :YNDYVRDLL 1nznA 93 :ALKYVRGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30572 # 1vjuA.174.152 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 174 :YNDYVRDLL 1vjuA 153 :FHQVAQDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=30573 # 2b61A.174.365 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 174 :YNDYVRDLL 2b61A 347 :FEKRIRDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30574 # 2gmfA.174.105 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 174 :YNDYVRDLL 2gmfA 106 :FKENLKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30575 # 1wzdA.174.171 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 174 :YNDYVRDLL 1wzdA 172 :YKDEYREKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30576 # 1lvaA.174.203 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 174 :YNDYVRDLL 1lvaA 580 :AREVIKNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30577 # 1auoA.174.86 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 174 :YNDYVRDLL 1auoA 87 :SAKMVTDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30578 # 2f1rA.174.151 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 174 :YNDYVRDLL 2f1rA 152 :IAEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30579 # 1l5oA.174.212 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 174 :YNDYVRDLL 1l5oA 213 :KVDVVRRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30580 # 1w9cA.174.304 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 174 :YNDYVRDLL 1w9cA 1011 :FKEHLRDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30581 # 1wouA.174.48 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 174 :YNDYVRDLL 1wouA 49 :AEPVVREGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30582 # 1l5aA.174.297 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 174 :YNDYVRDLL 1l5aA 298 :SGQAIRSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30583 # 2a2mA.174.152 read from T0287.t06.many.frag # found chain 2a2mA in template set T0287 174 :YNDYVRDLL 2a2mA 141 :YADYEAYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30584 # 1uddA.174.112 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 174 :YNDYVRDLL 1uddA 113 :YMDFMLATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30585 # 1qw9A.174.263 read from T0287.t06.many.frag # found chain 1qw9A in training set T0287 174 :YNDYVRDLL 1qw9A 264 :MDDFIRSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30586 # 2d0tA.174.305 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 174 :YNDY 2d0tA 303 :HRNF T0287 180 :DLL 2d0tA 309 :SLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30588 # 1xdnA.174.83 read from T0287.t06.many.frag # found chain 1xdnA in training set T0287 174 :YNDYVRDLL 1xdnA 131 :FTAQIRILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30589 # 1o6dA.174.82 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 174 :YNDYVRDLL 1o6dA 81 :FADFLKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30590 # 1izmA.174.156 read from T0287.t06.many.frag # found chain 1izmA in template set T0287 174 :YNDYVRDLL 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30591 # 1uh4A.174.444 read from T0287.t06.many.frag # found chain 1uh4A in template set T0287 174 :YNDYVRDLL 1uh4A 445 :FDSWLRGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30592 # 1ro7A.174.114 read from T0287.t06.many.frag # found chain 1ro7A in training set T0287 174 :YNDYVRDLL 1ro7A 115 :FNAYFKFHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30593 # 1x38A.174.11 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 174 :YNDYVRDLL 1x38A 12 :VEDRVADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30594 # 1jl0A.174.263 read from T0287.t06.many.frag # found chain 1jl0A in training set T0287 174 :YNDYVRDLL 1jl0A 264 :YDDLIRKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30595 # 1f5qB.175.232 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 175 :NDYVRDLLM 1f5qB 233 :CDLVDIAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30596 # 1ifqA.175.44 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 175 :NDYVRDLLM 1ifqA 34 :QSQAKQLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30597 # 1b3tA.175.115 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 175 :NDYVRDLLM 1b3tA 576 :KDAIKDLVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30598 # 1xqwA.175.281 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 175 :NDYVRDLLM 1xqwA 282 :NKLLSDFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30599 # 2gmfA.175.106 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 175 :NDYVRDLLM 2gmfA 107 :KENLKDFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30600 # 1qwtA.175.236 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 175 :NDYVRDLLM 1qwtA 409 :KAYLQDLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30601 # 1z77A.175.128 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 175 :NDYVRDLLM 1z77A 129 :FDFVREKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30602 # 1jl1A.175.133 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 175 :NDYVRDLLM 1jl1A 134 :DELARAAAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30603 # 1vjuA.175.153 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 175 :NDYVRDLLM 1vjuA 154 :HQVAQDLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30604 # 1nznA.175.93 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 175 :NDYVRDLLM 1nznA 94 :LKYVRGLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30605 # 1wzdA.175.172 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 175 :NDYVRDLLM 1wzdA 173 :KDEYREKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30606 # 2b61A.175.366 read from T0287.t06.many.frag # found chain 2b61A in template set T0287 175 :NDYVRDLLM 2b61A 348 :EKRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30607 # 1lvaA.175.204 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 175 :NDYVRDLLM 1lvaA 581 :REVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30608 # 1wouA.175.49 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 175 :NDYVRDLLM 1wouA 50 :EPVVREGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30609 # 1x38A.175.12 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 175 :NDYVRDLLM 1x38A 13 :EDRVADLLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30610 # 1auoA.175.87 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 175 :NDYVRDLLM 1auoA 88 :AKMVTDLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30611 # 1w9cA.175.305 read from T0287.t06.many.frag # found chain 1w9cA in template set T0287 175 :NDYVRDLLM 1w9cA 1012 :KEHLRDFLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30612 # 1l5aA.175.298 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 175 :NDYVRDLLM 1l5aA 299 :GQAIRSLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30613 # 1l5oA.175.213 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 175 :NDYVRDLLM 1l5oA 214 :VDVVRRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30614 # 2f1rA.175.152 read from T0287.t06.many.frag # found chain 2f1rA in template set T0287 175 :NDYVRDLLM 2f1rA 153 :AEFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30615 # 1izmA.175.157 read from T0287.t06.many.frag # found chain 1izmA in template set T0287 175 :NDYVRDLLM 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30616 # 1xrjA.175.221 read from T0287.t06.many.frag # found chain 1xrjA in template set Warning: unaligning (T0287)M183 because last residue in template chain is (1xrjA)N230 T0287 175 :NDYVRDLL 1xrjA 222 :VQHIQDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30617 # 1tqhA.175.234 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 175 :NDYVRDLLM 1tqhA 235 :HEDIYAFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30618 # 2d0tA.175.306 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 175 :NDY 2d0tA 304 :RNF T0287 180 :DLLM 2d0tA 309 :SLES Number of specific fragments extracted= 2 number of extra gaps= 1 total=30620 # 1tr9A.175.318 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 175 :NDYVRDLLM 1tr9A 318 :SANMQRLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30621 # 1i60A.175.264 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 175 :NDYVRDLLM 1i60A 265 :KKTTVDVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30622 # 1uddA.175.113 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 175 :NDYVRDLLM 1uddA 114 :MDFMLATAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30623 # 1o6dA.175.83 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 175 :NDYVRDLLM 1o6dA 82 :ADFLKDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30624 # 1llfA.175.358 read from T0287.t06.many.frag # found chain 1llfA in training set T0287 175 :NDYVRDLLM 1llfA 359 :RAYFKQSFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30625 # 1qw9A.175.264 read from T0287.t06.many.frag # found chain 1qw9A in training set T0287 175 :NDYVRDLLM 1qw9A 265 :DDFIRSVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30626 # 1ifqA.176.45 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 176 :DYVRDLLMK 1ifqA 35 :SQAKQLFRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30627 # 1f5qB.176.233 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 176 :DYVRDLLMK 1f5qB 234 :DLVDIAIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30628 # 1b3tA.176.116 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 176 :DYVRDLLMK 1b3tA 577 :DAIKDLVMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30629 # 2gmfA.176.107 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 176 :DYVRDLLMK 2gmfA 108 :ENLKDFLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30630 # 1x38A.176.13 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 176 :DYVRDLLMK 1x38A 14 :DRVADLLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30631 # 1nznA.176.94 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 176 :DYVRDLLMK 1nznA 95 :KYVRGLLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30632 # 1wzdA.176.173 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 176 :DYVRDLLMK 1wzdA 174 :DEYREKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30633 # 1xqwA.176.282 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 176 :DYVRDLLMK 1xqwA 283 :KLLSDFILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30634 # 1qwtA.176.237 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 176 :DYVRDLLMK 1qwtA 410 :AYLQDLVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30635 # 1jl1A.176.134 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 176 :DYVRDLLMK 1jl1A 135 :ELARAAAMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30636 # 1z77A.176.129 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 176 :DYVRDLLMK 1z77A 130 :DFVREKLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30637 # 1vjuA.176.154 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 176 :DYVRDLLMK 1vjuA 155 :QVAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30638 # 2b61A.176.367 read from T0287.t06.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 2b61A 349 :KRIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30639 # 1lvaA.176.205 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 176 :DYVRDLLMK 1lvaA 582 :EVIKNLAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=30640 # 1wouA.176.50 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 176 :DYVRDLLMK 1wouA 51 :PVVREGLKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30641 # 1tr9A.176.319 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 176 :DYVRDLLMK 1tr9A 319 :ANMQRLIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30642 # 1l5aA.176.299 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 176 :DYVRDLLMK 1l5aA 300 :QAIRSLYLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30643 # 1o6dA.176.84 read from T0287.t06.many.frag # found chain 1o6dA in training set T0287 176 :DYVRDLLMK 1o6dA 83 :DFLKDLEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30644 # 2d0tA.176.307 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 Warning: unaligning (T0287)K184 (2d0tA)N313 because P (beta_P) conformation "forbidden" or filtered. T0287 176 :DY 2d0tA 305 :NF T0287 180 :DLLM 2d0tA 309 :SLES Number of specific fragments extracted= 2 number of extra gaps= 2 total=30646 # 1w9cA.176.306 read from T0287.t06.many.frag # found chain 1w9cA in template set Warning: unaligning (T0287)K184 (1w9cA)Q1021 because G (3-10) conformation "forbidden" or filtered. T0287 176 :DYVRDLLM 1w9cA 1013 :EHLRDFLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30647 # 1uddA.176.114 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 176 :DYVRDLLMK 1uddA 115 :DFMLATAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30648 # 1tqhA.176.235 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 176 :DYVRDLLMK 1tqhA 236 :EDIYAFLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=30649 # 1i60A.176.265 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 176 :DYVRDLLMK 1i60A 266 :KTTVDVVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30650 # 1auoA.176.88 read from T0287.t06.many.frag # found chain 1auoA in training set T0287 176 :DYVRDLLMK 1auoA 89 :KMVTDLIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30651 # 1l5oA.176.214 read from T0287.t06.many.frag # found chain 1l5oA in training set T0287 176 :DYVRDLLMK 1l5oA 215 :DVVRRAIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30652 # 2f1rA.176.153 read from T0287.t06.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 176 :DYVRDLLM 2f1rA 154 :EFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30653 # 1llfA.176.359 read from T0287.t06.many.frag # found chain 1llfA in training set T0287 176 :DYVRDLLMK 1llfA 360 :AYFKQSFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30654 # 2arhA.176.171 read from T0287.t06.many.frag # found chain 2arhA in template set T0287 176 :DYVRDLLMK 2arhA 170 :KEFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30655 # 1ursA.176.216 read from T0287.t06.many.frag # found chain 1ursA in training set T0287 176 :DYVRDLLMK 1ursA 217 :TLMRDMVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30656 # 1yjsA.176.377 read from T0287.t06.many.frag # found chain 1yjsA in template set T0287 176 :DYVRDLLMK 1yjsA 378 :AIIGLVLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30657 # 1ifqA.177.46 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 177 :YVRDLLMKF 1ifqA 36 :QAKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30658 # 1f5qB.177.234 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 177 :YVRDLLMKF 1f5qB 235 :LVDIAIVSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30659 # 1b3tA.177.117 read from T0287.t06.many.frag # found chain 1b3tA in template set T0287 177 :YVRDLLMKF 1b3tA 578 :AIKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30660 # 1wzdA.177.174 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 177 :YVRDLLMKF 1wzdA 175 :EYREKLNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30661 # 2gmfA.177.108 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 177 :YVRDLLMKF 2gmfA 109 :NLKDFLLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30662 # 1xqwA.177.283 read from T0287.t06.many.frag # found chain 1xqwA in template set T0287 177 :YVRDLLMKF 1xqwA 284 :LLSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30663 # 1x38A.177.14 read from T0287.t06.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)K184 (1x38A)R22 because G (3-10) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1x38A 15 :RVADLLG T0287 185 :F 1x38A 23 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=30665 # 1qwtA.177.238 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 177 :YVRDLLMKF 1qwtA 411 :YLQDLVEGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30666 # 1vjuA.177.155 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 177 :YVRDLLMKF 1vjuA 156 :VAQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30667 # 1z77A.177.130 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 177 :YVRDLLMKF 1z77A 131 :FVREKLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30668 # 1jl1A.177.135 read from T0287.t06.many.frag # found chain 1jl1A in training set Warning: unaligning (T0287)K184 (1jl1A)N143 because D (zeta) conformation "forbidden" or filtered. T0287 177 :YVRDLLM 1jl1A 136 :LARAAAM T0287 185 :F 1jl1A 144 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=30670 # 2b61A.177.368 read from T0287.t06.many.frag # found chain 2b61A in template set Warning: unaligning (T0287)K184 (2b61A)G357 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because last residue in template chain is (2b61A)N358 T0287 177 :YVRDLLM 2b61A 350 :RIRDGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30671 # 1tqhA.177.236 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 177 :YVRDLLMKF 1tqhA 237 :DIYAFLESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30672 # 1n69A.177.58 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 177 :YVRDLLMKF 1n69A 57 :IAIQMMMHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30673 # 1nznA.177.95 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 177 :YVRDLLMKF 1nznA 96 :YVRGLLQTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30674 # 1lvaA.177.206 read from T0287.t06.many.frag # found chain 1lvaA in template set T0287 177 :YVRDLLMKF 1lvaA 583 :VIKNLASTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30675 # 1tr9A.177.320 read from T0287.t06.many.frag # found chain 1tr9A in training set T0287 177 :YVRDLLMKF 1tr9A 320 :NMQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30676 # 1wouA.177.51 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 177 :YVRDLLMKF 1wouA 52 :VVREGLKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30677 # 2b6cA.177.192 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 177 :YVRDLLMKF 2b6cA 190 :WVEELMKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30678 # 1q7eA.177.312 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 177 :YVRDLLMKF 1q7eA 313 :EIEKYTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30679 # 1llfA.177.360 read from T0287.t06.many.frag # found chain 1llfA in training set T0287 177 :YVRDLLMKF 1llfA 361 :YFKQSFIHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30680 # 1yjsA.177.378 read from T0287.t06.many.frag # found chain 1yjsA in template set T0287 177 :YVRDLLMKF 1yjsA 379 :IIGLVLKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30681 # 2arhA.177.172 read from T0287.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 T0287 177 :YVRDLLMK 2arhA 171 :EFEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30682 # 1uddA.177.115 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 177 :YVRDLLMKF 1uddA 116 :FMLATAYKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30683 # 1uteA.177.167 read from T0287.t06.many.frag # found chain 1uteA in training set T0287 177 :YVRDLLMKF 1uteA 168 :WIKKQLAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30684 # 2d0tA.177.308 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 177 :Y 2d0tA 306 :F T0287 180 :DLLMKF 2d0tA 309 :SLESNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30686 # 1i60A.177.266 read from T0287.t06.many.frag # found chain 1i60A in training set T0287 177 :YVRDLLMKF 1i60A 267 :TTVDVVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30687 # 1ursA.177.217 read from T0287.t06.many.frag # found chain 1ursA in training set T0287 177 :YVRDLLMKF 1ursA 218 :LMRDMVSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30688 # 1colA.177.80 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 T0287 177 :YV 1colA 81 :AL T0287 181 :LLMK 1colA 85 :AWKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=30690 # 2f1rA.177.154 read from T0287.t06.many.frag # found chain 2f1rA in template set Warning: unaligning (T0287)K184 because last residue in template chain is (2f1rA)E162 T0287 177 :YVRDLLM 2f1rA 155 :FILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30691 # 1f5qB.178.235 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 178 :VRDLLMKFD 1f5qB 236 :VDIAIVSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30692 # 1ifqA.178.47 read from T0287.t06.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1ifqA 37 :AKQLFRKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30693 # 1x38A.178.15 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 178 :VRDLLMKFD 1x38A 16 :VADLLGRMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30694 # 1wzdA.178.175 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 178 :VRDLLMKFD 1wzdA 176 :YREKLNNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30695 # 1n69A.178.59 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 178 :VRDLLMKFD 1n69A 58 :AIQMMMHMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30696 # 1b3tA.178.118 read from T0287.t06.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)D186 (1b3tA)P587 because P (beta_P) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1b3tA 579 :IKDLVMTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30697 # 2gmfA.178.109 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 178 :VRDLLMKFD 2gmfA 110 :LKDFLLVIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30698 # 1nznA.178.96 read from T0287.t06.many.frag # found chain 1nznA in template set T0287 178 :VRDLLMKFD 1nznA 97 :VRGLLQTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30699 # 2b6cA.178.193 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 178 :VRDLLMKFD 2b6cA 191 :VEELMKELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30700 # 1qwtA.178.239 read from T0287.t06.many.frag # found chain 1qwtA in template set T0287 178 :VRDLLMKFD 1qwtA 412 :LQDLVEGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30701 # 1z77A.178.131 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 178 :VRDLLMKFD 1z77A 132 :VREKLKDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30702 # 1jl1A.178.136 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 178 :VRDLLMKFD 1jl1A 137 :ARAAAMNPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30703 # 2d0tA.178.309 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE in next template residue (2d0tA)C308 Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 180 :DLLMKFD 2d0tA 309 :SLESNPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30704 # 1orc.178.6 read from T0287.t06.many.frag # found chain 1orc in training set T0287 178 :VRDLLMKFD 1orc 7 :LKDYAMRFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30705 # 1vjuA.178.156 read from T0287.t06.many.frag # found chain 1vjuA in training set T0287 178 :VRDLLMKFD 1vjuA 157 :AQDLCKPFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30706 # 1tr9A.178.321 read from T0287.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 178 :VRDLLMKF 1tr9A 321 :MQRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30707 # 1tqhA.178.237 read from T0287.t06.many.frag # found chain 1tqhA in training set T0287 178 :VRDLLMKFD 1tqhA 238 :IYAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30708 # 1yjsA.178.379 read from T0287.t06.many.frag # found chain 1yjsA in template set T0287 178 :VRDLLMKFD 1yjsA 380 :IGLVLKNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30709 # 1colA.178.81 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)K184 (1colA)H88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 178 :V 1colA 82 :L T0287 181 :LLM 1colA 85 :AWK Number of specific fragments extracted= 2 number of extra gaps= 2 total=30711 # 1xqwA.178.284 read from T0287.t06.many.frag # found chain 1xqwA in template set Warning: unaligning (T0287)D186 because last residue in template chain is (1xqwA)L293 T0287 178 :VRDLLMKF 1xqwA 285 :LSDFILKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30712 # 1uddA.178.116 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 178 :VRDLLMKFD 1uddA 117 :MLATAYKGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30713 # 2arhA.178.173 read from T0287.t06.many.frag # found chain 2arhA in template set Warning: unaligning (T0287)F185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arhA)E180 Warning: unaligning (T0287)D186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arhA)E180 T0287 178 :VRDLLMK 2arhA 172 :FEEFIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30714 # 1yvrA.178.268 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 178 :VRDLLMKFD 1yvrA 269 :WKSLLQDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30715 # 1q7eA.178.313 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 178 :VRDLLMKFD 1q7eA 314 :IEKYTVTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=30716 # 1vpjA.178.102 read from T0287.t06.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)V178 because of BadResidue code BAD_PEPTIDE at template residue (1vpjA)T91 T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30717 # 1j9lA.178.142 read from T0287.t06.many.frag # found chain 1j9lA in template set T0287 178 :VRDLLMKFD 1j9lA 143 :LIDFLKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30718 # 1bm8.178.79 read from T0287.t06.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1bm8 83 :AKQLAEKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30719 # 1fo8A.178.90 read from T0287.t06.many.frag # found chain 1fo8A in training set Warning: unaligning (T0287)D186 (1fo8A)N203 because L (left) conformation "forbidden" or filtered. T0287 178 :VRDLLMKF 1fo8A 195 :LGQIFHNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30720 # 1wouA.178.52 read from T0287.t06.many.frag # found chain 1wouA in training set T0287 178 :VRDLLMKFD 1wouA 53 :VREGLKHIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30721 # 1ursA.178.218 read from T0287.t06.many.frag # found chain 1ursA in training set T0287 178 :VRDLLMKFD 1ursA 219 :MRDMVSKYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30722 # 1n69A.179.60 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 179 :RDLLMKFDL 1n69A 59 :IQMMMHMQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30723 # 1f5qB.179.236 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 179 :RDLLMKFDL 1f5qB 237 :DIAIVSFDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30724 # 2b6cA.179.194 read from T0287.t06.many.frag # found chain 2b6cA in template set T0287 179 :RDLLMKFDL 2b6cA 192 :EELMKELVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30725 # 1x38A.179.16 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 179 :RDLLMKFDL 1x38A 17 :ADLLGRMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30726 # 1orc.179.7 read from T0287.t06.many.frag # found chain 1orc in training set T0287 179 :RDLLMKFDL 1orc 8 :KDYAMRFGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30727 # 1wzdA.179.176 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 179 :RDLLMKFDL 1wzdA 177 :REKLNNLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30728 # 1uddA.179.117 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 179 :RDLLMKFDL 1uddA 118 :LATAYKGNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30729 # 1ifqA.179.48 read from T0287.t06.many.frag # found chain 1ifqA in template set Warning: unaligning (T0287)D186 (1ifqA)N45 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ifqA 38 :KQLFRKL T0287 187 :L 1ifqA 46 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=30731 # 1b3tA.179.119 read from T0287.t06.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)K184 (1b3tA)T585 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 1b3tA 580 :KDLVM T0287 185 :FDL 1b3tA 586 :KPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30733 # 1ucdA.179.105 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 179 :RDLLMKFDL 1ucdA 106 :VDMRNNYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30734 # 1colA.179.82 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)N84 Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)K184 (1colA)H88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLM 1colA 85 :AWK T0287 187 :L 1colA 91 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=30736 # 1yvrA.179.269 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 179 :RDLLMKFDL 1yvrA 270 :KSLLQDMPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30737 # 1j9lA.179.143 read from T0287.t06.many.frag # found chain 1j9lA in template set T0287 179 :RDLLMKFDL 1j9lA 144 :IDFLKEFDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30738 # 1bm8.179.80 read from T0287.t06.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1bm8 84 :KQLAEKF T0287 187 :L 1bm8 92 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30740 # 2gmfA.179.110 read from T0287.t06.many.frag # found chain 2gmfA in template set Warning: unaligning (T0287)K184 (2gmfA)V116 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLLM 2gmfA 111 :KDFLL T0287 185 :FDL 2gmfA 117 :IPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30742 # 1zbxB.179.46 read from T0287.t06.many.frag # found chain 1zbxB in template set T0287 179 :RDLLMKFDL 1zbxB 526 :RAMIDQMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30743 # 1wkcA.179.10 read from T0287.t06.many.frag # found chain 1wkcA in training set T0287 179 :RDLLMKFDL 1wkcA 11 :RAAWRRLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30744 # 1ursA.179.219 read from T0287.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ursA 220 :RDMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=30746 # 1ty9A.179.132 read from T0287.t06.many.frag # found chain 1ty9A in training set Warning: unaligning (T0287)D186 (1ty9A)P140 because P (beta_P) conformation "forbidden" or filtered. T0287 179 :RDLLMKF 1ty9A 133 :DDAWLKR T0287 187 :L 1ty9A 141 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=30748 # 1z77A.179.132 read from T0287.t06.many.frag # found chain 1z77A in template set T0287 179 :RDLLMKFDL 1z77A 133 :REKLKDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30749 # 1q7eA.179.314 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 179 :RDLLMKFDL 1q7eA 315 :EKYTVTIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30750 # 1jl1A.179.137 read from T0287.t06.many.frag # found chain 1jl1A in training set T0287 179 :RDLLMKFDL 1jl1A 138 :RAAAMNPTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30751 # 1tqhA.179.238 read from T0287.t06.many.frag # found chain 1tqhA in training set Warning: unaligning (T0287)L187 because last residue in template chain is (1tqhA)W247 T0287 179 :RDLLMKFD 1tqhA 239 :YAFLESLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30752 # 1wusA.179.110 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 179 :RDLLMK 1wusA 186 :RLALMQ T0287 186 :DL 1wusA 193 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30754 # 1vpjA.179.103 read from T0287.t06.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKFD 1vpjA 92 :PKILEKVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30755 # 1tr9A.179.322 read from T0287.t06.many.frag # found chain 1tr9A in training set Warning: unaligning (T0287)D186 because last residue in template chain is (1tr9A)S329 T0287 179 :RDLLMKF 1tr9A 322 :QRLIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30756 # 2d0tA.179.310 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)R179 because of BadResidue code BAD_PEPTIDE at template residue (2d0tA)C308 T0287 180 :DLLMKFDL 2d0tA 309 :SLESNPSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30757 # 2lisA.179.89 read from T0287.t06.many.frag # found chain 2lisA in training set T0287 179 :RDLLMKFDL 2lisA 90 :AEIGRRIDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30758 # 1t71A.179.141 read from T0287.t06.many.frag # found chain 1t71A in template set Warning: unaligning (T0287)L187 (1t71A)C150 because Y (epsilon') conformation "forbidden" or filtered. T0287 179 :RDLLMKFD 1t71A 142 :KELILKRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30759 # 1yjsA.179.380 read from T0287.t06.many.frag # found chain 1yjsA in template set Warning: unaligning (T0287)M183 (1yjsA)K385 because G (3-10) conformation "forbidden" or filtered. T0287 179 :RDLL 1yjsA 381 :GLVL T0287 184 :KFDL 1yjsA 386 :NVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30761 # 1n69A.180.61 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 180 :DLLMKFDLE 1n69A 60 :QMMMHMQPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30762 # 1orc.180.8 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1orc 9 :DYAMRF T0287 187 :LE 1orc 16 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30764 # 1ucdA.180.106 read from T0287.t06.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 180 :DLLM 1ucdA 107 :DMRN T0287 185 :FDLE 1ucdA 112 :YDII Number of specific fragments extracted= 2 number of extra gaps= 1 total=30766 # 1colA.180.83 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)D180 because of BadResidue code BAD_PEPTIDE at template residue (1colA)N84 Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LE 1colA 91 :AQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=30768 # 2b6cA.180.195 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)E188 (2b6cA)S201 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 2b6cA 193 :ELMKELVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30769 # 1x38A.180.17 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 180 :DLLMKFDLE 1x38A 18 :DLLGRMTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30770 # 1uddA.180.118 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 180 :DLLMKFDLE 1uddA 119 :ATAYKGNII Number of specific fragments extracted= 1 number of extra gaps= 0 total=30771 # 1f5qB.180.237 read from T0287.t06.many.frag # found chain 1f5qB in template set T0287 180 :DLLMKFDLE 1f5qB 238 :IAIVSFDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30772 # 1q7eA.180.315 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 180 :DLLMKFDLE 1q7eA 316 :KYTVTIDKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30773 # 1j9lA.180.144 read from T0287.t06.many.frag # found chain 1j9lA in template set T0287 180 :DLLMKFDLE 1j9lA 145 :DFLKEFDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30774 # 1zbxB.180.47 read from T0287.t06.many.frag # found chain 1zbxB in template set T0287 180 :DLLMKFDLE 1zbxB 527 :AMIDQMNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30775 # 1wzdA.180.177 read from T0287.t06.many.frag # found chain 1wzdA in template set Warning: unaligning (T0287)E188 (1wzdA)S186 because P (beta_P) conformation "forbidden" or filtered. T0287 180 :DLLMKFDL 1wzdA 178 :EKLNNLEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30776 # 1wusA.180.111 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 180 :DLLMK 1wusA 187 :LALMQ T0287 186 :DLE 1wusA 193 :KLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30778 # 1yvrA.180.270 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 180 :DLLMKFDLE 1yvrA 271 :SLLQDMPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30779 # 1zi8A.180.85 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 180 :DLLMKFDLE 1zi8A 86 :KLWQAFDME Number of specific fragments extracted= 1 number of extra gaps= 0 total=30780 # 1wkcA.180.11 read from T0287.t06.many.frag # found chain 1wkcA in training set T0287 180 :DLLMKFDLE 1wkcA 12 :AAWRRLDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30781 # 1ty9A.180.133 read from T0287.t06.many.frag # found chain 1ty9A in training set T0287 180 :DLLMKFDLE 1ty9A 134 :DAWLKRPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30782 # 1bm8.180.81 read from T0287.t06.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1bm8 85 :QLAEKF T0287 187 :LE 1bm8 92 :VY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30784 # 1ifqA.180.49 read from T0287.t06.many.frag # found chain 1ifqA in template set T0287 180 :DLLMKFDLE 1ifqA 39 :QLFRKLNEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30785 # 1mzgA.180.94 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 180 :DLLMKFDLE 1mzgA 95 :QDIVNFDVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30786 # 1b3tA.180.120 read from T0287.t06.many.frag # found chain 1b3tA in template set Warning: unaligning (T0287)D186 (1b3tA)P587 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1b3tA)P589 because C (cis) conformation "forbidden" or filtered. T0287 180 :DLLMKF 1b3tA 581 :DLVMTK T0287 187 :L 1b3tA 588 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=30788 # 1ursA.180.220 read from T0287.t06.many.frag # found chain 1ursA in training set Warning: unaligning (T0287)D186 (1ursA)H227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)E188 (1ursA)M229 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKF 1ursA 221 :DMVSKY T0287 187 :L 1ursA 228 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=30790 # 1j5sA.180.140 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 180 :DL 1j5sA 129 :KK T0287 184 :KF 1j5sA 133 :EM T0287 187 :LE 1j5sA 136 :PQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=30793 # 2lisA.180.90 read from T0287.t06.many.frag # found chain 2lisA in training set T0287 180 :DLLMKFDLE 2lisA 91 :EIGRRIDMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30794 # 1t77A.180.128 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 180 :DLLMKFDLE 1t77A 2204 :QLFKASNMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30795 # 1vpjA.180.104 read from T0287.t06.many.frag # found chain 1vpjA in training set Warning: unaligning (T0287)L187 (1vpjA)C100 because Y (epsilon') conformation "forbidden" or filtered. T0287 180 :DLLMKFD 1vpjA 93 :KILEKVE T0287 188 :E 1vpjA 101 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=30797 # 1rkxA.180.334 read from T0287.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 180 :DLLM 1rkxA 335 :NWLS T0287 185 :FDLE 1rkxA 340 :TDMH Number of specific fragments extracted= 2 number of extra gaps= 1 total=30799 # 1pyaB.180.200 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 180 :DLLMKFDLE 1pyaB 283 :EIMENLTMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30800 # 1yo3A.180.39 read from T0287.t06.many.frag # found chain 1yo3A in training set T0287 180 :DLLMKFDLE 1yo3A 21 :QALQKYNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30801 # 2gmfA.180.111 read from T0287.t06.many.frag # found chain 2gmfA in template set T0287 180 :DLLMKFDLE 2gmfA 112 :DFLLVIPFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30802 # 1n69A.181.62 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 181 :LLMKFDLEK 1n69A 61 :MMMHMQPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30803 # 1ucdA.181.107 read from T0287.t06.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 181 :LLM 1ucdA 108 :MRN T0287 185 :FDLEK 1ucdA 112 :YDIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30805 # 1orc.181.9 read from T0287.t06.many.frag # found chain 1orc in training set T0287 181 :LLMKFDLEK 1orc 10 :YAMRFGQTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30806 # 1colA.181.84 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 181 :LLMK 1colA 85 :AWKH T0287 187 :LEK 1colA 91 :AQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30808 # 1q7eA.181.316 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 181 :LLMKFDLEK 1q7eA 317 :YTVTIDKHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30809 # 1x38A.181.18 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 181 :LLMKFDLEK 1x38A 19 :LLGRMTLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30810 # 2b6cA.181.196 read from T0287.t06.many.frag # found chain 2b6cA in template set Warning: unaligning (T0287)E188 (2b6cA)S201 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKFDL 2b6cA 194 :LMKELVL T0287 189 :K 2b6cA 202 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=30812 # 1wusA.181.112 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1wusA 188 :ALMQ T0287 186 :DLEK 1wusA 193 :KLSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30814 # 1zi8A.181.86 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 181 :LLMKFDLEK 1zi8A 87 :LWQAFDMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30815 # 1uddA.181.119 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 181 :LLMKFDLEK 1uddA 120 :TAYKGNIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30816 # 1mzgA.181.95 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 181 :LLMKFDLEK 1mzgA 96 :DIVNFDVRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30817 # 1j9lA.181.145 read from T0287.t06.many.frag # found chain 1j9lA in template set Warning: unaligning (T0287)K189 (1j9lA)L154 because G (3-10) conformation "forbidden" or filtered. T0287 181 :LLMKFDLE 1j9lA 146 :FLKEFDFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30818 # 1yvrA.181.271 read from T0287.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLMKF 1yvrA 272 :LLQDM T0287 187 :LEK 1yvrA 278 :LTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30820 # 1wkcA.181.12 read from T0287.t06.many.frag # found chain 1wkcA in training set T0287 181 :LLMKFDLEK 1wkcA 13 :AWRRLDLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30821 # 1pyaB.181.201 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 181 :LLMKFDLEK 1pyaB 284 :IMENLTMPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30822 # 2b8nA.181.393 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 2b8nA 382 :YLKN T0287 186 :DLEK 2b8nA 387 :DSYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30824 # 1zbxB.181.48 read from T0287.t06.many.frag # found chain 1zbxB in template set T0287 181 :LLMKFDLEK 1zbxB 528 :MIDQMNLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30825 # 1bm8.181.82 read from T0287.t06.many.frag # found chain 1bm8 in training set Warning: unaligning (T0287)D186 (1bm8)S91 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMKF 1bm8 86 :LAEKF T0287 187 :LEK 1bm8 92 :VYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30827 # 1fs1A.181.19 read from T0287.t06.many.frag # found chain 1fs1A in training set T0287 181 :LLMKFDLEK 1fs1A 120 :IFSCLCLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30828 # 1rz4A.181.107 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 181 :LLMK 1rz4A 108 :LLET T0287 186 :DLEK 1rz4A 113 :HFQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30830 # 2d0tA.181.312 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 181 :LLMKFDLEK 2d0tA 310 :LESNPSVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30831 # 1rkxA.181.335 read from T0287.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 181 :LLM 1rkxA 336 :WLS T0287 185 :FDLEK 1rkxA 340 :TDMHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30833 # 2c1lA.181.146 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (2c1lA)S152 because E (beta_S) conformation "forbidden" or filtered. T0287 181 :LLM 2c1lA 147 :QSM T0287 185 :F 2c1lA 151 :F T0287 187 :LEK 2c1lA 153 :WND Number of specific fragments extracted= 3 number of extra gaps= 2 total=30836 # 1t77A.181.129 read from T0287.t06.many.frag # found chain 1t77A in template set T0287 181 :LLMKFDLEK 1t77A 2205 :LFKASNMTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30837 # 1r5yA.181.363 read from T0287.t06.many.frag # found chain 1r5yA in training set T0287 181 :LLMKFDLEK 1r5yA 364 :SISEGRFSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30838 # 1j5sA.181.141 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 181 :L 1j5sA 130 :K T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEK 1j5sA 136 :PQK Number of specific fragments extracted= 3 number of extra gaps= 2 total=30841 # 1ty9A.181.134 read from T0287.t06.many.frag # found chain 1ty9A in training set T0287 181 :LLMKFDLEK 1ty9A 135 :AWLKRPYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30842 # 1wzdA.181.178 read from T0287.t06.many.frag # found chain 1wzdA in template set T0287 181 :LLMKFDLEK 1wzdA 179 :KLNNLELSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30843 # 1vk9A.181.130 read from T0287.t06.many.frag # found chain 1vk9A in template set Warning: unaligning (T0287)K184 (1vk9A)M122 because P (beta_P) conformation "forbidden" or filtered. T0287 181 :LLM 1vk9A 119 :VLE T0287 185 :FDLEK 1vk9A 123 :DDPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30845 # 1yo3A.181.40 read from T0287.t06.many.frag # found chain 1yo3A in training set T0287 181 :LLMKFDLEK 1yo3A 22 :ALQKYNVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30846 # 1n69A.182.63 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)D186 (1n69A)Q66 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1n69A 62 :MMHM T0287 187 :LEKY 1n69A 67 :PKEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30848 # 1ucdA.182.108 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 182 :LMKFDLEKY 1ucdA 109 :RNNYDIIGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30849 # 1orc.182.10 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 182 :LMKF 1orc 11 :AMRF T0287 187 :LEKY 1orc 16 :QTKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30851 # 1colA.182.85 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 182 :LMK 1colA 86 :WKH T0287 187 :LEKY 1colA 91 :AQDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30853 # 1q7eA.182.317 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 182 :LMKFDLEKY 1q7eA 318 :TVTIDKHEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30854 # 1wusA.182.113 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 1wusA 189 :LMQ T0287 186 :DLEKY 1wusA 193 :KLSEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30856 # 1j2rA.182.117 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 182 :LMKFDLEKY 1j2rA 118 :FYGTDLELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30857 # 2c1lA.182.147 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)D186 (2c1lA)S152 because E (beta_S) conformation "forbidden" or filtered. T0287 182 :LMKF 2c1lA 148 :SMGF T0287 187 :LEKY 2c1lA 153 :WNDM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30859 # 1zi8A.182.87 read from T0287.t06.many.frag # found chain 1zi8A in template set Warning: unaligning (T0287)K184 (1zi8A)A90 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LM 1zi8A 88 :WQ T0287 185 :FDLEKY 1zi8A 91 :FDMEAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30861 # 1mzgA.182.96 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 182 :LMKFDLEKY 1mzgA 97 :IVNFDVRPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30862 # 1pyaB.182.202 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 182 :LMKFDLEKY 1pyaB 285 :MENLTMPEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30863 # 1x38A.182.19 read from T0287.t06.many.frag # found chain 1x38A in template set Warning: unaligning (T0287)D186 (1x38A)T24 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LMKF 1x38A 20 :LGRM T0287 187 :LEKY 1x38A 25 :LAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30865 # 2b8nA.182.394 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 182 :LMK 2b8nA 383 :LKN T0287 186 :DLEKY 2b8nA 387 :DSYNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30867 # 1rz4A.182.108 read from T0287.t06.many.frag # found chain 1rz4A in template set T0287 182 :LMKFDLEKY 1rz4A 109 :LETCHFQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30868 # 2d0tA.182.313 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 182 :LMKFDLEKY 2d0tA 311 :ESNPSVREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30869 # 1yvrA.182.272 read from T0287.t06.many.frag # found chain 1yvrA in template set Warning: unaligning (T0287)K184 (1yvrA)D275 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1yvrA)P277 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LM 1yvrA 273 :LQ T0287 185 :F 1yvrA 276 :M T0287 187 :LEKY 1yvrA 278 :LTAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=30872 # 1xcrA.182.75 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 182 :LMKFDLEKY 1xcrA 75 :KKVYDLNKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30873 # 1rkxA.182.336 read from T0287.t06.many.frag # found chain 1rkxA in template set Warning: unaligning (T0287)K184 (1rkxA)G339 because T (delta_L) conformation "forbidden" or filtered. T0287 182 :LM 1rkxA 337 :LS T0287 185 :FDLEKY 1rkxA 340 :TDMHEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30875 # 1qouA.182.146 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1qouA)N150 because D (zeta) conformation "forbidden" or filtered. T0287 182 :LM 1qouA 146 :RD T0287 185 :F 1qouA 149 :F T0287 187 :LEKY 1qouA 151 :TRKF Number of specific fragments extracted= 3 number of extra gaps= 2 total=30878 # 1uddA.182.120 read from T0287.t06.many.frag # found chain 1uddA in template set T0287 182 :LMKFDLEKY 1uddA 121 :AYKGNIIEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30879 # 1wkcA.182.13 read from T0287.t06.many.frag # found chain 1wkcA in training set Warning: unaligning (T0287)K184 (1wkcA)R16 because G (3-10) conformation "forbidden" or filtered. T0287 182 :LM 1wkcA 14 :WR T0287 185 :FDLEKY 1wkcA 17 :LDLKAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30881 # 1ujpA.182.236 read from T0287.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ujpA)S241 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LM 1ujpA 237 :EE T0287 185 :F 1ujpA 240 :R T0287 187 :LEKY 1ujpA 242 :LAPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=30884 # 1j5sA.182.142 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)L182 because of BadResidue code BAD_PEPTIDE in next template residue (1j5sA)P132 Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEKY 1j5sA 136 :PQKL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30886 # 1sa3A.182.127 read from T0287.t06.many.frag # found chain 1sa3A in template set T0287 182 :LMKFDLEKY 1sa3A 128 :IAEYDVETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30887 # 1r5yA.182.364 read from T0287.t06.many.frag # found chain 1r5yA in training set T0287 182 :LMKFDLEKY 1r5yA 365 :ISEGRFSQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30888 # 1vk9A.182.131 read from T0287.t06.many.frag # found chain 1vk9A in template set T0287 182 :LMKFDLEKY 1vk9A 120 :LEMDDPEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30889 # 1fs1A.182.20 read from T0287.t06.many.frag # found chain 1fs1A in training set T0287 182 :LMKFDLEKY 1fs1A 121 :FSCLCLPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30890 # 1fs7A.182.431 read from T0287.t06.many.frag # found chain 1fs7A in training set T0287 182 :LMKFDLEKY 1fs7A 454 :LAKVDMEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30891 # 2cwcA.182.178 read from T0287.t06.many.frag # found chain 2cwcA in template set Warning: unaligning (T0287)K184 (2cwcA)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (2cwcA)P183 because P (beta_P) conformation "forbidden" or filtered. T0287 182 :LM 2cwcA 179 :LR T0287 185 :F 2cwcA 182 :A T0287 187 :LEKY 2cwcA 184 :KEAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=30894 # 1j1jA.182.87 read from T0287.t06.many.frag # found chain 1j1jA in template set T0287 182 :LMKFDLEKY 1j1jA 76 :KTKFPAEQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30895 # 1n69A.183.64 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 183 :MKFDLEKYM 1n69A 63 :MHMQPKEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=30896 # 1orc.183.11 read from T0287.t06.many.frag # found chain 1orc in training set T0287 183 :MKFDLEKYM 1orc 12 :MRFGQTKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30897 # 1ucdA.183.109 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 183 :MKFDLEKYM 1ucdA 110 :NNYDIIGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30898 # 1qouA.183.147 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1qouA)N150 because D (zeta) conformation "forbidden" or filtered. T0287 183 :M 1qouA 147 :D T0287 185 :F 1qouA 149 :F T0287 187 :LEKYM 1qouA 151 :TRKFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=30901 # 1colA.183.86 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 183 :MK 1colA 87 :KH T0287 187 :LEKYM 1colA 91 :AQDMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30903 # 1oz2A.183.223 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)C423 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :MKF 1oz2A 420 :DNF T0287 187 :LEKYM 1oz2A 424 :WEKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30905 # 1j2rA.183.118 read from T0287.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K184 (1j2rA)G120 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1j2rA 119 :Y T0287 185 :FDLEKYM 1j2rA 121 :TDLELQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30907 # 1pyaB.183.203 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :MKF 1pyaB 286 :ENL T0287 187 :LEKYM 1pyaB 290 :MPEWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30909 # 2c1lA.183.148 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)K184 (2c1lA)G150 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 2c1lA 149 :M T0287 185 :FDLEKYM 2c1lA 151 :FSWNDMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30911 # 1xcrA.183.76 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 183 :MKFDLEKYM 1xcrA 76 :KVYDLNKIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30912 # 1q7eA.183.318 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 183 :MKFDLEKYM 1q7eA 319 :VTIDKHEAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30913 # 1wusA.183.114 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1wusA 190 :MQ T0287 186 :DLEKYM 1wusA 193 :KLSEYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30915 # 2b8nA.183.395 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)K184 (2b8nA)N385 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 183 :M 2b8nA 384 :K T0287 186 :DLEKYM 2b8nA 387 :DSYNAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30917 # 2d0tA.183.314 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 183 :MKFDLEKYM 2d0tA 312 :SNPSVREFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30918 # 1mzgA.183.97 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 183 :MKFDLEKYM 1mzgA 98 :VNFDVRPWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30919 # 1sa3A.183.128 read from T0287.t06.many.frag # found chain 1sa3A in template set Warning: unaligning (T0287)M183 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0287)K184 (1sa3A)E130 because E (beta_S) conformation "forbidden" or filtered. T0287 185 :FDLEKYM 1sa3A 131 :YDVETIC Number of specific fragments extracted= 1 number of extra gaps= 1 total=30920 # 1l3lA.183.186 read from T0287.t06.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)M183 (1l3lA)V187 because G (3-10) conformation "forbidden" or filtered. T0287 184 :KFDLEKYM 1l3lA 188 :GKTMEEIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30921 # 1rz4A.183.109 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 183 :MK 1rz4A 110 :ET T0287 186 :DLEKYM 1rz4A 113 :HFQAFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=30923 # 1zi8A.183.88 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 183 :MKFDLEKYM 1zi8A 89 :QAFDMEAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30924 # 1l5aA.183.308 read from T0287.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)D186 (1l5aA)R312 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :MKF 1l5aA 309 :GRY T0287 187 :LEKYM 1l5aA 313 :IEQIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30926 # 1x38A.183.20 read from T0287.t06.many.frag # found chain 1x38A in template set T0287 183 :MKFDLEKYM 1x38A 21 :GRMTLAEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30927 # 1ujpA.183.237 read from T0287.t06.many.frag # found chain 1ujpA in training set T0287 183 :MKFDLEKYM 1ujpA 238 :EGRSLAPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30928 # 1uocA.183.224 read from T0287.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 T0287 185 :FDLEKYM 1uocA 227 :YSLTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30929 # 1rkxA.183.337 read from T0287.t06.many.frag # found chain 1rkxA in template set T0287 183 :MKFDLEKYM 1rkxA 338 :SGTDMHEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30930 # 1r5yA.183.365 read from T0287.t06.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)K184 (1r5yA)E367 because G (3-10) conformation "forbidden" or filtered. T0287 183 :M 1r5yA 366 :S T0287 185 :FDLEKYM 1r5yA 368 :GRFSQFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30932 # 1yvrA.183.273 read from T0287.t06.many.frag # found chain 1yvrA in template set T0287 183 :MKFDLEKYM 1yvrA 274 :QDMPLTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30933 # 1o2dA.183.311 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K184 (1o2dA)G301 because T (delta_L) conformation "forbidden" or filtered. T0287 183 :M 1o2dA 300 :F T0287 185 :FDLEKYM 1o2dA 302 :GSLLKFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30935 # 1oz2A.183.115 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)S315 because E (beta_S) conformation "forbidden" or filtered. T0287 183 :MKF 1oz2A 312 :EEF T0287 187 :LEKYM 1oz2A 316 :WSQYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30937 # 1j5sA.183.143 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)M183 because of BadResidue code BAD_PEPTIDE at template residue (1j5sA)P132 T0287 184 :KFDLEKYM 1j5sA 133 :EMTPQKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30938 # 1vk4A.183.258 read from T0287.t06.many.frag # found chain 1vk4A in template set Warning: unaligning (T0287)K184 (1vk4A)K248 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1vk4A)S250 because P (beta_P) conformation "forbidden" or filtered. T0287 183 :M 1vk4A 247 :K T0287 185 :F 1vk4A 249 :M T0287 187 :LEKYM 1vk4A 251 :IEKAT Number of specific fragments extracted= 3 number of extra gaps= 2 total=30941 # 1n69A.184.65 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 184 :KFDLEKYMK 1n69A 64 :HMQPKEICA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30942 # 1qouA.184.148 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K184 (1qouA)G148 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1qouA 149 :FNTRKFTQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30943 # 1oz2A.184.224 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 421 :NFCWEKYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30944 # 1orc.184.12 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 184 :KF 1orc 13 :RF T0287 187 :LEKYMK 1orc 16 :QTKTAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30946 # 1j2rA.184.119 read from T0287.t06.many.frag # found chain 1j2rA in training set Warning: unaligning (T0287)K184 (1j2rA)G120 because T (delta_L) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1j2rA 121 :TDLELQLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30947 # 2c1lA.184.149 read from T0287.t06.many.frag # found chain 2c1lA in template set T0287 184 :KFDLEKYMK 2c1lA 150 :GFSWNDMIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30948 # 1pyaB.184.204 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)D186 (1pyaB)T289 because P (beta_P) conformation "forbidden" or filtered. T0287 184 :KF 1pyaB 287 :NL T0287 187 :LEKYMK 1pyaB 290 :MPEWLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30950 # 1xcrA.184.77 read from T0287.t06.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1xcrA 77 :VY T0287 187 :LEKYMK 1xcrA 80 :LNKIAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30952 # 1ucdA.184.110 read from T0287.t06.many.frag # found chain 1ucdA in training set Warning: unaligning (T0287)K184 (1ucdA)N111 because G (3-10) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1ucdA 112 :YDIIGALR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30953 # 1o2dA.184.312 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. T0287 184 :K 1o2dA 301 :G T0287 186 :DLEKYMK 1o2dA 303 :SLLKFLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30955 # 1wusA.184.115 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1wusA 191 :Q T0287 186 :DLEKYMK 1wusA 193 :KLSEYMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30957 # 2d0tA.184.315 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 184 :KFDLEKYMK 2d0tA 313 :NPSVREFVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30958 # 1colA.184.87 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 184 :K 1colA 88 :H T0287 187 :LEKYMK 1colA 91 :AQDMAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30960 # 1l5aA.184.309 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 184 :KFDLEKYMK 1l5aA 310 :RYRIEQIEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30961 # 1l3lA.184.187 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 184 :KFDLEKYMK 1l3lA 188 :GKTMEEIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30962 # 1oz2A.184.116 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 184 :KFDLEKYMK 1oz2A 313 :EFSWSQYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30963 # 2b8nA.184.396 read from T0287.t06.many.frag # found chain 2b8nA in template set Warning: unaligning (T0287)F185 (2b8nA)N386 because L (left) conformation "forbidden" or filtered. T0287 184 :K 2b8nA 385 :N T0287 186 :DLEKYMK 2b8nA 387 :DSYNALK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30965 # 1mzgA.184.98 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 184 :KFDLEKYMK 1mzgA 99 :NFDVRPWFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30966 # 1f86A.184.62 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 184 :KFDLEKYMK 1f86A 72 :EIDTKSYWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30967 # 1ywfA.184.269 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 184 :KFDLEKYMK 1ywfA 250 :YGSLGGYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30968 # 1j54A.184.141 read from T0287.t06.many.frag # found chain 1j54A in training set Warning: unaligning (T0287)K184 (1j54A)R142 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1j54A 143 :NSLDALCA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30969 # 1ujpA.184.238 read from T0287.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)K184 (1ujpA)G239 because L (left) conformation "forbidden" or filtered. T0287 185 :FDLEKYMK 1ujpA 240 :RSLAPLLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30970 # 1sa3A.184.129 read from T0287.t06.many.frag # found chain 1sa3A in template set T0287 184 :KFDLEKYMK 1sa3A 130 :EYDVETICT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30971 # 1uocA.184.225 read from T0287.t06.many.frag # found chain 1uocA in template set Warning: unaligning (T0287)K184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uocA)Q226 Warning: unaligning (T0287)F185 (1uocA)Y227 because G (3-10) conformation "forbidden" or filtered. T0287 186 :DLEKYMK 1uocA 228 :SLTTLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30972 # 1r5yA.184.366 read from T0287.t06.many.frag # found chain 1r5yA in training set Warning: unaligning (T0287)F185 (1r5yA)G368 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1r5yA 367 :E T0287 186 :DLEKYMK 1r5yA 369 :RFSQFAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30974 # 1rz4A.184.110 read from T0287.t06.many.frag # found chain 1rz4A in template set Warning: unaligning (T0287)F185 (1rz4A)C112 because L (left) conformation "forbidden" or filtered. T0287 184 :K 1rz4A 111 :T T0287 186 :DLEKYMK 1rz4A 113 :HFQAFWQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30976 # 1mtyG.184.145 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 184 :KFDLEKYMK 1mtyG 149 :DTPLEELRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30977 # 1zi8A.184.89 read from T0287.t06.many.frag # found chain 1zi8A in template set T0287 184 :KFDLEKYMK 1zi8A 90 :AFDMEAGVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30978 # 1j5sA.184.144 read from T0287.t06.many.frag # found chain 1j5sA in template set Warning: unaligning (T0287)D186 (1j5sA)T135 because E (beta_S) conformation "forbidden" or filtered. T0287 184 :KF 1j5sA 133 :EM T0287 187 :LEKYMK 1j5sA 136 :PQKLLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30980 # 1q7eA.184.319 read from T0287.t06.many.frag # found chain 1q7eA in training set T0287 184 :KFDLEKYMK 1q7eA 320 :TIDKHEAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30981 # 1oz2A.185.225 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 422 :FCWEKYLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30982 # 1qouA.185.149 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 185 :FDLEKYMKE 1qouA 149 :FNTRKFTQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30983 # 1pyaB.185.205 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 185 :FDLEKYMKE 1pyaB 288 :LTMPEWLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30984 # 1n69A.185.66 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 185 :FDLEKYMKE 1n69A 65 :MQPKEICAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30985 # 1j2rA.185.120 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 185 :FDLEKYMKE 1j2rA 121 :TDLELQLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30986 # 1orc.185.13 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)D186 (1orc)G15 because S (epsilon) conformation "forbidden" or filtered. T0287 185 :F 1orc 14 :F T0287 187 :LEKYMKE 1orc 16 :QTKTAKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30988 # 2c1lA.185.150 read from T0287.t06.many.frag # found chain 2c1lA in template set T0287 185 :FDLEKYMKE 2c1lA 151 :FSWNDMISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30989 # 1ywfA.185.270 read from T0287.t06.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)F185 (1ywfA)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1ywfA 253 :LGGYLRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30990 # 1o2dA.185.313 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)F185 (1o2dA)G302 because T (delta_L) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1o2dA 303 :SLLKFLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30991 # 1oz2A.185.117 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 185 :FDLEKYMKE 1oz2A 314 :FSWSQYLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30992 # 1l5aA.185.310 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 185 :FDLEKYMKE 1l5aA 311 :YRIEQIEQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30993 # 1xcrA.185.78 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 185 :FDLEKYMKE 1xcrA 78 :YDLNKIAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30994 # 1f86A.185.63 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 185 :FDLEKYMKE 1f86A 73 :IDTKSYWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30995 # 1wusA.185.116 read from T0287.t06.many.frag # found chain 1wusA in template set Warning: unaligning (T0287)F185 (1wusA)K192 because L (left) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1wusA 193 :KLSEYMKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30996 # 1j54A.185.142 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 185 :FDLEKYMKE 1j54A 143 :NSLDALCAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30997 # 1mtyG.185.146 read from T0287.t06.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)D186 (1mtyG)P151 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1mtyG 150 :T T0287 187 :LEKYMKE 1mtyG 152 :LEELRKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30999 # 1uocA.185.226 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 185 :FDLEKYMKE 1uocA 227 :YSLTTLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31000 # 2d0tA.185.316 read from T0287.t06.many.frag # found chain 2d0tA in template set T0287 185 :FDLEKYMKE 2d0tA 314 :PSVREFVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31001 # 1ucdA.185.111 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 185 :FDLEKYMKE 1ucdA 112 :YDIIGALRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31002 # 2c71A.185.182 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 185 :FDLEKYMKE 2c71A 658 :VTLTELFTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31003 # 1l3lA.185.188 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 185 :FDLEKYMKE 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31004 # 1wkqA.185.119 read from T0287.t06.many.frag # found chain 1wkqA in training set T0287 185 :FDLEKYMKE 1wkqA 112 :FDDSFIYKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31005 # 1sa3A.185.130 read from T0287.t06.many.frag # found chain 1sa3A in template set T0287 185 :FDLEKYMKE 1sa3A 131 :YDVETICTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31006 # 1ujpA.185.239 read from T0287.t06.many.frag # found chain 1ujpA in training set Warning: unaligning (T0287)D186 (1ujpA)S241 because P (beta_P) conformation "forbidden" or filtered. T0287 185 :F 1ujpA 240 :R T0287 187 :LEKYMKE 1ujpA 242 :LAPLLQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31008 # 1um0A.185.103 read from T0287.t06.many.frag # found chain 1um0A in template set T0287 185 :FDLEKYMKE 1um0A 104 :HADFTYFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31009 # 1w5rA.185.5 read from T0287.t06.many.frag # found chain 1w5rA in template set Warning: unaligning (T0287)F185 because first residue in template chain is (1w5rA)M3 T0287 186 :DLEKYMKE 1w5rA 4 :DLGGYLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31010 # 1rz4A.185.111 read from T0287.t06.many.frag # found chain 1rz4A in template set T0287 185 :FDLEKYMKE 1rz4A 112 :CHFQAFWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31011 # 1colA.185.88 read from T0287.t06.many.frag # found chain 1colA in template set Warning: unaligning (T0287)F185 because of BadResidue code BAD_PEPTIDE in next template residue (1colA)D90 Warning: unaligning (T0287)D186 because of BadResidue code BAD_PEPTIDE at template residue (1colA)D90 T0287 187 :LEKYMKE 1colA 91 :AQDMANK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31012 # 1mzgA.185.99 read from T0287.t06.many.frag # found chain 1mzgA in template set T0287 185 :FDLEKYMKE 1mzgA 100 :FDVRPWFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31013 # 1ifc.185.12 read from T0287.t06.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 185 :F 1ifc 12 :E T0287 187 :LEKYMKE 1ifc 14 :YEKFMEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31015 # 1oz2A.186.226 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 186 :DLEKYMKEK 1oz2A 423 :CWEKYLEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=31016 # 1qouA.186.150 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)K194 (1qouA)N158 because G (3-10) conformation "forbidden" or filtered. T0287 186 :DLEKYMKE 1qouA 150 :NTRKFTQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31017 # 1pyaB.186.206 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 186 :DLEKYMKEK 1pyaB 289 :TMPEWLEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31018 # 1o2dA.186.314 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 186 :DLEKYMKEK 1o2dA 303 :SLLKFLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31019 # 1j2rA.186.121 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 186 :DLEKYMKEK 1j2rA 122 :DLELQLRRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31020 # 1ywfA.186.271 read from T0287.t06.many.frag # found chain 1ywfA in template set Warning: unaligning (T0287)D186 (1ywfA)S252 because Y (epsilon') conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ywfA 253 :LGGYLRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31021 # 1orc.186.14 read from T0287.t06.many.frag # found chain 1orc in training set T0287 186 :DLEKYMKEK 1orc 15 :GQTKTAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31022 # 1n69A.186.67 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 186 :DLEKYMKEK 1n69A 66 :QPKEICALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31023 # 2c1lA.186.151 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)D186 (2c1lA)S152 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2c1lA 153 :WNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31024 # 1oz2A.186.118 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)D186 (1oz2A)S315 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1oz2A 316 :WSQYLRST Number of specific fragments extracted= 1 number of extra gaps= 1 total=31025 # 1xcrA.186.79 read from T0287.t06.many.frag # found chain 1xcrA in template set Warning: unaligning (T0287)D186 (1xcrA)D79 because E (beta_S) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1xcrA 80 :LNKIAKEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31026 # 1l5aA.186.311 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 186 :DLEKYMKEK 1l5aA 312 :RIEQIEQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31027 # 1f86A.186.64 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 186 :DLEKYMKEK 1f86A 74 :DTKSYWKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31028 # 1j54A.186.143 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 186 :DLEKYMKEK 1j54A 144 :SLDALCARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31029 # 1mtyG.186.147 read from T0287.t06.many.frag # found chain 1mtyG in training set Warning: unaligning (T0287)D186 (1mtyG)P151 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1mtyG 152 :LEELRKQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31030 # 2d0tA.186.317 read from T0287.t06.many.frag # found chain 2d0tA in template set Warning: unaligning (T0287)D186 (2d0tA)S315 because P (beta_P) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2d0tA 316 :VREFVLSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31031 # 2c71A.186.183 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 186 :DLEKYMKEK 2c71A 659 :TLTELFTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31032 # 1jr2A.186.170 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 186 :DLEKYMKEK 1jr2A 150 :ILPKALKDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31033 # 1wusA.186.117 read from T0287.t06.many.frag # found chain 1wusA in template set T0287 186 :DLEKYMKEK 1wusA 193 :KLSEYMKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31034 # 1uocA.186.227 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 186 :DLEKYMKEK 1uocA 228 :SLTTLADEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31035 # 1jubA.186.287 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 186 :DLEKYMKEK 1jubA 288 :ELEEIMNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31036 # 1vbkA.186.245 read from T0287.t06.many.frag # found chain 1vbkA in template set T0287 186 :DLEKYMKEK 1vbkA 246 :RVLKLIRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31037 # 1ucdA.186.112 read from T0287.t06.many.frag # found chain 1ucdA in training set T0287 186 :DLEKYMKEK 1ucdA 113 :DIIGALRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31038 # 1ifc.186.13 read from T0287.t06.many.frag # found chain 1ifc in training set Warning: unaligning (T0287)D186 (1ifc)N13 because L (left) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1ifc 14 :YEKFMEKM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31039 # 1um0A.186.104 read from T0287.t06.many.frag # found chain 1um0A in template set T0287 186 :DLEKYMKEK 1um0A 105 :ADFTYFHKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31040 # 1mtpA.186.263 read from T0287.t06.many.frag # found chain 1mtpA in training set Warning: unaligning (T0287)D186 (1mtpA)Q266 because D (zeta) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 1mtpA 267 :LVEVLAEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31041 # 1zsqA.186.140 read from T0287.t06.many.frag # found chain 1zsqA in template set T0287 186 :DLEKYMKEK 1zsqA 210 :DPLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31042 # 1od6A.186.72 read from T0287.t06.many.frag # found chain 1od6A in training set T0287 186 :DLEKYMKEK 1od6A 73 :LLVDFVRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31043 # 2b8nA.186.398 read from T0287.t06.many.frag # found chain 2b8nA in template set T0287 186 :DLEKYMKEK 2b8nA 387 :DSYNALKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31044 # 1ko6A.186.157 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 186 :DLEKYMKEK 1ko6A 834 :RLEAVSRKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31045 # 1oz2A.187.227 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 187 :LEKYMKEKG 1oz2A 424 :WEKYLEETG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31046 # 1o2dA.187.315 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 187 :LEKYMKEKG 1o2dA 304 :LLKFLKELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31047 # 1ywfA.187.272 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 187 :LEKYMKEKG 1ywfA 253 :LGGYLRDAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31048 # 1qouA.187.151 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 187 :LEKYMKEKG 1qouA 151 :TRKFTQENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31049 # 1pyaB.187.207 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 187 :LEKYMKEKG 1pyaB 290 :MPEWLEKMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31050 # 1j2rA.187.122 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 187 :LEKYMKEKG 1j2rA 123 :LELQLRRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31051 # 1l5aA.187.312 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 187 :LEKYMKEKG 1l5aA 313 :IEQIEQDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31052 # 1f86A.187.65 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 187 :LEKYMKEKG 1f86A 75 :TKSYWKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31053 # 1n69A.187.68 read from T0287.t06.many.frag # found chain 1n69A in template set Warning: unaligning (T0287)K194 (1n69A)V74 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1n69A 67 :PKEICAL T0287 195 :G 1n69A 75 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=31055 # 1orc.187.15 read from T0287.t06.many.frag # found chain 1orc in training set T0287 187 :LEKYMKEKG 1orc 16 :QTKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31056 # 1j54A.187.144 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 187 :LEKYMKEKG 1j54A 145 :LDALCARYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31057 # 1mtyG.187.148 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 187 :LEKYMKEKG 1mtyG 152 :LEELRKQRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31058 # 1oz2A.187.119 read from T0287.t06.many.frag # found chain 1oz2A in training set Warning: unaligning (T0287)K194 (1oz2A)T323 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1oz2A 316 :WSQYLRS T0287 195 :G 1oz2A 324 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31060 # 2c71A.187.184 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 187 :LEKYMKEKG 2c71A 660 :LTELFTLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31061 # 1jr2A.187.171 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 187 :LEKYMKEKG 1jr2A 151 :LPKALKDKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31062 # 1vbkA.187.246 read from T0287.t06.many.frag # found chain 1vbkA in template set T0287 187 :LEKYMKEKG 1vbkA 247 :VLKLIRDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31063 # 1xcrA.187.80 read from T0287.t06.many.frag # found chain 1xcrA in template set T0287 187 :LEKYMKEKG 1xcrA 80 :LNKIAKEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31064 # 1jubA.187.288 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 187 :LEKYMKEKG 1jubA 289 :LEEIMNQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31065 # 2c1lA.187.152 read from T0287.t06.many.frag # found chain 2c1lA in template set Warning: unaligning (T0287)G195 (2c1lA)L161 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKEK 2c1lA 153 :WNDMISEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31066 # 1zsqA.187.141 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 T0287 187 :LEKYMKEK 1zsqA 211 :PLLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=31067 # 1e5kA.187.156 read from T0287.t06.many.frag # found chain 1e5kA in training set T0287 187 :LEKYMKEKG 1e5kA 157 :VMVFMRLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31068 # 1ux5A.187.359 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 187 :LEKYMKEKG 1ux5A 1709 :FESLMHTYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31069 # 1i0dA.187.298 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 187 :LEKYMKEKG 1i0dA 332 :VIPFLREKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31070 # 1u4bA.187.514 read from T0287.t06.many.frag # found chain 1u4bA in training set T0287 187 :LEKYMKEKG 1u4bA 811 :LNARLKEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=31071 # 1l3lA.187.190 read from T0287.t06.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)K194 (1l3lA)E198 because G (3-10) conformation "forbidden" or filtered. T0287 187 :LEKYMKE 1l3lA 191 :MEEIADV T0287 195 :G 1l3lA 199 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=31073 # 1w6gA.187.115 read from T0287.t06.many.frag # found chain 1w6gA in template set T0287 187 :LEKYMKEKG 1w6gA 118 :WLKALAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31074 # 1ko6A.187.158 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 187 :LEKYMKEKG 1ko6A 835 :LEAVSRKQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31075 # 2bdeA.187.283 read from T0287.t06.many.frag # found chain 2bdeA in template set T0287 187 :LEKYMKEKG 2bdeA 284 :AKKFTEDLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31076 # 1t0fC.187.32 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 187 :LEKYMKEKG 1t0fC 534 :MHERLKGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31077 # 1uocA.187.228 read from T0287.t06.many.frag # found chain 1uocA in template set T0287 187 :LEKYMKEKG 1uocA 229 :LTTLADELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31078 # 1oz2A.188.228 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 425 :EKYLEETGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31079 # 1j2rA.188.123 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 188 :EKYMKEKGV 1j2rA 124 :ELQLRRRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31080 # 1o2dA.188.316 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K194 (1o2dA)L311 because G (3-10) conformation "forbidden" or filtered. T0287 188 :EKYMKE 1o2dA 305 :LKFLKE T0287 195 :GV 1o2dA 312 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31082 # 1qouA.188.152 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 188 :EKYMKEKGV 1qouA 152 :RKFTQENEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31083 # 1ywfA.188.273 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 188 :EKYMKEKGV 1ywfA 254 :GGYLRDAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31084 # 1pyaB.188.208 read from T0287.t06.many.frag # found chain 1pyaB in template set T0287 188 :EKYMKEKGV 1pyaB 291 :PEWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31085 # 1l5aA.188.313 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 188 :EKYMKEKGV 1l5aA 314 :EQIEQDQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31086 # 1i0dA.188.299 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 188 :EKYMKEKGV 1i0dA 333 :IPFLREKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31087 # 1mtyG.188.149 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 188 :EKYMKEKGV 1mtyG 153 :EELRKQRGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31088 # 1n69A.188.69 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 188 :EKYMKEKGV 1n69A 68 :KEICALVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31089 # 1jr2A.188.172 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 188 :EKYMKEKGV 1jr2A 152 :PKALKDKGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31090 # 1jubA.188.289 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 188 :EKYMKEKGV 1jubA 290 :EEIMNQKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31091 # 1j54A.188.145 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 188 :EKYMKEKGV 1j54A 146 :DALCARYEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31092 # 1f86A.188.66 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 188 :EKYMKEKGV 1f86A 76 :KSYWKALGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31093 # 2nacA.188.167 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 188 :EKYMKEKGV 2nacA 168 :SHEWARKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31094 # 1ko6A.188.159 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 188 :EKYMKEKGV 1ko6A 836 :EAVSRKQGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31095 # 1t0fC.188.33 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 188 :EKYMKEKGV 1t0fC 535 :HERLKGKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31096 # 2c71A.188.185 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 188 :EKYMKEKGV 2c71A 661 :TELFTLKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31097 # 1orc.188.16 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 T0287 188 :EKYMKEKG 1orc 17 :TKTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31098 # 1u4bA.188.515 read from T0287.t06.many.frag # found chain 1u4bA in training set T0287 188 :EKYMKEKGV 1u4bA 812 :NARLKEERL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31099 # 1vbkA.188.247 read from T0287.t06.many.frag # found chain 1vbkA in template set T0287 188 :EKYMKEKGV 1vbkA 248 :LKLIRDFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31100 # 1zsqA.188.142 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 T0287 188 :EKYMKEK 1zsqA 212 :LLEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=31101 # 1e5kA.188.157 read from T0287.t06.many.frag # found chain 1e5kA in training set T0287 188 :EKYMKEKGV 1e5kA 158 :MVFMRLAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31102 # 1lxjA.188.63 read from T0287.t06.many.frag # found chain 1lxjA in training set T0287 188 :EKYMKEKGV 1lxjA 64 :HEYGHEKGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31103 # 1nuuA.188.223 read from T0287.t06.many.frag # found chain 1nuuA in template set T0287 188 :EKYMKEKGV 1nuuA 224 :ITYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31104 # 1oz2A.188.120 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 188 :EKYMKEKGV 1oz2A 317 :SQYLRSTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31105 # 1l1sA.188.72 read from T0287.t06.many.frag # found chain 1l1sA in template set T0287 188 :EKYMKEKGV 1l1sA 73 :SNTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31106 # 1l3lA.188.191 read from T0287.t06.many.frag # found chain 1l3lA in training set T0287 188 :EKYMKEKGV 1l3lA 192 :EEIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31107 # 2d1pB.188.79 read from T0287.t06.many.frag # found chain 2d1pB in template set T0287 188 :EKYMKEKGV 2d1pB 80 :AASLRERGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31108 # 1ux5A.188.360 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 188 :EKYMKEKGV 1ux5A 1710 :ESLMHTYGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31109 # 1j2rA.189.124 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 189 :KYMKEKGVQ 1j2rA 125 :LQLRRRGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=31110 # 1oz2A.189.229 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 189 :KYMKEKGVQ 1oz2A 426 :KYLEETGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31111 # 1o2dA.189.317 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 189 :KYMKEKGVQ 1o2dA 306 :KFLKELGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31112 # 1ywfA.189.274 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 189 :KYMKEKGVQ 1ywfA 255 :GYLRDAGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31113 # 1pyaB.189.209 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)Q197 (1pyaB)K300 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1pyaB 292 :EWLEKMGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=31114 # 1i0dA.189.300 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 189 :KYMKEKGVQ 1i0dA 334 :PFLREKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31115 # 1qouA.189.153 read from T0287.t06.many.frag # found chain 1qouA in template set T0287 189 :KYMKEKGVQ 1qouA 153 :KFTQENELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31116 # 1l5aA.189.314 read from T0287.t06.many.frag # found chain 1l5aA in template set T0287 189 :KYMKEKGVQ 1l5aA 315 :QIEQDQGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31117 # 1mtyG.189.150 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 189 :KYMKEKGVQ 1mtyG 154 :ELRKQRGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31118 # 1u4bA.189.516 read from T0287.t06.many.frag # found chain 1u4bA in training set T0287 189 :KYMKEKGVQ 1u4bA 813 :ARLKEERLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31119 # 1t0fC.189.34 read from T0287.t06.many.frag # found chain 1t0fC in template set Warning: unaligning (T0287)Q197 (1t0fC)I544 because E (beta_S) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1t0fC 536 :ERLKGKGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31120 # 2nacA.189.168 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 189 :KYMKEKGVQ 2nacA 169 :HEWARKGGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=31121 # 1f86A.189.67 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 189 :KYMKEKGVQ 1f86A 77 :SYWKALGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31122 # 1jubA.189.290 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 189 :KYMKEKGVQ 1jubA 291 :EIMNQKGYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31123 # 1zsqA.189.143 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 189 :KYMKEK 1zsqA 213 :LEYRRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=31124 # 1jr2A.189.173 read from T0287.t06.many.frag # found chain 1jr2A in template set T0287 189 :KYMKEKGVQ 1jr2A 153 :KALKDKGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31125 # 1j54A.189.146 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 189 :KYMKEKGVQ 1j54A 147 :ALCARYEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=31126 # 2c71A.189.186 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 189 :KYMKEKGVQ 2c71A 662 :ELFTLKGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31127 # 1l1sA.189.73 read from T0287.t06.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l1sA 74 :NTLRASGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31128 # 1ko6A.189.160 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 189 :KYMKEKGVQ 1ko6A 837 :AVSRKQGAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31129 # 1vbkA.189.248 read from T0287.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)K194 (1vbkA)F254 because G (3-10) conformation "forbidden" or filtered. T0287 189 :KYMKE 1vbkA 249 :KLIRD T0287 195 :GVQ 1vbkA 255 :GVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31131 # 1n69A.189.70 read from T0287.t06.many.frag # found chain 1n69A in template set T0287 189 :KYMKEKGVQ 1n69A 69 :EICALVGFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=31132 # 1orc.189.17 read from T0287.t06.many.frag # found chain 1orc in training set Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE in next template residue (1orc)Y26 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1orc)Y26 T0287 189 :KYMKEKG 1orc 18 :KTAKDLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31133 # 1ux5A.189.361 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 189 :KYMKEKGVQ 1ux5A 1711 :SLMHTYGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=31134 # 1nuuA.189.224 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1nuuA 225 :TYIKDHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31135 # 2d1pB.189.80 read from T0287.t06.many.frag # found chain 2d1pB in template set Warning: unaligning (T0287)K194 (2d1pB)R86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q197 (2d1pB)D89 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKE 2d1pB 81 :ASLRE T0287 195 :GV 2d1pB 87 :GL Number of specific fragments extracted= 2 number of extra gaps= 2 total=31137 # 1e5kA.189.158 read from T0287.t06.many.frag # found chain 1e5kA in training set T0287 189 :KYMKEKGVQ 1e5kA 159 :VFMRLAGGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31138 # 1l3lA.189.192 read from T0287.t06.many.frag # found chain 1l3lA in training set Warning: unaligning (T0287)Q197 (1l3lA)K201 because P (beta_P) conformation "forbidden" or filtered. T0287 189 :KYMKEKGV 1l3lA 193 :EIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31139 # 1c1yB.189.29 read from T0287.t06.many.frag # found chain 1c1yB in template set T0287 189 :KYMKEKGVQ 1c1yB 84 :KALKVRGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31140 # 2cvbA.189.88 read from T0287.t06.many.frag # found chain 2cvbA in template set T0287 189 :KYMKEKGVQ 2cvbA 89 :AFAEEHGIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31141 # 1j2rA.190.125 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 190 :YMKEKGVQN 1j2rA 126 :QLRRRGIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31142 # 1oz2A.190.230 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 190 :YMKEKGVQN 1oz2A 427 :YLEETGASA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31143 # 1jubA.190.291 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 190 :YMKEKGVQN 1jubA 292 :IMNQKGYQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31144 # 1ywfA.190.275 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 190 :YMKEKGVQN 1ywfA 256 :YLRDAGISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31145 # 1i0dA.190.301 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 190 :YMKEKGVQN 1i0dA 335 :FLREKGVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31146 # 1mtyG.190.151 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 190 :YMKEKGVQN 1mtyG 155 :LRKQRGVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31147 # 1o2dA.190.318 read from T0287.t06.many.frag # found chain 1o2dA in training set Warning: unaligning (T0287)K194 (1o2dA)L311 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)Q197 (1o2dA)Y314 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKE 1o2dA 307 :FLKE T0287 195 :GV 1o2dA 312 :GL T0287 198 :N 1o2dA 315 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=31150 # 1pyaB.190.210 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)N198 (1pyaB)S301 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1pyaB 293 :WLEKMGYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31151 # 1vbkA.190.249 read from T0287.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)K194 (1vbkA)F254 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKE 1vbkA 250 :LIRD T0287 195 :GVQ 1vbkA 255 :GVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=31153 # 1t0fC.190.35 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 190 :YMKEKGVQN 1t0fC 537 :RLKGKGVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31154 # 2nacA.190.169 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 190 :YMKEKGVQN 2nacA 170 :EWARKGGWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31155 # 1onrA.190.116 read from T0287.t06.many.frag # found chain 1onrA in template set Warning: unaligning (T0287)Q197 (1onrA)S125 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1onrA 118 :LYNDAGI T0287 198 :N 1onrA 126 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=31157 # 1l1sA.190.74 read from T0287.t06.many.frag # found chain 1l1sA in template set T0287 190 :YMKEKGVQN 1l1sA 75 :TLRASGMDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31158 # 1zsqA.190.144 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 190 :YMKEK 1zsqA 214 :EYRRQ T0287 198 :N 1zsqA 222 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=31160 # 1qouA.190.154 read from T0287.t06.many.frag # found chain 1qouA in template set Warning: unaligning (T0287)Q197 (1qouA)G161 because S (epsilon) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1qouA 154 :FTQENEL T0287 198 :N 1qouA 162 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31162 # 1ko6A.190.161 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 190 :YMKEKGVQN 1ko6A 838 :VSRKQGAQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31163 # 1l5aA.190.315 read from T0287.t06.many.frag # found chain 1l5aA in template set Warning: unaligning (T0287)Q197 (1l5aA)N323 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1l5aA 316 :IEQDQGL T0287 198 :N 1l5aA 324 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=31165 # 1u4bA.190.517 read from T0287.t06.many.frag # found chain 1u4bA in training set Warning: unaligning (T0287)N198 (1u4bA)A822 because P (beta_P) conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1u4bA 814 :RLKEERLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=31166 # 2c71A.190.187 read from T0287.t06.many.frag # found chain 2c71A in template set T0287 190 :YMKEKGVQN 2c71A 663 :LFTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31167 # 1lxjA.190.65 read from T0287.t06.many.frag # found chain 1lxjA in training set T0287 190 :YMKEKGVQN 1lxjA 66 :YGHEKGYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31168 # 2cvbA.190.89 read from T0287.t06.many.frag # found chain 2cvbA in template set T0287 190 :YMKEKGVQN 2cvbA 90 :FAEEHGIFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31169 # 1i12A.190.142 read from T0287.t06.many.frag # found chain 1i12A in training set T0287 190 :YMKEKGVQN 1i12A 142 :FYEKCGFSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31170 # 1c1yB.190.30 read from T0287.t06.many.frag # found chain 1c1yB in template set T0287 190 :YMKEKGVQN 1c1yB 85 :ALKVRGLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31171 # 1j54A.190.147 read from T0287.t06.many.frag # found chain 1j54A in training set T0287 190 :YMKEKGVQN 1j54A 148 :LCARYEIDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31172 # 1n93X.190.364 read from T0287.t06.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 190 :YMKEKGVQ 1n93X 360 :IMKMIGVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=31173 # 1ux5A.190.362 read from T0287.t06.many.frag # found chain 1ux5A in template set T0287 190 :YMKEKGVQN 1ux5A 1712 :LMHTYGEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31174 # 1nuuA.190.225 read from T0287.t06.many.frag # found chain 1nuuA in template set Warning: unaligning (T0287)Q197 (1nuuA)Y233 because L (left) conformation "forbidden" or filtered. T0287 190 :YMKEKGV 1nuuA 226 :YIKDHGL T0287 198 :N 1nuuA 234 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=31176 # 1y42X.190.148 read from T0287.t06.many.frag # found chain 1y42X in template set T0287 190 :YMKEKGVQN 1y42X 180 :QMRARGYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31177 # 2d1pB.190.81 read from T0287.t06.many.frag # found chain 2d1pB in template set T0287 190 :YMKEKGVQN 2d1pB 82 :SLRERGLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31178 # 1f86A.190.68 read from T0287.t06.many.frag # found chain 1f86A in training set T0287 190 :YMKEKGVQN 1f86A 78 :YWKALGISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31179 # 1mtyG.191.152 read from T0287.t06.many.frag # found chain 1mtyG in training set T0287 191 :MKEKGVQNA 1mtyG 156 :RKQRGVRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31180 # 1t0fC.191.36 read from T0287.t06.many.frag # found chain 1t0fC in template set T0287 191 :MKEKGVQNA 1t0fC 538 :LKGKGVIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31181 # 1jubA.191.292 read from T0287.t06.many.frag # found chain 1jubA in training set T0287 191 :MKEKGVQNA 1jubA 293 :MNQKGYQSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31182 # 1j2rA.191.126 read from T0287.t06.many.frag # found chain 1j2rA in training set T0287 191 :MKEKGVQNA 1j2rA 127 :LRRRGIDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31183 # 1vbkA.191.250 read from T0287.t06.many.frag # found chain 1vbkA in template set Warning: unaligning (T0287)N198 (1vbkA)G258 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1vbkA 251 :IRDFGVK T0287 199 :A 1vbkA 259 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=31185 # 1onrA.191.117 read from T0287.t06.many.frag # found chain 1onrA in template set T0287 191 :MKEKGVQNA 1onrA 119 :YNDAGISND Number of specific fragments extracted= 1 number of extra gaps= 0 total=31186 # 1oz2A.191.231 read from T0287.t06.many.frag # found chain 1oz2A in training set T0287 191 :MKEKGVQNA 1oz2A 428 :LEETGASAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31187 # 1i0dA.191.302 read from T0287.t06.many.frag # found chain 1i0dA in training set T0287 191 :MKEKGVQNA 1i0dA 336 :LREKGVPQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31188 # 1ko6A.191.162 read from T0287.t06.many.frag # found chain 1ko6A in template set T0287 191 :MKEKGVQNA 1ko6A 839 :SRKQGAQFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31189 # 1sp3A.191.375 read from T0287.t06.many.frag # found chain 1sp3A in template set T0287 191 :MKEKGVQNA 1sp3A 376 :MLEKGIKYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31190 # 1zsqA.191.145 read from T0287.t06.many.frag # found chain 1zsqA in template set Warning: unaligning (T0287)K194 (1zsqA)Q218 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0287)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1zsqA)I220 Warning: unaligning (T0287)V196 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)I220 Warning: unaligning (T0287)Q197 because of BadResidue code BAD_PEPTIDE at template residue (1zsqA)P221 T0287 191 :MKE 1zsqA 215 :YRR T0287 198 :NA 1zsqA 222 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31192 # 1l1sA.191.75 read from T0287.t06.many.frag # found chain 1l1sA in template set Warning: unaligning (T0287)Q197 (1l1sA)D82 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1l1sA 76 :LRASGM T0287 198 :NA 1l1sA 83 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31194 # 2cvbA.191.90 read from T0287.t06.many.frag # found chain 2cvbA in template set Warning: unaligning (T0287)K194 (2cvbA)H94 because G (3-10) conformation "forbidden" or filtered. T0287 191 :MKE 2cvbA 91 :AEE T0287 195 :GVQNA 2cvbA 95 :GIFFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31196 # 2nacA.191.170 read from T0287.t06.many.frag # found chain 2nacA in training set T0287 191 :MKEKGVQNA 2nacA 171 :WARKGGWNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31197 # 1n93X.191.365 read from T0287.t06.many.frag # found chain 1n93X in training set Warning: unaligning (T0287)N198 (1n93X)G368 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1n93X 361 :MKMIGVT T0287 199 :A 1n93X 369 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31199 # 1c1yB.191.31 read from T0287.t06.many.frag # found chain 1c1yB in template set T0287 191 :MKEKGVQNA 1c1yB 86 :LKVRGLQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31200 # 1o2dA.191.319 read from T0287.t06.many.frag # found chain 1o2dA in training set T0287 191 :MKEKGVQNA 1o2dA 308 :LKELGLYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31201 # 1i12A.191.143 read from T0287.t06.many.frag # found chain 1i12A in training set T0287 191 :MKEKGVQNA 1i12A 143 :YEKCGFSNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31202 # 1ywfA.191.276 read from T0287.t06.many.frag # found chain 1ywfA in template set T0287 191 :MKEKGVQNA 1ywfA 257 :LRDAGISQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31203 # 1lxjA.191.66 read from T0287.t06.many.frag # found chain 1lxjA in training set T0287 191 :MKEKGVQNA 1lxjA 67 :GHEKGYVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31204 # 1u4bA.191.518 read from T0287.t06.many.frag # found chain 1u4bA in training set Warning: unaligning (T0287)N198 (1u4bA)A822 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1u4bA 815 :LKEERLQ T0287 199 :A 1u4bA 823 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=31206 # 1pyaB.191.211 read from T0287.t06.many.frag # found chain 1pyaB in template set Warning: unaligning (T0287)N198 (1pyaB)S301 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1pyaB 294 :LEKMGYK T0287 199 :A 1pyaB 302 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31208 # 1jr2A.191.175 read from T0287.t06.many.frag # found chain 1jr2A in template set Warning: unaligning (T0287)A199 (1jr2A)E163 because E (beta_S) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 1jr2A 155 :LKDKGIAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31209 # 1s3rA.191.283 read from T0287.t06.many.frag # found chain 1s3rA in template set Warning: unaligning (T0287)Q197 (1s3rA)N287 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGV 1s3rA 281 :LINRGV T0287 198 :NA 1s3rA 288 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31211 # 2c71A.191.188 read from T0287.t06.many.frag # found chain 2c71A in template set Warning: unaligning (T0287)A199 (2c71A)D672 because D (zeta) conformation "forbidden" or filtered. T0287 191 :MKEKGVQN 2c71A 664 :FTLKGVPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31212 # 1y42X.191.149 read from T0287.t06.many.frag # found chain 1y42X in template set Warning: unaligning (T0287)N198 (1y42X)A188 because P (beta_P) conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 1y42X 181 :MRARGYE T0287 199 :A 1y42X 189 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=31214 # 1nofA.191.119 read from T0287.t06.many.frag # found chain 1nofA in training set T0287 191 :MKEKGVQNA 1nofA 150 :MQTNGAPLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31215 # 1qddA.191.65 read from T0287.t06.many.frag # found chain 1qddA in training set T0287 191 :MKEKGVQNA 1qddA 66 :IKESGTDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31216 # 2igd.191.38 read from T0287.t06.many.frag # found chain 2igd in training set Warning: unaligning (T0287)N198 (2igd)G46 because Y (epsilon') conformation "forbidden" or filtered. T0287 191 :MKEKGVQ 2igd 39 :ANDNGVD T0287 199 :A 2igd 47 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=31218 # 1nuuA.191.226 read from T0287.t06.many.frag # found chain 1nuuA in template set T0287 191 :MKEKGVQNA 1nuuA 227 :IKDHGLYTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31219 # command:# Prefix for output files set to # command:# Printing 560 template chains to Template.atoms # Printed template library # command:# Prefix for output files set to decoys/ # command:CPU_time= 1300.61 sec, elapsed time= 2175.95 sec) # command:# Setting HealPeptide to 0.3 # Setting JiggleSubtree to 0.3 # Setting JiggleSegment to 0.3 # Setting OptSubtree to 1 # Setting OptSegment to 1 # Setting OptAllSegments to 0.3 # Setting ShiftSubtree to 0.3 # Setting ShiftSegment to 0.3 # Setting TweakPhiSubtree to 0.3 # Setting TweakPhiSegment to 0.3 # Setting TweakPsiSubtree to 0.3 # Setting TweakPsiSegment to 0.3 # Setting TweakPsiPhiSubtree to 0.3 # Setting TweakPsiPhiSegment to 0.3 # Setting TweakHbondSubtree to 0.3 # Setting TweakHbondSegment to 0.3 # Setting TweakMultimer to 0.3 # Setting TweakPeptide to 0.3 # Setting OneRotamer to 1 # Setting ClashingRotamer to 1 # Setting ClusteredRotamer to 2 # Setting ReduceBreak to 5 # Setting CloseGap to 5 # Setting HealGap to 5 # Setting MoveGap to 5 # Setting ReduceConstraint to 5 # Setting ImproveSSBond to 0 # Setting InsertSSBond to 0 # Setting InsertAlignment to 1 # Setting InsertSpecificFragment to 20 # Setting InsertFragment to 5 # Setting TwoFragment to 5 # Setting CrossOver to 3 # Setting CrossAndInsert to 5 # Setting ReduceClash to 5 # Initial Method pseudocounts set to # HealPeptide 0.3 # JiggleSubtree 0.3 # JiggleSegment 0.3 # OptSubtree 1 # OptSegment 1 # OptAllSegments 0.3 # ShiftSubtree 0.3 # ShiftSegment 0.3 # TweakPhiSubtree 0.3 # TweakPhiSegment 0.3 # TweakPsiSubtree 0.3 # TweakPsiSegment 0.3 # TweakPsiPhiSubtree 0.3 # TweakPsiPhiSegment 0.3 # TweakHbondSubtree 0.3 # TweakHbondSegment 0.3 # TweakMultimer 0.3 # TweakPeptide 0.3 # OneRotamer 1 # ClashingRotamer 1 # ClusteredRotamer 2 # ReduceBreak 5 # CloseGap 5 # HealGap 5 # MoveGap 5 # ReduceConstraint 5 # ImproveSSBond 0 # InsertSSBond 0 # InsertAlignment 1 # InsertSpecificFragment 20 # InsertFragment 5 # TwoFragment 5 # CrossOver 3 # CrossAndInsert 5 # ReduceClash 5 # command:# OptConform to optimize cost = # ( 15 * wet6.5(6.5, /log(length)) + 15 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 2 * phobic_fit + 5 * sidechain + 5 * n_ca_c + 10 * bad_peptide + 5 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 20 * break + 3 * pred_alpha2k + 3 * pred_alpha04 + 7 * constraints + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair ) # Will do 5 iterations of optimization # iteration 0 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try5 at pool[8] 228.099 cost/residue, 263 clashes 0.286565 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0287.try5 228.099 cost/residue, 263 clashes 0.286565 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 0 1 / 2 = 0.50000 0.02042 ## ClashingRotamer 0 0 0 / 0 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 8 = 0.37500 0.31936 ## CloseGap 0 1 1 / 8 = 0.12500 0.05723 ## HealGap 0 1 0 / 6 = 0.00000 0.00000 ## MoveGap 0 2 2 / 5 = 0.40000 1.14883 ## ReduceConstraint 0 2 1 / 9 = 0.11111 0.57720 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 1 / 22 = 0.04545 0.91777 ## InsertFragment 0 0 0 / 6 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 9 = 0.00000 0.00000 ## CrossOver 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 3 = 0.00000 0.00000 ## ReduceClash 0 2 1 / 9 = 0.11111 0.15261 # generation 2: best score out of 20: T0287.try5 228.09874 cost/residue, 263 clashes 0.28657 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 1 = 1.00000 0.04134 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 1 / 1 = 1.00000 0.00592 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 1 / 3 = 0.33333 0.01361 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ReduceBreak 0 2 3 / 14 = 0.21429 0.18249 ## CloseGap 0 3 2 / 15 = 0.13333 0.06133 ## HealGap 0 1 0 / 10 = 0.00000 0.00000 ## MoveGap 0 7 3 / 15 = 0.20000 0.40424 ## ReduceConstraint 0 3 1 / 16 = 0.06250 0.32467 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 1 / 47 = 0.02128 0.42960 ## InsertFragment 0 2 1 / 13 = 0.07692 0.00897 ## TwoFragment 0 0 0 / 14 = 0.00000 0.00000 ## CrossOver 0 0 0 / 5 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 8 = 0.00000 0.00000 ## ReduceClash 0 3 3 / 16 = 0.18750 0.22367 # generation 3: best score out of 20: T0287.try5 227.53775 cost/residue, 263 clashes 0.30375 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 1 2 2 / 2 = 1.00000 0.02068 ## TweakPsiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 2 / 3 = 0.66667 0.05196 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 1 / 3 = 0.33333 0.01361 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 4 = 0.00000 0.00000 ## ReduceBreak 0 3 3 / 18 = 0.16667 0.14194 ## CloseGap 0 3 2 / 15 = 0.13333 0.06133 ## HealGap 0 1 0 / 15 = 0.00000 0.00000 ## MoveGap 0 8 3 / 21 = 0.14286 0.28875 ## ReduceConstraint 0 3 1 / 24 = 0.04167 0.21645 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 1 / 78 = 0.01282 0.25886 ## InsertFragment 0 2 1 / 21 = 0.04762 0.00555 ## TwoFragment 0 1 0 / 23 = 0.00000 0.00000 ## CrossOver 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 1 1 / 16 = 0.06250 0.01219 ## ReduceClash 0 4 4 / 20 = 0.20000 0.20698 # generation 4: best score out of 20: T0287.try5 226.65482 cost/residue, 265 clashes 0.29636 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 2 2 2 / 2 = 1.00000 0.02068 ## TweakPsiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 3 3 / 4 = 0.75000 0.04823 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 2 1 / 6 = 0.16667 0.00681 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 5 = 0.00000 0.00000 ## ReduceBreak 0 6 5 / 26 = 0.19231 0.11850 ## CloseGap 0 3 2 / 20 = 0.10000 0.04600 ## HealGap 0 1 0 / 21 = 0.00000 0.00000 ## MoveGap 0 10 3 / 24 = 0.12500 0.25265 ## ReduceConstraint 0 4 2 / 37 = 0.05405 0.16426 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 1 / 97 = 0.01031 0.20816 ## InsertFragment 0 3 2 / 28 = 0.07143 0.01116 ## TwoFragment 0 1 0 / 27 = 0.00000 0.00000 ## CrossOver 0 1 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 21 = 0.04762 0.00929 ## ReduceClash 0 4 4 / 29 = 0.13793 0.14275 # generation 5: best score out of 20: T0287.try5 218.33011 cost/residue, 269 clashes 0.23703 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 2 4 2 / 4 = 0.50000 0.01034 ## TweakPsiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 3 / 5 = 0.60000 0.03858 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 2 = 0.50000 0.00044 ## OneRotamer 0 2 1 / 6 = 0.16667 0.00681 ## ClashingRotamer 0 0 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 9 8 / 41 = 0.19512 0.36775 ## CloseGap 0 3 2 / 24 = 0.08333 0.03833 ## HealGap 0 1 0 / 23 = 0.00000 0.00000 ## MoveGap 0 14 3 / 34 = 0.08824 0.17834 ## ReduceConstraint 0 4 2 / 39 = 0.05128 0.15584 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 1 / 117 = 0.00855 0.17257 ## InsertFragment 0 3 2 / 34 = 0.05882 0.00919 ## TwoFragment 0 1 0 / 34 = 0.00000 0.00000 ## CrossOver 0 1 0 / 20 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 26 = 0.03846 0.00750 ## ReduceClash 0 5 5 / 35 = 0.14286 0.20823 # generation 6: best score out of 20: T0287.try5 218.33011 cost/residue, 269 clashes 0.23703 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 2 4 2 / 5 = 0.40000 0.00827 ## TweakPsiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 3 / 6 = 0.50000 0.03215 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 2 = 0.50000 0.00044 ## OneRotamer 0 2 1 / 7 = 0.14286 0.00583 ## ClashingRotamer 0 0 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 13 = 0.00000 0.00000 ## ReduceBreak 0 10 8 / 49 = 0.16327 0.30771 ## CloseGap 0 5 3 / 29 = 0.10345 0.15165 ## HealGap 0 2 0 / 25 = 0.00000 0.00000 ## MoveGap 0 16 3 / 41 = 0.07317 0.14789 ## ReduceConstraint 0 7 3 / 48 = 0.06250 0.27481 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 146 = 0.00685 0.13829 ## InsertFragment 0 3 2 / 36 = 0.05556 0.00868 ## TwoFragment 0 1 0 / 39 = 0.00000 0.00000 ## CrossOver 0 2 0 / 25 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 29 = 0.03448 0.00673 ## ReduceClash 0 6 6 / 43 = 0.13953 0.17454 # generation 7: best score out of 20: T0287.try5 217.88750 cost/residue, 265 clashes 0.28346 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 2 5 2 / 6 = 0.33333 0.00689 ## TweakPsiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 3 / 6 = 0.50000 0.03215 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 2 = 0.50000 0.00044 ## OneRotamer 0 3 1 / 8 = 0.12500 0.00510 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 13 = 0.00000 0.00000 ## ReduceBreak 0 11 9 / 55 = 0.16364 0.30903 ## CloseGap 0 6 6 / 37 = 0.16216 0.13040 ## HealGap 0 6 0 / 33 = 0.00000 0.00000 ## MoveGap 0 19 6 / 47 = 0.12766 0.14442 ## ReduceConstraint 0 7 3 / 51 = 0.05882 0.25864 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 170 = 0.00588 0.11877 ## InsertFragment 0 3 2 / 46 = 0.04348 0.00679 ## TwoFragment 0 1 0 / 42 = 0.00000 0.00000 ## CrossOver 0 2 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 34 = 0.02941 0.00574 ## ReduceClash 0 7 6 / 54 = 0.11111 0.13898 # generation 8: best score out of 20: T0287.try5 217.13490 cost/residue, 255 clashes 0.24468 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 2 5 2 / 6 = 0.33333 0.00689 ## TweakPsiSubtree 0 4 1 / 5 = 0.20000 0.00110 ## TweakPsiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 4 / 7 = 0.57143 0.05283 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 4 = 0.25000 0.00022 ## OneRotamer 0 4 1 / 9 = 0.11111 0.00454 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 15 = 0.00000 0.00000 ## ReduceBreak 0 12 10 / 62 = 0.16129 0.27451 ## CloseGap 0 6 6 / 38 = 0.15789 0.12697 ## HealGap 0 6 0 / 35 = 0.00000 0.00000 ## MoveGap 0 23 9 / 55 = 0.16364 0.24362 ## ReduceConstraint 0 7 3 / 64 = 0.04688 0.20611 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 191 = 0.00524 0.10571 ## InsertFragment 0 3 2 / 48 = 0.04167 0.00651 ## TwoFragment 0 1 0 / 53 = 0.00000 0.00000 ## CrossOver 0 2 0 / 36 = 0.00000 0.00000 ## CrossAndInsert 1 1 1 / 39 = 0.02564 0.00500 ## ReduceClash 0 8 6 / 65 = 0.09231 0.11546 # generation 9: best score out of 20: T0287.try5 215.71399 cost/residue, 287 clashes 0.23097 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 2 5 2 / 6 = 0.33333 0.00689 ## TweakPsiSubtree 0 4 1 / 5 = 0.20000 0.00110 ## TweakPsiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 4 / 8 = 0.50000 0.04622 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 5 = 0.20000 0.00018 ## OneRotamer 0 5 1 / 10 = 0.10000 0.00408 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 18 = 0.00000 0.00000 ## ReduceBreak 0 12 11 / 76 = 0.14474 0.22444 ## CloseGap 0 7 7 / 45 = 0.15556 0.12695 ## HealGap 0 6 0 / 39 = 0.00000 0.00000 ## MoveGap 0 28 12 / 64 = 0.18750 0.22594 ## ReduceConstraint 0 8 4 / 73 = 0.05479 0.19036 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 212 = 0.00472 0.09524 ## InsertFragment 0 3 2 / 49 = 0.04082 0.00638 ## TwoFragment 0 2 1 / 59 = 0.01695 0.04434 ## CrossOver 0 2 0 / 39 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 43 = 0.02326 0.00454 ## ReduceClash 0 8 6 / 70 = 0.08571 0.10722 # generation 10: best score out of 20: T0287.try5 213.31700 cost/residue, 256 clashes 0.23163 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 2 8 4 / 9 = 0.44444 0.00460 ## TweakPsiSubtree 0 4 1 / 5 = 0.20000 0.00110 ## TweakPsiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 4 / 8 = 0.50000 0.04622 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 7 = 0.14286 0.00013 ## OneRotamer 0 6 1 / 11 = 0.09091 0.00371 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 19 = 0.00000 0.00000 ## ReduceBreak 0 14 12 / 83 = 0.14458 0.23439 ## CloseGap 0 7 7 / 51 = 0.13725 0.11202 ## HealGap 0 6 0 / 45 = 0.00000 0.00000 ## MoveGap 0 31 12 / 70 = 0.17143 0.20658 ## ReduceConstraint 0 8 4 / 78 = 0.05128 0.17815 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 234 = 0.00427 0.08629 ## InsertFragment 0 3 2 / 54 = 0.03704 0.00579 ## TwoFragment 0 2 1 / 67 = 0.01493 0.03905 ## CrossOver 0 2 0 / 42 = 0.00000 0.00000 ## CrossAndInsert 2 2 1 / 50 = 0.02000 0.00390 ## ReduceClash 0 8 6 / 86 = 0.06977 0.08727 # generation 11: best score out of 20: T0287.try5 213.31700 cost/residue, 256 clashes 0.23163 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 2 8 4 / 9 = 0.44444 0.00460 ## TweakPsiSubtree 0 4 1 / 6 = 0.16667 0.00092 ## TweakPsiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 6 5 / 11 = 0.45455 0.03364 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 8 2 / 13 = 0.15385 0.00712 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 20 = 0.00000 0.00000 ## ReduceBreak 0 14 12 / 88 = 0.13636 0.22107 ## CloseGap 0 8 8 / 62 = 0.12903 0.10646 ## HealGap 0 6 0 / 52 = 0.00000 0.00000 ## MoveGap 0 36 17 / 78 = 0.21795 0.28393 ## ReduceConstraint 0 9 4 / 89 = 0.04494 0.15614 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 253 = 0.00395 0.07981 ## InsertFragment 0 3 2 / 59 = 0.03390 0.00530 ## TwoFragment 0 2 1 / 72 = 0.01389 0.03633 ## CrossOver 0 2 0 / 42 = 0.00000 0.00000 ## CrossAndInsert 2 2 1 / 53 = 0.01887 0.00368 ## ReduceClash 0 8 6 / 94 = 0.06383 0.07984 # generation 12: best score out of 20: T0287.try5 212.44875 cost/residue, 255 clashes 0.23475 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 8 4 / 9 = 0.44444 0.00460 ## TweakPsiSubtree 0 4 1 / 6 = 0.16667 0.00092 ## TweakPsiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 6 6 / 13 = 0.46154 0.03108 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 5 0 / 5 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 8 2 / 14 = 0.14286 0.00661 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 20 = 0.00000 0.00000 ## ReduceBreak 0 15 12 / 95 = 0.12632 0.20478 ## CloseGap 0 8 8 / 68 = 0.11765 0.09707 ## HealGap 0 6 0 / 57 = 0.00000 0.00000 ## MoveGap 0 42 23 / 96 = 0.23958 0.29816 ## ReduceConstraint 0 10 4 / 94 = 0.04255 0.14783 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 274 = 0.00730 0.07399 ## InsertFragment 0 5 3 / 67 = 0.04478 0.01361 ## TwoFragment 0 2 1 / 77 = 0.01299 0.03398 ## CrossOver 0 2 0 / 46 = 0.00000 0.00000 ## CrossAndInsert 2 2 1 / 57 = 0.01754 0.00342 ## ReduceClash 0 9 7 / 100 = 0.07000 0.08226 # generation 13: best score out of 20: T0287.try5 212.44875 cost/residue, 255 clashes 0.23475 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 8 4 / 9 = 0.44444 0.00460 ## TweakPsiSubtree 0 4 1 / 6 = 0.16667 0.00092 ## TweakPsiSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 7 6 / 14 = 0.42857 0.02886 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 5 0 / 5 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 8 2 / 14 = 0.14286 0.00661 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 22 = 0.00000 0.00000 ## ReduceBreak 0 17 13 / 105 = 0.12381 0.18708 ## CloseGap 0 8 8 / 73 = 0.10959 0.09042 ## HealGap 0 7 0 / 61 = 0.00000 0.00000 ## MoveGap 0 46 24 / 112 = 0.21429 0.25939 ## ReduceConstraint 0 11 4 / 99 = 0.04040 0.14036 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 298 = 0.00671 0.06803 ## InsertFragment 0 6 3 / 72 = 0.04167 0.01266 ## TwoFragment 0 2 1 / 83 = 0.01205 0.03152 ## CrossOver 0 2 0 / 48 = 0.00000 0.00000 ## CrossAndInsert 2 2 1 / 59 = 0.01695 0.00331 ## ReduceClash 0 9 7 / 109 = 0.06422 0.07547 # generation 14: best score out of 20: T0287.try5 212.26828 cost/residue, 255 clashes 0.23550 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 2 1 / 2 = 0.50000 0.01469 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 8 4 / 9 = 0.44444 0.00460 ## TweakPsiSubtree 0 5 1 / 7 = 0.14286 0.00078 ## TweakPsiSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 9 6 / 18 = 0.33333 0.02245 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 6 1 / 6 = 0.16667 0.02052 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 8 2 / 16 = 0.12500 0.00578 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 25 = 0.00000 0.00000 ## ReduceBreak 0 20 14 / 115 = 0.12174 0.17169 ## CloseGap 0 8 8 / 84 = 0.09524 0.07858 ## HealGap 0 7 0 / 65 = 0.00000 0.00000 ## MoveGap 0 48 26 / 123 = 0.21138 0.24156 ## ReduceConstraint 0 11 4 / 103 = 0.03883 0.13491 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 4 / 318 = 0.01258 0.06686 ## InsertFragment 0 6 4 / 75 = 0.05333 0.01401 ## TwoFragment 0 2 1 / 89 = 0.01124 0.02939 ## CrossOver 0 2 0 / 52 = 0.00000 0.00000 ## CrossAndInsert 2 2 1 / 63 = 0.01587 0.00310 ## ReduceClash 0 9 7 / 119 = 0.05882 0.06913 # generation 15: best score out of 20: T0287.try5 210.86455 cost/residue, 251 clashes 0.16124 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 7 = 0.00000 0.00000 ## JiggleSubtree 0 3 1 / 4 = 0.25000 0.00734 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 8 4 / 9 = 0.44444 0.00460 ## TweakPsiSubtree 0 8 1 / 10 = 0.10000 0.00055 ## TweakPsiSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 1 / 4 = 0.25000 0.00158 ## TweakPsiPhiSegment 1 9 6 / 19 = 0.31579 0.02127 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 8 2 / 9 = 0.22222 0.01544 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 8 2 / 16 = 0.12500 0.00578 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 27 = 0.00000 0.00000 ## ReduceBreak 0 20 14 / 123 = 0.11382 0.16053 ## CloseGap 0 8 8 / 86 = 0.09302 0.07675 ## HealGap 0 7 0 / 68 = 0.00000 0.00000 ## MoveGap 0 51 29 / 143 = 0.20280 0.23137 ## ReduceConstraint 0 11 4 / 110 = 0.03636 0.12633 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 4 / 341 = 0.01173 0.06235 ## InsertFragment 0 6 4 / 76 = 0.05263 0.01383 ## TwoFragment 0 3 2 / 94 = 0.02128 0.03021 ## CrossOver 0 2 0 / 54 = 0.00000 0.00000 ## CrossAndInsert 2 2 1 / 69 = 0.01449 0.00283 ## ReduceClash 0 9 7 / 125 = 0.05600 0.06581 # generation 16: best score out of 20: T0287.try5 210.74242 cost/residue, 250 clashes 0.16204 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 7 = 0.00000 0.00000 ## JiggleSubtree 0 3 1 / 4 = 0.25000 0.00734 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 9 4 / 10 = 0.40000 0.00414 ## TweakPsiSubtree 0 8 1 / 10 = 0.10000 0.00055 ## TweakPsiSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 1 / 4 = 0.25000 0.00158 ## TweakPsiPhiSegment 1 10 7 / 20 = 0.35000 0.02631 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 8 2 / 9 = 0.22222 0.01544 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 10 2 / 18 = 0.11111 0.00514 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 28 = 0.00000 0.00000 ## ReduceBreak 0 20 14 / 128 = 0.10938 0.15426 ## CloseGap 0 8 8 / 91 = 0.08791 0.07254 ## HealGap 0 7 0 / 75 = 0.00000 0.00000 ## MoveGap 0 52 30 / 153 = 0.19608 0.22062 ## ReduceConstraint 0 13 4 / 119 = 0.03361 0.11677 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 369 = 0.01084 0.05762 ## InsertFragment 0 7 5 / 82 = 0.06098 0.01360 ## TwoFragment 0 3 2 / 100 = 0.02000 0.02840 ## CrossOver 0 4 2 / 57 = 0.03509 0.00000 ## CrossAndInsert 2 2 1 / 76 = 0.01316 0.00257 ## ReduceClash 0 9 7 / 130 = 0.05385 0.06328 # generation 17: best score out of 20: T0287.try5 210.73712 cost/residue, 249 clashes 0.16205 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 9 = 0.00000 0.00000 ## JiggleSubtree 0 3 1 / 5 = 0.20000 0.00587 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 9 4 / 10 = 0.40000 0.00414 ## TweakPsiSubtree 0 9 2 / 11 = 0.18182 0.00096 ## TweakPsiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 4 2 / 5 = 0.40000 0.00287 ## TweakPsiPhiSegment 1 14 8 / 24 = 0.33333 0.02215 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 8 2 / 10 = 0.20000 0.01389 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 3 / 13 = 0.23077 0.00082 ## OneRotamer 0 10 2 / 18 = 0.11111 0.00514 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 29 = 0.00000 0.00000 ## ReduceBreak 0 20 14 / 135 = 0.10370 0.14626 ## CloseGap 0 8 8 / 93 = 0.08602 0.07098 ## HealGap 0 7 0 / 78 = 0.00000 0.00000 ## MoveGap 0 54 31 / 164 = 0.18902 0.21017 ## ReduceConstraint 0 13 4 / 126 = 0.03175 0.11029 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 398 = 0.01005 0.05342 ## InsertFragment 0 7 5 / 88 = 0.05682 0.01268 ## TwoFragment 0 3 2 / 107 = 0.01869 0.02654 ## CrossOver 0 5 2 / 59 = 0.03390 0.00000 ## CrossAndInsert 2 2 1 / 79 = 0.01266 0.00247 ## ReduceClash 0 9 7 / 136 = 0.05147 0.06049 # generation 18: best score out of 20: T0287.try5 210.73712 cost/residue, 249 clashes 0.16205 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 11 = 0.00000 0.00000 ## JiggleSubtree 0 4 1 / 6 = 0.16667 0.00490 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 9 4 / 10 = 0.40000 0.00414 ## TweakPsiSubtree 0 10 3 / 12 = 0.25000 0.00145 ## TweakPsiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 5 3 / 6 = 0.50000 0.01612 ## TweakPsiPhiSegment 1 14 8 / 24 = 0.33333 0.02215 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 8 2 / 11 = 0.18182 0.01263 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 9 3 / 13 = 0.23077 0.00082 ## OneRotamer 0 11 3 / 19 = 0.15789 0.00733 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 21 14 / 144 = 0.09722 0.13712 ## CloseGap 0 8 8 / 100 = 0.08000 0.06601 ## HealGap 0 8 0 / 85 = 0.00000 0.00000 ## MoveGap 0 54 31 / 185 = 0.16757 0.18632 ## ReduceConstraint 0 14 4 / 136 = 0.02941 0.10218 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 407 = 0.00983 0.05224 ## InsertFragment 0 9 5 / 93 = 0.05376 0.01199 ## TwoFragment 0 3 2 / 110 = 0.01818 0.02582 ## CrossOver 0 7 2 / 64 = 0.03125 0.00000 ## CrossAndInsert 2 2 1 / 83 = 0.01205 0.00235 ## ReduceClash 0 9 7 / 144 = 0.04861 0.05713 # generation 19: best score out of 20: T0287.try5 210.46802 cost/residue, 241 clashes 0.16135 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 11 = 0.00000 0.00000 ## JiggleSubtree 0 4 1 / 6 = 0.16667 0.00490 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 3 11 4 / 13 = 0.30769 0.00318 ## TweakPsiSubtree 0 11 3 / 13 = 0.23077 0.00134 ## TweakPsiSegment 0 5 0 / 7 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 7 4 / 8 = 0.50000 0.01878 ## TweakPsiPhiSegment 1 15 8 / 26 = 0.30769 0.02044 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 9 3 / 12 = 0.25000 0.04007 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 3 / 15 = 0.20000 0.00071 ## OneRotamer 0 11 3 / 20 = 0.15000 0.00696 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 21 14 / 150 = 0.09333 0.13163 ## CloseGap 0 8 8 / 110 = 0.07273 0.06001 ## HealGap 0 8 0 / 89 = 0.00000 0.00000 ## MoveGap 0 54 31 / 195 = 0.15897 0.17676 ## ReduceConstraint 0 14 4 / 147 = 0.02721 0.09453 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 426 = 0.00939 0.04991 ## InsertFragment 0 10 6 / 99 = 0.06061 0.01176 ## TwoFragment 0 3 2 / 114 = 0.01754 0.02491 ## CrossOver 1 7 2 / 66 = 0.03030 0.00000 ## CrossAndInsert 2 2 1 / 84 = 0.01190 0.00232 ## ReduceClash 0 9 7 / 151 = 0.04636 0.05448 # generation 20: best score out of 20: T0287.try5 210.27234 cost/residue, 241 clashes 0.16134 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 12 = 0.00000 0.00000 ## JiggleSubtree 0 4 1 / 7 = 0.14286 0.00420 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00000 ## TweakPhiSegment 3 11 4 / 13 = 0.30769 0.00318 ## TweakPsiSubtree 0 11 3 / 13 = 0.23077 0.00134 ## TweakPsiSegment 0 5 0 / 7 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 12 5 / 14 = 0.35714 0.02471 ## TweakPsiPhiSegment 1 16 8 / 27 = 0.29630 0.01968 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 11 5 / 17 = 0.29412 0.04744 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 3 / 15 = 0.20000 0.00071 ## OneRotamer 0 13 3 / 24 = 0.12500 0.00580 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 22 15 / 160 = 0.09375 0.12446 ## CloseGap 0 8 8 / 116 = 0.06897 0.05690 ## HealGap 0 8 0 / 92 = 0.00000 0.00000 ## MoveGap 0 54 31 / 205 = 0.15122 0.16814 ## ReduceConstraint 0 14 4 / 156 = 0.02564 0.08908 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 446 = 0.00897 0.04767 ## InsertFragment 0 10 6 / 100 = 0.06000 0.01165 ## TwoFragment 0 3 2 / 121 = 0.01653 0.02347 ## CrossOver 1 7 2 / 67 = 0.02985 0.00000 ## CrossAndInsert 2 2 1 / 87 = 0.01149 0.00224 ## ReduceClash 0 9 7 / 156 = 0.04487 0.05273 # generation 21: best score out of 20: T0287.try5 210.04428 cost/residue, 224 clashes 0.16560 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 12 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 8 = 0.12500 0.00367 ## JiggleSegment 0 1 1 / 8 = 0.12500 0.08259 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00000 ## TweakPhiSegment 3 11 4 / 13 = 0.30769 0.00318 ## TweakPsiSubtree 0 11 3 / 14 = 0.21429 0.00124 ## TweakPsiSegment 0 8 2 / 10 = 0.20000 0.00018 ## TweakPsiPhiSubtree 1 13 6 / 15 = 0.40000 0.02337 ## TweakPsiPhiSegment 1 18 10 / 30 = 0.33333 0.02196 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 12 6 / 23 = 0.26087 0.03638 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 4 / 16 = 0.25000 0.00094 ## OneRotamer 0 13 3 / 25 = 0.12000 0.00557 ## ClashingRotamer 0 0 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 32 = 0.00000 0.00000 ## ReduceBreak 0 24 16 / 167 = 0.09581 0.11985 ## CloseGap 0 8 8 / 120 = 0.06667 0.05501 ## HealGap 0 8 0 / 95 = 0.00000 0.00000 ## MoveGap 0 54 31 / 212 = 0.14623 0.16259 ## ReduceConstraint 0 14 4 / 160 = 0.02500 0.08685 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 468 = 0.00855 0.04543 ## InsertFragment 0 10 6 / 104 = 0.05769 0.01120 ## TwoFragment 0 3 2 / 128 = 0.01562 0.02219 ## CrossOver 1 7 2 / 72 = 0.02778 0.00000 ## CrossAndInsert 2 2 1 / 94 = 0.01064 0.00208 ## ReduceClash 0 9 7 / 160 = 0.04375 0.05142 # generation 22: best score out of 20: T0287.try5 209.94588 cost/residue, 225 clashes 0.16598 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 12 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 8 = 0.12500 0.00367 ## JiggleSegment 0 3 2 / 17 = 0.11765 0.04881 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00000 ## TweakPhiSegment 3 12 4 / 14 = 0.28571 0.00296 ## TweakPsiSubtree 0 11 3 / 14 = 0.21429 0.00124 ## TweakPsiSegment 0 8 2 / 10 = 0.20000 0.00018 ## TweakPsiPhiSubtree 1 15 7 / 19 = 0.36842 0.01971 ## TweakPsiPhiSegment 1 20 12 / 33 = 0.36364 0.03026 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 16 9 / 29 = 0.31034 0.03586 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 11 4 / 17 = 0.23529 0.00089 ## OneRotamer 0 13 3 / 26 = 0.11538 0.00535 ## ClashingRotamer 0 0 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 0 5 0 / 37 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 174 = 0.09770 0.11645 ## CloseGap 0 8 8 / 127 = 0.06299 0.05197 ## HealGap 0 8 0 / 97 = 0.00000 0.00000 ## MoveGap 0 54 31 / 217 = 0.14286 0.15884 ## ReduceConstraint 0 14 4 / 170 = 0.02353 0.08174 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 481 = 0.00832 0.04421 ## InsertFragment 0 11 7 / 113 = 0.06195 0.01057 ## TwoFragment 0 3 2 / 131 = 0.01527 0.02168 ## CrossOver 1 8 3 / 74 = 0.04054 0.00363 ## CrossAndInsert 2 2 1 / 98 = 0.01020 0.00199 ## ReduceClash 0 9 7 / 167 = 0.04192 0.04926 # generation 23: best score out of 20: T0287.try5 209.84082 cost/residue, 219 clashes 0.16816 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 9 = 0.11111 0.00326 ## JiggleSegment 0 5 3 / 24 = 0.12500 0.04442 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00000 ## TweakPhiSegment 3 12 4 / 14 = 0.28571 0.00296 ## TweakPsiSubtree 0 11 3 / 14 = 0.21429 0.00124 ## TweakPsiSegment 0 10 3 / 12 = 0.25000 0.00890 ## TweakPsiPhiSubtree 2 19 8 / 24 = 0.33333 0.01580 ## TweakPsiPhiSegment 1 21 13 / 35 = 0.37143 0.02870 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 16 9 / 30 = 0.30000 0.03467 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 5 / 19 = 0.26316 0.00086 ## OneRotamer 0 13 3 / 26 = 0.11538 0.00535 ## ClashingRotamer 0 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 41 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 181 = 0.09392 0.11195 ## CloseGap 0 8 8 / 134 = 0.05970 0.04926 ## HealGap 0 8 0 / 100 = 0.00000 0.00000 ## MoveGap 0 54 31 / 226 = 0.13717 0.15252 ## ReduceConstraint 0 14 4 / 179 = 0.02235 0.07763 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 495 = 0.00808 0.04296 ## InsertFragment 0 11 7 / 121 = 0.05785 0.00987 ## TwoFragment 0 3 2 / 133 = 0.01504 0.02135 ## CrossOver 1 8 3 / 78 = 0.03846 0.00344 ## CrossAndInsert 2 2 1 / 101 = 0.00990 0.00193 ## ReduceClash 0 9 7 / 172 = 0.04070 0.04783 # generation 24: best score out of 20: T0287.try5 209.57809 cost/residue, 222 clashes 0.16830 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 10 = 0.10000 0.00294 ## JiggleSegment 0 6 4 / 29 = 0.13793 0.03882 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00000 ## TweakPhiSegment 3 12 4 / 15 = 0.26667 0.00276 ## TweakPsiSubtree 0 12 4 / 15 = 0.26667 0.00131 ## TweakPsiSegment 0 13 4 / 15 = 0.26667 0.01977 ## TweakPsiPhiSubtree 2 20 8 / 26 = 0.30769 0.01458 ## TweakPsiPhiSegment 2 23 14 / 39 = 0.35897 0.03078 ## TweakHbondSubtree 0 2 1 / 3 = 0.33333 0.05138 ## TweakHbondSegment 0 18 10 / 34 = 0.29412 0.03832 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 6 / 21 = 0.28571 0.00097 ## OneRotamer 0 13 3 / 26 = 0.11538 0.00535 ## ClashingRotamer 0 0 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 43 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 183 = 0.09290 0.11072 ## CloseGap 0 8 8 / 134 = 0.05970 0.04926 ## HealGap 0 8 0 / 103 = 0.00000 0.00000 ## MoveGap 0 54 31 / 243 = 0.12757 0.14185 ## ReduceConstraint 0 14 4 / 187 = 0.02139 0.07431 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 507 = 0.00789 0.04194 ## InsertFragment 0 11 7 / 126 = 0.05556 0.00948 ## TwoFragment 0 3 2 / 140 = 0.01429 0.02029 ## CrossOver 1 8 3 / 81 = 0.03704 0.00331 ## CrossAndInsert 2 2 1 / 108 = 0.00926 0.00181 ## ReduceClash 0 9 7 / 178 = 0.03933 0.04622 # generation 25: best score out of 20: T0287.try5 209.57809 cost/residue, 222 clashes 0.16830 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 13 = 0.07692 0.00226 ## JiggleSegment 0 6 4 / 30 = 0.13333 0.03753 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 13 4 / 16 = 0.25000 0.00259 ## TweakPsiSubtree 0 12 4 / 15 = 0.26667 0.00131 ## TweakPsiSegment 0 15 6 / 18 = 0.33333 0.01677 ## TweakPsiPhiSubtree 2 20 8 / 26 = 0.30769 0.01458 ## TweakPsiPhiSegment 2 26 15 / 44 = 0.34091 0.03099 ## TweakHbondSubtree 0 3 1 / 6 = 0.16667 0.02569 ## TweakHbondSegment 0 21 12 / 38 = 0.31579 0.03956 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 15 6 / 22 = 0.27273 0.00092 ## OneRotamer 0 13 3 / 27 = 0.11111 0.00515 ## ClashingRotamer 0 0 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 43 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 192 = 0.08854 0.10553 ## CloseGap 0 8 8 / 137 = 0.05839 0.04818 ## HealGap 0 8 0 / 105 = 0.00000 0.00000 ## MoveGap 0 54 31 / 254 = 0.12205 0.13570 ## ReduceConstraint 0 14 4 / 191 = 0.02094 0.07275 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 521 = 0.00768 0.04081 ## InsertFragment 0 11 7 / 132 = 0.05303 0.00904 ## TwoFragment 0 3 2 / 144 = 0.01389 0.01972 ## CrossOver 1 8 3 / 86 = 0.03488 0.00312 ## CrossAndInsert 2 2 1 / 113 = 0.00885 0.00173 ## ReduceClash 0 9 7 / 186 = 0.03763 0.04423 # Closing gap before 183 next to short segment # Closing gap before 54 without wiggling. # generation 26: best score out of 20: T0287.try5 208.38188 cost/residue, 248 clashes 0.15093 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.00210 ## JiggleSegment 0 6 4 / 31 = 0.12903 0.03632 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 13 4 / 16 = 0.25000 0.00259 ## TweakPsiSubtree 0 12 4 / 15 = 0.26667 0.00131 ## TweakPsiSegment 0 19 7 / 24 = 0.29167 0.01355 ## TweakPsiPhiSubtree 2 20 9 / 30 = 0.30000 0.01272 ## TweakPsiPhiSegment 2 29 17 / 48 = 0.35417 0.02902 ## TweakHbondSubtree 0 5 2 / 9 = 0.22222 0.01718 ## TweakHbondSegment 0 21 12 / 40 = 0.30000 0.03758 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 16 6 / 24 = 0.25000 0.00085 ## OneRotamer 0 14 3 / 28 = 0.10714 0.00497 ## ClashingRotamer 0 0 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 46 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 200 = 0.08500 0.10131 ## CloseGap 0 8 8 / 141 = 0.05674 0.04681 ## HealGap 0 8 0 / 110 = 0.00000 0.00000 ## MoveGap 0 54 31 / 261 = 0.11877 0.13206 ## ReduceConstraint 0 14 4 / 198 = 0.02020 0.07018 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 538 = 0.00743 0.03952 ## InsertFragment 0 11 7 / 135 = 0.05185 0.00884 ## TwoFragment 0 3 2 / 147 = 0.01361 0.01932 ## CrossOver 1 8 3 / 89 = 0.03371 0.00301 ## CrossAndInsert 2 2 1 / 116 = 0.00862 0.00168 ## ReduceClash 0 10 8 / 195 = 0.04103 0.04832 # generation 27: best score out of 20: T0287.try5 208.33867 cost/residue, 248 clashes 0.15082 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.00210 ## JiggleSegment 0 6 4 / 35 = 0.11429 0.03217 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 13 4 / 16 = 0.25000 0.00259 ## TweakPsiSubtree 0 13 4 / 18 = 0.22222 0.00110 ## TweakPsiSegment 0 21 8 / 28 = 0.28571 0.01194 ## TweakPsiPhiSubtree 2 21 10 / 31 = 0.32258 0.01370 ## TweakPsiPhiSegment 2 30 18 / 51 = 0.35294 0.02739 ## TweakHbondSubtree 0 6 3 / 11 = 0.27273 0.01512 ## TweakHbondSegment 0 25 14 / 48 = 0.29167 0.03209 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 17 6 / 25 = 0.24000 0.00081 ## OneRotamer 0 14 3 / 28 = 0.10714 0.00497 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 47 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 206 = 0.08252 0.09836 ## CloseGap 0 8 8 / 144 = 0.05556 0.04584 ## HealGap 0 8 0 / 114 = 0.00000 0.00000 ## MoveGap 0 54 31 / 269 = 0.11524 0.12814 ## ReduceConstraint 0 14 4 / 206 = 0.01942 0.06746 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 557 = 0.00718 0.03817 ## InsertFragment 0 12 8 / 137 = 0.05839 0.01352 ## TwoFragment 0 3 2 / 152 = 0.01316 0.01868 ## CrossOver 1 9 3 / 91 = 0.03297 0.00295 ## CrossAndInsert 2 2 1 / 119 = 0.00840 0.00164 ## ReduceClash 0 10 8 / 204 = 0.03922 0.04619 # generation 28: best score out of 20: T0287.try5 208.31261 cost/residue, 249 clashes 0.15121 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.00210 ## JiggleSegment 0 8 4 / 39 = 0.10256 0.02887 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 13 4 / 16 = 0.25000 0.00259 ## TweakPsiSubtree 0 14 5 / 20 = 0.25000 0.00111 ## TweakPsiSegment 0 22 8 / 32 = 0.25000 0.01044 ## TweakPsiPhiSubtree 2 22 10 / 33 = 0.30303 0.01287 ## TweakPsiPhiSegment 2 31 20 / 54 = 0.37037 0.02633 ## TweakHbondSubtree 0 6 5 / 15 = 0.33333 0.01507 ## TweakHbondSegment 0 28 16 / 54 = 0.29630 0.03004 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 17 6 / 25 = 0.24000 0.00081 ## OneRotamer 0 14 3 / 28 = 0.10714 0.00497 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 6 0 / 47 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 208 = 0.08173 0.09742 ## CloseGap 0 8 8 / 147 = 0.05442 0.04490 ## HealGap 0 8 1 / 117 = 0.00855 0.00001 ## MoveGap 0 54 31 / 280 = 0.11071 0.12310 ## ReduceConstraint 0 14 4 / 215 = 0.01860 0.06463 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 574 = 0.00697 0.03704 ## InsertFragment 0 12 8 / 142 = 0.05634 0.01304 ## TwoFragment 0 3 2 / 158 = 0.01266 0.01797 ## CrossOver 1 11 3 / 96 = 0.03125 0.00279 ## CrossAndInsert 2 3 2 / 123 = 0.01626 0.00966 ## ReduceClash 0 11 8 / 211 = 0.03791 0.04466 # generation 29: best score out of 20: T0287.try5 208.02266 cost/residue, 248 clashes 0.15195 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.00210 ## JiggleSegment 0 8 4 / 44 = 0.09091 0.02559 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 14 4 / 17 = 0.23529 0.00244 ## TweakPsiSubtree 0 15 5 / 21 = 0.23810 0.00106 ## TweakPsiSegment 0 22 8 / 32 = 0.25000 0.01044 ## TweakPsiPhiSubtree 2 24 13 / 38 = 0.34211 0.02217 ## TweakPsiPhiSegment 2 32 21 / 56 = 0.37500 0.02540 ## TweakHbondSubtree 0 8 7 / 19 = 0.36842 0.02464 ## TweakHbondSegment 0 29 16 / 57 = 0.28070 0.02846 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 17 6 / 25 = 0.24000 0.00081 ## OneRotamer 0 15 3 / 29 = 0.10345 0.00480 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 7 0 / 49 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 214 = 0.07944 0.09468 ## CloseGap 0 8 8 / 154 = 0.05195 0.04286 ## HealGap 0 9 2 / 124 = 0.01613 0.00002 ## MoveGap 0 54 31 / 292 = 0.10616 0.11804 ## ReduceConstraint 0 14 4 / 215 = 0.01860 0.06463 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 591 = 0.00677 0.03598 ## InsertFragment 0 12 8 / 148 = 0.05405 0.01251 ## TwoFragment 0 3 2 / 164 = 0.01220 0.01732 ## CrossOver 2 12 3 / 98 = 0.03061 0.00274 ## CrossAndInsert 3 3 2 / 127 = 0.01575 0.00936 ## ReduceClash 0 11 8 / 215 = 0.03721 0.04383 # Closing gap before 54 # generation 30: best score out of 20: T0287.try5 207.85229 cost/residue, 250 clashes 0.15652 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.00210 ## JiggleSegment 0 10 6 / 49 = 0.12245 0.03384 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 14 4 / 17 = 0.23529 0.00244 ## TweakPsiSubtree 0 15 5 / 21 = 0.23810 0.00106 ## TweakPsiSegment 0 23 8 / 36 = 0.22222 0.00928 ## TweakPsiPhiSubtree 2 26 13 / 41 = 0.31707 0.02055 ## TweakPsiPhiSegment 2 34 21 / 60 = 0.35000 0.02370 ## TweakHbondSubtree 0 13 9 / 32 = 0.28125 0.01675 ## TweakHbondSegment 0 31 17 / 63 = 0.26984 0.02583 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 17 6 / 25 = 0.24000 0.00081 ## OneRotamer 0 16 3 / 30 = 0.10000 0.00464 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 7 0 / 50 = 0.00000 0.00000 ## ReduceBreak 1 25 17 / 220 = 0.07727 0.09210 ## CloseGap 0 8 8 / 161 = 0.04969 0.04100 ## HealGap 0 9 2 / 127 = 0.01575 0.00002 ## MoveGap 0 54 31 / 297 = 0.10438 0.11606 ## ReduceConstraint 0 14 4 / 222 = 0.01802 0.06259 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 605 = 0.00661 0.03515 ## InsertFragment 0 12 8 / 153 = 0.05229 0.01211 ## TwoFragment 0 3 2 / 171 = 0.01170 0.01661 ## CrossOver 2 12 3 / 99 = 0.03030 0.00271 ## CrossAndInsert 3 3 2 / 131 = 0.01527 0.00907 ## ReduceClash 0 11 8 / 219 = 0.03653 0.04303 # generation 31: best score out of 20: T0287.try5 207.47211 cost/residue, 242 clashes 0.15286 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 14 = 0.07143 0.00327 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.00210 ## JiggleSegment 0 12 8 / 55 = 0.14545 0.04217 ## OptSubtree 0 1 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 15 5 / 21 = 0.23810 0.00106 ## TweakPsiSegment 0 23 8 / 36 = 0.22222 0.00928 ## TweakPsiPhiSubtree 5 28 13 / 44 = 0.29545 0.01915 ## TweakPsiPhiSegment 2 34 21 / 62 = 0.33871 0.02294 ## TweakHbondSubtree 0 15 10 / 35 = 0.28571 0.01652 ## TweakHbondSegment 0 33 18 / 67 = 0.26866 0.02537 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 18 7 / 27 = 0.25926 0.00077 ## OneRotamer 0 16 3 / 31 = 0.09677 0.00449 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 7 0 / 50 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 228 = 0.07895 0.08932 ## CloseGap 0 8 8 / 172 = 0.04651 0.03838 ## HealGap 0 9 2 / 128 = 0.01562 0.00002 ## MoveGap 0 54 31 / 308 = 0.10065 0.11191 ## ReduceConstraint 0 14 4 / 225 = 0.01778 0.06176 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 621 = 0.00644 0.03424 ## InsertFragment 0 12 8 / 162 = 0.04938 0.01143 ## TwoFragment 0 3 2 / 178 = 0.01124 0.01596 ## CrossOver 2 12 3 / 99 = 0.03030 0.00271 ## CrossAndInsert 3 3 2 / 136 = 0.01471 0.00874 ## ReduceClash 0 11 8 / 223 = 0.03587 0.04225 # Closing gap before 21 without wiggling. # Closing gap before 102 # generation 32: best score out of 20: T0287.try5 207.20085 cost/residue, 243 clashes 0.15286 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 15 = 0.06667 0.00305 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.00210 ## JiggleSegment 0 14 9 / 65 = 0.13846 0.04573 ## OptSubtree 0 1 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 15 5 / 21 = 0.23810 0.00106 ## TweakPsiSegment 0 24 8 / 38 = 0.21053 0.00880 ## TweakPsiPhiSubtree 5 30 14 / 48 = 0.29167 0.01757 ## TweakPsiPhiSegment 2 36 22 / 64 = 0.34375 0.02448 ## TweakHbondSubtree 0 16 10 / 37 = 0.27027 0.01563 ## TweakHbondSegment 0 35 20 / 69 = 0.28986 0.02868 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 18 7 / 27 = 0.25926 0.00077 ## OneRotamer 0 17 4 / 32 = 0.12500 0.01283 ## ClashingRotamer 0 0 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 0 7 0 / 51 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 236 = 0.07627 0.08629 ## CloseGap 0 9 10 / 182 = 0.05495 0.03688 ## HealGap 0 9 2 / 130 = 0.01538 0.00002 ## MoveGap 0 55 31 / 320 = 0.09688 0.10771 ## ReduceConstraint 0 14 4 / 230 = 0.01739 0.06042 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 631 = 0.00634 0.03370 ## InsertFragment 0 12 8 / 168 = 0.04762 0.01102 ## TwoFragment 0 3 2 / 181 = 0.01105 0.01569 ## CrossOver 2 12 3 / 101 = 0.02970 0.00266 ## CrossAndInsert 3 3 2 / 141 = 0.01418 0.00843 ## ReduceClash 0 11 8 / 231 = 0.03463 0.04079 # generation 33: best score out of 20: T0287.try5 206.98149 cost/residue, 239 clashes 0.15705 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 17 = 0.05882 0.00270 ## JiggleSubtree 0 5 1 / 15 = 0.06667 0.00196 ## JiggleSegment 0 15 10 / 71 = 0.14085 0.04496 ## OptSubtree 0 1 0 / 35 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 16 6 / 23 = 0.26087 0.00097 ## TweakPsiSegment 0 25 9 / 39 = 0.23077 0.00861 ## TweakPsiPhiSubtree 5 31 14 / 50 = 0.28000 0.01686 ## TweakPsiPhiSegment 2 38 22 / 67 = 0.32836 0.02338 ## TweakHbondSubtree 0 16 10 / 39 = 0.25641 0.01483 ## TweakHbondSegment 0 37 20 / 77 = 0.25974 0.02570 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 18 7 / 27 = 0.25926 0.00077 ## OneRotamer 0 19 4 / 36 = 0.11111 0.01140 ## ClashingRotamer 0 0 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 0 7 0 / 53 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 241 = 0.07469 0.08450 ## CloseGap 0 9 10 / 184 = 0.05435 0.03647 ## HealGap 0 10 3 / 139 = 0.02158 0.00003 ## MoveGap 0 55 31 / 327 = 0.09480 0.10541 ## ReduceConstraint 0 14 4 / 235 = 0.01702 0.05913 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 647 = 0.00618 0.03286 ## InsertFragment 0 12 8 / 169 = 0.04734 0.01096 ## TwoFragment 0 3 2 / 186 = 0.01075 0.01527 ## CrossOver 2 12 3 / 101 = 0.02970 0.00266 ## CrossAndInsert 3 4 2 / 147 = 0.01361 0.00808 ## ReduceClash 0 11 8 / 239 = 0.03347 0.03943 # Closing gap before 171 without wiggling. # generation 34: best score out of 20: T0287.try5 206.93500 cost/residue, 235 clashes 0.15290 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 19 = 0.05263 0.00241 ## JiggleSubtree 0 5 1 / 15 = 0.06667 0.00196 ## JiggleSegment 0 15 10 / 78 = 0.12821 0.04092 ## OptSubtree 0 2 1 / 37 = 0.02703 0.01011 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 16 7 / 25 = 0.28000 0.00205 ## TweakPsiSegment 0 26 10 / 40 = 0.25000 0.00999 ## TweakPsiPhiSubtree 5 32 15 / 53 = 0.28302 0.01621 ## TweakPsiPhiSegment 2 42 23 / 74 = 0.31081 0.02270 ## TweakHbondSubtree 0 20 14 / 45 = 0.31111 0.01555 ## TweakHbondSegment 0 37 21 / 80 = 0.26250 0.02507 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 18 7 / 27 = 0.25926 0.00077 ## OneRotamer 0 22 6 / 47 = 0.12766 0.01986 ## ClashingRotamer 0 0 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 0 7 0 / 53 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 244 = 0.07377 0.08346 ## CloseGap 0 9 10 / 188 = 0.05319 0.03570 ## HealGap 0 10 3 / 144 = 0.02083 0.00003 ## MoveGap 0 55 31 / 334 = 0.09281 0.10320 ## ReduceConstraint 0 14 4 / 241 = 0.01660 0.05766 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 659 = 0.00607 0.03227 ## InsertFragment 0 12 8 / 174 = 0.04598 0.01064 ## TwoFragment 0 3 2 / 189 = 0.01058 0.01503 ## CrossOver 2 12 3 / 102 = 0.02941 0.00263 ## CrossAndInsert 3 4 2 / 152 = 0.01316 0.00782 ## ReduceClash 0 11 8 / 244 = 0.03279 0.03862 # Closing gap before 107 next to short segment # generation 35: best score out of 20: T0287.try5 206.76602 cost/residue, 233 clashes 0.15710 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 1 / 20 = 0.05000 0.00229 ## JiggleSubtree 0 5 1 / 15 = 0.06667 0.00196 ## JiggleSegment 0 17 11 / 87 = 0.12644 0.03858 ## OptSubtree 0 2 1 / 45 = 0.02222 0.00831 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 3 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 17 8 / 28 = 0.28571 0.00189 ## TweakPsiSegment 0 26 10 / 40 = 0.25000 0.00999 ## TweakPsiPhiSubtree 5 33 15 / 54 = 0.27778 0.01591 ## TweakPsiPhiSegment 2 43 23 / 77 = 0.29870 0.02182 ## TweakHbondSubtree 0 20 14 / 48 = 0.29167 0.01458 ## TweakHbondSegment 0 39 21 / 82 = 0.25610 0.02446 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 18 7 / 27 = 0.25926 0.00077 ## OneRotamer 0 25 6 / 55 = 0.10909 0.01697 ## ClashingRotamer 0 1 1 / 24 = 0.04167 0.01058 ## ClusteredRotamer 0 7 0 / 55 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 247 = 0.07287 0.08245 ## CloseGap 0 9 10 / 191 = 0.05236 0.03514 ## HealGap 0 10 3 / 147 = 0.02041 0.00003 ## MoveGap 0 55 31 / 341 = 0.09091 0.10108 ## ReduceConstraint 0 14 4 / 248 = 0.01613 0.05603 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 670 = 0.00597 0.03174 ## InsertFragment 0 12 8 / 180 = 0.04444 0.01029 ## TwoFragment 0 3 2 / 197 = 0.01015 0.01442 ## CrossOver 2 12 3 / 103 = 0.02913 0.00260 ## CrossAndInsert 3 4 2 / 156 = 0.01282 0.00762 ## ReduceClash 0 11 8 / 248 = 0.03226 0.03799 # generation 36: best score out of 20: T0287.try5 206.26462 cost/residue, 232 clashes 0.15081 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 1 / 20 = 0.05000 0.00229 ## JiggleSubtree 0 5 1 / 15 = 0.06667 0.00196 ## JiggleSegment 0 18 11 / 90 = 0.12222 0.03730 ## OptSubtree 0 3 1 / 47 = 0.02128 0.00796 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 4 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 18 8 / 29 = 0.27586 0.00182 ## TweakPsiSegment 0 26 10 / 40 = 0.25000 0.00999 ## TweakPsiPhiSubtree 5 34 15 / 55 = 0.27273 0.01562 ## TweakPsiPhiSegment 3 45 23 / 80 = 0.28750 0.02100 ## TweakHbondSubtree 0 21 14 / 50 = 0.28000 0.01400 ## TweakHbondSegment 0 41 22 / 84 = 0.26190 0.02393 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 28 = 0.28571 0.00076 ## OneRotamer 0 25 6 / 60 = 0.10000 0.01556 ## ClashingRotamer 0 1 1 / 34 = 0.02941 0.00747 ## ClusteredRotamer 0 7 0 / 56 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 252 = 0.07143 0.08081 ## CloseGap 0 9 10 / 197 = 0.05076 0.03407 ## HealGap 0 11 4 / 149 = 0.02685 0.00339 ## MoveGap 0 55 31 / 352 = 0.08807 0.09792 ## ReduceConstraint 0 14 4 / 256 = 0.01562 0.05428 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 680 = 0.00588 0.03127 ## InsertFragment 0 12 8 / 187 = 0.04278 0.00990 ## TwoFragment 0 3 2 / 199 = 0.01005 0.01427 ## CrossOver 2 12 3 / 103 = 0.02913 0.00260 ## CrossAndInsert 3 4 2 / 163 = 0.01227 0.00729 ## ReduceClash 0 12 8 / 257 = 0.03113 0.03666 # Closing gap before 104 next to short segment # generation 37: best score out of 20: T0287.try5 205.25110 cost/residue, 233 clashes 0.15710 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 1 / 20 = 0.05000 0.00229 ## JiggleSubtree 0 5 1 / 15 = 0.06667 0.00196 ## JiggleSegment 0 19 11 / 96 = 0.11458 0.03496 ## OptSubtree 1 3 1 / 47 = 0.02128 0.00796 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 4 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 18 8 / 30 = 0.26667 0.00176 ## TweakPsiSegment 0 27 11 / 44 = 0.25000 0.00916 ## TweakPsiPhiSubtree 5 37 18 / 61 = 0.29508 0.01667 ## TweakPsiPhiSegment 3 46 23 / 81 = 0.28395 0.02074 ## TweakHbondSubtree 0 24 16 / 53 = 0.30189 0.01355 ## TweakHbondSegment 0 42 23 / 87 = 0.26437 0.02311 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 28 = 0.28571 0.00076 ## OneRotamer 0 27 6 / 65 = 0.09231 0.01436 ## ClashingRotamer 0 1 1 / 38 = 0.02632 0.00668 ## ClusteredRotamer 0 7 0 / 57 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 256 = 0.07031 0.07955 ## CloseGap 0 9 10 / 202 = 0.04950 0.03322 ## HealGap 0 11 4 / 152 = 0.02632 0.00333 ## MoveGap 0 55 31 / 360 = 0.08611 0.09575 ## ReduceConstraint 0 14 4 / 261 = 0.01533 0.05324 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 692 = 0.00723 0.03292 ## InsertFragment 0 12 8 / 189 = 0.04233 0.00980 ## TwoFragment 0 3 2 / 202 = 0.00990 0.01406 ## CrossOver 2 12 3 / 107 = 0.02804 0.00251 ## CrossAndInsert 3 4 2 / 170 = 0.01176 0.00699 ## ReduceClash 0 12 8 / 268 = 0.02985 0.03516 # Closing gap before 107 next to short segment # generation 38: best score out of 20: T0287.try5 205.22458 cost/residue, 232 clashes 0.15757 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 1 / 20 = 0.05000 0.00229 ## JiggleSubtree 0 5 1 / 16 = 0.06250 0.00184 ## JiggleSegment 0 21 11 / 102 = 0.10784 0.03291 ## OptSubtree 1 3 1 / 49 = 0.02041 0.00763 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 4 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 18 9 / 31 = 0.29032 0.00282 ## TweakPsiSegment 0 29 13 / 49 = 0.26531 0.00916 ## TweakPsiPhiSubtree 6 38 19 / 65 = 0.29231 0.01828 ## TweakPsiPhiSegment 3 48 24 / 84 = 0.28571 0.02305 ## TweakHbondSubtree 0 29 18 / 59 = 0.30508 0.01264 ## TweakHbondSegment 0 42 23 / 90 = 0.25556 0.02234 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 29 = 0.27586 0.00073 ## OneRotamer 0 28 7 / 68 = 0.10294 0.01397 ## ClashingRotamer 0 1 1 / 39 = 0.02564 0.00651 ## ClusteredRotamer 0 7 0 / 57 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 261 = 0.06897 0.07803 ## CloseGap 0 9 10 / 209 = 0.04785 0.03211 ## HealGap 0 11 4 / 160 = 0.02500 0.00316 ## MoveGap 0 55 31 / 368 = 0.08424 0.09366 ## ReduceConstraint 0 15 5 / 265 = 0.01887 0.05361 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 707 = 0.00707 0.03222 ## InsertFragment 0 12 8 / 191 = 0.04188 0.00970 ## TwoFragment 0 3 2 / 205 = 0.00976 0.01385 ## CrossOver 2 12 3 / 110 = 0.02727 0.00244 ## CrossAndInsert 3 4 2 / 174 = 0.01149 0.00683 ## ReduceClash 0 12 8 / 273 = 0.02930 0.03452 # generation 39: best score out of 20: T0287.try5 205.12874 cost/residue, 231 clashes 0.15852 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 22 = 0.04545 0.00208 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00173 ## JiggleSegment 0 22 12 / 109 = 0.11009 0.03331 ## OptSubtree 1 3 1 / 54 = 0.01852 0.00693 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 8 = 0.12500 0.00000 ## TweakPhiSegment 4 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 19 10 / 32 = 0.31250 0.00277 ## TweakPsiSegment 0 30 13 / 51 = 0.25490 0.00881 ## TweakPsiPhiSubtree 7 40 19 / 68 = 0.27941 0.01747 ## TweakPsiPhiSegment 3 53 26 / 93 = 0.27957 0.02189 ## TweakHbondSubtree 0 30 18 / 62 = 0.29032 0.01203 ## TweakHbondSegment 0 42 24 / 94 = 0.25532 0.02163 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 19 8 / 29 = 0.27586 0.00073 ## OneRotamer 0 29 7 / 70 = 0.10000 0.01357 ## ClashingRotamer 0 1 1 / 42 = 0.02381 0.00604 ## ClusteredRotamer 0 7 0 / 58 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 262 = 0.06870 0.07773 ## CloseGap 0 9 10 / 212 = 0.04717 0.03166 ## HealGap 0 11 4 / 163 = 0.02454 0.00310 ## MoveGap 0 55 31 / 376 = 0.08245 0.09167 ## ReduceConstraint 0 15 5 / 268 = 0.01866 0.05301 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 727 = 0.00688 0.03133 ## InsertFragment 0 12 8 / 195 = 0.04103 0.00950 ## TwoFragment 0 3 2 / 209 = 0.00957 0.01359 ## CrossOver 2 12 3 / 112 = 0.02679 0.00240 ## CrossAndInsert 3 4 2 / 180 = 0.01111 0.00660 ## ReduceClash 0 12 8 / 275 = 0.02909 0.03426 # Closing gap before 107 next to short segment # generation 40: best score out of 20: T0287.try5 204.72192 cost/residue, 231 clashes 0.15127 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 22 = 0.04545 0.00208 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00173 ## JiggleSegment 0 22 12 / 113 = 0.10619 0.03213 ## OptSubtree 1 4 2 / 58 = 0.03448 0.01418 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 2 / 9 = 0.22222 0.00000 ## TweakPhiSegment 4 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 21 10 / 35 = 0.28571 0.00253 ## TweakPsiSegment 0 31 14 / 52 = 0.26923 0.00905 ## TweakPsiPhiSubtree 9 42 20 / 72 = 0.27778 0.01692 ## TweakPsiPhiSegment 4 54 27 / 96 = 0.28125 0.02162 ## TweakHbondSubtree 0 31 18 / 65 = 0.27692 0.01147 ## TweakHbondSegment 0 42 24 / 97 = 0.24742 0.02096 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 10 / 32 = 0.31250 0.00070 ## OneRotamer 0 29 7 / 72 = 0.09722 0.01319 ## ClashingRotamer 0 1 1 / 44 = 0.02273 0.00577 ## ClusteredRotamer 0 7 0 / 58 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 268 = 0.06716 0.07599 ## CloseGap 0 9 10 / 216 = 0.04630 0.03107 ## HealGap 0 12 5 / 171 = 0.02924 0.00595 ## MoveGap 0 55 31 / 383 = 0.08094 0.09000 ## ReduceConstraint 0 15 5 / 278 = 0.01799 0.05111 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 738 = 0.00678 0.03086 ## InsertFragment 0 12 8 / 199 = 0.04020 0.00931 ## TwoFragment 0 3 2 / 214 = 0.00935 0.01327 ## CrossOver 2 12 3 / 116 = 0.02586 0.00231 ## CrossAndInsert 3 4 2 / 184 = 0.01087 0.00646 ## ReduceClash 0 12 8 / 278 = 0.02878 0.03389 # Closing gap before 107 next to short segment # generation 41: best score out of 20: T0287.try5 204.58983 cost/residue, 237 clashes 0.15778 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00173 ## JiggleSegment 0 24 13 / 118 = 0.11017 0.03189 ## OptSubtree 1 4 2 / 67 = 0.02985 0.01228 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 2 / 9 = 0.22222 0.00000 ## TweakPhiSegment 4 14 4 / 18 = 0.22222 0.00230 ## TweakPsiSubtree 0 21 10 / 38 = 0.26316 0.00233 ## TweakPsiSegment 0 32 14 / 56 = 0.25000 0.00841 ## TweakPsiPhiSubtree 10 44 22 / 74 = 0.29730 0.01807 ## TweakPsiPhiSegment 4 56 28 / 102 = 0.27451 0.02100 ## TweakHbondSubtree 0 32 18 / 66 = 0.27273 0.01130 ## TweakHbondSegment 0 42 24 / 102 = 0.23529 0.01993 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 10 / 34 = 0.29412 0.00066 ## OneRotamer 0 30 7 / 77 = 0.09091 0.01234 ## ClashingRotamer 0 1 1 / 45 = 0.02222 0.00564 ## ClusteredRotamer 0 7 0 / 60 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 271 = 0.06642 0.07515 ## CloseGap 0 9 10 / 220 = 0.04545 0.03051 ## HealGap 0 13 5 / 173 = 0.02890 0.00588 ## MoveGap 0 55 31 / 389 = 0.07969 0.08861 ## ReduceConstraint 0 15 5 / 280 = 0.01786 0.05074 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 751 = 0.00666 0.03033 ## InsertFragment 0 13 8 / 200 = 0.04000 0.00926 ## TwoFragment 0 3 2 / 219 = 0.00913 0.01297 ## CrossOver 3 12 3 / 119 = 0.02521 0.00225 ## CrossAndInsert 4 4 2 / 187 = 0.01070 0.00636 ## ReduceClash 0 12 8 / 288 = 0.02778 0.03272 # generation 42: best score out of 20: T0287.try5 204.53062 cost/residue, 237 clashes 0.15763 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00173 ## JiggleSegment 0 24 13 / 121 = 0.10744 0.03110 ## OptSubtree 1 4 2 / 75 = 0.02667 0.01097 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 3 / 10 = 0.30000 0.00390 ## TweakPhiSegment 4 15 4 / 19 = 0.21053 0.00218 ## TweakPsiSubtree 0 23 11 / 40 = 0.27500 0.00295 ## TweakPsiSegment 0 33 15 / 59 = 0.25424 0.00982 ## TweakPsiPhiSubtree 10 47 23 / 81 = 0.28395 0.01853 ## TweakPsiPhiSegment 4 57 28 / 104 = 0.26923 0.02060 ## TweakHbondSubtree 0 34 20 / 70 = 0.28571 0.01338 ## TweakHbondSegment 0 43 25 / 106 = 0.23585 0.01932 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 11 / 35 = 0.31429 0.00066 ## OneRotamer 0 30 7 / 79 = 0.08861 0.01203 ## ClashingRotamer 0 1 1 / 46 = 0.02174 0.00552 ## ClusteredRotamer 0 7 0 / 62 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 276 = 0.06522 0.07379 ## CloseGap 0 9 10 / 222 = 0.04505 0.03023 ## HealGap 0 14 5 / 181 = 0.02762 0.00562 ## MoveGap 0 55 31 / 398 = 0.07789 0.08660 ## ReduceConstraint 0 16 6 / 286 = 0.02098 0.05085 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 759 = 0.00659 0.03001 ## InsertFragment 0 13 8 / 207 = 0.03865 0.00895 ## TwoFragment 0 3 2 / 220 = 0.00909 0.01291 ## CrossOver 3 12 3 / 120 = 0.02500 0.00224 ## CrossAndInsert 4 4 2 / 193 = 0.01036 0.00616 ## ReduceClash 0 12 8 / 294 = 0.02721 0.03205 # Closing gap before 107 next to short segment # generation 43: best score out of 20: T0287.try5 204.41750 cost/residue, 232 clashes 0.15263 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00173 ## JiggleSegment 0 24 13 / 125 = 0.10400 0.03010 ## OptSubtree 1 4 2 / 80 = 0.02500 0.01028 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00411 ## TweakPhiSegment 4 15 4 / 19 = 0.21053 0.00218 ## TweakPsiSubtree 0 24 12 / 43 = 0.27907 0.00315 ## TweakPsiSegment 0 34 16 / 60 = 0.26667 0.00966 ## TweakPsiPhiSubtree 10 50 25 / 87 = 0.28736 0.01794 ## TweakPsiPhiSegment 5 59 30 / 110 = 0.27273 0.02082 ## TweakHbondSubtree 0 35 21 / 71 = 0.29577 0.01344 ## TweakHbondSegment 0 44 25 / 107 = 0.23364 0.01914 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 23 11 / 37 = 0.29730 0.00062 ## OneRotamer 0 30 7 / 83 = 0.08434 0.01145 ## ClashingRotamer 0 1 1 / 46 = 0.02174 0.00552 ## ClusteredRotamer 0 7 0 / 67 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 283 = 0.06360 0.07196 ## CloseGap 0 9 10 / 225 = 0.04444 0.02983 ## HealGap 0 14 5 / 186 = 0.02688 0.00547 ## MoveGap 0 55 31 / 405 = 0.07654 0.08511 ## ReduceConstraint 0 16 6 / 290 = 0.02069 0.05015 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 768 = 0.00651 0.02966 ## InsertFragment 0 13 8 / 211 = 0.03791 0.00878 ## TwoFragment 0 3 2 / 224 = 0.00893 0.01268 ## CrossOver 3 13 4 / 124 = 0.03226 0.00216 ## CrossAndInsert 4 4 2 / 195 = 0.01026 0.00609 ## ReduceClash 0 12 8 / 299 = 0.02676 0.03151 # generation 44: best score out of 20: T0287.try5 204.11954 cost/residue, 229 clashes 0.16191 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 7 2 / 18 = 0.11111 0.02298 ## JiggleSegment 0 25 14 / 132 = 0.10606 0.03126 ## OptSubtree 1 4 2 / 86 = 0.02326 0.00957 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 0 13 5 / 18 = 0.27778 0.00366 ## TweakPhiSegment 4 15 4 / 19 = 0.21053 0.00218 ## TweakPsiSubtree 0 25 13 / 44 = 0.29545 0.00338 ## TweakPsiSegment 0 36 18 / 67 = 0.26866 0.01113 ## TweakPsiPhiSubtree 12 52 26 / 93 = 0.27957 0.01782 ## TweakPsiPhiSegment 5 59 30 / 112 = 0.26786 0.02045 ## TweakHbondSubtree 0 36 22 / 73 = 0.30137 0.01537 ## TweakHbondSegment 0 45 26 / 109 = 0.23853 0.01879 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 24 11 / 38 = 0.28947 0.00061 ## OneRotamer 0 31 8 / 84 = 0.09524 0.01408 ## ClashingRotamer 0 1 1 / 48 = 0.02083 0.00529 ## ClusteredRotamer 0 7 0 / 68 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 288 = 0.06250 0.07071 ## CloseGap 0 9 10 / 228 = 0.04386 0.02944 ## HealGap 0 14 5 / 191 = 0.02618 0.00533 ## MoveGap 0 56 31 / 413 = 0.07506 0.08346 ## ReduceConstraint 0 16 6 / 294 = 0.02041 0.04947 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 781 = 0.00640 0.02916 ## InsertFragment 0 13 8 / 217 = 0.03687 0.00854 ## TwoFragment 0 3 2 / 228 = 0.00877 0.01246 ## CrossOver 3 13 4 / 129 = 0.03101 0.00208 ## CrossAndInsert 4 4 2 / 196 = 0.01020 0.00606 ## ReduceClash 0 12 8 / 303 = 0.02640 0.03110 # generation 45: best score out of 20: T0287.try5 203.26602 cost/residue, 229 clashes 0.15444 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 12 7 / 37 = 0.18919 0.05803 ## JiggleSegment 0 26 14 / 141 = 0.09929 0.02926 ## OptSubtree 1 4 2 / 89 = 0.02247 0.00924 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 5 / 19 = 0.26316 0.00346 ## TweakPhiSegment 4 15 4 / 19 = 0.21053 0.00218 ## TweakPsiSubtree 0 26 15 / 47 = 0.31915 0.00339 ## TweakPsiSegment 0 36 18 / 67 = 0.26866 0.01113 ## TweakPsiPhiSubtree 12 54 27 / 96 = 0.28125 0.01736 ## TweakPsiPhiSegment 6 62 31 / 118 = 0.26271 0.01957 ## TweakHbondSubtree 0 38 24 / 76 = 0.31579 0.01738 ## TweakHbondSegment 0 46 26 / 111 = 0.23423 0.01845 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 11 / 39 = 0.28205 0.00059 ## OneRotamer 0 31 8 / 86 = 0.09302 0.01375 ## ClashingRotamer 0 1 1 / 49 = 0.02041 0.00518 ## ClusteredRotamer 0 7 0 / 68 = 0.00000 0.00000 ## ReduceBreak 1 26 18 / 292 = 0.06164 0.06974 ## CloseGap 0 9 10 / 231 = 0.04329 0.02905 ## HealGap 0 14 5 / 199 = 0.02513 0.00511 ## MoveGap 0 56 31 / 417 = 0.07434 0.08266 ## ReduceConstraint 0 16 6 / 297 = 0.02020 0.04897 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 789 = 0.00634 0.02887 ## InsertFragment 0 13 8 / 219 = 0.03653 0.00846 ## TwoFragment 0 3 2 / 230 = 0.00870 0.01235 ## CrossOver 3 13 4 / 131 = 0.03053 0.00205 ## CrossAndInsert 4 4 2 / 199 = 0.01005 0.00597 ## ReduceClash 0 12 8 / 309 = 0.02589 0.03049 # generation 46: best score out of 20: T0287.try5 203.05356 cost/residue, 222 clashes 0.15694 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 14 8 / 49 = 0.16327 0.04816 ## JiggleSegment 0 27 15 / 145 = 0.10345 0.02942 ## OptSubtree 1 4 2 / 92 = 0.02174 0.00894 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 5 / 21 = 0.23810 0.00313 ## TweakPhiSegment 4 15 4 / 19 = 0.21053 0.00218 ## TweakPsiSubtree 0 27 17 / 54 = 0.31481 0.00353 ## TweakPsiSegment 0 37 18 / 69 = 0.26087 0.01080 ## TweakPsiPhiSubtree 13 57 27 / 103 = 0.26214 0.01618 ## TweakPsiPhiSegment 6 63 31 / 121 = 0.25620 0.01909 ## TweakHbondSubtree 0 40 24 / 79 = 0.30380 0.01672 ## TweakHbondSegment 0 46 26 / 112 = 0.23214 0.01829 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 11 / 39 = 0.28205 0.00059 ## OneRotamer 0 32 8 / 90 = 0.08889 0.01314 ## ClashingRotamer 0 1 1 / 49 = 0.02041 0.00518 ## ClusteredRotamer 0 7 0 / 72 = 0.00000 0.00000 ## ReduceBreak 1 27 19 / 295 = 0.06441 0.07044 ## CloseGap 0 9 10 / 234 = 0.04274 0.02868 ## HealGap 0 14 5 / 205 = 0.02439 0.00496 ## MoveGap 0 56 31 / 419 = 0.07399 0.08226 ## ReduceConstraint 0 16 6 / 308 = 0.01948 0.04722 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 801 = 0.00624 0.02844 ## InsertFragment 0 13 8 / 221 = 0.03620 0.00838 ## TwoFragment 0 3 2 / 233 = 0.00858 0.01219 ## CrossOver 3 14 4 / 132 = 0.03030 0.00203 ## CrossAndInsert 4 4 2 / 201 = 0.00995 0.00591 ## ReduceClash 0 12 8 / 311 = 0.02572 0.03030 # Closing gap before 54 without wiggling. # generation 47: best score out of 20: T0287.try5 202.78102 cost/residue, 227 clashes 0.15643 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 15 9 / 68 = 0.13235 0.03871 ## JiggleSegment 0 28 16 / 151 = 0.10596 0.02850 ## OptSubtree 1 4 2 / 92 = 0.02174 0.00894 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 15 6 / 22 = 0.27273 0.00406 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 28 18 / 57 = 0.31579 0.00338 ## TweakPsiSegment 0 40 18 / 72 = 0.25000 0.01035 ## TweakPsiPhiSubtree 14 58 27 / 106 = 0.25472 0.01572 ## TweakPsiPhiSegment 6 64 31 / 123 = 0.25203 0.01878 ## TweakHbondSubtree 0 41 24 / 84 = 0.28571 0.01572 ## TweakHbondSegment 0 48 29 / 116 = 0.25000 0.02342 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 12 / 40 = 0.30000 0.00059 ## OneRotamer 0 32 8 / 91 = 0.08791 0.01299 ## ClashingRotamer 0 1 1 / 50 = 0.02000 0.00508 ## ClusteredRotamer 0 7 0 / 72 = 0.00000 0.00000 ## ReduceBreak 1 27 19 / 304 = 0.06250 0.06835 ## CloseGap 0 9 10 / 236 = 0.04237 0.02844 ## HealGap 0 14 5 / 205 = 0.02439 0.00496 ## MoveGap 0 56 31 / 423 = 0.07329 0.08149 ## ReduceConstraint 0 16 6 / 312 = 0.01923 0.04661 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 812 = 0.00616 0.02805 ## InsertFragment 0 13 8 / 223 = 0.03587 0.00831 ## TwoFragment 0 3 2 / 236 = 0.00847 0.01203 ## CrossOver 3 17 5 / 137 = 0.03650 0.00400 ## CrossAndInsert 4 4 2 / 204 = 0.00980 0.00583 ## ReduceClash 0 12 8 / 315 = 0.02540 0.02991 # generation 48: best score out of 20: T0287.try5 202.64668 cost/residue, 224 clashes 0.15531 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 17 10 / 77 = 0.12987 0.03762 ## JiggleSegment 0 28 16 / 155 = 0.10323 0.02777 ## OptSubtree 1 4 2 / 93 = 0.02151 0.00885 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 16 7 / 26 = 0.26923 0.00860 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 29 18 / 58 = 0.31034 0.00332 ## TweakPsiSegment 0 41 19 / 78 = 0.24359 0.00968 ## TweakPsiPhiSubtree 14 59 28 / 107 = 0.26168 0.01558 ## TweakPsiPhiSegment 7 65 32 / 125 = 0.25600 0.01860 ## TweakHbondSubtree 0 42 24 / 85 = 0.28235 0.01554 ## TweakHbondSegment 0 52 30 / 125 = 0.24000 0.02197 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 12 / 42 = 0.28571 0.00056 ## OneRotamer 0 32 8 / 93 = 0.08602 0.01272 ## ClashingRotamer 0 1 1 / 54 = 0.01852 0.00470 ## ClusteredRotamer 0 7 0 / 72 = 0.00000 0.00000 ## ReduceBreak 1 27 19 / 310 = 0.06129 0.06703 ## CloseGap 0 9 10 / 238 = 0.04202 0.02820 ## HealGap 0 14 5 / 207 = 0.02415 0.00491 ## MoveGap 0 56 31 / 430 = 0.07209 0.08016 ## ReduceConstraint 0 16 6 / 318 = 0.01887 0.04573 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 823 = 0.00608 0.02768 ## InsertFragment 0 13 8 / 228 = 0.03509 0.00812 ## TwoFragment 0 3 2 / 236 = 0.00847 0.01203 ## CrossOver 3 17 5 / 140 = 0.03571 0.00391 ## CrossAndInsert 4 4 2 / 209 = 0.00957 0.00569 ## ReduceClash 0 12 8 / 321 = 0.02492 0.02935 # Closing gap before 107 next to short segment # generation 49: best score out of 20: T0287.try5 202.64668 cost/residue, 224 clashes 0.15531 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 23 = 0.04348 0.00199 ## JiggleSubtree 0 18 10 / 82 = 0.12195 0.03533 ## JiggleSegment 0 28 16 / 158 = 0.10127 0.02724 ## OptSubtree 1 4 2 / 97 = 0.02062 0.00848 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 1 19 8 / 32 = 0.25000 0.00701 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 29 18 / 58 = 0.31034 0.00332 ## TweakPsiSegment 0 41 19 / 79 = 0.24051 0.00956 ## TweakPsiPhiSubtree 14 63 28 / 111 = 0.25225 0.01502 ## TweakPsiPhiSegment 8 65 32 / 125 = 0.25600 0.01860 ## TweakHbondSubtree 0 42 24 / 86 = 0.27907 0.01536 ## TweakHbondSegment 0 55 31 / 132 = 0.23485 0.02150 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 12 / 42 = 0.28571 0.00056 ## OneRotamer 0 32 8 / 94 = 0.08511 0.01258 ## ClashingRotamer 0 1 1 / 54 = 0.01852 0.00470 ## ClusteredRotamer 0 7 0 / 74 = 0.00000 0.00000 ## ReduceBreak 1 28 20 / 315 = 0.06349 0.06669 ## CloseGap 0 9 10 / 245 = 0.04082 0.02739 ## HealGap 0 14 5 / 210 = 0.02381 0.00484 ## MoveGap 0 56 31 / 433 = 0.07159 0.07960 ## ReduceConstraint 0 16 6 / 323 = 0.01858 0.04503 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 842 = 0.00594 0.02705 ## InsertFragment 0 13 8 / 232 = 0.03448 0.00798 ## TwoFragment 0 3 2 / 242 = 0.00826 0.01174 ## CrossOver 3 17 5 / 142 = 0.03521 0.00386 ## CrossAndInsert 4 4 2 / 212 = 0.00943 0.00561 ## ReduceClash 0 12 8 / 328 = 0.02439 0.02873 # Closing gap before 107 next to short segment # generation 50: best score out of 20: T0287.try5 202.45686 cost/residue, 226 clashes 0.15707 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 25 = 0.04000 0.00183 ## JiggleSubtree 0 19 10 / 91 = 0.10989 0.03183 ## JiggleSegment 0 28 16 / 162 = 0.09877 0.02657 ## OptSubtree 1 4 2 / 100 = 0.02000 0.00823 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 1 19 8 / 33 = 0.24242 0.00680 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 29 18 / 59 = 0.30508 0.00326 ## TweakPsiSegment 0 43 20 / 82 = 0.24390 0.00926 ## TweakPsiPhiSubtree 16 65 28 / 113 = 0.24779 0.01475 ## TweakPsiPhiSegment 8 66 33 / 129 = 0.25581 0.01812 ## TweakHbondSubtree 0 45 26 / 93 = 0.27957 0.01629 ## TweakHbondSegment 0 56 32 / 138 = 0.23188 0.02102 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 12 / 42 = 0.28571 0.00056 ## OneRotamer 0 32 8 / 97 = 0.08247 0.01219 ## ClashingRotamer 0 1 1 / 56 = 0.01786 0.00453 ## ClusteredRotamer 0 7 0 / 75 = 0.00000 0.00000 ## ReduceBreak 1 29 20 / 321 = 0.06231 0.06544 ## CloseGap 0 9 10 / 248 = 0.04032 0.02706 ## HealGap 0 15 5 / 218 = 0.02294 0.00467 ## MoveGap 0 56 31 / 439 = 0.07062 0.07852 ## ReduceConstraint 0 16 6 / 326 = 0.01840 0.04461 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 848 = 0.00590 0.02686 ## InsertFragment 0 13 8 / 233 = 0.03433 0.00795 ## TwoFragment 0 3 2 / 246 = 0.00813 0.01154 ## CrossOver 3 17 5 / 145 = 0.03448 0.00378 ## CrossAndInsert 4 4 2 / 217 = 0.00922 0.00548 ## ReduceClash 0 12 8 / 334 = 0.02395 0.02821 # Closing gap before 152 without wiggling. # generation 51: best score out of 20: T0287.try5 202.44611 cost/residue, 225 clashes 0.15760 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 26 = 0.03846 0.00176 ## JiggleSubtree 0 20 10 / 104 = 0.09615 0.02785 ## JiggleSegment 0 28 16 / 166 = 0.09639 0.02593 ## OptSubtree 1 4 2 / 106 = 0.01887 0.00776 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 1 21 10 / 35 = 0.28571 0.01220 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 31 19 / 62 = 0.30645 0.00384 ## TweakPsiSegment 0 44 21 / 84 = 0.25000 0.00943 ## TweakPsiPhiSubtree 16 68 30 / 118 = 0.25424 0.01636 ## TweakPsiPhiSegment 9 67 34 / 130 = 0.26154 0.01807 ## TweakHbondSubtree 0 48 28 / 99 = 0.28283 0.01628 ## TweakHbondSegment 0 58 33 / 147 = 0.22449 0.01979 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 12 / 42 = 0.28571 0.00056 ## OneRotamer 0 32 8 / 101 = 0.07921 0.01171 ## ClashingRotamer 0 1 1 / 61 = 0.01639 0.00416 ## ClusteredRotamer 0 7 0 / 75 = 0.00000 0.00000 ## ReduceBreak 1 29 20 / 323 = 0.06192 0.06504 ## CloseGap 0 9 10 / 253 = 0.03953 0.02653 ## HealGap 0 15 5 / 223 = 0.02242 0.00456 ## MoveGap 0 56 31 / 443 = 0.06998 0.07781 ## ReduceConstraint 0 16 6 / 328 = 0.01829 0.04434 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 856 = 0.00584 0.02661 ## InsertFragment 0 13 8 / 234 = 0.03419 0.00792 ## TwoFragment 0 3 2 / 248 = 0.00806 0.01145 ## CrossOver 3 17 5 / 147 = 0.03401 0.00373 ## CrossAndInsert 4 4 2 / 220 = 0.00909 0.00540 ## ReduceClash 0 12 8 / 338 = 0.02367 0.02788 # Closing gap before 163 next to short segment # generation 52: best score out of 20: T0287.try5 202.09285 cost/residue, 222 clashes 0.15920 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 27 = 0.03704 0.00170 ## JiggleSubtree 0 20 10 / 109 = 0.09174 0.02657 ## JiggleSegment 0 29 17 / 171 = 0.09942 0.02599 ## OptSubtree 1 4 2 / 108 = 0.01852 0.00762 ## OptSegment 0 0 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 1 21 11 / 38 = 0.28947 0.01146 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 33 21 / 65 = 0.32308 0.00460 ## TweakPsiSegment 0 45 22 / 88 = 0.25000 0.00903 ## TweakPsiPhiSubtree 17 69 31 / 122 = 0.25410 0.01614 ## TweakPsiPhiSegment 9 69 36 / 134 = 0.26866 0.01824 ## TweakHbondSubtree 0 50 31 / 106 = 0.29245 0.01575 ## TweakHbondSegment 0 64 38 / 158 = 0.24051 0.02110 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 24 12 / 42 = 0.28571 0.00056 ## OneRotamer 0 32 8 / 101 = 0.07921 0.01171 ## ClashingRotamer 0 1 1 / 62 = 0.01613 0.00409 ## ClusteredRotamer 0 7 0 / 76 = 0.00000 0.00000 ## ReduceBreak 1 29 20 / 326 = 0.06135 0.06444 ## CloseGap 0 9 11 / 257 = 0.04280 0.02615 ## HealGap 0 15 5 / 224 = 0.02232 0.00454 ## MoveGap 0 56 31 / 446 = 0.06951 0.07728 ## ReduceConstraint 0 16 6 / 334 = 0.01796 0.04354 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 867 = 0.00577 0.02627 ## InsertFragment 0 13 8 / 237 = 0.03376 0.00781 ## TwoFragment 0 3 2 / 249 = 0.00803 0.01141 ## CrossOver 4 17 5 / 153 = 0.03268 0.00358 ## CrossAndInsert 4 4 2 / 226 = 0.00885 0.00526 ## ReduceClash 0 12 8 / 342 = 0.02339 0.02755 # Closing gap before 138 without wiggling. # generation 53: best score out of 20: T0287.try5 202.06374 cost/residue, 223 clashes 0.15947 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 27 = 0.03704 0.00170 ## JiggleSubtree 0 20 10 / 115 = 0.08696 0.02519 ## JiggleSegment 0 29 17 / 174 = 0.09770 0.02554 ## OptSubtree 1 4 2 / 110 = 0.01818 0.00748 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 1 24 15 / 47 = 0.31915 0.01002 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 34 21 / 68 = 0.30882 0.00439 ## TweakPsiSegment 0 48 24 / 94 = 0.25532 0.00896 ## TweakPsiPhiSubtree 18 69 31 / 122 = 0.25410 0.01614 ## TweakPsiPhiSegment 10 74 38 / 140 = 0.27143 0.01789 ## TweakHbondSubtree 0 53 32 / 111 = 0.28829 0.01659 ## TweakHbondSegment 0 65 39 / 164 = 0.23780 0.02116 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 24 12 / 42 = 0.28571 0.00056 ## OneRotamer 0 32 8 / 105 = 0.07619 0.01126 ## ClashingRotamer 0 1 1 / 63 = 0.01587 0.00403 ## ClusteredRotamer 0 7 0 / 76 = 0.00000 0.00000 ## ReduceBreak 1 29 20 / 331 = 0.06042 0.06347 ## CloseGap 0 9 11 / 258 = 0.04264 0.02605 ## HealGap 0 15 6 / 233 = 0.02575 0.00438 ## MoveGap 0 56 31 / 452 = 0.06858 0.07626 ## ReduceConstraint 0 16 6 / 339 = 0.01770 0.04290 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 874 = 0.00572 0.02606 ## InsertFragment 0 13 8 / 240 = 0.03333 0.00772 ## TwoFragment 0 3 2 / 252 = 0.00794 0.01127 ## CrossOver 4 17 5 / 156 = 0.03205 0.00351 ## CrossAndInsert 4 4 2 / 227 = 0.00881 0.00524 ## ReduceClash 0 12 8 / 346 = 0.02312 0.02723 # Closing gap before 54 # generation 54: best score out of 20: T0287.try5 202.00909 cost/residue, 226 clashes 0.15931 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 27 = 0.03704 0.00170 ## JiggleSubtree 0 20 10 / 122 = 0.08197 0.02374 ## JiggleSegment 0 30 18 / 180 = 0.10000 0.02491 ## OptSubtree 1 4 2 / 111 = 0.01802 0.00741 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 1 26 17 / 53 = 0.32075 0.00889 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 36 23 / 71 = 0.32394 0.00480 ## TweakPsiSegment 0 49 24 / 96 = 0.25000 0.00877 ## TweakPsiPhiSubtree 18 70 32 / 126 = 0.25397 0.01592 ## TweakPsiPhiSegment 11 75 39 / 143 = 0.27273 0.01858 ## TweakHbondSubtree 0 56 33 / 117 = 0.28205 0.01657 ## TweakHbondSegment 0 66 39 / 171 = 0.22807 0.02029 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 25 12 / 43 = 0.27907 0.00055 ## OneRotamer 0 32 8 / 105 = 0.07619 0.01126 ## ClashingRotamer 0 1 1 / 63 = 0.01587 0.00403 ## ClusteredRotamer 0 7 0 / 76 = 0.00000 0.00000 ## ReduceBreak 1 29 20 / 335 = 0.05970 0.06271 ## CloseGap 0 9 11 / 261 = 0.04215 0.02575 ## HealGap 0 15 6 / 237 = 0.02532 0.00431 ## MoveGap 0 56 31 / 457 = 0.06783 0.07542 ## ReduceConstraint 0 16 6 / 347 = 0.01729 0.04191 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 890 = 0.00562 0.02559 ## InsertFragment 0 13 8 / 245 = 0.03265 0.00756 ## TwoFragment 0 3 2 / 254 = 0.00787 0.01118 ## CrossOver 4 17 5 / 159 = 0.03145 0.00345 ## CrossAndInsert 4 4 2 / 227 = 0.00881 0.00524 ## ReduceClash 0 12 8 / 347 = 0.02305 0.02715 # generation 55: best score out of 20: T0287.try5 202.00909 cost/residue, 226 clashes 0.15931 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 28 = 0.03571 0.00164 ## JiggleSubtree 0 20 10 / 130 = 0.07692 0.02228 ## JiggleSegment 0 30 18 / 188 = 0.09574 0.02385 ## OptSubtree 1 4 2 / 112 = 0.01786 0.00735 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 1 26 17 / 54 = 0.31481 0.00872 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 40 23 / 79 = 0.29114 0.00432 ## TweakPsiSegment 0 51 25 / 100 = 0.25000 0.00850 ## TweakPsiPhiSubtree 19 70 33 / 129 = 0.25581 0.01562 ## TweakPsiPhiSegment 11 77 41 / 149 = 0.27517 0.01814 ## TweakHbondSubtree 0 58 33 / 123 = 0.26829 0.01576 ## TweakHbondSegment 0 69 40 / 181 = 0.22099 0.01923 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 25 12 / 44 = 0.27273 0.00053 ## OneRotamer 0 32 8 / 108 = 0.07407 0.01095 ## ClashingRotamer 0 1 1 / 63 = 0.01587 0.00403 ## ClusteredRotamer 0 7 0 / 77 = 0.00000 0.00000 ## ReduceBreak 1 29 20 / 342 = 0.05848 0.06143 ## CloseGap 0 9 11 / 261 = 0.04215 0.02575 ## HealGap 0 15 6 / 243 = 0.02469 0.00420 ## MoveGap 0 56 31 / 464 = 0.06681 0.07429 ## ReduceConstraint 0 16 6 / 351 = 0.01709 0.04143 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 896 = 0.00558 0.02542 ## InsertFragment 0 13 8 / 247 = 0.03239 0.00750 ## TwoFragment 0 3 2 / 255 = 0.00784 0.01114 ## CrossOver 4 17 5 / 161 = 0.03106 0.00340 ## CrossAndInsert 4 4 2 / 228 = 0.00877 0.00521 ## ReduceClash 0 12 8 / 349 = 0.02292 0.02700 # generation 56: best score out of 20: T0287.try5 201.91158 cost/residue, 226 clashes 0.16037 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 28 = 0.03571 0.00164 ## JiggleSubtree 0 20 10 / 140 = 0.07143 0.02069 ## JiggleSegment 0 30 18 / 192 = 0.09375 0.02336 ## OptSubtree 1 4 2 / 115 = 0.01739 0.00715 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 1 26 17 / 58 = 0.29310 0.00812 ## TweakPhiSegment 4 15 4 / 20 = 0.20000 0.00207 ## TweakPsiSubtree 0 42 24 / 83 = 0.28916 0.00419 ## TweakPsiSegment 0 53 26 / 103 = 0.25243 0.00888 ## TweakPsiPhiSubtree 19 71 34 / 131 = 0.25954 0.01614 ## TweakPsiPhiSegment 12 81 43 / 156 = 0.27564 0.01746 ## TweakHbondSubtree 0 59 34 / 127 = 0.26772 0.01543 ## TweakHbondSegment 0 69 40 / 188 = 0.21277 0.01851 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 27 13 / 46 = 0.28261 0.00053 ## OneRotamer 0 32 8 / 110 = 0.07273 0.01075 ## ClashingRotamer 0 1 1 / 66 = 0.01515 0.00385 ## ClusteredRotamer 0 7 0 / 77 = 0.00000 0.00000 ## ReduceBreak 1 29 20 / 348 = 0.05747 0.06037 ## CloseGap 0 9 11 / 265 = 0.04151 0.02536 ## HealGap 0 15 6 / 246 = 0.02439 0.00415 ## MoveGap 0 56 31 / 470 = 0.06596 0.07334 ## ReduceConstraint 0 16 6 / 356 = 0.01685 0.04085 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 904 = 0.00553 0.02520 ## InsertFragment 0 13 8 / 250 = 0.03200 0.00741 ## TwoFragment 0 3 2 / 255 = 0.00784 0.01114 ## CrossOver 4 17 5 / 164 = 0.03049 0.00334 ## CrossAndInsert 4 4 2 / 230 = 0.00870 0.00517 ## ReduceClash 0 12 8 / 352 = 0.02273 0.02677 # generation 57: best score out of 20: T0287.try5 201.72897 cost/residue, 227 clashes 0.16021 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 28 = 0.03571 0.00164 ## JiggleSubtree 0 20 10 / 148 = 0.06757 0.01957 ## JiggleSegment 0 30 18 / 195 = 0.09231 0.02300 ## OptSubtree 1 4 2 / 117 = 0.01709 0.00703 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 1 26 17 / 59 = 0.28814 0.00798 ## TweakPhiSegment 4 16 5 / 21 = 0.23810 0.00571 ## TweakPsiSubtree 0 45 26 / 89 = 0.29213 0.00407 ## TweakPsiSegment 0 57 29 / 109 = 0.26606 0.00849 ## TweakPsiPhiSubtree 19 71 34 / 135 = 0.25185 0.01566 ## TweakPsiPhiSegment 13 83 45 / 161 = 0.27950 0.01860 ## TweakHbondSubtree 0 62 34 / 132 = 0.25758 0.01485 ## TweakHbondSegment 0 69 40 / 198 = 0.20202 0.01758 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 27 14 / 47 = 0.29787 0.00054 ## OneRotamer 0 33 8 / 113 = 0.07080 0.01046 ## ClashingRotamer 0 1 1 / 66 = 0.01515 0.00385 ## ClusteredRotamer 0 7 0 / 77 = 0.00000 0.00000 ## ReduceBreak 1 30 21 / 355 = 0.05915 0.05963 ## CloseGap 0 9 11 / 266 = 0.04135 0.02527 ## HealGap 0 15 6 / 247 = 0.02429 0.00413 ## MoveGap 0 56 31 / 473 = 0.06554 0.07287 ## ReduceConstraint 0 16 6 / 364 = 0.01648 0.03995 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 914 = 0.00547 0.02492 ## InsertFragment 0 14 8 / 251 = 0.03187 0.00738 ## TwoFragment 0 3 2 / 258 = 0.00775 0.01101 ## CrossOver 4 17 5 / 168 = 0.02976 0.00326 ## CrossAndInsert 4 4 2 / 234 = 0.00855 0.00508 ## ReduceClash 0 12 8 / 353 = 0.02266 0.02669 # generation 58: best score out of 20: T0287.try5 201.45493 cost/residue, 227 clashes 0.15757 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 28 = 0.03571 0.00164 ## JiggleSubtree 0 20 10 / 154 = 0.06494 0.01881 ## JiggleSegment 0 30 18 / 196 = 0.09184 0.02288 ## OptSubtree 1 4 2 / 118 = 0.01695 0.00697 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 1 27 18 / 62 = 0.29032 0.00778 ## TweakPhiSegment 4 20 6 / 40 = 0.15000 0.00393 ## TweakPsiSubtree 0 46 27 / 90 = 0.30000 0.00425 ## TweakPsiSegment 1 59 30 / 113 = 0.26549 0.00823 ## TweakPsiPhiSubtree 20 72 35 / 139 = 0.25180 0.01545 ## TweakPsiPhiSegment 14 85 48 / 168 = 0.28571 0.01808 ## TweakHbondSubtree 0 65 36 / 136 = 0.26471 0.01659 ## TweakHbondSegment 0 70 40 / 202 = 0.19802 0.01723 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 28 14 / 48 = 0.29167 0.00053 ## OneRotamer 0 33 8 / 117 = 0.06838 0.01011 ## ClashingRotamer 0 1 1 / 68 = 0.01471 0.00373 ## ClusteredRotamer 0 7 0 / 78 = 0.00000 0.00000 ## ReduceBreak 1 30 21 / 357 = 0.05882 0.05929 ## CloseGap 0 9 11 / 267 = 0.04120 0.02517 ## HealGap 0 15 6 / 252 = 0.02381 0.00405 ## MoveGap 0 56 31 / 476 = 0.06513 0.07241 ## ReduceConstraint 0 16 6 / 368 = 0.01630 0.03952 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 921 = 0.00543 0.02473 ## InsertFragment 0 14 8 / 254 = 0.03150 0.00729 ## TwoFragment 0 3 2 / 259 = 0.00772 0.01097 ## CrossOver 4 17 5 / 172 = 0.02907 0.00318 ## CrossAndInsert 4 4 2 / 235 = 0.00851 0.00506 ## ReduceClash 0 12 8 / 358 = 0.02235 0.02632 # Closing gap before 107 next to short segment # generation 59: best score out of 20: T0287.try5 201.08434 cost/residue, 212 clashes 0.16195 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 1 / 28 = 0.03571 0.00164 ## JiggleSubtree 0 21 11 / 160 = 0.06875 0.01970 ## JiggleSegment 0 30 18 / 201 = 0.08955 0.02231 ## OptSubtree 1 4 2 / 118 = 0.01695 0.00697 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 1 27 19 / 65 = 0.29231 0.00742 ## TweakPhiSegment 4 21 6 / 44 = 0.13636 0.00357 ## TweakPsiSubtree 0 46 28 / 93 = 0.30108 0.00412 ## TweakPsiSegment 1 61 32 / 116 = 0.27586 0.00808 ## TweakPsiPhiSubtree 20 73 38 / 148 = 0.25676 0.01490 ## TweakPsiPhiSegment 15 88 49 / 176 = 0.27841 0.01734 ## TweakHbondSubtree 0 69 37 / 143 = 0.25874 0.01726 ## TweakHbondSegment 0 72 42 / 210 = 0.20000 0.01673 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 29 15 / 51 = 0.29412 0.00059 ## OneRotamer 0 33 8 / 119 = 0.06723 0.00994 ## ClashingRotamer 0 1 1 / 68 = 0.01471 0.00373 ## ClusteredRotamer 0 7 0 / 78 = 0.00000 0.00000 ## ReduceBreak 1 31 22 / 363 = 0.06061 0.05933 ## CloseGap 0 9 11 / 268 = 0.04104 0.02508 ## HealGap 0 16 7 / 256 = 0.02734 0.00424 ## MoveGap 0 56 31 / 479 = 0.06472 0.07196 ## ReduceConstraint 0 16 6 / 369 = 0.01626 0.03941 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 925 = 0.00541 0.02462 ## InsertFragment 0 14 8 / 257 = 0.03113 0.00721 ## TwoFragment 0 3 2 / 263 = 0.00760 0.01080 ## CrossOver 5 18 6 / 178 = 0.03371 0.00349 ## CrossAndInsert 4 4 2 / 239 = 0.00837 0.00497 ## ReduceClash 0 12 8 / 359 = 0.02228 0.02625 # generation 60: best score out of 20: T0287.try5 201.08434 cost/residue, 212 clashes 0.16195 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 2 / 29 = 0.06897 0.00217 ## JiggleSubtree 0 22 12 / 167 = 0.07186 0.01891 ## JiggleSegment 0 30 18 / 209 = 0.08612 0.02146 ## OptSubtree 1 4 2 / 122 = 0.01639 0.00674 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 1 29 22 / 69 = 0.31884 0.00801 ## TweakPhiSegment 4 24 6 / 47 = 0.12766 0.00334 ## TweakPsiSubtree 0 48 28 / 97 = 0.28866 0.00395 ## TweakPsiSegment 1 61 32 / 119 = 0.26891 0.00788 ## TweakPsiPhiSubtree 20 74 38 / 152 = 0.25000 0.01451 ## TweakPsiPhiSegment 15 91 52 / 181 = 0.28729 0.01837 ## TweakHbondSubtree 0 71 37 / 148 = 0.25000 0.01667 ## TweakHbondSegment 0 73 43 / 214 = 0.20093 0.01646 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 29 15 / 51 = 0.29412 0.00059 ## OneRotamer 0 33 8 / 121 = 0.06612 0.00977 ## ClashingRotamer 0 1 1 / 68 = 0.01471 0.00373 ## ClusteredRotamer 0 7 0 / 80 = 0.00000 0.00000 ## ReduceBreak 1 32 22 / 373 = 0.05898 0.05774 ## CloseGap 0 9 11 / 271 = 0.04059 0.02480 ## HealGap 0 16 7 / 263 = 0.02662 0.00413 ## MoveGap 0 56 31 / 482 = 0.06432 0.07151 ## ReduceConstraint 0 16 6 / 373 = 0.01609 0.03899 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 5 / 932 = 0.00536 0.02444 ## InsertFragment 0 15 8 / 259 = 0.03089 0.00715 ## TwoFragment 0 3 2 / 263 = 0.00760 0.01080 ## CrossOver 5 18 6 / 181 = 0.03315 0.00344 ## CrossAndInsert 4 4 2 / 240 = 0.00833 0.00495 ## ReduceClash 0 12 8 / 362 = 0.02210 0.02603 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_116336821.pdb -s /var/tmp/to_scwrl_116336821.seq -o /var/tmp/from_scwrl_116336821.pdb > /var/tmp/scwrl_116336821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_116336821.pdb # T0287.try5-scwrl 199.30104 cost/residue 192 clashes 0.16196 breaks # iteration 1 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try5 at pool[8] 228.09874 cost/residue, 263 clashes 0.28657 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0287.try5 227.88025 cost/residue, 265 clashes 0.29032 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 7 = 0.00000 0.00000 ## CloseGap 0 0 1 / 6 = 0.16667 0.07631 ## HealGap 0 3 0 / 5 = 0.00000 0.00000 ## MoveGap 0 6 3 / 7 = 0.42857 1.06893 ## ReduceConstraint 0 3 1 / 6 = 0.16667 0.03642 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 3 / 28 = 0.10714 0.19946 ## InsertFragment 0 0 0 / 4 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 6 = 0.00000 0.00000 ## CrossOver 2 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 7 = 0.00000 0.00000 ## ReduceClash 0 1 2 / 8 = 0.25000 0.31805 # generation 2: best score out of 20: T0287.try5 226.41878 cost/residue, 232 clashes 0.28851 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 2 1 / 3 = 0.33333 0.15812 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 11 = 0.00000 0.00000 ## CloseGap 0 0 2 / 13 = 0.15385 0.08393 ## HealGap 0 3 0 / 11 = 0.00000 0.00000 ## MoveGap 0 12 3 / 19 = 0.15789 0.39382 ## ReduceConstraint 0 3 1 / 9 = 0.11111 0.02428 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 5 / 53 = 0.09434 0.12784 ## InsertFragment 0 2 2 / 12 = 0.16667 0.12592 ## TwoFragment 0 0 0 / 17 = 0.00000 0.00000 ## CrossOver 2 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 12 = 0.00000 0.00000 ## ReduceClash 0 1 2 / 13 = 0.15385 0.19573 # generation 3: best score out of 20: T0287.try5 226.22757 cost/residue, 215 clashes 0.34521 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 3 1 / 5 = 0.20000 0.09487 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 16 = 0.00000 0.00000 ## CloseGap 0 0 2 / 22 = 0.09091 0.04960 ## HealGap 0 3 0 / 21 = 0.00000 0.00000 ## MoveGap 0 17 4 / 26 = 0.15385 0.29514 ## ReduceConstraint 0 4 1 / 15 = 0.06667 0.01457 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 5 / 78 = 0.06410 0.08686 ## InsertFragment 0 2 2 / 18 = 0.11111 0.08395 ## TwoFragment 0 0 0 / 21 = 0.00000 0.00000 ## CrossOver 2 1 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 17 = 0.00000 0.00000 ## ReduceClash 0 1 2 / 21 = 0.09524 0.12116 # generation 4: best score out of 20: T0287.try5 220.05560 cost/residue, 211 clashes 0.33476 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 3 1 / 9 = 0.11111 0.05271 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 2 1 / 3 = 0.33333 0.02575 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 22 = 0.04545 0.11915 ## CloseGap 0 0 2 / 26 = 0.07692 0.04197 ## HealGap 0 3 0 / 25 = 0.00000 0.00000 ## MoveGap 0 20 5 / 35 = 0.14286 0.22030 ## ReduceConstraint 0 5 1 / 18 = 0.05556 0.01214 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 6 / 101 = 0.05941 0.12819 ## InsertFragment 0 4 3 / 26 = 0.11538 0.10040 ## TwoFragment 0 0 0 / 28 = 0.00000 0.00000 ## CrossOver 2 1 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 1 2 / 26 = 0.07692 0.09786 # generation 5: best score out of 20: T0287.try5 218.17351 cost/residue, 237 clashes 0.26597 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 3 1 / 10 = 0.10000 0.04743 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 3 2 / 4 = 0.50000 0.05206 ## ClashingRotamer 0 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 4 2 / 29 = 0.06897 0.25018 ## CloseGap 0 0 2 / 30 = 0.06667 0.03637 ## HealGap 0 3 0 / 27 = 0.00000 0.00000 ## MoveGap 0 23 5 / 44 = 0.11364 0.17524 ## ReduceConstraint 0 5 1 / 24 = 0.04167 0.00910 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 7 / 132 = 0.05303 0.16127 ## InsertFragment 0 5 3 / 35 = 0.08571 0.07459 ## TwoFragment 0 1 0 / 36 = 0.00000 0.00000 ## CrossOver 2 1 0 / 13 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 27 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 35 = 0.05714 0.07270 # Closing gap before 74 without wiggling. # generation 6: best score out of 20: T0287.try5 217.50458 cost/residue, 234 clashes 0.26597 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 1 = 1.00000 0.25427 ## JiggleSubtree 0 3 1 / 11 = 0.09091 0.04312 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 1 = 1.00000 0.00372 ## OneRotamer 0 3 2 / 5 = 0.40000 0.04164 ## ClashingRotamer 0 1 1 / 11 = 0.09091 0.03282 ## ClusteredRotamer 0 2 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 5 2 / 39 = 0.05128 0.18603 ## CloseGap 0 1 2 / 36 = 0.05556 0.03031 ## HealGap 0 3 0 / 30 = 0.00000 0.00000 ## MoveGap 0 24 5 / 49 = 0.10204 0.15736 ## ReduceConstraint 0 7 2 / 29 = 0.06897 0.07358 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 9 / 163 = 0.05521 0.17153 ## InsertFragment 0 6 3 / 47 = 0.06383 0.05554 ## TwoFragment 0 1 0 / 43 = 0.00000 0.00000 ## CrossOver 2 1 0 / 13 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 43 = 0.04651 0.05917 # generation 7: best score out of 20: T0287.try5 215.10101 cost/residue, 257 clashes 0.29131 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 10 = 0.30000 0.02994 ## JiggleSubtree 0 3 1 / 11 = 0.09091 0.04312 ## JiggleSegment 0 2 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 2 = 0.50000 0.00186 ## OneRotamer 0 3 2 / 7 = 0.28571 0.02975 ## ClashingRotamer 0 2 1 / 14 = 0.07143 0.02579 ## ClusteredRotamer 0 2 0 / 12 = 0.00000 0.00000 ## ReduceBreak 0 5 2 / 44 = 0.04545 0.16489 ## CloseGap 0 1 2 / 43 = 0.04651 0.02538 ## HealGap 0 3 0 / 33 = 0.00000 0.00000 ## MoveGap 0 25 7 / 53 = 0.13208 0.15683 ## ReduceConstraint 0 7 2 / 34 = 0.05882 0.06276 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 11 / 187 = 0.05882 0.16960 ## InsertFragment 0 6 3 / 52 = 0.05769 0.05020 ## TwoFragment 0 1 0 / 50 = 0.00000 0.00000 ## CrossOver 2 1 0 / 16 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 34 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 48 = 0.04167 0.05301 # generation 8: best score out of 20: T0287.try5 212.31897 cost/residue, 216 clashes 0.26263 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 12 = 0.25000 0.02495 ## JiggleSubtree 0 4 1 / 12 = 0.08333 0.03953 ## JiggleSegment 0 2 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 1 / 4 = 0.25000 0.01480 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 2 = 0.50000 0.00186 ## OneRotamer 0 4 2 / 8 = 0.25000 0.02603 ## ClashingRotamer 0 3 1 / 17 = 0.05882 0.02124 ## ClusteredRotamer 0 2 0 / 14 = 0.00000 0.00000 ## ReduceBreak 1 10 6 / 56 = 0.10714 0.27207 ## CloseGap 0 2 3 / 46 = 0.06522 0.06289 ## HealGap 0 3 0 / 38 = 0.00000 0.00000 ## MoveGap 0 26 9 / 61 = 0.14754 0.14087 ## ReduceConstraint 0 8 3 / 42 = 0.07143 0.07347 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 216 = 0.05556 0.15271 ## InsertFragment 0 6 3 / 58 = 0.05172 0.04501 ## TwoFragment 0 1 0 / 51 = 0.00000 0.00000 ## CrossOver 2 1 0 / 18 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 52 = 0.03846 0.04893 # generation 9: best score out of 20: T0287.try5 211.66817 cost/residue, 215 clashes 0.21623 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 14 = 0.21429 0.02139 ## JiggleSubtree 0 4 1 / 12 = 0.08333 0.03953 ## JiggleSegment 0 3 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 1 / 4 = 0.25000 0.00054 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 1 / 4 = 0.25000 0.01480 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 3 = 0.33333 0.03837 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 2 = 0.50000 0.00186 ## OneRotamer 0 5 2 / 11 = 0.18182 0.01893 ## ClashingRotamer 0 3 1 / 19 = 0.05263 0.01900 ## ClusteredRotamer 0 3 0 / 17 = 0.00000 0.00000 ## ReduceBreak 1 10 6 / 63 = 0.09524 0.24184 ## CloseGap 0 2 3 / 50 = 0.06000 0.05786 ## HealGap 0 5 0 / 44 = 0.00000 0.00000 ## MoveGap 0 28 11 / 67 = 0.16418 0.14162 ## ReduceConstraint 0 8 3 / 48 = 0.06250 0.06428 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 237 = 0.05063 0.13918 ## InsertFragment 0 7 4 / 66 = 0.06061 0.06358 ## TwoFragment 0 2 1 / 55 = 0.01818 0.03241 ## CrossOver 2 1 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 44 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 59 = 0.03390 0.04313 # generation 10: best score out of 20: T0287.try5 211.65724 cost/residue, 215 clashes 0.21623 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 14 = 0.21429 0.02139 ## JiggleSubtree 0 4 1 / 12 = 0.08333 0.03953 ## JiggleSegment 0 4 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 1 / 4 = 0.25000 0.00054 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 3 2 / 5 = 0.40000 0.04236 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 5 = 0.20000 0.02302 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 2 / 3 = 0.66667 0.00488 ## OneRotamer 0 6 2 / 14 = 0.14286 0.01487 ## ClashingRotamer 0 3 1 / 19 = 0.05263 0.01900 ## ClusteredRotamer 0 3 0 / 17 = 0.00000 0.00000 ## ReduceBreak 1 11 7 / 75 = 0.09333 0.20530 ## CloseGap 0 3 4 / 57 = 0.07018 0.09419 ## HealGap 0 5 0 / 46 = 0.00000 0.00000 ## MoveGap 0 30 13 / 75 = 0.17333 0.16520 ## ReduceConstraint 0 8 3 / 56 = 0.05357 0.05510 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 18 13 / 262 = 0.04962 0.13365 ## InsertFragment 0 7 4 / 71 = 0.05634 0.05910 ## TwoFragment 0 2 1 / 62 = 0.01613 0.02875 ## CrossOver 2 1 0 / 23 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 51 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 65 = 0.03077 0.03915 # generation 11: best score out of 20: T0287.try5 210.92258 cost/residue, 218 clashes 0.20166 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 3 / 15 = 0.20000 0.01996 ## JiggleSubtree 0 5 1 / 13 = 0.07692 0.03649 ## JiggleSegment 0 5 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 1 / 5 = 0.20000 0.00043 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 2 / 5 = 0.40000 0.04236 ## TweakHbondSubtree 0 1 1 / 2 = 0.50000 0.05129 ## TweakHbondSegment 0 5 2 / 7 = 0.28571 0.02288 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 4 = 0.75000 0.00378 ## OneRotamer 0 6 2 / 15 = 0.13333 0.01388 ## ClashingRotamer 0 3 1 / 20 = 0.05000 0.01805 ## ClusteredRotamer 0 3 0 / 18 = 0.00000 0.00000 ## ReduceBreak 1 13 9 / 80 = 0.11250 0.20552 ## CloseGap 0 3 4 / 66 = 0.06061 0.08135 ## HealGap 0 5 0 / 53 = 0.00000 0.00000 ## MoveGap 0 30 13 / 85 = 0.15294 0.14576 ## ReduceConstraint 0 10 4 / 63 = 0.06349 0.05005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 13 / 290 = 0.04483 0.12074 ## InsertFragment 0 7 4 / 77 = 0.05195 0.05450 ## TwoFragment 0 2 1 / 68 = 0.01471 0.02621 ## CrossOver 2 1 0 / 25 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 54 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 67 = 0.02985 0.03798 # Closing gap before 198 next to short segment # generation 12: best score out of 20: T0287.try5 210.61440 cost/residue, 217 clashes 0.19064 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 3 / 15 = 0.20000 0.01996 ## JiggleSubtree 0 5 1 / 14 = 0.07143 0.03388 ## JiggleSegment 0 5 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 1 / 5 = 0.20000 0.00043 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 7 5 / 10 = 0.50000 0.04191 ## TweakHbondSubtree 0 2 2 / 6 = 0.33333 0.04028 ## TweakHbondSegment 0 5 2 / 7 = 0.28571 0.02288 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 3 / 7 = 0.42857 0.00216 ## OneRotamer 0 7 3 / 17 = 0.17647 0.03112 ## ClashingRotamer 0 3 1 / 23 = 0.04348 0.01570 ## ClusteredRotamer 0 3 0 / 18 = 0.00000 0.00000 ## ReduceBreak 1 13 9 / 89 = 0.10112 0.18474 ## CloseGap 0 4 5 / 74 = 0.06757 0.07309 ## HealGap 0 5 0 / 60 = 0.00000 0.00000 ## MoveGap 0 30 13 / 88 = 0.14773 0.14079 ## ReduceConstraint 0 10 4 / 70 = 0.05714 0.04505 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 13 / 313 = 0.04153 0.11187 ## InsertFragment 0 8 5 / 81 = 0.06173 0.05561 ## TwoFragment 0 2 1 / 74 = 0.01351 0.02409 ## CrossOver 2 2 0 / 28 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 57 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 67 = 0.02985 0.03798 # generation 13: best score out of 20: T0287.try5 210.61223 cost/residue, 217 clashes 0.19064 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 3 / 16 = 0.18750 0.01871 ## JiggleSubtree 0 5 1 / 15 = 0.06667 0.03162 ## JiggleSegment 0 5 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 1 / 5 = 0.20000 0.00043 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.00108 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 8 6 / 11 = 0.54545 0.03834 ## TweakHbondSubtree 0 4 3 / 8 = 0.37500 0.03178 ## TweakHbondSegment 0 5 2 / 7 = 0.28571 0.02288 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 3 / 7 = 0.42857 0.00216 ## OneRotamer 0 10 3 / 20 = 0.15000 0.02645 ## ClashingRotamer 0 3 1 / 23 = 0.04348 0.01570 ## ClusteredRotamer 0 3 0 / 21 = 0.00000 0.00000 ## ReduceBreak 1 15 9 / 103 = 0.08738 0.15963 ## CloseGap 0 4 5 / 86 = 0.05814 0.06289 ## HealGap 0 6 0 / 66 = 0.00000 0.00000 ## MoveGap 0 30 13 / 97 = 0.13402 0.12773 ## ReduceConstraint 0 10 4 / 78 = 0.05128 0.04043 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 13 / 332 = 0.03916 0.10547 ## InsertFragment 0 9 5 / 88 = 0.05682 0.05119 ## TwoFragment 0 2 1 / 77 = 0.01299 0.02315 ## CrossOver 2 2 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 61 = 0.00000 0.00000 ## ReduceClash 0 2 2 / 70 = 0.02857 0.03635 # generation 14: best score out of 20: T0287.try5 210.12257 cost/residue, 212 clashes 0.19084 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 3 / 17 = 0.17647 0.01761 ## JiggleSubtree 0 5 1 / 15 = 0.06667 0.03162 ## JiggleSegment 0 5 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 2 = 0.50000 0.00001 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 1 / 6 = 0.16667 0.00036 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.00108 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 10 6 / 13 = 0.46154 0.03244 ## TweakHbondSubtree 0 5 4 / 9 = 0.44444 0.03291 ## TweakHbondSegment 0 5 2 / 7 = 0.28571 0.02288 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 3 / 8 = 0.37500 0.00189 ## OneRotamer 0 11 3 / 23 = 0.13043 0.02300 ## ClashingRotamer 0 3 1 / 24 = 0.04167 0.01504 ## ClusteredRotamer 0 3 0 / 23 = 0.00000 0.00000 ## ReduceBreak 1 17 10 / 112 = 0.08929 0.15050 ## CloseGap 0 4 5 / 90 = 0.05556 0.06009 ## HealGap 0 6 0 / 69 = 0.00000 0.00000 ## MoveGap 0 30 13 / 109 = 0.11927 0.11367 ## ReduceConstraint 0 10 4 / 83 = 0.04819 0.03799 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 14 / 353 = 0.03966 0.10059 ## InsertFragment 0 10 6 / 95 = 0.06316 0.05052 ## TwoFragment 0 2 1 / 82 = 0.01220 0.02174 ## CrossOver 3 2 0 / 33 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 66 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 75 = 0.04000 0.03767 # generation 15: best score out of 20: T0287.try5 210.12257 cost/residue, 212 clashes 0.19084 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 3 / 17 = 0.17647 0.01761 ## JiggleSubtree 0 7 1 / 17 = 0.05882 0.02790 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 2 = 0.50000 0.00001 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 1 / 8 = 0.12500 0.00027 ## TweakPsiSegment 0 2 2 / 3 = 0.66667 0.00105 ## TweakPsiPhiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 10 6 / 13 = 0.46154 0.03244 ## TweakHbondSubtree 0 6 4 / 11 = 0.36364 0.02693 ## TweakHbondSegment 0 6 2 / 8 = 0.25000 0.02002 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 7 3 / 9 = 0.33333 0.00168 ## OneRotamer 0 11 3 / 23 = 0.13043 0.02300 ## ClashingRotamer 0 3 1 / 25 = 0.04000 0.01444 ## ClusteredRotamer 0 3 0 / 25 = 0.00000 0.00000 ## ReduceBreak 2 17 10 / 117 = 0.08547 0.14407 ## CloseGap 0 4 5 / 94 = 0.05319 0.05754 ## HealGap 0 6 0 / 72 = 0.00000 0.00000 ## MoveGap 0 32 13 / 119 = 0.10924 0.10412 ## ReduceConstraint 0 10 4 / 87 = 0.04598 0.03624 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 14 / 373 = 0.03753 0.09519 ## InsertFragment 0 11 6 / 111 = 0.05405 0.04324 ## TwoFragment 0 2 1 / 87 = 0.01149 0.02049 ## CrossOver 3 2 0 / 38 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 72 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 79 = 0.03797 0.03576 # generation 16: best score out of 20: T0287.try5 210.04276 cost/residue, 215 clashes 0.19454 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 3 / 18 = 0.16667 0.01663 ## JiggleSubtree 0 9 2 / 19 = 0.10526 0.03324 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 2 / 3 = 0.66667 0.01311 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 1 / 8 = 0.12500 0.00027 ## TweakPsiSegment 0 2 2 / 3 = 0.66667 0.00105 ## TweakPsiPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 12 8 / 16 = 0.50000 0.03143 ## TweakHbondSubtree 0 7 4 / 13 = 0.30769 0.02279 ## TweakHbondSegment 0 11 3 / 13 = 0.23077 0.01451 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 8 4 / 10 = 0.40000 0.00152 ## OneRotamer 0 11 3 / 23 = 0.13043 0.02300 ## ClashingRotamer 0 3 1 / 28 = 0.03571 0.01289 ## ClusteredRotamer 0 3 0 / 28 = 0.00000 0.00000 ## ReduceBreak 2 17 10 / 129 = 0.07752 0.13067 ## CloseGap 0 4 5 / 97 = 0.05155 0.05576 ## HealGap 0 6 0 / 79 = 0.00000 0.00000 ## MoveGap 0 32 13 / 129 = 0.10078 0.09605 ## ReduceConstraint 0 10 4 / 91 = 0.04396 0.03465 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 14 / 391 = 0.03581 0.09081 ## InsertFragment 0 11 6 / 116 = 0.05172 0.04137 ## TwoFragment 0 2 1 / 91 = 0.01099 0.01959 ## CrossOver 3 2 0 / 38 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 78 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 87 = 0.03448 0.03247 # generation 17: best score out of 20: T0287.try5 209.91292 cost/residue, 207 clashes 0.18584 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 19 = 0.15789 0.01576 ## JiggleSubtree 0 9 2 / 24 = 0.08333 0.02631 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 2 / 4 = 0.50000 0.00983 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 1 / 8 = 0.12500 0.00027 ## TweakPsiSegment 0 5 5 / 8 = 0.62500 0.00282 ## TweakPsiPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 12 8 / 17 = 0.47059 0.02958 ## TweakHbondSubtree 0 8 6 / 18 = 0.33333 0.01722 ## TweakHbondSegment 0 12 4 / 16 = 0.25000 0.01405 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 5 / 11 = 0.45455 0.00141 ## OneRotamer 0 12 3 / 25 = 0.12000 0.02116 ## ClashingRotamer 0 3 1 / 28 = 0.03571 0.01289 ## ClusteredRotamer 0 3 0 / 29 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 141 = 0.07801 0.12158 ## CloseGap 0 4 5 / 103 = 0.04854 0.05251 ## HealGap 0 6 0 / 83 = 0.00000 0.00000 ## MoveGap 0 32 13 / 135 = 0.09630 0.09178 ## ReduceConstraint 0 11 5 / 97 = 0.05155 0.03309 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 14 / 412 = 0.03398 0.08618 ## InsertFragment 0 12 6 / 121 = 0.04959 0.03966 ## TwoFragment 0 2 1 / 95 = 0.01053 0.01876 ## CrossOver 3 2 0 / 40 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 81 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 91 = 0.03297 0.03105 # generation 18: best score out of 20: T0287.try5 209.43971 cost/residue, 213 clashes 0.19257 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 4 / 21 = 0.19048 0.01486 ## JiggleSubtree 0 10 3 / 25 = 0.12000 0.04472 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 2 / 6 = 0.33333 0.00655 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 1 / 8 = 0.12500 0.00027 ## TweakPsiSegment 0 7 5 / 10 = 0.50000 0.00225 ## TweakPsiPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 14 9 / 20 = 0.45000 0.02645 ## TweakHbondSubtree 0 8 6 / 21 = 0.28571 0.01476 ## TweakHbondSegment 0 12 4 / 17 = 0.23529 0.01322 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 10 5 / 12 = 0.41667 0.00129 ## OneRotamer 0 15 3 / 28 = 0.10714 0.01889 ## ClashingRotamer 0 3 1 / 30 = 0.03333 0.01204 ## ClusteredRotamer 0 3 0 / 30 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 149 = 0.07383 0.11505 ## CloseGap 0 4 5 / 109 = 0.04587 0.04962 ## HealGap 0 6 0 / 85 = 0.00000 0.00000 ## MoveGap 0 32 13 / 141 = 0.09220 0.08787 ## ReduceConstraint 0 11 5 / 106 = 0.04717 0.03028 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 23 15 / 430 = 0.03488 0.08397 ## InsertFragment 0 12 6 / 126 = 0.04762 0.03809 ## TwoFragment 0 3 1 / 104 = 0.00962 0.01714 ## CrossOver 3 2 0 / 40 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 83 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 104 = 0.02885 0.02717 # Closing gap before 198 next to short segment # generation 19: best score out of 20: T0287.try5 209.43971 cost/residue, 213 clashes 0.19257 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 5 / 24 = 0.20833 0.01301 ## JiggleSubtree 0 11 3 / 28 = 0.10714 0.03993 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 2 / 7 = 0.28571 0.00562 ## TweakPhiSegment 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 1 / 9 = 0.11111 0.00024 ## TweakPsiSegment 0 8 5 / 11 = 0.45455 0.00205 ## TweakPsiPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 15 10 / 23 = 0.43478 0.02328 ## TweakHbondSubtree 0 8 6 / 21 = 0.28571 0.01476 ## TweakHbondSegment 0 12 4 / 17 = 0.23529 0.01322 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 11 6 / 14 = 0.42857 0.00164 ## OneRotamer 0 16 3 / 30 = 0.10000 0.01763 ## ClashingRotamer 0 3 1 / 31 = 0.03226 0.01165 ## ClusteredRotamer 0 3 0 / 32 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 155 = 0.07097 0.11060 ## CloseGap 0 5 6 / 116 = 0.05172 0.04696 ## HealGap 0 6 0 / 88 = 0.00000 0.00000 ## MoveGap 0 32 13 / 147 = 0.08844 0.08429 ## ReduceConstraint 0 11 5 / 112 = 0.04464 0.02866 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 450 = 0.03333 0.08024 ## InsertFragment 0 12 6 / 132 = 0.04545 0.03636 ## TwoFragment 0 3 1 / 111 = 0.00901 0.01606 ## CrossOver 5 2 0 / 43 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 91 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 109 = 0.02752 0.02592 # generation 20: best score out of 20: T0287.try5 209.18227 cost/residue, 228 clashes 0.19012 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 5 / 25 = 0.20000 0.01249 ## JiggleSubtree 0 14 5 / 33 = 0.15152 0.05287 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 3 / 8 = 0.37500 0.00740 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 1 / 9 = 0.11111 0.00024 ## TweakPsiSegment 0 11 6 / 14 = 0.42857 0.00162 ## TweakPsiPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 16 10 / 24 = 0.41667 0.02231 ## TweakHbondSubtree 0 9 6 / 23 = 0.26087 0.01347 ## TweakHbondSegment 0 13 4 / 20 = 0.20000 0.01124 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 12 6 / 15 = 0.40000 0.00154 ## OneRotamer 0 16 3 / 32 = 0.09375 0.01653 ## ClashingRotamer 0 3 1 / 32 = 0.03125 0.01128 ## ClusteredRotamer 0 3 0 / 33 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 168 = 0.06548 0.10204 ## CloseGap 0 5 6 / 121 = 0.04959 0.04502 ## HealGap 0 6 0 / 92 = 0.00000 0.00000 ## MoveGap 0 32 13 / 158 = 0.08228 0.07842 ## ReduceConstraint 0 11 5 / 115 = 0.04348 0.02791 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 470 = 0.03191 0.07683 ## InsertFragment 0 12 6 / 139 = 0.04317 0.03453 ## TwoFragment 0 3 1 / 114 = 0.00877 0.01564 ## CrossOver 5 2 0 / 45 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 94 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 115 = 0.02609 0.02457 # generation 21: best score out of 20: T0287.try5 209.15144 cost/residue, 230 clashes 0.19051 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 5 / 25 = 0.20000 0.01249 ## JiggleSubtree 1 16 5 / 43 = 0.11628 0.04057 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 3 / 9 = 0.33333 0.00658 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 1 / 9 = 0.11111 0.00024 ## TweakPsiSegment 0 12 6 / 18 = 0.33333 0.00126 ## TweakPsiPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 18 11 / 26 = 0.42308 0.02401 ## TweakHbondSubtree 0 11 7 / 26 = 0.26923 0.01310 ## TweakHbondSegment 0 14 4 / 22 = 0.18182 0.01022 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 13 7 / 16 = 0.43750 0.00226 ## OneRotamer 0 17 3 / 34 = 0.08824 0.01556 ## ClashingRotamer 0 3 1 / 33 = 0.03030 0.01094 ## ClusteredRotamer 0 3 0 / 37 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 179 = 0.06145 0.09577 ## CloseGap 0 5 6 / 128 = 0.04688 0.04256 ## HealGap 0 6 0 / 95 = 0.00000 0.00000 ## MoveGap 0 32 13 / 166 = 0.07831 0.07464 ## ReduceConstraint 0 11 5 / 120 = 0.04167 0.02675 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 484 = 0.03099 0.07460 ## InsertFragment 0 12 6 / 144 = 0.04167 0.03333 ## TwoFragment 0 3 1 / 119 = 0.00840 0.01498 ## CrossOver 5 2 0 / 47 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 95 = 0.00000 0.00000 ## ReduceClash 0 4 3 / 119 = 0.02521 0.02374 # generation 22: best score out of 20: T0287.try5 209.04062 cost/residue, 218 clashes 0.19305 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 5 / 27 = 0.18519 0.01157 ## JiggleSubtree 1 19 6 / 50 = 0.12000 0.03862 ## JiggleSegment 0 5 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 10 = 0.40000 0.00666 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 1 / 10 = 0.10000 0.00022 ## TweakPsiSegment 0 12 6 / 18 = 0.33333 0.00126 ## TweakPsiPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 3 19 12 / 28 = 0.42857 0.02242 ## TweakHbondSubtree 0 14 7 / 30 = 0.23333 0.01136 ## TweakHbondSegment 0 15 4 / 23 = 0.17391 0.00977 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 13 7 / 17 = 0.41176 0.00212 ## OneRotamer 0 18 3 / 35 = 0.08571 0.01511 ## ClashingRotamer 0 3 1 / 36 = 0.02778 0.01003 ## ClusteredRotamer 0 3 0 / 38 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 185 = 0.05946 0.09266 ## CloseGap 0 5 6 / 136 = 0.04412 0.04006 ## HealGap 0 6 0 / 100 = 0.00000 0.00000 ## MoveGap 0 32 13 / 170 = 0.07647 0.07288 ## ReduceConstraint 0 12 6 / 129 = 0.04651 0.02520 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 505 = 0.02970 0.07150 ## InsertFragment 0 12 6 / 150 = 0.04000 0.03200 ## TwoFragment 0 3 1 / 120 = 0.00833 0.01485 ## CrossOver 5 2 0 / 48 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 98 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 125 = 0.03200 0.02374 # generation 23: best score out of 20: T0287.try5 209.04062 cost/residue, 218 clashes 0.19305 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 5 / 29 = 0.17241 0.01077 ## JiggleSubtree 1 21 7 / 53 = 0.13208 0.03813 ## JiggleSegment 0 6 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 11 = 0.36364 0.00605 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 1 / 10 = 0.10000 0.00022 ## TweakPsiSegment 0 13 6 / 19 = 0.31579 0.00119 ## TweakPsiPhiSubtree 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 4 19 12 / 28 = 0.42857 0.02242 ## TweakHbondSubtree 0 14 7 / 30 = 0.23333 0.01136 ## TweakHbondSegment 0 16 4 / 24 = 0.16667 0.00937 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 14 7 / 18 = 0.38889 0.00201 ## OneRotamer 0 21 4 / 40 = 0.10000 0.01392 ## ClashingRotamer 0 3 1 / 38 = 0.02632 0.00950 ## ClusteredRotamer 0 3 0 / 38 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 196 = 0.05612 0.08746 ## CloseGap 0 5 6 / 146 = 0.04110 0.03731 ## HealGap 0 7 0 / 110 = 0.00000 0.00000 ## MoveGap 0 32 13 / 177 = 0.07345 0.07000 ## ReduceConstraint 0 12 6 / 132 = 0.04545 0.02463 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 523 = 0.02868 0.06904 ## InsertFragment 0 13 6 / 158 = 0.03797 0.03038 ## TwoFragment 0 3 1 / 125 = 0.00800 0.01426 ## CrossOver 5 2 0 / 50 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 100 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 129 = 0.03101 0.02300 # generation 24: best score out of 20: T0287.try5 208.92775 cost/residue, 218 clashes 0.19430 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 6 / 31 = 0.19355 0.01304 ## JiggleSubtree 1 21 7 / 60 = 0.11667 0.03368 ## JiggleSegment 0 6 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 11 = 0.36364 0.00605 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 2 / 11 = 0.18182 0.00809 ## TweakPsiSegment 0 13 6 / 19 = 0.31579 0.00119 ## TweakPsiPhiSubtree 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 4 21 13 / 31 = 0.41935 0.02408 ## TweakHbondSubtree 0 15 7 / 31 = 0.22581 0.01099 ## TweakHbondSegment 0 17 5 / 25 = 0.20000 0.01055 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 16 8 / 20 = 0.40000 0.00222 ## OneRotamer 0 23 5 / 43 = 0.11628 0.01522 ## ClashingRotamer 0 3 1 / 38 = 0.02632 0.00950 ## ClusteredRotamer 0 3 0 / 38 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 210 = 0.05238 0.08163 ## CloseGap 0 5 6 / 153 = 0.03922 0.03561 ## HealGap 0 7 0 / 113 = 0.00000 0.00000 ## MoveGap 0 32 13 / 181 = 0.07182 0.06845 ## ReduceConstraint 0 12 6 / 137 = 0.04380 0.02373 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 549 = 0.02732 0.06577 ## InsertFragment 0 13 6 / 162 = 0.03704 0.02963 ## TwoFragment 0 3 1 / 129 = 0.00775 0.01382 ## CrossOver 5 3 1 / 52 = 0.01923 0.00061 ## CrossAndInsert 1 0 0 / 103 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 133 = 0.03008 0.02231 # generation 25: best score out of 20: T0287.try5 208.54155 cost/residue, 214 clashes 0.19430 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 6 / 32 = 0.18750 0.01264 ## JiggleSubtree 1 22 7 / 65 = 0.10769 0.03109 ## JiggleSegment 0 6 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 11 = 0.36364 0.00605 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 13 3 / 16 = 0.18750 0.00569 ## TweakPsiSegment 0 13 6 / 19 = 0.31579 0.00119 ## TweakPsiPhiSubtree 0 6 0 / 7 = 0.00000 0.00000 ## TweakPsiPhiSegment 4 24 14 / 34 = 0.41176 0.02327 ## TweakHbondSubtree 0 16 7 / 33 = 0.21212 0.01032 ## TweakHbondSegment 0 17 5 / 25 = 0.20000 0.01055 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 17 8 / 21 = 0.38095 0.00211 ## OneRotamer 0 25 6 / 48 = 0.12500 0.02168 ## ClashingRotamer 0 3 1 / 39 = 0.02564 0.00926 ## ClusteredRotamer 0 3 0 / 41 = 0.00000 0.00000 ## ReduceBreak 2 18 11 / 222 = 0.04955 0.07722 ## CloseGap 0 5 6 / 158 = 0.03797 0.03448 ## HealGap 0 7 0 / 120 = 0.00000 0.00000 ## MoveGap 0 32 13 / 193 = 0.06736 0.06420 ## ReduceConstraint 0 12 6 / 140 = 0.04286 0.02322 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 563 = 0.02664 0.06414 ## InsertFragment 0 13 6 / 167 = 0.03593 0.02874 ## TwoFragment 0 3 1 / 131 = 0.00763 0.01361 ## CrossOver 5 3 1 / 54 = 0.01852 0.00059 ## CrossAndInsert 1 0 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 138 = 0.02899 0.02150 # generation 26: best score out of 20: T0287.try5 208.48288 cost/residue, 214 clashes 0.19549 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 6 / 32 = 0.18750 0.01264 ## JiggleSubtree 1 22 7 / 66 = 0.10606 0.03062 ## JiggleSegment 0 6 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 10 4 / 13 = 0.30769 0.00512 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 16 4 / 19 = 0.21053 0.00481 ## TweakPsiSegment 0 13 6 / 19 = 0.31579 0.00119 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 4 28 17 / 39 = 0.43590 0.02302 ## TweakHbondSubtree 0 16 7 / 34 = 0.20588 0.01002 ## TweakHbondSegment 0 17 5 / 25 = 0.20000 0.01055 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 18 8 / 22 = 0.36364 0.00202 ## OneRotamer 0 25 6 / 53 = 0.11321 0.01963 ## ClashingRotamer 0 3 1 / 40 = 0.02500 0.00903 ## ClusteredRotamer 0 3 0 / 43 = 0.00000 0.00000 ## ReduceBreak 2 19 11 / 235 = 0.04681 0.07295 ## CloseGap 0 5 6 / 163 = 0.03681 0.03342 ## HealGap 0 7 0 / 122 = 0.00000 0.00000 ## MoveGap 0 32 13 / 201 = 0.06468 0.06164 ## ReduceConstraint 0 12 6 / 143 = 0.04196 0.02274 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 581 = 0.02582 0.06215 ## InsertFragment 0 13 6 / 177 = 0.03390 0.02711 ## TwoFragment 0 3 1 / 138 = 0.00725 0.01292 ## CrossOver 5 4 1 / 57 = 0.01754 0.00056 ## CrossAndInsert 2 0 0 / 108 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 142 = 0.02817 0.02089 # Closing gap before 198 next to short segment # generation 27: best score out of 20: T0287.try5 208.26175 cost/residue, 216 clashes 0.19549 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 6 / 35 = 0.17143 0.01155 ## JiggleSubtree 1 22 8 / 69 = 0.11594 0.03093 ## JiggleSegment 0 6 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 10 4 / 13 = 0.30769 0.00512 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 19 6 / 23 = 0.26087 0.00448 ## TweakPsiSegment 0 14 6 / 21 = 0.28571 0.00108 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 4 33 19 / 46 = 0.41304 0.03024 ## TweakHbondSubtree 0 17 8 / 38 = 0.21053 0.00910 ## TweakHbondSegment 0 18 6 / 26 = 0.23077 0.01019 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 19 9 / 23 = 0.39130 0.00199 ## OneRotamer 0 26 7 / 56 = 0.12500 0.02253 ## ClashingRotamer 0 3 1 / 41 = 0.02439 0.00881 ## ClusteredRotamer 0 3 0 / 44 = 0.00000 0.00000 ## ReduceBreak 2 19 11 / 244 = 0.04508 0.07026 ## CloseGap 0 5 6 / 167 = 0.03593 0.03262 ## HealGap 0 7 0 / 128 = 0.00000 0.00000 ## MoveGap 0 32 13 / 207 = 0.06280 0.05985 ## ReduceConstraint 0 12 6 / 154 = 0.03896 0.02111 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 597 = 0.02513 0.06048 ## InsertFragment 0 13 7 / 181 = 0.03867 0.02818 ## TwoFragment 0 3 1 / 140 = 0.00714 0.01273 ## CrossOver 5 4 1 / 59 = 0.01695 0.00054 ## CrossAndInsert 2 0 0 / 110 = 0.00000 0.00000 ## ReduceClash 0 5 4 / 145 = 0.02759 0.02046 # Closing gap before 146 without wiggling. # generation 28: best score out of 20: T0287.try5 208.08894 cost/residue, 213 clashes 0.19410 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 6 / 36 = 0.16667 0.01123 ## JiggleSubtree 1 22 8 / 74 = 0.10811 0.02884 ## JiggleSegment 0 6 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 11 5 / 15 = 0.33333 0.00445 ## TweakPhiSegment 0 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 20 7 / 24 = 0.29167 0.00434 ## TweakPsiSegment 0 15 7 / 22 = 0.31818 0.00108 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 4 38 21 / 53 = 0.39623 0.02919 ## TweakHbondSubtree 0 17 8 / 38 = 0.21053 0.00910 ## TweakHbondSegment 0 18 6 / 29 = 0.20690 0.00913 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 20 11 / 25 = 0.44000 0.00189 ## OneRotamer 0 26 7 / 59 = 0.11864 0.02138 ## ClashingRotamer 0 3 1 / 43 = 0.02326 0.00840 ## ClusteredRotamer 0 3 0 / 45 = 0.00000 0.00000 ## ReduceBreak 2 19 11 / 259 = 0.04247 0.06619 ## CloseGap 0 5 6 / 173 = 0.03468 0.03149 ## HealGap 0 7 0 / 134 = 0.00000 0.00000 ## MoveGap 0 32 13 / 213 = 0.06103 0.05817 ## ReduceConstraint 0 12 6 / 156 = 0.03846 0.02084 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 614 = 0.02443 0.05881 ## InsertFragment 0 13 7 / 183 = 0.03825 0.02787 ## TwoFragment 0 3 1 / 144 = 0.00694 0.01238 ## CrossOver 5 5 2 / 62 = 0.03226 0.00139 ## CrossAndInsert 2 0 0 / 113 = 0.00000 0.00000 ## ReduceClash 0 6 5 / 149 = 0.03356 0.02107 # generation 29: best score out of 20: T0287.try5 208.06070 cost/residue, 213 clashes 0.19410 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 8 / 40 = 0.20000 0.01112 ## JiggleSubtree 1 22 8 / 79 = 0.10127 0.02701 ## JiggleSegment 0 6 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 5 / 16 = 0.31250 0.00417 ## TweakPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 22 8 / 26 = 0.30769 0.00413 ## TweakPsiSegment 0 16 7 / 23 = 0.30435 0.00103 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 4 41 22 / 58 = 0.37931 0.02924 ## TweakHbondSubtree 0 17 8 / 39 = 0.20513 0.00887 ## TweakHbondSegment 0 20 7 / 34 = 0.20588 0.00892 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 20 11 / 25 = 0.44000 0.00189 ## OneRotamer 0 26 7 / 64 = 0.10938 0.01971 ## ClashingRotamer 0 3 1 / 45 = 0.02222 0.00802 ## ClusteredRotamer 0 3 0 / 46 = 0.00000 0.00000 ## ReduceBreak 2 19 11 / 264 = 0.04167 0.06494 ## CloseGap 0 5 6 / 179 = 0.03352 0.03043 ## HealGap 0 7 0 / 140 = 0.00000 0.00000 ## MoveGap 0 32 13 / 217 = 0.05991 0.05710 ## ReduceConstraint 0 13 6 / 160 = 0.03750 0.02032 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 629 = 0.02385 0.05741 ## InsertFragment 0 13 7 / 188 = 0.03723 0.02713 ## TwoFragment 0 3 1 / 147 = 0.00680 0.01213 ## CrossOver 5 5 2 / 67 = 0.02985 0.00128 ## CrossAndInsert 2 0 0 / 118 = 0.00000 0.00000 ## ReduceClash 0 6 5 / 156 = 0.03205 0.02013 # generation 30: best score out of 20: T0287.try5 208.02492 cost/residue, 214 clashes 0.19495 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 8 / 43 = 0.18605 0.01034 ## JiggleSubtree 1 22 8 / 84 = 0.09524 0.02541 ## JiggleSegment 0 7 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 6 / 18 = 0.33333 0.00371 ## TweakPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 23 8 / 27 = 0.29630 0.00398 ## TweakPsiSegment 0 18 9 / 25 = 0.36000 0.00102 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 6 42 22 / 62 = 0.35484 0.02735 ## TweakHbondSubtree 0 17 8 / 42 = 0.19048 0.00823 ## TweakHbondSegment 0 21 8 / 39 = 0.20513 0.00942 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 22 13 / 27 = 0.48148 0.00218 ## OneRotamer 0 27 8 / 70 = 0.11429 0.01809 ## ClashingRotamer 0 3 1 / 48 = 0.02083 0.00752 ## ClusteredRotamer 0 3 0 / 47 = 0.00000 0.00000 ## ReduceBreak 2 19 11 / 273 = 0.04029 0.06279 ## CloseGap 0 5 6 / 185 = 0.03243 0.02945 ## HealGap 0 7 0 / 143 = 0.00000 0.00000 ## MoveGap 0 32 13 / 219 = 0.05936 0.05657 ## ReduceConstraint 0 13 6 / 164 = 0.03659 0.01982 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 644 = 0.02329 0.05607 ## InsertFragment 0 13 7 / 193 = 0.03627 0.02643 ## TwoFragment 0 3 1 / 151 = 0.00662 0.01180 ## CrossOver 5 5 2 / 68 = 0.02941 0.00127 ## CrossAndInsert 2 0 0 / 119 = 0.00000 0.00000 ## ReduceClash 0 6 5 / 164 = 0.03049 0.01915 # generation 31: best score out of 20: T0287.try5 208.01656 cost/residue, 214 clashes 0.19495 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 8 / 44 = 0.18182 0.01011 ## JiggleSubtree 1 22 8 / 89 = 0.08989 0.02398 ## JiggleSegment 0 7 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 16 6 / 21 = 0.28571 0.00318 ## TweakPhiSegment 1 4 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 23 8 / 29 = 0.27586 0.00370 ## TweakPsiSegment 0 18 9 / 26 = 0.34615 0.00098 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 6 46 24 / 71 = 0.33803 0.02397 ## TweakHbondSubtree 0 17 8 / 43 = 0.18605 0.00804 ## TweakHbondSegment 0 22 9 / 42 = 0.21429 0.00958 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 26 15 / 31 = 0.48387 0.00235 ## OneRotamer 0 27 8 / 75 = 0.10667 0.01688 ## ClashingRotamer 0 3 1 / 48 = 0.02083 0.00752 ## ClusteredRotamer 0 3 0 / 51 = 0.00000 0.00000 ## ReduceBreak 2 19 11 / 282 = 0.03901 0.06079 ## CloseGap 0 5 6 / 190 = 0.03158 0.02867 ## HealGap 0 7 0 / 145 = 0.00000 0.00000 ## MoveGap 0 32 13 / 227 = 0.05727 0.05458 ## ReduceConstraint 0 13 6 / 167 = 0.03593 0.01947 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 15 / 658 = 0.02280 0.05488 ## InsertFragment 0 13 7 / 200 = 0.03500 0.02550 ## TwoFragment 0 3 1 / 157 = 0.00637 0.01135 ## CrossOver 5 5 2 / 69 = 0.02899 0.00125 ## CrossAndInsert 2 0 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 6 5 / 167 = 0.02994 0.01880 # generation 32: best score out of 20: T0287.try5 207.86385 cost/residue, 213 clashes 0.18029 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 8 / 45 = 0.17778 0.00988 ## JiggleSubtree 1 22 8 / 91 = 0.08791 0.02345 ## JiggleSegment 0 7 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 17 7 / 24 = 0.29167 0.00278 ## TweakPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 25 9 / 32 = 0.28125 0.00356 ## TweakPsiSegment 0 20 9 / 28 = 0.32143 0.00091 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 7 47 24 / 73 = 0.32877 0.02331 ## TweakHbondSubtree 0 18 9 / 46 = 0.19565 0.00754 ## TweakHbondSegment 0 23 9 / 43 = 0.20930 0.00936 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 26 15 / 33 = 0.45455 0.00220 ## OneRotamer 0 28 9 / 80 = 0.11250 0.01760 ## ClashingRotamer 0 3 1 / 49 = 0.02041 0.00737 ## ClusteredRotamer 0 3 0 / 52 = 0.00000 0.00000 ## ReduceBreak 3 19 11 / 291 = 0.03780 0.05891 ## CloseGap 0 5 6 / 195 = 0.03077 0.02794 ## HealGap 0 7 0 / 150 = 0.00000 0.00000 ## MoveGap 0 32 13 / 235 = 0.05532 0.05272 ## ReduceConstraint 0 13 6 / 171 = 0.03509 0.01901 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 671 = 0.02385 0.05414 ## InsertFragment 0 13 7 / 207 = 0.03382 0.02464 ## TwoFragment 0 3 1 / 165 = 0.00606 0.01080 ## CrossOver 5 6 2 / 70 = 0.02857 0.00123 ## CrossAndInsert 2 0 0 / 127 = 0.00000 0.00000 ## ReduceClash 0 6 5 / 171 = 0.02924 0.01836 # generation 33: best score out of 20: T0287.try5 207.31721 cost/residue, 223 clashes 0.19048 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 8 / 50 = 0.16000 0.00890 ## JiggleSubtree 1 22 8 / 97 = 0.08247 0.02200 ## JiggleSegment 0 7 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 18 7 / 25 = 0.28000 0.00267 ## TweakPhiSegment 1 5 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 26 10 / 33 = 0.30303 0.02464 ## TweakPsiSegment 0 21 9 / 29 = 0.31034 0.00088 ## TweakPsiPhiSubtree 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSegment 7 48 24 / 80 = 0.30000 0.02127 ## TweakHbondSubtree 1 18 9 / 47 = 0.19149 0.00738 ## TweakHbondSegment 0 26 11 / 51 = 0.21569 0.00928 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 26 15 / 33 = 0.45455 0.00220 ## OneRotamer 0 31 10 / 86 = 0.11628 0.01858 ## ClashingRotamer 0 3 1 / 51 = 0.01961 0.00708 ## ClusteredRotamer 0 3 0 / 55 = 0.00000 0.00000 ## ReduceBreak 3 19 11 / 295 = 0.03729 0.05811 ## CloseGap 0 5 6 / 199 = 0.03015 0.02738 ## HealGap 0 7 0 / 150 = 0.00000 0.00000 ## MoveGap 0 32 13 / 242 = 0.05372 0.05120 ## ReduceConstraint 0 13 6 / 175 = 0.03429 0.01858 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 686 = 0.02332 0.05295 ## InsertFragment 0 13 7 / 213 = 0.03286 0.02395 ## TwoFragment 0 3 1 / 166 = 0.00602 0.01074 ## CrossOver 5 6 2 / 76 = 0.02632 0.00113 ## CrossAndInsert 2 0 0 / 133 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 175 = 0.02857 0.01794 # generation 34: best score out of 20: T0287.try5 207.06880 cost/residue, 215 clashes 0.19048 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 8 / 54 = 0.14815 0.00824 ## JiggleSubtree 1 22 8 / 101 = 0.07921 0.02113 ## JiggleSegment 0 7 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 19 7 / 26 = 0.26923 0.00257 ## TweakPhiSegment 1 6 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 31 15 / 44 = 0.34091 0.01912 ## TweakPsiSegment 0 21 9 / 29 = 0.31034 0.00088 ## TweakPsiPhiSubtree 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 7 51 26 / 88 = 0.29545 0.01990 ## TweakHbondSubtree 1 18 9 / 48 = 0.18750 0.00723 ## TweakHbondSegment 0 27 11 / 53 = 0.20755 0.00893 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 27 15 / 34 = 0.44118 0.00214 ## OneRotamer 0 34 12 / 90 = 0.13333 0.02245 ## ClashingRotamer 0 3 1 / 51 = 0.01961 0.00708 ## ClusteredRotamer 0 3 0 / 55 = 0.00000 0.00000 ## ReduceBreak 3 19 11 / 305 = 0.03607 0.05621 ## CloseGap 0 5 6 / 203 = 0.02956 0.02684 ## HealGap 0 7 0 / 155 = 0.00000 0.00000 ## MoveGap 0 32 13 / 250 = 0.05200 0.04956 ## ReduceConstraint 0 13 6 / 179 = 0.03352 0.01816 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 702 = 0.02279 0.05175 ## InsertFragment 0 13 7 / 216 = 0.03241 0.02361 ## TwoFragment 0 3 1 / 170 = 0.00588 0.01049 ## CrossOver 5 6 2 / 76 = 0.02632 0.00113 ## CrossAndInsert 2 0 0 / 134 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 177 = 0.02825 0.01774 # generation 35: best score out of 20: T0287.try5 206.99643 cost/residue, 214 clashes 0.19280 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 9 / 56 = 0.16071 0.00808 ## JiggleSubtree 1 22 8 / 106 = 0.07547 0.02013 ## JiggleSegment 0 7 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 7 / 28 = 0.25000 0.00238 ## TweakPhiSegment 1 6 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 34 20 / 51 = 0.39216 0.02106 ## TweakPsiSegment 0 22 9 / 30 = 0.30000 0.00085 ## TweakPsiPhiSubtree 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 7 57 29 / 94 = 0.30851 0.02149 ## TweakHbondSubtree 1 19 10 / 51 = 0.19608 0.00815 ## TweakHbondSegment 0 28 12 / 55 = 0.21818 0.01480 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 27 15 / 35 = 0.42857 0.00208 ## OneRotamer 0 35 13 / 99 = 0.13131 0.02057 ## ClashingRotamer 0 3 1 / 52 = 0.01923 0.00694 ## ClusteredRotamer 0 3 0 / 56 = 0.00000 0.00000 ## ReduceBreak 3 19 11 / 310 = 0.03548 0.05530 ## CloseGap 0 5 6 / 209 = 0.02871 0.02607 ## HealGap 0 7 0 / 156 = 0.00000 0.00000 ## MoveGap 0 32 13 / 253 = 0.05138 0.04897 ## ReduceConstraint 0 14 6 / 187 = 0.03209 0.01739 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 716 = 0.02235 0.05073 ## InsertFragment 0 13 7 / 220 = 0.03182 0.02318 ## TwoFragment 0 3 1 / 175 = 0.00571 0.01019 ## CrossOver 5 6 2 / 77 = 0.02597 0.00112 ## CrossAndInsert 2 0 0 / 137 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 183 = 0.02732 0.01716 # Closing gap before 146 without wiggling. # generation 36: best score out of 20: T0287.try5 206.96689 cost/residue, 213 clashes 0.19227 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 9 / 56 = 0.16071 0.00808 ## JiggleSubtree 1 22 8 / 109 = 0.07339 0.01958 ## JiggleSegment 0 7 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 7 / 29 = 0.24138 0.00230 ## TweakPhiSegment 1 6 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 39 25 / 67 = 0.37313 0.01636 ## TweakPsiSegment 0 23 9 / 31 = 0.29032 0.00082 ## TweakPsiPhiSubtree 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 7 60 30 / 99 = 0.30303 0.02045 ## TweakHbondSubtree 1 20 10 / 52 = 0.19231 0.00800 ## TweakHbondSegment 0 30 14 / 64 = 0.21875 0.01445 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 28 16 / 36 = 0.44444 0.00211 ## OneRotamer 0 35 13 / 102 = 0.12745 0.01997 ## ClashingRotamer 0 3 1 / 52 = 0.01923 0.00694 ## ClusteredRotamer 0 3 0 / 59 = 0.00000 0.00000 ## ReduceBreak 3 19 11 / 315 = 0.03492 0.05442 ## CloseGap 0 5 6 / 212 = 0.02830 0.02570 ## HealGap 0 8 0 / 162 = 0.00000 0.00000 ## MoveGap 0 32 13 / 258 = 0.05039 0.04802 ## ReduceConstraint 0 14 6 / 189 = 0.03175 0.01720 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 731 = 0.02189 0.04969 ## InsertFragment 0 13 7 / 224 = 0.03125 0.02277 ## TwoFragment 0 3 1 / 179 = 0.00559 0.00996 ## CrossOver 5 6 2 / 79 = 0.02532 0.00109 ## CrossAndInsert 2 1 0 / 141 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 186 = 0.02688 0.01688 # generation 37: best score out of 20: T0287.try5 206.71181 cost/residue, 216 clashes 0.19315 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 9 / 56 = 0.16071 0.00808 ## JiggleSubtree 1 22 8 / 114 = 0.07018 0.01872 ## JiggleSegment 0 7 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 7 / 30 = 0.23333 0.00223 ## TweakPhiSegment 1 6 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 44 26 / 75 = 0.34667 0.01466 ## TweakPsiSegment 0 27 12 / 36 = 0.33333 0.00855 ## TweakPsiPhiSubtree 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 8 61 30 / 101 = 0.29703 0.02005 ## TweakHbondSubtree 1 20 10 / 52 = 0.19231 0.00800 ## TweakHbondSegment 0 30 14 / 66 = 0.21212 0.01401 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 28 16 / 37 = 0.43243 0.00205 ## OneRotamer 0 36 13 / 110 = 0.11818 0.01852 ## ClashingRotamer 0 3 1 / 52 = 0.01923 0.00694 ## ClusteredRotamer 0 3 0 / 61 = 0.00000 0.00000 ## ReduceBreak 3 19 11 / 320 = 0.03438 0.05357 ## CloseGap 0 5 6 / 217 = 0.02765 0.02510 ## HealGap 0 8 0 / 165 = 0.00000 0.00000 ## MoveGap 0 32 13 / 261 = 0.04981 0.04747 ## ReduceConstraint 0 14 6 / 194 = 0.03093 0.01676 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 753 = 0.02258 0.04829 ## InsertFragment 0 13 7 / 230 = 0.03043 0.02218 ## TwoFragment 0 3 1 / 186 = 0.00538 0.00958 ## CrossOver 5 6 2 / 81 = 0.02469 0.00106 ## CrossAndInsert 2 1 0 / 143 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 188 = 0.02660 0.01670 # generation 38: best score out of 20: T0287.try5 206.70848 cost/residue, 216 clashes 0.19315 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 9 / 59 = 0.15254 0.00767 ## JiggleSubtree 1 22 8 / 116 = 0.06897 0.01840 ## JiggleSegment 0 7 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 1 / 32 = 0.03125 0.00012 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 7 / 30 = 0.23333 0.00223 ## TweakPhiSegment 1 6 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 47 28 / 80 = 0.35000 0.01379 ## TweakPsiSegment 0 29 14 / 40 = 0.35000 0.00972 ## TweakPsiPhiSubtree 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSegment 8 62 30 / 103 = 0.29126 0.01966 ## TweakHbondSubtree 1 21 11 / 56 = 0.19643 0.00879 ## TweakHbondSegment 0 33 14 / 72 = 0.19444 0.01285 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 28 16 / 37 = 0.43243 0.00205 ## OneRotamer 0 38 14 / 115 = 0.12174 0.01964 ## ClashingRotamer 0 3 1 / 53 = 0.01887 0.00681 ## ClusteredRotamer 0 3 0 / 63 = 0.00000 0.00000 ## ReduceBreak 3 19 11 / 320 = 0.03438 0.05357 ## CloseGap 0 5 6 / 222 = 0.02703 0.02454 ## HealGap 0 8 0 / 167 = 0.00000 0.00000 ## MoveGap 0 32 13 / 268 = 0.04851 0.04623 ## ReduceConstraint 0 15 7 / 199 = 0.03518 0.01672 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 769 = 0.02211 0.04728 ## InsertFragment 0 13 7 / 237 = 0.02954 0.02152 ## TwoFragment 0 3 1 / 188 = 0.00532 0.00948 ## CrossOver 5 6 2 / 86 = 0.02326 0.00100 ## CrossAndInsert 2 1 0 / 148 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 197 = 0.02538 0.01594 # Closing gap before 11 without wiggling. # generation 39: best score out of 20: T0287.try5 206.68159 cost/residue, 211 clashes 0.19425 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 9 / 60 = 0.15000 0.00754 ## JiggleSubtree 1 22 8 / 118 = 0.06780 0.01809 ## JiggleSegment 0 7 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 1 / 33 = 0.03030 0.00012 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 7 / 30 = 0.23333 0.00223 ## TweakPhiSegment 1 6 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 49 30 / 84 = 0.35714 0.01320 ## TweakPsiSegment 0 31 15 / 47 = 0.31915 0.00830 ## TweakPsiPhiSubtree 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSegment 9 64 32 / 106 = 0.30189 0.01926 ## TweakHbondSubtree 1 23 12 / 61 = 0.19672 0.00925 ## TweakHbondSegment 0 34 15 / 75 = 0.20000 0.01261 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 30 17 / 40 = 0.42500 0.00198 ## OneRotamer 0 38 14 / 121 = 0.11570 0.01867 ## ClashingRotamer 0 3 1 / 53 = 0.01887 0.00681 ## ClusteredRotamer 0 4 1 / 64 = 0.01562 0.00064 ## ReduceBreak 3 19 11 / 326 = 0.03374 0.05259 ## CloseGap 0 6 6 / 226 = 0.02655 0.02410 ## HealGap 0 8 0 / 170 = 0.00000 0.00000 ## MoveGap 0 32 13 / 273 = 0.04762 0.04538 ## ReduceConstraint 0 15 7 / 209 = 0.03349 0.01592 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 788 = 0.02157 0.04614 ## InsertFragment 0 13 7 / 241 = 0.02905 0.02116 ## TwoFragment 0 3 1 / 192 = 0.00521 0.00928 ## CrossOver 5 7 2 / 87 = 0.02299 0.00099 ## CrossAndInsert 2 1 0 / 149 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 198 = 0.02525 0.01586 # Closing gap before 11 # generation 40: best score out of 20: T0287.try5 206.57872 cost/residue, 215 clashes 0.19315 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 9 / 62 = 0.14516 0.00729 ## JiggleSubtree 1 22 8 / 121 = 0.06612 0.01764 ## JiggleSegment 0 7 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 1 1 / 34 = 0.02941 0.00012 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 7 / 30 = 0.23333 0.00223 ## TweakPhiSegment 1 6 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 51 30 / 87 = 0.34483 0.01274 ## TweakPsiSegment 0 35 18 / 53 = 0.33962 0.00886 ## TweakPsiPhiSubtree 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSegment 10 67 32 / 112 = 0.28571 0.01823 ## TweakHbondSubtree 1 25 13 / 68 = 0.19118 0.00938 ## TweakHbondSegment 0 34 15 / 80 = 0.18750 0.01183 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 30 17 / 40 = 0.42500 0.00198 ## OneRotamer 0 39 15 / 128 = 0.11719 0.01869 ## ClashingRotamer 0 3 1 / 54 = 0.01852 0.00669 ## ClusteredRotamer 0 4 1 / 66 = 0.01515 0.00062 ## ReduceBreak 3 19 11 / 333 = 0.03303 0.05148 ## CloseGap 0 6 6 / 230 = 0.02609 0.02369 ## HealGap 0 8 0 / 171 = 0.00000 0.00000 ## MoveGap 0 32 13 / 282 = 0.04610 0.04394 ## ReduceConstraint 0 15 7 / 213 = 0.03286 0.01562 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 803 = 0.02117 0.04528 ## InsertFragment 0 13 7 / 244 = 0.02869 0.02090 ## TwoFragment 0 3 1 / 194 = 0.00515 0.00919 ## CrossOver 5 7 2 / 87 = 0.02299 0.00099 ## CrossAndInsert 2 1 0 / 154 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 203 = 0.02463 0.01547 # generation 41: best score out of 20: T0287.try5 206.23784 cost/residue, 213 clashes 0.19315 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 9 / 64 = 0.14062 0.00707 ## JiggleSubtree 1 22 8 / 123 = 0.06504 0.01735 ## JiggleSegment 0 7 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 1 1 / 34 = 0.02941 0.00012 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 7 / 30 = 0.23333 0.00223 ## TweakPhiSegment 1 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 54 31 / 91 = 0.34066 0.01223 ## TweakPsiSegment 0 37 20 / 63 = 0.31746 0.00936 ## TweakPsiPhiSubtree 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSegment 11 68 34 / 118 = 0.28814 0.01742 ## TweakHbondSubtree 1 28 15 / 73 = 0.20548 0.01046 ## TweakHbondSegment 0 37 15 / 85 = 0.17647 0.01113 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 30 18 / 41 = 0.43902 0.00202 ## OneRotamer 0 42 17 / 138 = 0.12319 0.02051 ## ClashingRotamer 0 3 1 / 54 = 0.01852 0.00669 ## ClusteredRotamer 0 4 1 / 69 = 0.01449 0.00059 ## ReduceBreak 3 19 11 / 336 = 0.03274 0.05102 ## CloseGap 0 6 6 / 232 = 0.02586 0.02348 ## HealGap 0 8 0 / 172 = 0.00000 0.00000 ## MoveGap 0 32 13 / 286 = 0.04545 0.04332 ## ReduceConstraint 0 15 7 / 217 = 0.03226 0.01533 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 817 = 0.02081 0.04450 ## InsertFragment 0 13 7 / 251 = 0.02789 0.02032 ## TwoFragment 0 3 1 / 196 = 0.00510 0.00909 ## CrossOver 5 7 2 / 89 = 0.02247 0.00097 ## CrossAndInsert 2 1 0 / 159 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 208 = 0.02404 0.01510 # generation 42: best score out of 20: T0287.try5 206.20380 cost/residue, 211 clashes 0.19315 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 9 / 65 = 0.13846 0.00696 ## JiggleSubtree 1 22 8 / 125 = 0.06400 0.01707 ## JiggleSegment 0 7 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 1 1 / 35 = 0.02857 0.00011 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 7 / 31 = 0.22581 0.00215 ## TweakPhiSegment 1 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 55 32 / 94 = 0.34043 0.01185 ## TweakPsiSegment 0 39 21 / 68 = 0.30882 0.00873 ## TweakPsiPhiSubtree 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 70 36 / 123 = 0.29268 0.01758 ## TweakHbondSubtree 1 30 17 / 82 = 0.20732 0.01038 ## TweakHbondSegment 0 39 16 / 93 = 0.17204 0.01113 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 31 19 / 43 = 0.44186 0.00197 ## OneRotamer 0 45 20 / 146 = 0.13699 0.02109 ## ClashingRotamer 0 3 1 / 55 = 0.01818 0.00656 ## ClusteredRotamer 0 4 1 / 71 = 0.01408 0.00057 ## ReduceBreak 3 19 11 / 341 = 0.03226 0.05027 ## CloseGap 0 6 6 / 237 = 0.02532 0.02299 ## HealGap 0 8 0 / 174 = 0.00000 0.00000 ## MoveGap 0 32 13 / 290 = 0.04483 0.04272 ## ReduceConstraint 0 15 7 / 218 = 0.03211 0.01526 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 833 = 0.02041 0.04365 ## InsertFragment 0 13 7 / 258 = 0.02713 0.01977 ## TwoFragment 0 3 1 / 198 = 0.00505 0.00900 ## CrossOver 5 7 2 / 90 = 0.02222 0.00096 ## CrossAndInsert 2 1 0 / 163 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 211 = 0.02370 0.01488 # generation 43: best score out of 20: T0287.try5 206.17953 cost/residue, 213 clashes 0.19321 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 9 / 65 = 0.13846 0.00696 ## JiggleSubtree 1 22 8 / 126 = 0.06349 0.01694 ## JiggleSegment 0 7 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 1 1 / 37 = 0.02703 0.00011 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 7 / 31 = 0.22581 0.00215 ## TweakPhiSegment 1 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 55 32 / 96 = 0.33333 0.01160 ## TweakPsiSegment 0 41 21 / 74 = 0.28378 0.00802 ## TweakPsiPhiSubtree 0 7 0 / 11 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 72 37 / 127 = 0.29134 0.01713 ## TweakHbondSubtree 1 34 19 / 90 = 0.21111 0.01034 ## TweakHbondSegment 0 39 16 / 97 = 0.16495 0.01067 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 32 20 / 45 = 0.44444 0.00213 ## OneRotamer 0 48 21 / 157 = 0.13376 0.02005 ## ClashingRotamer 0 3 1 / 57 = 0.01754 0.00633 ## ClusteredRotamer 0 4 1 / 76 = 0.01316 0.00054 ## ReduceBreak 3 19 11 / 344 = 0.03198 0.04983 ## CloseGap 0 6 6 / 237 = 0.02532 0.02299 ## HealGap 0 8 0 / 175 = 0.00000 0.00000 ## MoveGap 0 32 13 / 297 = 0.04377 0.04172 ## ReduceConstraint 0 15 7 / 222 = 0.03153 0.01499 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 851 = 0.01998 0.04272 ## InsertFragment 0 13 7 / 265 = 0.02642 0.01925 ## TwoFragment 0 3 1 / 200 = 0.00500 0.00891 ## CrossOver 5 7 2 / 91 = 0.02198 0.00095 ## CrossAndInsert 2 1 0 / 163 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 216 = 0.02315 0.01454 # Closing gap before 119 without wiggling. # generation 44: best score out of 20: T0287.try5 205.65086 cost/residue, 206 clashes 0.19315 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 9 / 67 = 0.13433 0.00675 ## JiggleSubtree 1 22 8 / 130 = 0.06154 0.01642 ## JiggleSegment 0 7 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 1 1 / 38 = 0.02632 0.00011 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 22 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 7 / 32 = 0.21875 0.00209 ## TweakPhiSegment 1 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 57 34 / 99 = 0.34343 0.01149 ## TweakPsiSegment 0 44 23 / 80 = 0.28750 0.00878 ## TweakPsiPhiSubtree 0 7 0 / 11 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 74 39 / 131 = 0.29771 0.01708 ## TweakHbondSubtree 1 36 20 / 94 = 0.21277 0.01083 ## TweakHbondSegment 0 40 16 / 102 = 0.15686 0.01015 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 33 20 / 48 = 0.41667 0.00200 ## OneRotamer 0 50 22 / 168 = 0.13095 0.02203 ## ClashingRotamer 0 3 1 / 58 = 0.01724 0.00623 ## ClusteredRotamer 0 4 1 / 77 = 0.01299 0.00053 ## ReduceBreak 3 19 11 / 351 = 0.03134 0.04884 ## CloseGap 0 6 6 / 242 = 0.02479 0.02251 ## HealGap 0 8 0 / 177 = 0.00000 0.00000 ## MoveGap 0 32 13 / 301 = 0.04319 0.04116 ## ReduceConstraint 0 15 7 / 227 = 0.03084 0.01466 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 864 = 0.01968 0.04208 ## InsertFragment 0 13 7 / 268 = 0.02612 0.01903 ## TwoFragment 0 3 1 / 201 = 0.00498 0.00887 ## CrossOver 5 7 3 / 94 = 0.03191 0.00104 ## CrossAndInsert 2 1 0 / 167 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 220 = 0.02273 0.01427 # generation 45: best score out of 20: T0287.try5 204.63872 cost/residue, 215 clashes 0.16297 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 11 / 69 = 0.15942 0.00696 ## JiggleSubtree 1 22 8 / 130 = 0.06154 0.01642 ## JiggleSegment 0 7 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 2 2 / 39 = 0.05128 0.02605 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 21 7 / 34 = 0.20588 0.00196 ## TweakPhiSegment 1 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 59 34 / 107 = 0.31776 0.01063 ## TweakPsiSegment 0 49 27 / 90 = 0.30000 0.00862 ## TweakPsiPhiSubtree 0 7 0 / 11 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 77 42 / 136 = 0.30882 0.01993 ## TweakHbondSubtree 1 39 22 / 97 = 0.22680 0.01130 ## TweakHbondSegment 0 40 16 / 102 = 0.15686 0.01015 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 33 20 / 49 = 0.40816 0.00196 ## OneRotamer 0 52 23 / 179 = 0.12849 0.02288 ## ClashingRotamer 0 3 1 / 59 = 0.01695 0.00612 ## ClusteredRotamer 0 4 1 / 78 = 0.01282 0.00052 ## ReduceBreak 4 19 11 / 357 = 0.03081 0.04802 ## CloseGap 0 6 6 / 245 = 0.02449 0.02224 ## HealGap 0 8 0 / 178 = 0.00000 0.00000 ## MoveGap 0 32 13 / 308 = 0.04221 0.04023 ## ReduceConstraint 0 15 7 / 229 = 0.03057 0.01453 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 877 = 0.01938 0.04146 ## InsertFragment 0 13 7 / 271 = 0.02583 0.01882 ## TwoFragment 0 3 1 / 206 = 0.00485 0.00865 ## CrossOver 5 7 3 / 96 = 0.03125 0.00102 ## CrossAndInsert 2 1 0 / 173 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 224 = 0.02232 0.01402 # generation 46: best score out of 20: T0287.try5 204.55055 cost/residue, 223 clashes 0.16321 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 11 / 70 = 0.15714 0.00686 ## JiggleSubtree 1 22 8 / 131 = 0.06107 0.01629 ## JiggleSegment 0 7 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 4 2 / 75 = 0.02667 0.01355 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 22 7 / 35 = 0.20000 0.00191 ## TweakPhiSegment 1 6 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 62 36 / 110 = 0.32727 0.01051 ## TweakPsiSegment 0 51 29 / 92 = 0.31522 0.00934 ## TweakPsiPhiSubtree 0 7 0 / 11 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 78 42 / 139 = 0.30216 0.01950 ## TweakHbondSubtree 1 39 22 / 98 = 0.22449 0.01118 ## TweakHbondSegment 0 42 17 / 105 = 0.16190 0.00988 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 33 20 / 50 = 0.40000 0.00192 ## OneRotamer 0 53 24 / 185 = 0.12973 0.02239 ## ClashingRotamer 0 3 1 / 59 = 0.01695 0.00612 ## ClusteredRotamer 0 4 1 / 78 = 0.01282 0.00052 ## ReduceBreak 4 20 11 / 364 = 0.03022 0.04710 ## CloseGap 0 6 6 / 251 = 0.02390 0.02170 ## HealGap 0 8 0 / 182 = 0.00000 0.00000 ## MoveGap 0 32 13 / 310 = 0.04194 0.03997 ## ReduceConstraint 0 16 7 / 233 = 0.03004 0.01428 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 884 = 0.01923 0.04113 ## InsertFragment 0 14 8 / 273 = 0.02930 0.01901 ## TwoFragment 0 3 1 / 207 = 0.00483 0.00861 ## CrossOver 5 8 3 / 99 = 0.03030 0.00099 ## CrossAndInsert 2 1 0 / 174 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 227 = 0.02203 0.01383 # Closing gap before 104 next to short segment # generation 47: best score out of 20: T0287.try5 204.31625 cost/residue, 215 clashes 0.16330 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 13 / 72 = 0.18056 0.01098 ## JiggleSubtree 1 22 8 / 132 = 0.06061 0.01617 ## JiggleSegment 0 7 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 4 2 / 85 = 0.02353 0.01195 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 0 63 36 / 111 = 0.32432 0.01042 ## TweakPsiSegment 0 54 31 / 95 = 0.32632 0.00905 ## TweakPsiPhiSubtree 0 7 0 / 11 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 81 45 / 146 = 0.30822 0.01901 ## TweakHbondSubtree 1 39 22 / 102 = 0.21569 0.01074 ## TweakHbondSegment 0 43 17 / 109 = 0.15596 0.00952 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 33 20 / 51 = 0.39216 0.00188 ## OneRotamer 0 54 25 / 195 = 0.12821 0.02152 ## ClashingRotamer 0 3 1 / 62 = 0.01613 0.00582 ## ClusteredRotamer 0 4 1 / 79 = 0.01266 0.00052 ## ReduceBreak 4 20 11 / 366 = 0.03005 0.04684 ## CloseGap 0 6 6 / 254 = 0.02362 0.02145 ## HealGap 0 9 1 / 188 = 0.00532 0.00016 ## MoveGap 0 32 13 / 313 = 0.04153 0.03958 ## ReduceConstraint 0 16 7 / 236 = 0.02966 0.01410 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 897 = 0.01895 0.04053 ## InsertFragment 0 14 8 / 280 = 0.02857 0.01853 ## TwoFragment 0 3 1 / 210 = 0.00476 0.00849 ## CrossOver 5 8 3 / 101 = 0.02970 0.00097 ## CrossAndInsert 2 1 0 / 179 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 230 = 0.02174 0.01365 # Closing gap before 104 next to short segment # generation 48: best score out of 20: T0287.try5 204.29469 cost/residue, 215 clashes 0.16337 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 16 / 81 = 0.19753 0.01023 ## JiggleSubtree 1 22 8 / 133 = 0.06015 0.01605 ## JiggleSegment 0 7 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 5 2 / 93 = 0.02151 0.01093 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 6 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 0 64 36 / 113 = 0.31858 0.01023 ## TweakPsiSegment 0 54 31 / 96 = 0.32292 0.00896 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 84 47 / 151 = 0.31126 0.01876 ## TweakHbondSubtree 1 40 22 / 104 = 0.21154 0.01054 ## TweakHbondSegment 0 43 17 / 112 = 0.15179 0.00926 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 34 20 / 52 = 0.38462 0.00185 ## OneRotamer 0 54 25 / 204 = 0.12255 0.02057 ## ClashingRotamer 0 3 1 / 62 = 0.01613 0.00582 ## ClusteredRotamer 0 4 1 / 80 = 0.01250 0.00051 ## ReduceBreak 4 20 11 / 368 = 0.02989 0.04658 ## CloseGap 0 6 6 / 256 = 0.02344 0.02128 ## HealGap 0 9 1 / 190 = 0.00526 0.00016 ## MoveGap 0 32 13 / 322 = 0.04037 0.03848 ## ReduceConstraint 0 16 7 / 241 = 0.02905 0.01381 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 919 = 0.01850 0.03956 ## InsertFragment 0 14 8 / 284 = 0.02817 0.01827 ## TwoFragment 0 3 1 / 212 = 0.00472 0.00841 ## CrossOver 5 8 3 / 102 = 0.02941 0.00096 ## CrossAndInsert 2 1 0 / 182 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 233 = 0.02146 0.01348 # generation 49: best score out of 20: T0287.try5 204.26628 cost/residue, 215 clashes 0.16341 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 16 / 88 = 0.18182 0.00941 ## JiggleSubtree 1 22 8 / 133 = 0.06015 0.01605 ## JiggleSegment 0 7 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 5 2 / 100 = 0.02000 0.01016 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 8 0 / 12 = 0.00000 0.00000 ## TweakPsiSubtree 0 65 37 / 119 = 0.31092 0.00973 ## TweakPsiSegment 0 58 33 / 105 = 0.31429 0.00830 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 13 86 49 / 155 = 0.31613 0.01850 ## TweakHbondSubtree 1 41 22 / 106 = 0.20755 0.01034 ## TweakHbondSegment 0 44 18 / 114 = 0.15789 0.00994 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 34 20 / 53 = 0.37736 0.00181 ## OneRotamer 0 56 25 / 213 = 0.11737 0.01971 ## ClashingRotamer 0 3 1 / 63 = 0.01587 0.00573 ## ClusteredRotamer 0 4 1 / 81 = 0.01235 0.00050 ## ReduceBreak 4 20 11 / 373 = 0.02949 0.04596 ## CloseGap 0 6 6 / 264 = 0.02273 0.02064 ## HealGap 0 9 2 / 194 = 0.01031 0.00018 ## MoveGap 0 32 13 / 326 = 0.03988 0.03801 ## ReduceConstraint 0 16 7 / 244 = 0.02869 0.01364 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 931 = 0.01826 0.03905 ## InsertFragment 0 14 8 / 288 = 0.02778 0.01802 ## TwoFragment 0 3 1 / 215 = 0.00465 0.00829 ## CrossOver 5 8 3 / 105 = 0.02857 0.00093 ## CrossAndInsert 2 1 0 / 182 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 235 = 0.02128 0.01336 # Closing gap before 198 next to short segment # Closing gap before 197 next to short segment # Closing gap before 119 # generation 50: best score out of 20: T0287.try5 204.15135 cost/residue, 215 clashes 0.16464 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 33 17 / 94 = 0.18085 0.00891 ## JiggleSubtree 1 23 8 / 134 = 0.05970 0.01593 ## JiggleSegment 0 7 0 / 19 = 0.00000 0.00000 ## OptSubtree 1 5 2 / 106 = 0.01887 0.00959 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 67 39 / 122 = 0.31967 0.01097 ## TweakPsiSegment 0 58 33 / 106 = 0.31132 0.00822 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 15 89 51 / 163 = 0.31288 0.01874 ## TweakHbondSubtree 1 43 24 / 113 = 0.21239 0.01026 ## TweakHbondSegment 0 46 19 / 116 = 0.16379 0.01008 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 34 20 / 55 = 0.36364 0.00175 ## OneRotamer 0 58 27 / 220 = 0.12273 0.01970 ## ClashingRotamer 0 3 1 / 63 = 0.01587 0.00573 ## ClusteredRotamer 0 4 1 / 82 = 0.01220 0.00050 ## ReduceBreak 4 20 11 / 378 = 0.02910 0.04535 ## CloseGap 0 6 6 / 267 = 0.02247 0.02040 ## HealGap 0 9 2 / 199 = 0.01005 0.00017 ## MoveGap 0 32 13 / 333 = 0.03904 0.03721 ## ReduceConstraint 0 16 7 / 247 = 0.02834 0.01347 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 945 = 0.01799 0.03847 ## InsertFragment 0 14 8 / 294 = 0.02721 0.01765 ## TwoFragment 0 3 1 / 218 = 0.00459 0.00818 ## CrossOver 5 8 3 / 106 = 0.02830 0.00092 ## CrossAndInsert 2 1 0 / 188 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 236 = 0.02119 0.01330 # Closing gap before 104 next to short segment # generation 51: best score out of 20: T0287.try5 203.96872 cost/residue, 215 clashes 0.16436 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 36 20 / 103 = 0.19417 0.01096 ## JiggleSubtree 1 23 8 / 136 = 0.05882 0.01569 ## JiggleSegment 0 7 0 / 20 = 0.00000 0.00000 ## OptSubtree 2 5 2 / 110 = 0.01818 0.00924 ## OptSegment 0 0 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 69 41 / 128 = 0.32031 0.01081 ## TweakPsiSegment 0 59 34 / 108 = 0.31481 0.00811 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 17 95 54 / 172 = 0.31395 0.01908 ## TweakHbondSubtree 1 45 24 / 118 = 0.20339 0.00983 ## TweakHbondSegment 0 46 19 / 118 = 0.16102 0.00991 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 35 22 / 57 = 0.38596 0.00200 ## OneRotamer 0 59 28 / 232 = 0.12069 0.01873 ## ClashingRotamer 0 3 1 / 64 = 0.01562 0.00564 ## ClusteredRotamer 0 4 1 / 83 = 0.01205 0.00049 ## ReduceBreak 4 20 11 / 383 = 0.02872 0.04476 ## CloseGap 0 6 6 / 271 = 0.02214 0.02010 ## HealGap 0 9 2 / 205 = 0.00976 0.00017 ## MoveGap 0 32 13 / 335 = 0.03881 0.03698 ## ReduceConstraint 0 16 7 / 251 = 0.02789 0.01326 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 958 = 0.01775 0.03795 ## InsertFragment 0 14 8 / 295 = 0.02712 0.01759 ## TwoFragment 0 3 1 / 222 = 0.00450 0.00803 ## CrossOver 5 8 3 / 109 = 0.02752 0.00090 ## CrossAndInsert 2 1 0 / 189 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 237 = 0.02110 0.01325 # Closing gap before 104 next to short segment # generation 52: best score out of 20: T0287.try5 203.95782 cost/residue, 219 clashes 0.16440 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 37 21 / 113 = 0.18584 0.01007 ## JiggleSubtree 1 23 8 / 136 = 0.05882 0.01569 ## JiggleSegment 0 7 0 / 20 = 0.00000 0.00000 ## OptSubtree 2 5 2 / 112 = 0.01786 0.00907 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 71 44 / 131 = 0.33588 0.01093 ## TweakPsiSegment 0 60 35 / 114 = 0.30702 0.00770 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 18 99 58 / 182 = 0.31868 0.01871 ## TweakHbondSubtree 1 48 25 / 124 = 0.20161 0.00939 ## TweakHbondSegment 0 47 20 / 121 = 0.16529 0.01020 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 37 24 / 60 = 0.40000 0.00232 ## OneRotamer 0 59 28 / 238 = 0.11765 0.01826 ## ClashingRotamer 0 3 1 / 65 = 0.01538 0.00555 ## ClusteredRotamer 0 4 1 / 84 = 0.01190 0.00049 ## ReduceBreak 4 20 11 / 388 = 0.02835 0.04418 ## CloseGap 0 6 6 / 276 = 0.02174 0.01974 ## HealGap 0 9 2 / 207 = 0.00966 0.00017 ## MoveGap 0 32 13 / 338 = 0.03846 0.03666 ## ReduceConstraint 0 16 7 / 254 = 0.02756 0.01310 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 971 = 0.01751 0.03744 ## InsertFragment 0 14 8 / 299 = 0.02676 0.01735 ## TwoFragment 0 3 1 / 224 = 0.00446 0.00796 ## CrossOver 5 8 3 / 113 = 0.02655 0.00087 ## CrossAndInsert 2 1 0 / 191 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 238 = 0.02101 0.01319 # generation 53: best score out of 20: T0287.try5 203.89047 cost/residue, 210 clashes 0.16436 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 37 21 / 115 = 0.18261 0.00990 ## JiggleSubtree 1 23 8 / 140 = 0.05714 0.01524 ## JiggleSegment 0 7 0 / 20 = 0.00000 0.00000 ## OptSubtree 2 5 2 / 117 = 0.01709 0.00868 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 74 46 / 136 = 0.33824 0.01085 ## TweakPsiSegment 0 64 39 / 119 = 0.32773 0.00760 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 18 101 60 / 189 = 0.31746 0.01814 ## TweakHbondSubtree 1 48 26 / 129 = 0.20155 0.00932 ## TweakHbondSegment 0 47 20 / 124 = 0.16129 0.00995 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 38 25 / 64 = 0.39062 0.00227 ## OneRotamer 0 62 30 / 246 = 0.12195 0.01815 ## ClashingRotamer 0 3 1 / 67 = 0.01493 0.00539 ## ClusteredRotamer 0 4 1 / 85 = 0.01176 0.00048 ## ReduceBreak 4 20 11 / 390 = 0.02821 0.04396 ## CloseGap 0 6 6 / 276 = 0.02174 0.01974 ## HealGap 0 9 2 / 213 = 0.00939 0.00016 ## MoveGap 0 32 13 / 342 = 0.03801 0.03623 ## ReduceConstraint 0 16 7 / 259 = 0.02703 0.01285 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 987 = 0.01722 0.03684 ## InsertFragment 0 14 8 / 302 = 0.02649 0.01718 ## TwoFragment 0 3 1 / 229 = 0.00437 0.00778 ## CrossOver 5 8 3 / 113 = 0.02655 0.00087 ## CrossAndInsert 3 1 0 / 193 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 243 = 0.02058 0.01292 # generation 54: best score out of 20: T0287.try5 203.86353 cost/residue, 211 clashes 0.16464 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 23 / 121 = 0.19008 0.01022 ## JiggleSubtree 1 23 8 / 140 = 0.05714 0.01524 ## JiggleSegment 0 7 0 / 20 = 0.00000 0.00000 ## OptSubtree 2 5 2 / 122 = 0.01639 0.00833 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 36 = 0.19444 0.00185 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 76 48 / 144 = 0.33333 0.01046 ## TweakPsiSegment 0 65 39 / 123 = 0.31707 0.00735 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 19 108 64 / 207 = 0.30918 0.01693 ## TweakHbondSubtree 1 50 28 / 132 = 0.21212 0.00922 ## TweakHbondSegment 0 48 21 / 128 = 0.16406 0.00971 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 38 25 / 65 = 0.38462 0.00224 ## OneRotamer 0 63 31 / 257 = 0.12062 0.01745 ## ClashingRotamer 0 3 1 / 68 = 0.01471 0.00531 ## ClusteredRotamer 0 4 1 / 88 = 0.01136 0.00046 ## ReduceBreak 4 20 11 / 394 = 0.02792 0.04351 ## CloseGap 0 6 6 / 280 = 0.02143 0.01946 ## HealGap 0 9 2 / 216 = 0.00926 0.00016 ## MoveGap 0 32 13 / 343 = 0.03790 0.03612 ## ReduceConstraint 0 16 7 / 261 = 0.02682 0.01275 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 998 = 0.01703 0.03643 ## InsertFragment 0 14 8 / 305 = 0.02623 0.01701 ## TwoFragment 0 3 1 / 232 = 0.00431 0.00768 ## CrossOver 5 8 3 / 114 = 0.02632 0.00086 ## CrossAndInsert 3 1 0 / 194 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 245 = 0.02041 0.01282 # Closing gap before 107 next to short segment # generation 55: best score out of 20: T0287.try5 203.62100 cost/residue, 211 clashes 0.16464 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 25 / 131 = 0.19084 0.01132 ## JiggleSubtree 1 24 9 / 141 = 0.06383 0.01609 ## JiggleSegment 0 7 0 / 20 = 0.00000 0.00000 ## OptSubtree 2 5 2 / 125 = 0.01600 0.00813 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 37 = 0.18919 0.00180 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 81 50 / 150 = 0.33333 0.01015 ## TweakPsiSegment 0 67 39 / 127 = 0.30709 0.00712 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 19 110 66 / 214 = 0.30841 0.01711 ## TweakHbondSubtree 1 52 30 / 138 = 0.21739 0.00913 ## TweakHbondSegment 0 48 21 / 135 = 0.15556 0.00920 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 38 25 / 69 = 0.36232 0.00211 ## OneRotamer 0 64 32 / 264 = 0.12121 0.01743 ## ClashingRotamer 0 3 1 / 68 = 0.01471 0.00531 ## ClusteredRotamer 0 4 1 / 90 = 0.01111 0.00045 ## ReduceBreak 4 20 11 / 400 = 0.02750 0.04286 ## CloseGap 0 6 6 / 283 = 0.02120 0.01925 ## HealGap 0 9 2 / 220 = 0.00909 0.00016 ## MoveGap 0 32 13 / 346 = 0.03757 0.03581 ## ReduceConstraint 0 16 7 / 264 = 0.02652 0.01260 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 1007 = 0.01688 0.03611 ## InsertFragment 0 14 8 / 308 = 0.02597 0.01685 ## TwoFragment 0 3 1 / 236 = 0.00424 0.00755 ## CrossOver 5 8 3 / 116 = 0.02586 0.00084 ## CrossAndInsert 3 1 0 / 196 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 246 = 0.02033 0.01276 # Closing gap before 104 next to short segment # Closing gap before 104 next to short segment # generation 56: best score out of 20: T0287.try5 203.55325 cost/residue, 211 clashes 0.16502 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 25 / 135 = 0.18519 0.01098 ## JiggleSubtree 1 24 9 / 144 = 0.06250 0.01576 ## JiggleSegment 0 7 0 / 21 = 0.00000 0.00000 ## OptSubtree 2 5 2 / 128 = 0.01562 0.00794 ## OptSegment 0 0 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 37 = 0.18919 0.00180 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 84 53 / 158 = 0.33544 0.01010 ## TweakPsiSegment 0 67 40 / 129 = 0.31008 0.00718 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 20 115 71 / 222 = 0.31982 0.01709 ## TweakHbondSubtree 1 55 33 / 143 = 0.23077 0.01029 ## TweakHbondSegment 0 50 23 / 140 = 0.16429 0.00902 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 40 27 / 74 = 0.36486 0.00201 ## OneRotamer 0 65 33 / 273 = 0.12088 0.01686 ## ClashingRotamer 0 3 1 / 68 = 0.01471 0.00531 ## ClusteredRotamer 0 4 1 / 94 = 0.01064 0.00043 ## ReduceBreak 4 20 11 / 405 = 0.02716 0.04233 ## CloseGap 0 6 6 / 286 = 0.02098 0.01905 ## HealGap 0 9 2 / 222 = 0.00901 0.00016 ## MoveGap 0 32 13 / 353 = 0.03683 0.03510 ## ReduceConstraint 0 16 7 / 266 = 0.02632 0.01251 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 1018 = 0.01670 0.03572 ## InsertFragment 0 14 8 / 309 = 0.02589 0.01679 ## TwoFragment 0 3 1 / 240 = 0.00417 0.00743 ## CrossOver 5 8 3 / 117 = 0.02564 0.00084 ## CrossAndInsert 3 1 0 / 200 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 248 = 0.02016 0.01266 # generation 57: best score out of 20: T0287.try5 203.11061 cost/residue, 204 clashes 0.16502 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 26 / 141 = 0.18440 0.01073 ## JiggleSubtree 1 24 9 / 151 = 0.05960 0.01503 ## JiggleSegment 0 7 0 / 21 = 0.00000 0.00000 ## OptSubtree 3 5 2 / 135 = 0.01481 0.00753 ## OptSegment 0 0 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 37 = 0.18919 0.00180 ## TweakPhiSegment 1 8 0 / 13 = 0.00000 0.00000 ## TweakPsiSubtree 0 85 54 / 164 = 0.32927 0.00977 ## TweakPsiSegment 0 68 40 / 132 = 0.30303 0.00701 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 23 117 73 / 225 = 0.32444 0.01732 ## TweakHbondSubtree 1 56 34 / 147 = 0.23129 0.01034 ## TweakHbondSegment 0 54 25 / 147 = 0.17007 0.00922 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 40 27 / 74 = 0.36486 0.00201 ## OneRotamer 0 68 34 / 281 = 0.12100 0.01795 ## ClashingRotamer 0 3 1 / 69 = 0.01449 0.00523 ## ClusteredRotamer 0 4 1 / 95 = 0.01053 0.00043 ## ReduceBreak 4 20 11 / 409 = 0.02689 0.04191 ## CloseGap 0 6 6 / 291 = 0.02062 0.01872 ## HealGap 0 9 2 / 223 = 0.00897 0.00016 ## MoveGap 0 32 13 / 358 = 0.03631 0.03461 ## ReduceConstraint 0 16 7 / 270 = 0.02593 0.01232 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 1032 = 0.01647 0.03523 ## InsertFragment 0 14 8 / 312 = 0.02564 0.01663 ## TwoFragment 0 3 1 / 243 = 0.00412 0.00734 ## CrossOver 5 8 3 / 118 = 0.02542 0.00083 ## CrossAndInsert 3 1 0 / 202 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 251 = 0.01992 0.01251 # generation 58: best score out of 20: T0287.try5 203.08504 cost/residue, 204 clashes 0.16506 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 43 28 / 150 = 0.18667 0.01061 ## JiggleSubtree 1 24 9 / 152 = 0.05921 0.01493 ## JiggleSegment 0 7 0 / 22 = 0.00000 0.00000 ## OptSubtree 3 5 2 / 136 = 0.01471 0.00747 ## OptSegment 0 0 0 / 51 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 37 = 0.18919 0.00180 ## TweakPhiSegment 1 9 0 / 14 = 0.00000 0.00000 ## TweakPsiSubtree 0 87 56 / 168 = 0.33333 0.00956 ## TweakPsiSegment 0 69 41 / 135 = 0.30370 0.00689 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 27 121 77 / 233 = 0.33047 0.01702 ## TweakHbondSubtree 1 56 35 / 156 = 0.22436 0.00975 ## TweakHbondSegment 0 56 27 / 155 = 0.17419 0.00888 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 41 28 / 76 = 0.36842 0.00266 ## OneRotamer 0 71 34 / 293 = 0.11604 0.01722 ## ClashingRotamer 0 3 1 / 69 = 0.01449 0.00523 ## ClusteredRotamer 0 4 1 / 96 = 0.01042 0.00042 ## ReduceBreak 4 20 11 / 413 = 0.02663 0.04151 ## CloseGap 0 6 6 / 293 = 0.02048 0.01859 ## HealGap 0 9 2 / 226 = 0.00885 0.00015 ## MoveGap 0 32 13 / 362 = 0.03591 0.03423 ## ReduceConstraint 0 16 7 / 272 = 0.02574 0.01223 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 1040 = 0.01635 0.03496 ## InsertFragment 0 14 8 / 317 = 0.02524 0.01637 ## TwoFragment 0 3 1 / 246 = 0.00407 0.00725 ## CrossOver 5 8 3 / 119 = 0.02521 0.00082 ## CrossAndInsert 3 1 0 / 205 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 255 = 0.01961 0.01231 # Closing gap before 107 next to short segment # generation 59: best score out of 20: T0287.try5 203.02434 cost/residue, 204 clashes 0.16494 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 30 / 158 = 0.18987 0.01029 ## JiggleSubtree 1 25 10 / 156 = 0.06410 0.01461 ## JiggleSegment 0 7 0 / 22 = 0.00000 0.00000 ## OptSubtree 3 5 2 / 138 = 0.01449 0.00736 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 37 = 0.18919 0.00180 ## TweakPhiSegment 1 9 0 / 14 = 0.00000 0.00000 ## TweakPsiSubtree 0 89 59 / 172 = 0.34302 0.00939 ## TweakPsiSegment 0 72 43 / 140 = 0.30714 0.00667 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 27 125 80 / 245 = 0.32653 0.01652 ## TweakHbondSubtree 1 56 36 / 163 = 0.22086 0.00954 ## TweakHbondSegment 0 58 28 / 159 = 0.17610 0.00889 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 43 31 / 81 = 0.38272 0.00253 ## OneRotamer 0 71 34 / 305 = 0.11148 0.01654 ## ClashingRotamer 0 3 1 / 70 = 0.01429 0.00516 ## ClusteredRotamer 1 4 1 / 98 = 0.01020 0.00042 ## ReduceBreak 4 20 11 / 415 = 0.02651 0.04131 ## CloseGap 0 6 6 / 298 = 0.02013 0.01828 ## HealGap 0 9 2 / 227 = 0.00881 0.00015 ## MoveGap 0 32 13 / 364 = 0.03571 0.03404 ## ReduceConstraint 0 16 7 / 277 = 0.02527 0.01201 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 1048 = 0.01622 0.03469 ## InsertFragment 0 14 8 / 318 = 0.02516 0.01632 ## TwoFragment 0 3 1 / 251 = 0.00398 0.00710 ## CrossOver 5 8 3 / 120 = 0.02500 0.00082 ## CrossAndInsert 3 1 0 / 206 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 257 = 0.01946 0.01222 # Closing gap before 11 without wiggling. # generation 60: best score out of 20: T0287.try5 202.98465 cost/residue, 202 clashes 0.16469 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 30 / 163 = 0.18405 0.00997 ## JiggleSubtree 1 25 10 / 167 = 0.05988 0.01365 ## JiggleSegment 0 7 0 / 22 = 0.00000 0.00000 ## OptSubtree 3 5 2 / 145 = 0.01379 0.00701 ## OptSegment 0 0 0 / 52 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 25 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 23 7 / 37 = 0.18919 0.00180 ## TweakPhiSegment 1 9 0 / 14 = 0.00000 0.00000 ## TweakPsiSubtree 1 90 60 / 176 = 0.34091 0.00917 ## TweakPsiSegment 0 75 46 / 149 = 0.30872 0.00659 ## TweakPsiPhiSubtree 0 8 0 / 12 = 0.00000 0.00000 ## TweakPsiPhiSegment 29 130 84 / 255 = 0.32941 0.01658 ## TweakHbondSubtree 1 57 36 / 166 = 0.21687 0.00937 ## TweakHbondSegment 0 58 28 / 162 = 0.17284 0.00872 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 46 33 / 89 = 0.37079 0.00232 ## OneRotamer 0 72 35 / 312 = 0.11218 0.01621 ## ClashingRotamer 0 3 1 / 71 = 0.01408 0.00509 ## ClusteredRotamer 1 4 1 / 100 = 0.01000 0.00041 ## ReduceBreak 4 20 11 / 416 = 0.02644 0.04121 ## CloseGap 0 6 6 / 300 = 0.02000 0.01816 ## HealGap 0 9 2 / 228 = 0.00877 0.00015 ## MoveGap 0 32 13 / 367 = 0.03542 0.03376 ## ReduceConstraint 0 16 7 / 279 = 0.02509 0.01193 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 1056 = 0.01610 0.03443 ## InsertFragment 0 14 8 / 324 = 0.02469 0.01601 ## TwoFragment 0 3 1 / 252 = 0.00397 0.00707 ## CrossOver 5 8 3 / 122 = 0.02459 0.00080 ## CrossAndInsert 3 1 0 / 206 = 0.00000 0.00000 ## ReduceClash 0 7 5 / 259 = 0.01931 0.01212 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1236579674.pdb -s /var/tmp/to_scwrl_1236579674.seq -o /var/tmp/from_scwrl_1236579674.pdb > /var/tmp/scwrl_1236579674.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1236579674.pdb # T0287.try5-scwrl 204.63058 cost/residue 212 clashes 0.16470 breaks # iteration 2 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try5 at pool[13] 228.04773 cost/residue, 261 clashes 0.28736 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0287.try5 227.65462 cost/residue, 258 clashes 0.25935 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 1 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 7 = 0.14286 0.05616 ## CloseGap 0 1 2 / 9 = 0.22222 0.10174 ## HealGap 0 4 0 / 5 = 0.00000 0.00000 ## MoveGap 0 5 3 / 9 = 0.33333 0.80559 ## ReduceConstraint 0 0 0 / 8 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 18 = 0.00000 0.00000 ## InsertFragment 0 1 1 / 10 = 0.10000 0.14746 ## TwoFragment 0 0 1 / 4 = 0.25000 0.24855 ## CrossOver 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 3 = 0.33333 5.44400 ## ReduceClash 0 1 0 / 4 = 0.00000 0.00000 # generation 2: best score out of 20: T0287.try5 221.29587 cost/residue, 266 clashes 0.22118 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 1 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ReduceBreak 0 6 5 / 18 = 0.27778 0.51299 ## CloseGap 0 1 2 / 13 = 0.15385 0.07044 ## HealGap 0 6 0 / 11 = 0.00000 0.00000 ## MoveGap 0 5 5 / 15 = 0.33333 0.50224 ## ReduceConstraint 0 1 1 / 15 = 0.06667 0.17144 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 2 / 40 = 0.05000 0.17769 ## InsertFragment 0 2 2 / 14 = 0.14286 0.59125 ## TwoFragment 0 0 1 / 9 = 0.11111 0.11047 ## CrossOver 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 13 = 0.07692 1.25631 ## ReduceClash 0 1 0 / 9 = 0.00000 0.00000 # generation 3: best score out of 20: T0287.try5 221.29587 cost/residue, 266 clashes 0.22118 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 4 = 0.00000 0.00000 ## ClashingRotamer 1 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ReduceBreak 0 7 5 / 25 = 0.20000 0.36935 ## CloseGap 0 6 2 / 23 = 0.08696 0.03981 ## HealGap 0 6 0 / 18 = 0.00000 0.00000 ## MoveGap 0 6 6 / 22 = 0.27273 0.34297 ## ReduceConstraint 0 2 1 / 19 = 0.05263 0.13535 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 2 / 63 = 0.03175 0.11282 ## InsertFragment 0 3 3 / 19 = 0.15789 0.56641 ## TwoFragment 0 2 1 / 20 = 0.05000 0.04971 ## CrossOver 0 1 0 / 11 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 21 = 0.04762 0.77771 ## ReduceClash 0 1 0 / 13 = 0.00000 0.00000 # generation 4: best score out of 20: T0287.try5 221.00916 cost/residue, 261 clashes 0.25418 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 1 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ReduceBreak 0 7 5 / 27 = 0.18519 0.34199 ## CloseGap 0 6 2 / 27 = 0.07407 0.03391 ## HealGap 0 6 0 / 24 = 0.00000 0.00000 ## MoveGap 0 12 10 / 32 = 0.31250 0.26586 ## ReduceConstraint 0 3 1 / 26 = 0.03846 0.09891 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 2 / 87 = 0.02299 0.08170 ## InsertFragment 0 3 3 / 26 = 0.11538 0.41392 ## TwoFragment 0 2 1 / 24 = 0.04167 0.04143 ## CrossOver 0 1 0 / 15 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 32 = 0.03125 0.51038 ## ReduceClash 0 3 0 / 22 = 0.00000 0.00000 # generation 5: best score out of 20: T0287.try5 220.24237 cost/residue, 263 clashes 0.21519 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 1 0 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 7 5 / 34 = 0.14706 0.27158 ## CloseGap 0 7 2 / 32 = 0.06250 0.02861 ## HealGap 0 6 0 / 27 = 0.00000 0.00000 ## MoveGap 0 15 11 / 38 = 0.28947 0.22416 ## ReduceConstraint 0 3 1 / 33 = 0.03030 0.07793 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 4 / 113 = 0.03540 0.08449 ## InsertFragment 0 5 4 / 33 = 0.12121 0.33140 ## TwoFragment 0 2 1 / 29 = 0.03448 0.03428 ## CrossOver 0 1 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 0 0 1 / 39 = 0.02564 0.41877 ## ReduceClash 0 3 0 / 23 = 0.00000 0.00000 # generation 6: best score out of 20: T0287.try5 219.52792 cost/residue, 241 clashes 0.31142 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 1 / 1 = 1.00000 0.05013 ## TweakPsiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 1 0 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 14 = 0.00000 0.00000 ## ReduceBreak 0 7 5 / 40 = 0.12500 0.23085 ## CloseGap 0 7 2 / 35 = 0.05714 0.02616 ## HealGap 0 6 0 / 33 = 0.00000 0.00000 ## MoveGap 0 21 14 / 50 = 0.28000 0.19866 ## ReduceConstraint 0 3 1 / 39 = 0.02564 0.06594 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 5 / 128 = 0.03906 0.07999 ## InsertFragment 0 7 5 / 49 = 0.10204 0.22331 ## TwoFragment 0 4 3 / 36 = 0.08333 0.13035 ## CrossOver 0 1 0 / 20 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 46 = 0.02174 0.35504 ## ReduceClash 0 3 0 / 27 = 0.00000 0.00000 # generation 7: best score out of 20: T0287.try5 219.25404 cost/residue, 272 clashes 0.25458 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 1 / 1 = 1.00000 0.05013 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 1 0 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 15 = 0.00000 0.00000 ## ReduceBreak 1 7 5 / 46 = 0.10870 0.20074 ## CloseGap 0 8 2 / 42 = 0.04762 0.02180 ## HealGap 0 6 0 / 38 = 0.00000 0.00000 ## MoveGap 0 24 14 / 57 = 0.24561 0.17426 ## ReduceConstraint 0 4 1 / 42 = 0.02381 0.06123 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 6 / 155 = 0.03871 0.07424 ## InsertFragment 0 9 6 / 63 = 0.09524 0.20155 ## TwoFragment 0 4 3 / 42 = 0.07143 0.11173 ## CrossOver 0 2 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 0 1 / 52 = 0.01923 0.31408 ## ReduceClash 0 3 0 / 33 = 0.00000 0.00000 # generation 8: best score out of 20: T0287.try5 218.15245 cost/residue, 279 clashes 0.26566 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 1 / 1 = 1.00000 0.05013 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 5 1 / 10 = 0.10000 0.03545 ## ClashingRotamer 1 0 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 18 = 0.00000 0.00000 ## ReduceBreak 1 8 5 / 56 = 0.08929 0.16489 ## CloseGap 0 8 2 / 47 = 0.04255 0.01948 ## HealGap 0 7 0 / 45 = 0.00000 0.00000 ## MoveGap 0 25 14 / 64 = 0.21875 0.15520 ## ReduceConstraint 0 6 2 / 48 = 0.04167 0.06714 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 7 / 174 = 0.04023 0.07247 ## InsertFragment 0 11 7 / 79 = 0.08861 0.16440 ## TwoFragment 0 4 3 / 47 = 0.06383 0.09985 ## CrossOver 1 3 1 / 28 = 0.03571 0.00000 ## CrossAndInsert 1 0 1 / 59 = 0.01695 0.27681 ## ReduceClash 0 3 0 / 35 = 0.00000 0.00000 # generation 9: best score out of 20: T0287.try5 218.15245 cost/residue, 279 clashes 0.26566 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 2 / 3 = 0.66667 0.01870 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 4 1 / 8 = 0.12500 0.00149 ## TweakPsiPhiSegment 0 1 1 / 2 = 0.50000 0.04765 ## TweakHbondSubtree 0 4 1 / 5 = 0.20000 0.04309 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 5 1 / 13 = 0.07692 0.02727 ## ClashingRotamer 1 0 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 20 = 0.00000 0.00000 ## ReduceBreak 1 8 5 / 65 = 0.07692 0.14206 ## CloseGap 0 8 2 / 51 = 0.03922 0.01795 ## HealGap 0 7 0 / 55 = 0.00000 0.00000 ## MoveGap 0 28 15 / 72 = 0.20833 0.15918 ## ReduceConstraint 0 6 2 / 52 = 0.03846 0.06197 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 7 / 192 = 0.03646 0.06567 ## InsertFragment 0 12 8 / 83 = 0.09639 0.16191 ## TwoFragment 0 4 3 / 55 = 0.05455 0.08532 ## CrossOver 1 3 1 / 31 = 0.03226 0.00000 ## CrossAndInsert 2 0 1 / 68 = 0.01471 0.24018 ## ReduceClash 0 4 0 / 39 = 0.00000 0.00000 # generation 10: best score out of 20: T0287.try5 217.38969 cost/residue, 251 clashes 0.29675 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 2 / 3 = 0.66667 0.01870 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 4 1 / 8 = 0.12500 0.00149 ## TweakPsiPhiSegment 0 2 2 / 3 = 0.66667 0.03183 ## TweakHbondSubtree 0 4 1 / 5 = 0.20000 0.04309 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 8 1 / 17 = 0.05882 0.02085 ## ClashingRotamer 1 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 22 = 0.00000 0.00000 ## ReduceBreak 1 8 5 / 76 = 0.06579 0.12150 ## CloseGap 0 8 2 / 55 = 0.03636 0.01665 ## HealGap 0 8 0 / 62 = 0.00000 0.00000 ## MoveGap 0 33 18 / 81 = 0.22222 0.17070 ## ReduceConstraint 0 6 2 / 57 = 0.03509 0.05654 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 7 / 203 = 0.03448 0.06211 ## InsertFragment 0 12 8 / 91 = 0.08791 0.14767 ## TwoFragment 0 4 3 / 64 = 0.04688 0.07332 ## CrossOver 1 5 1 / 36 = 0.02778 0.00000 ## CrossAndInsert 2 0 1 / 79 = 0.01266 0.20673 ## ReduceClash 0 4 0 / 46 = 0.00000 0.00000 # generation 11: best score out of 20: T0287.try5 216.00467 cost/residue, 249 clashes 0.29675 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 1 / 4 = 0.25000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 3 / 5 = 0.60000 0.01217 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 5 2 / 10 = 0.20000 0.00184 ## TweakPsiPhiSegment 0 7 4 / 8 = 0.50000 0.02157 ## TweakHbondSubtree 0 4 1 / 5 = 0.20000 0.04309 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 9 1 / 18 = 0.05556 0.01969 ## ClashingRotamer 1 0 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 24 = 0.00000 0.00000 ## ReduceBreak 1 8 5 / 82 = 0.06098 0.11261 ## CloseGap 0 8 2 / 61 = 0.03279 0.01501 ## HealGap 0 8 0 / 63 = 0.00000 0.00000 ## MoveGap 0 34 18 / 90 = 0.20000 0.15363 ## ReduceConstraint 0 6 2 / 61 = 0.03279 0.05283 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 7 / 224 = 0.03125 0.05629 ## InsertFragment 0 13 9 / 97 = 0.09278 0.15282 ## TwoFragment 0 4 3 / 73 = 0.04110 0.06428 ## CrossOver 1 5 1 / 39 = 0.02564 0.00000 ## CrossAndInsert 2 0 1 / 90 = 0.01111 0.18147 ## ReduceClash 0 5 1 / 51 = 0.01961 0.00911 # generation 12: best score out of 20: T0287.try5 216.00467 cost/residue, 249 clashes 0.29675 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 5 = 0.20000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 4 / 8 = 0.50000 0.00763 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 5 2 / 10 = 0.20000 0.00184 ## TweakPsiPhiSegment 0 7 4 / 8 = 0.50000 0.02157 ## TweakHbondSubtree 0 7 2 / 9 = 0.22222 0.03299 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 11 1 / 20 = 0.05000 0.01772 ## ClashingRotamer 1 0 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 24 = 0.00000 0.00000 ## ReduceBreak 1 8 5 / 87 = 0.05747 0.10614 ## CloseGap 0 8 2 / 68 = 0.02941 0.01347 ## HealGap 0 8 0 / 65 = 0.00000 0.00000 ## MoveGap 0 36 20 / 99 = 0.20202 0.14401 ## ReduceConstraint 0 6 2 / 67 = 0.02985 0.04810 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 7 / 248 = 0.02823 0.05084 ## InsertFragment 0 13 9 / 106 = 0.08491 0.13984 ## TwoFragment 0 4 3 / 80 = 0.03750 0.05866 ## CrossOver 1 5 1 / 39 = 0.02564 0.00000 ## CrossAndInsert 2 0 1 / 95 = 0.01053 0.17192 ## ReduceClash 0 5 1 / 54 = 0.01852 0.00860 # generation 13: best score out of 20: T0287.try5 215.96916 cost/residue, 242 clashes 0.28668 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 5 = 0.20000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 5 / 10 = 0.50000 0.00611 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 6 2 / 11 = 0.18182 0.00168 ## TweakPsiPhiSegment 0 8 5 / 9 = 0.55556 0.04991 ## TweakHbondSubtree 0 8 2 / 10 = 0.20000 0.02969 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 11 1 / 21 = 0.04762 0.01688 ## ClashingRotamer 1 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 26 = 0.00000 0.00000 ## ReduceBreak 1 9 5 / 92 = 0.05435 0.10037 ## CloseGap 0 8 2 / 75 = 0.02667 0.01221 ## HealGap 0 8 0 / 68 = 0.00000 0.00000 ## MoveGap 0 38 20 / 107 = 0.18692 0.13324 ## ReduceConstraint 0 7 3 / 76 = 0.03947 0.04287 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 8 / 275 = 0.02909 0.04829 ## InsertFragment 0 14 9 / 113 = 0.07965 0.13118 ## TwoFragment 0 4 3 / 86 = 0.03488 0.05457 ## CrossOver 1 5 1 / 40 = 0.02500 0.00000 ## CrossAndInsert 2 1 1 / 104 = 0.00962 0.15704 ## ReduceClash 0 5 1 / 60 = 0.01667 0.00774 # generation 14: best score out of 20: T0287.try5 215.67232 cost/residue, 236 clashes 0.27394 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 5 = 0.20000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 5 / 11 = 0.45455 0.00555 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 8 3 / 13 = 0.23077 0.00277 ## TweakPsiPhiSegment 0 9 7 / 12 = 0.58333 0.04766 ## TweakHbondSubtree 0 8 2 / 10 = 0.20000 0.02969 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 13 3 / 24 = 0.12500 0.02053 ## ClashingRotamer 1 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 27 = 0.00000 0.00000 ## ReduceBreak 1 10 6 / 97 = 0.06186 0.10182 ## CloseGap 0 8 2 / 80 = 0.02500 0.01145 ## HealGap 0 8 0 / 76 = 0.00000 0.00000 ## MoveGap 0 40 22 / 115 = 0.19130 0.12828 ## ReduceConstraint 0 7 3 / 79 = 0.03797 0.04124 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 8 / 292 = 0.02740 0.04548 ## InsertFragment 0 16 9 / 129 = 0.06977 0.11491 ## TwoFragment 0 4 3 / 92 = 0.03261 0.05101 ## CrossOver 1 5 1 / 43 = 0.02326 0.00000 ## CrossAndInsert 2 1 1 / 113 = 0.00885 0.14453 ## ReduceClash 0 5 1 / 62 = 0.01613 0.00749 # generation 15: best score out of 20: T0287.try5 215.67232 cost/residue, 236 clashes 0.27394 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00000 ## TweakPhiSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 6 / 12 = 0.50000 0.00516 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 2 8 3 / 13 = 0.23077 0.00277 ## TweakPsiPhiSegment 1 12 7 / 15 = 0.46667 0.03813 ## TweakHbondSubtree 0 8 2 / 10 = 0.20000 0.02969 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 15 3 / 26 = 0.11538 0.01895 ## ClashingRotamer 1 0 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 29 = 0.00000 0.00000 ## ReduceBreak 2 10 6 / 100 = 0.06000 0.09876 ## CloseGap 0 8 2 / 86 = 0.02326 0.01065 ## HealGap 0 8 0 / 84 = 0.00000 0.00000 ## MoveGap 0 40 22 / 119 = 0.18487 0.12397 ## ReduceConstraint 0 7 3 / 85 = 0.03529 0.03833 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 16 9 / 316 = 0.02848 0.04206 ## InsertFragment 0 16 9 / 138 = 0.06522 0.10741 ## TwoFragment 0 4 3 / 99 = 0.03030 0.04740 ## CrossOver 1 5 1 / 45 = 0.02222 0.00000 ## CrossAndInsert 2 1 1 / 121 = 0.00826 0.13498 ## ReduceClash 0 5 1 / 69 = 0.01449 0.00673 # generation 16: best score out of 20: T0287.try5 215.11156 cost/residue, 228 clashes 0.30113 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 6 / 12 = 0.50000 0.00516 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 2 9 3 / 14 = 0.21429 0.00258 ## TweakPsiPhiSegment 1 13 7 / 16 = 0.43750 0.03575 ## TweakHbondSubtree 0 11 3 / 13 = 0.23077 0.02835 ## TweakHbondSegment 0 1 0 / 4 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 15 3 / 26 = 0.11538 0.01895 ## ClashingRotamer 1 0 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ReduceBreak 2 10 6 / 105 = 0.05714 0.09406 ## CloseGap 0 8 2 / 89 = 0.02247 0.01029 ## HealGap 0 8 0 / 91 = 0.00000 0.00000 ## MoveGap 0 40 22 / 129 = 0.17054 0.11436 ## ReduceConstraint 0 7 3 / 87 = 0.03448 0.03745 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 16 9 / 341 = 0.02639 0.03897 ## InsertFragment 0 18 10 / 148 = 0.06757 0.10461 ## TwoFragment 0 4 3 / 105 = 0.02857 0.04469 ## CrossOver 1 7 1 / 50 = 0.02000 0.00000 ## CrossAndInsert 2 1 1 / 126 = 0.00794 0.12962 ## ReduceClash 0 7 1 / 75 = 0.01333 0.00619 # generation 17: best score out of 20: T0287.try5 214.57368 cost/residue, 226 clashes 0.30368 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 7 = 0.14286 0.00000 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 12 6 / 14 = 0.42857 0.00442 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 2 11 3 / 16 = 0.18750 0.00225 ## TweakPsiPhiSegment 2 15 8 / 18 = 0.44444 0.03289 ## TweakHbondSubtree 0 12 4 / 14 = 0.28571 0.06475 ## TweakHbondSegment 0 1 0 / 5 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 16 4 / 28 = 0.14286 0.02081 ## ClashingRotamer 1 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ReduceBreak 2 10 6 / 114 = 0.05263 0.08663 ## CloseGap 0 8 2 / 93 = 0.02151 0.00985 ## HealGap 0 8 0 / 93 = 0.00000 0.00000 ## MoveGap 0 40 22 / 141 = 0.15603 0.10463 ## ReduceConstraint 0 8 3 / 93 = 0.03226 0.03503 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 16 9 / 361 = 0.02493 0.03681 ## InsertFragment 0 19 11 / 157 = 0.07006 0.10037 ## TwoFragment 0 4 3 / 110 = 0.02727 0.04266 ## CrossOver 1 9 2 / 54 = 0.03704 0.00028 ## CrossAndInsert 2 1 1 / 134 = 0.00746 0.12188 ## ReduceClash 0 7 1 / 81 = 0.01235 0.00573 # generation 18: best score out of 20: T0287.try5 212.81845 cost/residue, 248 clashes 0.23386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 2 / 9 = 0.22222 0.00000 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 12 6 / 14 = 0.42857 0.00442 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 3 12 4 / 17 = 0.23529 0.01360 ## TweakPsiPhiSegment 2 17 9 / 20 = 0.45000 0.02966 ## TweakHbondSubtree 0 16 5 / 20 = 0.25000 0.05003 ## TweakHbondSegment 0 2 1 / 6 = 0.16667 0.00411 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 17 5 / 29 = 0.17241 0.02044 ## ClashingRotamer 1 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 32 = 0.00000 0.00000 ## ReduceBreak 2 12 7 / 119 = 0.05882 0.10756 ## CloseGap 0 8 2 / 99 = 0.02020 0.00925 ## HealGap 0 8 0 / 97 = 0.00000 0.00000 ## MoveGap 0 40 22 / 147 = 0.14966 0.10035 ## ReduceConstraint 0 8 3 / 97 = 0.03093 0.03359 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 9 / 381 = 0.02362 0.03488 ## InsertFragment 0 20 12 / 168 = 0.07143 0.09507 ## TwoFragment 0 4 3 / 115 = 0.02609 0.04081 ## CrossOver 1 9 2 / 58 = 0.03448 0.00026 ## CrossAndInsert 2 1 1 / 139 = 0.00719 0.11750 ## ReduceClash 0 7 1 / 87 = 0.01149 0.00534 # generation 19: best score out of 20: T0287.try5 212.10963 cost/residue, 238 clashes 0.23428 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 2 / 9 = 0.22222 0.00000 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 13 7 / 15 = 0.46667 0.00430 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 3 13 4 / 18 = 0.22222 0.01285 ## TweakPsiPhiSegment 2 17 9 / 22 = 0.40909 0.02696 ## TweakHbondSubtree 0 19 7 / 25 = 0.28000 0.06867 ## TweakHbondSegment 0 4 2 / 8 = 0.25000 0.00908 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 19 6 / 33 = 0.18182 0.02185 ## ClashingRotamer 1 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 35 = 0.00000 0.00000 ## ReduceBreak 2 12 7 / 128 = 0.05469 0.10000 ## CloseGap 0 8 2 / 104 = 0.01923 0.00880 ## HealGap 0 8 0 / 103 = 0.00000 0.00000 ## MoveGap 0 40 22 / 160 = 0.13750 0.09220 ## ReduceConstraint 0 8 3 / 99 = 0.03030 0.03291 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 9 / 393 = 0.02290 0.03382 ## InsertFragment 0 22 13 / 175 = 0.07429 0.10411 ## TwoFragment 0 4 3 / 120 = 0.02500 0.03911 ## CrossOver 1 10 2 / 62 = 0.03226 0.00025 ## CrossAndInsert 2 1 1 / 146 = 0.00685 0.11186 ## ReduceClash 0 7 1 / 97 = 0.01031 0.00479 # generation 20: best score out of 20: T0287.try5 212.01631 cost/residue, 238 clashes 0.23506 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 2 / 9 = 0.22222 0.00000 ## TweakPhiSegment 0 4 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 13 7 / 15 = 0.46667 0.00430 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 3 14 4 / 20 = 0.20000 0.01156 ## TweakPsiPhiSegment 3 18 9 / 23 = 0.39130 0.02579 ## TweakHbondSubtree 1 23 9 / 32 = 0.28125 0.06349 ## TweakHbondSegment 0 6 2 / 10 = 0.20000 0.00726 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 20 7 / 35 = 0.20000 0.02135 ## ClashingRotamer 1 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 37 = 0.00000 0.00000 ## ReduceBreak 2 12 7 / 133 = 0.05263 0.09624 ## CloseGap 0 8 2 / 111 = 0.01802 0.00825 ## HealGap 0 8 0 / 107 = 0.00000 0.00000 ## MoveGap 0 40 22 / 169 = 0.13018 0.08729 ## ReduceConstraint 0 10 4 / 109 = 0.03670 0.03047 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 9 / 408 = 0.02206 0.03257 ## InsertFragment 0 22 13 / 183 = 0.07104 0.09956 ## TwoFragment 0 4 3 / 128 = 0.02344 0.03666 ## CrossOver 1 10 2 / 63 = 0.03175 0.00024 ## CrossAndInsert 2 1 1 / 154 = 0.00649 0.10605 ## ReduceClash 0 7 1 / 104 = 0.00962 0.00447 # generation 21: best score out of 20: T0287.try5 211.75262 cost/residue, 255 clashes 0.26165 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 3 / 10 = 0.30000 0.02373 ## TweakPhiSegment 0 4 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 14 8 / 17 = 0.47059 0.00947 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00215 ## TweakPsiPhiSubtree 3 14 4 / 20 = 0.20000 0.01156 ## TweakPsiPhiSegment 3 20 10 / 25 = 0.40000 0.02648 ## TweakHbondSubtree 1 26 10 / 37 = 0.27027 0.05597 ## TweakHbondSegment 0 6 2 / 12 = 0.16667 0.00605 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 21 7 / 37 = 0.18919 0.02020 ## ClashingRotamer 1 0 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 39 = 0.00000 0.00000 ## ReduceBreak 2 12 7 / 140 = 0.05000 0.09143 ## CloseGap 0 8 2 / 118 = 0.01695 0.00776 ## HealGap 0 8 0 / 111 = 0.00000 0.00000 ## MoveGap 0 40 22 / 178 = 0.12360 0.08288 ## ReduceConstraint 0 10 4 / 112 = 0.03571 0.02966 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 18 10 / 426 = 0.02347 0.03252 ## InsertFragment 0 24 14 / 192 = 0.07292 0.10015 ## TwoFragment 0 4 3 / 134 = 0.02239 0.03502 ## CrossOver 1 10 2 / 67 = 0.02985 0.00023 ## CrossAndInsert 2 1 1 / 158 = 0.00633 0.10337 ## ReduceClash 0 7 1 / 109 = 0.00917 0.00426 # generation 22: best score out of 20: T0287.try5 211.75262 cost/residue, 255 clashes 0.26165 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 12 4 / 14 = 0.28571 0.02464 ## TweakPhiSegment 0 4 0 / 7 = 0.00000 0.00000 ## TweakPsiSubtree 0 14 8 / 17 = 0.47059 0.00947 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00215 ## TweakPsiPhiSubtree 3 14 4 / 21 = 0.19048 0.01101 ## TweakPsiPhiSegment 3 23 11 / 29 = 0.37931 0.02324 ## TweakHbondSubtree 1 27 10 / 39 = 0.25641 0.05310 ## TweakHbondSegment 0 6 2 / 12 = 0.16667 0.00605 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 21 7 / 39 = 0.17949 0.01916 ## ClashingRotamer 1 1 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 41 = 0.00000 0.00000 ## ReduceBreak 2 12 7 / 149 = 0.04698 0.08591 ## CloseGap 0 8 2 / 121 = 0.01653 0.00757 ## HealGap 0 8 0 / 114 = 0.00000 0.00000 ## MoveGap 0 40 22 / 186 = 0.11828 0.07931 ## ReduceConstraint 0 10 4 / 116 = 0.03448 0.02863 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 11 / 447 = 0.02461 0.03148 ## InsertFragment 0 25 14 / 204 = 0.06863 0.09426 ## TwoFragment 0 4 3 / 137 = 0.02190 0.03425 ## CrossOver 2 10 2 / 70 = 0.02857 0.00022 ## CrossAndInsert 2 1 1 / 169 = 0.00592 0.09664 ## ReduceClash 0 7 1 / 113 = 0.00885 0.00411 # generation 23: best score out of 20: T0287.try5 210.78836 cost/residue, 242 clashes 0.26306 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 9 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 18 7 / 21 = 0.33333 0.01643 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 0 15 10 / 20 = 0.50000 0.01536 ## TweakPsiSegment 0 3 1 / 6 = 0.16667 0.00143 ## TweakPsiPhiSubtree 3 14 4 / 21 = 0.19048 0.01101 ## TweakPsiPhiSegment 3 27 12 / 34 = 0.35294 0.02248 ## TweakHbondSubtree 1 28 10 / 42 = 0.23810 0.04931 ## TweakHbondSegment 0 7 3 / 14 = 0.21429 0.08052 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 21 7 / 40 = 0.17500 0.01868 ## ClashingRotamer 1 1 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 41 = 0.00000 0.00000 ## ReduceBreak 2 12 7 / 155 = 0.04516 0.08258 ## CloseGap 0 8 2 / 124 = 0.01613 0.00738 ## HealGap 0 8 0 / 117 = 0.00000 0.00000 ## MoveGap 0 40 22 / 193 = 0.11399 0.07644 ## ReduceConstraint 0 10 4 / 121 = 0.03306 0.02745 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 11 / 465 = 0.02366 0.03026 ## InsertFragment 0 25 14 / 210 = 0.06667 0.09157 ## TwoFragment 0 4 3 / 145 = 0.02069 0.03236 ## CrossOver 2 10 2 / 72 = 0.02778 0.00021 ## CrossAndInsert 2 1 1 / 178 = 0.00562 0.09175 ## ReduceClash 0 8 1 / 114 = 0.00877 0.00407 # Closing gap before 89 without wiggling. # generation 24: best score out of 20: T0287.try5 210.70703 cost/residue, 239 clashes 0.26646 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 19 7 / 22 = 0.31818 0.01568 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 17 11 / 23 = 0.47826 0.01347 ## TweakPsiSegment 0 4 1 / 7 = 0.14286 0.00123 ## TweakPsiPhiSubtree 3 14 4 / 23 = 0.17391 0.01005 ## TweakPsiPhiSegment 3 28 12 / 35 = 0.34286 0.02184 ## TweakHbondSubtree 1 31 12 / 48 = 0.25000 0.04888 ## TweakHbondSegment 0 13 7 / 25 = 0.28000 0.06157 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 21 7 / 40 = 0.17500 0.01868 ## ClashingRotamer 1 1 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 42 = 0.00000 0.00000 ## ReduceBreak 2 12 7 / 162 = 0.04321 0.07901 ## CloseGap 0 8 2 / 127 = 0.01575 0.00721 ## HealGap 0 8 0 / 118 = 0.00000 0.00000 ## MoveGap 0 40 22 / 201 = 0.10945 0.07339 ## ReduceConstraint 0 10 4 / 126 = 0.03175 0.02636 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 11 / 483 = 0.02277 0.02913 ## InsertFragment 0 25 14 / 222 = 0.06306 0.08662 ## TwoFragment 0 4 3 / 150 = 0.02000 0.03128 ## CrossOver 2 10 2 / 74 = 0.02703 0.00021 ## CrossAndInsert 2 1 1 / 181 = 0.00552 0.09023 ## ReduceClash 0 9 2 / 119 = 0.01681 0.00459 # Closing gap before 74 next to short segment # generation 25: best score out of 20: T0287.try5 210.18137 cost/residue, 223 clashes 0.26136 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 20 7 / 23 = 0.30435 0.01500 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 17 12 / 24 = 0.50000 0.01291 ## TweakPsiSegment 0 4 1 / 7 = 0.14286 0.00123 ## TweakPsiPhiSubtree 3 16 6 / 26 = 0.23077 0.00995 ## TweakPsiPhiSegment 4 32 15 / 40 = 0.37500 0.02151 ## TweakHbondSubtree 1 34 13 / 51 = 0.25490 0.04729 ## TweakHbondSegment 0 14 8 / 31 = 0.25806 0.06075 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 21 7 / 42 = 0.16667 0.01779 ## ClashingRotamer 1 1 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 44 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 171 = 0.04094 0.07485 ## CloseGap 0 8 2 / 132 = 0.01515 0.00694 ## HealGap 0 8 0 / 124 = 0.00000 0.00000 ## MoveGap 0 40 22 / 205 = 0.10732 0.07196 ## ReduceConstraint 0 10 4 / 131 = 0.03053 0.02535 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 12 / 499 = 0.02405 0.02970 ## InsertFragment 0 25 14 / 237 = 0.05907 0.08114 ## TwoFragment 0 4 3 / 156 = 0.01923 0.03008 ## CrossOver 2 10 2 / 75 = 0.02667 0.00020 ## CrossAndInsert 2 1 1 / 184 = 0.00543 0.08876 ## ReduceClash 0 9 2 / 124 = 0.01613 0.00440 # Closing gap before 74 next to short segment # generation 26: best score out of 20: T0287.try5 210.17728 cost/residue, 223 clashes 0.26224 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 23 9 / 27 = 0.33333 0.01278 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 18 13 / 26 = 0.50000 0.01193 ## TweakPsiSegment 0 5 1 / 8 = 0.12500 0.00108 ## TweakPsiPhiSubtree 3 17 6 / 27 = 0.22222 0.00959 ## TweakPsiPhiSegment 4 34 15 / 42 = 0.35714 0.02049 ## TweakHbondSubtree 1 35 13 / 53 = 0.24528 0.04550 ## TweakHbondSegment 0 16 10 / 38 = 0.26316 0.05073 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 22 7 / 45 = 0.15556 0.01661 ## ClashingRotamer 1 1 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 47 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 179 = 0.03911 0.07151 ## CloseGap 0 8 2 / 139 = 0.01439 0.00659 ## HealGap 0 8 0 / 130 = 0.00000 0.00000 ## MoveGap 0 40 22 / 212 = 0.10377 0.06959 ## ReduceConstraint 0 10 4 / 138 = 0.02899 0.02407 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 12 / 522 = 0.02299 0.02840 ## InsertFragment 0 25 14 / 242 = 0.05785 0.07946 ## TwoFragment 0 4 3 / 160 = 0.01875 0.02933 ## CrossOver 2 10 2 / 76 = 0.02632 0.00020 ## CrossAndInsert 2 1 1 / 189 = 0.00529 0.08641 ## ReduceClash 0 9 2 / 125 = 0.01600 0.00437 # Closing gap before 107 next to short segment # generation 27: best score out of 20: T0287.try5 210.00124 cost/residue, 224 clashes 0.26302 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 25 9 / 29 = 0.31034 0.01190 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 19 14 / 27 = 0.51852 0.01151 ## TweakPsiSegment 0 6 1 / 10 = 0.10000 0.00086 ## TweakPsiPhiSubtree 3 20 8 / 32 = 0.25000 0.01578 ## TweakPsiPhiSegment 4 35 15 / 44 = 0.34091 0.01956 ## TweakHbondSubtree 2 35 13 / 55 = 0.23636 0.04385 ## TweakHbondSegment 0 18 10 / 45 = 0.22222 0.04284 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 6 = 0.00000 0.00000 ## OneRotamer 0 22 7 / 48 = 0.14583 0.01557 ## ClashingRotamer 1 1 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 48 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 191 = 0.03665 0.06702 ## CloseGap 0 8 2 / 146 = 0.01370 0.00627 ## HealGap 0 8 0 / 132 = 0.00000 0.00000 ## MoveGap 0 40 22 / 219 = 0.10046 0.06736 ## ReduceConstraint 0 10 4 / 143 = 0.02797 0.02323 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 12 / 534 = 0.02247 0.02776 ## InsertFragment 0 25 14 / 245 = 0.05714 0.07849 ## TwoFragment 0 4 3 / 162 = 0.01852 0.02897 ## CrossOver 2 11 2 / 84 = 0.02381 0.00018 ## CrossAndInsert 3 1 1 / 195 = 0.00513 0.08375 ## ReduceClash 0 9 2 / 130 = 0.01538 0.00420 # generation 28: best score out of 20: T0287.try5 209.98520 cost/residue, 224 clashes 0.26320 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 1 26 9 / 31 = 0.29032 0.01113 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 20 15 / 28 = 0.53571 0.01130 ## TweakPsiSegment 0 7 1 / 11 = 0.09091 0.00078 ## TweakPsiPhiSubtree 3 22 10 / 36 = 0.27778 0.01539 ## TweakPsiPhiSegment 4 37 16 / 47 = 0.34043 0.01907 ## TweakHbondSubtree 2 36 13 / 58 = 0.22414 0.04158 ## TweakHbondSegment 0 21 12 / 52 = 0.23077 0.03778 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 6 = 0.00000 0.00000 ## OneRotamer 0 22 7 / 48 = 0.14583 0.01557 ## ClashingRotamer 1 1 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 50 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 199 = 0.03518 0.06432 ## CloseGap 0 8 2 / 149 = 0.01342 0.00615 ## HealGap 0 8 0 / 135 = 0.00000 0.00000 ## MoveGap 0 40 22 / 223 = 0.09865 0.06615 ## ReduceConstraint 0 10 4 / 146 = 0.02740 0.02275 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 12 / 555 = 0.02162 0.02671 ## InsertFragment 0 26 15 / 256 = 0.05859 0.07551 ## TwoFragment 0 4 3 / 169 = 0.01775 0.02777 ## CrossOver 2 11 2 / 84 = 0.02381 0.00018 ## CrossAndInsert 3 1 1 / 203 = 0.00493 0.08045 ## ReduceClash 0 9 2 / 133 = 0.01504 0.00410 # generation 29: best score out of 20: T0287.try5 209.96140 cost/residue, 226 clashes 0.26356 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 28 10 / 33 = 0.30303 0.01046 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 23 16 / 32 = 0.50000 0.00994 ## TweakPsiSegment 0 7 1 / 11 = 0.09091 0.00078 ## TweakPsiPhiSubtree 3 26 10 / 43 = 0.23256 0.01288 ## TweakPsiPhiSegment 5 39 17 / 52 = 0.32692 0.01788 ## TweakHbondSubtree 2 38 15 / 63 = 0.23810 0.03957 ## TweakHbondSegment 0 21 13 / 55 = 0.23636 0.03806 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 1 / 7 = 0.14286 0.00396 ## OneRotamer 0 22 7 / 53 = 0.13208 0.01410 ## ClashingRotamer 1 1 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 51 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 208 = 0.03365 0.06154 ## CloseGap 0 8 2 / 152 = 0.01316 0.00602 ## HealGap 0 8 1 / 140 = 0.00714 0.00009 ## MoveGap 0 40 22 / 227 = 0.09692 0.06499 ## ReduceConstraint 0 10 4 / 149 = 0.02685 0.02229 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 12 / 570 = 0.02105 0.02600 ## InsertFragment 0 27 16 / 268 = 0.05970 0.07256 ## TwoFragment 0 4 3 / 172 = 0.01744 0.02728 ## CrossOver 2 11 2 / 86 = 0.02326 0.00018 ## CrossAndInsert 3 1 1 / 207 = 0.00483 0.07890 ## ReduceClash 0 9 2 / 136 = 0.01471 0.00401 # generation 30: best score out of 20: T0287.try5 209.56648 cost/residue, 224 clashes 0.26363 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 29 11 / 34 = 0.32353 0.01410 ## TweakPhiSegment 0 6 1 / 10 = 0.10000 0.00937 ## TweakPsiSubtree 0 24 17 / 36 = 0.47222 0.01333 ## TweakPsiSegment 0 8 2 / 12 = 0.16667 0.03363 ## TweakPsiPhiSubtree 4 27 10 / 45 = 0.22222 0.01231 ## TweakPsiPhiSegment 5 40 17 / 53 = 0.32075 0.01754 ## TweakHbondSubtree 2 40 16 / 69 = 0.23188 0.03825 ## TweakHbondSegment 0 23 16 / 64 = 0.25000 0.03455 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 3 / 11 = 0.27273 0.00437 ## OneRotamer 0 22 7 / 54 = 0.12963 0.01384 ## ClashingRotamer 1 1 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 51 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 214 = 0.03271 0.05981 ## CloseGap 0 8 2 / 159 = 0.01258 0.00576 ## HealGap 0 8 1 / 144 = 0.00694 0.00009 ## MoveGap 0 40 22 / 236 = 0.09322 0.06251 ## ReduceConstraint 0 10 4 / 154 = 0.02597 0.02157 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 583 = 0.02230 0.02585 ## InsertFragment 0 27 16 / 279 = 0.05735 0.06970 ## TwoFragment 0 4 3 / 176 = 0.01705 0.02666 ## CrossOver 2 11 2 / 86 = 0.02326 0.00018 ## CrossAndInsert 3 1 1 / 211 = 0.00474 0.07740 ## ReduceClash 0 10 3 / 141 = 0.02128 0.00655 # generation 31: best score out of 20: T0287.try5 209.36510 cost/residue, 221 clashes 0.26356 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 30 11 / 35 = 0.31429 0.01369 ## TweakPhiSegment 0 6 2 / 12 = 0.16667 0.00781 ## TweakPsiSubtree 0 25 18 / 37 = 0.48649 0.01299 ## TweakPsiSegment 0 12 4 / 19 = 0.21053 0.02183 ## TweakPsiPhiSubtree 4 27 10 / 46 = 0.21739 0.01204 ## TweakPsiPhiSegment 5 42 17 / 57 = 0.29825 0.01631 ## TweakHbondSubtree 3 41 17 / 75 = 0.22667 0.03570 ## TweakHbondSegment 0 25 17 / 73 = 0.23288 0.03116 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 13 = 0.30769 0.00494 ## OneRotamer 0 23 8 / 56 = 0.14286 0.02399 ## ClashingRotamer 1 1 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 54 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 217 = 0.03226 0.05899 ## CloseGap 0 8 2 / 164 = 0.01220 0.00558 ## HealGap 0 8 1 / 145 = 0.00690 0.00009 ## MoveGap 0 40 22 / 239 = 0.09205 0.06172 ## ReduceConstraint 0 10 4 / 156 = 0.02564 0.02129 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 602 = 0.02159 0.02504 ## InsertFragment 0 27 16 / 283 = 0.05654 0.06871 ## TwoFragment 0 4 3 / 183 = 0.01639 0.02564 ## CrossOver 2 11 2 / 86 = 0.02326 0.00018 ## CrossAndInsert 3 1 1 / 220 = 0.00455 0.07424 ## ReduceClash 0 10 3 / 145 = 0.02069 0.00637 # generation 32: best score out of 20: T0287.try5 209.36510 cost/residue, 221 clashes 0.26356 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 31 11 / 38 = 0.28947 0.01261 ## TweakPhiSegment 0 7 2 / 15 = 0.13333 0.00624 ## TweakPsiSubtree 0 26 18 / 41 = 0.43902 0.01173 ## TweakPsiSegment 0 14 5 / 23 = 0.21739 0.01838 ## TweakPsiPhiSubtree 4 27 10 / 47 = 0.21277 0.01179 ## TweakPsiPhiSegment 6 44 17 / 62 = 0.27419 0.01499 ## TweakHbondSubtree 3 45 17 / 84 = 0.20238 0.03187 ## TweakHbondSegment 1 27 19 / 77 = 0.24675 0.03559 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 13 = 0.30769 0.00494 ## OneRotamer 0 23 9 / 61 = 0.14754 0.02267 ## ClashingRotamer 1 1 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 55 = 0.00000 0.00000 ## ReduceBreak 3 12 7 / 223 = 0.03139 0.05740 ## CloseGap 0 8 2 / 165 = 0.01212 0.00555 ## HealGap 0 8 1 / 149 = 0.00671 0.00008 ## MoveGap 0 40 22 / 243 = 0.09053 0.06071 ## ReduceConstraint 0 10 4 / 160 = 0.02500 0.02076 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 618 = 0.02104 0.02439 ## InsertFragment 0 27 16 / 286 = 0.05594 0.06799 ## TwoFragment 0 4 3 / 187 = 0.01604 0.02509 ## CrossOver 2 11 2 / 90 = 0.02222 0.00017 ## CrossAndInsert 3 1 1 / 226 = 0.00442 0.07227 ## ReduceClash 0 10 3 / 152 = 0.01974 0.00607 # generation 33: best score out of 20: T0287.try5 209.32581 cost/residue, 223 clashes 0.27181 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 32 12 / 39 = 0.30769 0.01229 ## TweakPhiSegment 0 10 3 / 19 = 0.15789 0.00493 ## TweakPsiSubtree 0 29 20 / 44 = 0.45455 0.01100 ## TweakPsiSegment 0 17 7 / 29 = 0.24138 0.01483 ## TweakPsiPhiSubtree 4 28 10 / 49 = 0.20408 0.01131 ## TweakPsiPhiSegment 6 44 18 / 65 = 0.27692 0.01439 ## TweakHbondSubtree 3 45 17 / 89 = 0.19101 0.03008 ## TweakHbondSegment 1 28 19 / 86 = 0.22093 0.03186 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 14 = 0.28571 0.00459 ## OneRotamer 0 24 10 / 67 = 0.14925 0.02082 ## ClashingRotamer 1 1 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 56 = 0.00000 0.00000 ## ReduceBreak 3 13 8 / 231 = 0.03463 0.05560 ## CloseGap 0 8 2 / 169 = 0.01183 0.00542 ## HealGap 0 8 1 / 155 = 0.00645 0.00008 ## MoveGap 0 40 22 / 245 = 0.08980 0.06021 ## ReduceConstraint 0 10 4 / 161 = 0.02484 0.02063 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 632 = 0.02057 0.02385 ## InsertFragment 0 27 16 / 290 = 0.05517 0.06705 ## TwoFragment 0 4 3 / 194 = 0.01546 0.02419 ## CrossOver 2 12 2 / 91 = 0.02198 0.00017 ## CrossAndInsert 3 1 1 / 228 = 0.00439 0.07163 ## ReduceClash 0 10 3 / 157 = 0.01911 0.00588 # generation 34: best score out of 20: T0287.try5 209.29662 cost/residue, 217 clashes 0.26356 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 8 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 10 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 34 13 / 43 = 0.30233 0.01115 ## TweakPhiSegment 0 11 3 / 20 = 0.15000 0.00468 ## TweakPsiSubtree 0 30 20 / 46 = 0.43478 0.01052 ## TweakPsiSegment 0 20 7 / 33 = 0.21212 0.01303 ## TweakPsiPhiSubtree 5 28 10 / 50 = 0.20000 0.01108 ## TweakPsiPhiSegment 6 44 18 / 66 = 0.27273 0.01417 ## TweakHbondSubtree 3 47 18 / 93 = 0.19355 0.02931 ## TweakHbondSegment 1 29 20 / 94 = 0.21277 0.02994 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 4 / 16 = 0.25000 0.00401 ## OneRotamer 0 25 11 / 74 = 0.14865 0.01985 ## ClashingRotamer 1 1 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 57 = 0.00000 0.00000 ## ReduceBreak 3 13 8 / 236 = 0.03390 0.05443 ## CloseGap 0 8 2 / 173 = 0.01156 0.00529 ## HealGap 0 8 1 / 158 = 0.00633 0.00008 ## MoveGap 0 40 22 / 248 = 0.08871 0.05948 ## ReduceConstraint 0 10 4 / 166 = 0.02410 0.02001 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 647 = 0.02009 0.02330 ## InsertFragment 0 27 16 / 299 = 0.05351 0.06503 ## TwoFragment 0 4 3 / 198 = 0.01515 0.02370 ## CrossOver 2 12 2 / 96 = 0.02083 0.00016 ## CrossAndInsert 4 1 1 / 234 = 0.00427 0.06979 ## ReduceClash 0 10 3 / 160 = 0.01875 0.00577 # generation 35: best score out of 20: T0287.try5 209.12952 cost/residue, 222 clashes 0.27067 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 0 / 9 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 35 13 / 44 = 0.29545 0.01089 ## TweakPhiSegment 0 11 3 / 20 = 0.15000 0.00468 ## TweakPsiSubtree 0 30 20 / 48 = 0.41667 0.01008 ## TweakPsiSegment 0 23 8 / 37 = 0.21622 0.01162 ## TweakPsiPhiSubtree 5 29 10 / 52 = 0.19231 0.01065 ## TweakPsiPhiSegment 6 45 18 / 68 = 0.26471 0.01375 ## TweakHbondSubtree 3 50 20 / 97 = 0.20619 0.03023 ## TweakHbondSegment 2 29 20 / 97 = 0.20619 0.02901 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 4 / 17 = 0.23529 0.00378 ## OneRotamer 0 26 12 / 81 = 0.14815 0.01820 ## ClashingRotamer 1 1 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 57 = 0.00000 0.00000 ## ReduceBreak 3 13 8 / 245 = 0.03265 0.05243 ## CloseGap 0 8 2 / 176 = 0.01136 0.00520 ## HealGap 0 8 1 / 158 = 0.00633 0.00008 ## MoveGap 0 40 22 / 256 = 0.08594 0.05763 ## ReduceConstraint 0 10 4 / 169 = 0.02367 0.01965 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 659 = 0.01973 0.02287 ## InsertFragment 0 27 16 / 304 = 0.05263 0.06397 ## TwoFragment 0 4 3 / 209 = 0.01435 0.02245 ## CrossOver 2 13 3 / 99 = 0.03030 0.00017 ## CrossAndInsert 5 1 1 / 239 = 0.00418 0.06833 ## ReduceClash 0 10 3 / 166 = 0.01807 0.00556 # Closing gap before 75 next to short segment # generation 36: best score out of 20: T0287.try5 208.91559 cost/residue, 222 clashes 0.27146 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 10 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 0 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 35 13 / 44 = 0.29545 0.01089 ## TweakPhiSegment 0 11 3 / 22 = 0.13636 0.00426 ## TweakPsiSubtree 0 31 21 / 49 = 0.42857 0.00988 ## TweakPsiSegment 0 24 9 / 39 = 0.23077 0.01245 ## TweakPsiPhiSubtree 5 30 11 / 54 = 0.20370 0.01163 ## TweakPsiPhiSegment 7 46 19 / 71 = 0.26761 0.01619 ## TweakHbondSubtree 3 51 20 / 104 = 0.19231 0.02820 ## TweakHbondSegment 3 32 22 / 102 = 0.21569 0.02895 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 10 5 / 18 = 0.27778 0.00364 ## OneRotamer 0 27 13 / 85 = 0.15294 0.01788 ## ClashingRotamer 1 1 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 58 = 0.00000 0.00000 ## ReduceBreak 3 13 8 / 248 = 0.03226 0.05179 ## CloseGap 0 8 2 / 180 = 0.01111 0.00509 ## HealGap 0 8 1 / 162 = 0.00617 0.00008 ## MoveGap 0 41 22 / 263 = 0.08365 0.05609 ## ReduceConstraint 0 10 4 / 171 = 0.02339 0.01942 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 23 14 / 677 = 0.02068 0.02245 ## InsertFragment 0 28 17 / 313 = 0.05431 0.06320 ## TwoFragment 0 4 3 / 218 = 0.01376 0.02153 ## CrossOver 2 13 3 / 100 = 0.03000 0.00016 ## CrossAndInsert 5 1 1 / 244 = 0.00410 0.06693 ## ReduceClash 0 10 3 / 173 = 0.01734 0.00534 # generation 37: best score out of 20: T0287.try5 208.30829 cost/residue, 214 clashes 0.30846 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 10 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 40 13 / 51 = 0.25490 0.00940 ## TweakPhiSegment 0 11 3 / 24 = 0.12500 0.00390 ## TweakPsiSubtree 0 33 23 / 54 = 0.42593 0.00897 ## TweakPsiSegment 0 26 9 / 43 = 0.20930 0.01129 ## TweakPsiPhiSubtree 5 30 11 / 54 = 0.20370 0.01163 ## TweakPsiPhiSegment 7 48 19 / 73 = 0.26027 0.01574 ## TweakHbondSubtree 3 52 21 / 108 = 0.19444 0.02736 ## TweakHbondSegment 3 34 23 / 110 = 0.20909 0.02925 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 10 6 / 19 = 0.31579 0.00386 ## OneRotamer 0 27 13 / 88 = 0.14773 0.01727 ## ClashingRotamer 1 1 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 60 = 0.00000 0.00000 ## ReduceBreak 3 13 8 / 254 = 0.03150 0.05057 ## CloseGap 0 8 2 / 183 = 0.01093 0.00500 ## HealGap 0 8 1 / 166 = 0.00602 0.00007 ## MoveGap 0 41 22 / 267 = 0.08240 0.05525 ## ReduceConstraint 0 10 4 / 174 = 0.02299 0.01909 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 693 = 0.02165 0.02329 ## InsertFragment 0 28 17 / 318 = 0.05346 0.06221 ## TwoFragment 0 4 3 / 223 = 0.01345 0.02104 ## CrossOver 2 13 3 / 103 = 0.02913 0.00016 ## CrossAndInsert 5 1 1 / 253 = 0.00395 0.06455 ## ReduceClash 0 10 3 / 174 = 0.01724 0.00531 # generation 38: best score out of 20: T0287.try5 208.30829 cost/residue, 214 clashes 0.30846 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 10 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 42 14 / 57 = 0.24561 0.00841 ## TweakPhiSegment 1 11 3 / 24 = 0.12500 0.00390 ## TweakPsiSubtree 0 33 23 / 55 = 0.41818 0.00881 ## TweakPsiSegment 0 29 11 / 48 = 0.22917 0.01021 ## TweakPsiPhiSubtree 6 32 12 / 57 = 0.21053 0.01102 ## TweakPsiPhiSegment 7 50 21 / 76 = 0.27632 0.01529 ## TweakHbondSubtree 3 54 21 / 112 = 0.18750 0.02638 ## TweakHbondSegment 3 35 23 / 116 = 0.19828 0.02773 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 7 / 20 = 0.35000 0.00370 ## OneRotamer 0 29 15 / 93 = 0.16129 0.02720 ## ClashingRotamer 1 1 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 60 = 0.00000 0.00000 ## ReduceBreak 3 13 8 / 264 = 0.03030 0.04865 ## CloseGap 0 8 2 / 190 = 0.01053 0.00482 ## HealGap 0 8 1 / 171 = 0.00585 0.00007 ## MoveGap 0 41 22 / 273 = 0.08059 0.05404 ## ReduceConstraint 0 10 4 / 178 = 0.02247 0.01866 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 708 = 0.02119 0.02280 ## InsertFragment 0 28 17 / 324 = 0.05247 0.06106 ## TwoFragment 0 4 3 / 227 = 0.01322 0.02067 ## CrossOver 2 13 3 / 104 = 0.02885 0.00016 ## CrossAndInsert 5 1 1 / 257 = 0.00389 0.06355 ## ReduceClash 0 10 3 / 175 = 0.01714 0.00528 # Closing gap before 75 next to short segment # generation 39: best score out of 20: T0287.try5 208.27214 cost/residue, 214 clashes 0.30850 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 10 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 43 15 / 58 = 0.25862 0.00827 ## TweakPhiSegment 1 12 3 / 25 = 0.12000 0.00375 ## TweakPsiSubtree 0 34 23 / 56 = 0.41071 0.00865 ## TweakPsiSegment 0 30 12 / 49 = 0.24490 0.01001 ## TweakPsiPhiSubtree 6 33 12 / 59 = 0.20339 0.01065 ## TweakPsiPhiSegment 8 54 24 / 83 = 0.28916 0.01568 ## TweakHbondSubtree 3 56 21 / 118 = 0.17797 0.02504 ## TweakHbondSegment 4 36 25 / 123 = 0.20325 0.02642 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 12 8 / 21 = 0.38095 0.00366 ## OneRotamer 0 29 15 / 97 = 0.15464 0.02608 ## ClashingRotamer 1 1 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 62 = 0.00000 0.00000 ## ReduceBreak 3 13 8 / 267 = 0.02996 0.04811 ## CloseGap 0 8 2 / 194 = 0.01031 0.00472 ## HealGap 0 8 1 / 174 = 0.00575 0.00007 ## MoveGap 0 41 22 / 282 = 0.07801 0.05231 ## ReduceConstraint 0 10 4 / 181 = 0.02210 0.01835 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 726 = 0.02066 0.02223 ## InsertFragment 0 29 17 / 331 = 0.05136 0.05977 ## TwoFragment 0 4 3 / 230 = 0.01304 0.02040 ## CrossOver 2 13 3 / 105 = 0.02857 0.00016 ## CrossAndInsert 5 1 1 / 264 = 0.00379 0.06186 ## ReduceClash 0 10 3 / 180 = 0.01667 0.00513 # generation 40: best score out of 20: T0287.try5 208.19843 cost/residue, 212 clashes 0.31287 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 10 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 44 15 / 60 = 0.25000 0.00799 ## TweakPhiSegment 1 12 3 / 26 = 0.11538 0.00360 ## TweakPsiSubtree 0 36 24 / 60 = 0.40000 0.00825 ## TweakPsiSegment 0 32 14 / 54 = 0.25926 0.00927 ## TweakPsiPhiSubtree 8 34 13 / 61 = 0.21311 0.01064 ## TweakPsiPhiSegment 9 56 26 / 90 = 0.28889 0.01481 ## TweakHbondSubtree 3 57 22 / 121 = 0.18182 0.02470 ## TweakHbondSegment 4 38 26 / 135 = 0.19259 0.02489 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 13 9 / 24 = 0.37500 0.00336 ## OneRotamer 0 29 15 / 102 = 0.14706 0.02480 ## ClashingRotamer 1 1 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 63 = 0.00000 0.00000 ## ReduceBreak 4 13 8 / 270 = 0.02963 0.04757 ## CloseGap 0 8 2 / 195 = 0.01026 0.00470 ## HealGap 0 8 1 / 178 = 0.00562 0.00007 ## MoveGap 0 41 22 / 287 = 0.07666 0.05140 ## ReduceConstraint 0 10 4 / 184 = 0.02174 0.01805 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 740 = 0.02027 0.02181 ## InsertFragment 0 29 17 / 337 = 0.05045 0.05870 ## TwoFragment 0 4 3 / 236 = 0.01271 0.01988 ## CrossOver 2 13 3 / 107 = 0.02804 0.00015 ## CrossAndInsert 5 1 1 / 270 = 0.00370 0.06049 ## ReduceClash 0 10 3 / 183 = 0.01639 0.00504 # generation 41: best score out of 20: T0287.try5 207.88466 cost/residue, 214 clashes 0.30799 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 11 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 44 15 / 60 = 0.25000 0.00799 ## TweakPhiSegment 1 13 3 / 27 = 0.11111 0.00347 ## TweakPsiSubtree 0 37 25 / 63 = 0.39683 0.00808 ## TweakPsiSegment 0 34 15 / 59 = 0.25424 0.00955 ## TweakPsiPhiSubtree 8 35 14 / 66 = 0.21212 0.01077 ## TweakPsiPhiSegment 10 58 28 / 92 = 0.30435 0.01472 ## TweakHbondSubtree 3 57 22 / 124 = 0.17742 0.02410 ## TweakHbondSegment 4 44 30 / 145 = 0.20690 0.02542 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 13 10 / 26 = 0.38462 0.00318 ## OneRotamer 0 29 15 / 110 = 0.13636 0.02299 ## ClashingRotamer 1 1 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 64 = 0.00000 0.00000 ## ReduceBreak 4 14 9 / 277 = 0.03249 0.04783 ## CloseGap 0 8 2 / 198 = 0.01010 0.00462 ## HealGap 0 8 1 / 182 = 0.00549 0.00007 ## MoveGap 0 41 22 / 291 = 0.07560 0.05069 ## ReduceConstraint 0 10 4 / 190 = 0.02105 0.01748 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 750 = 0.02000 0.02152 ## InsertFragment 0 29 17 / 343 = 0.04956 0.05768 ## TwoFragment 0 4 3 / 238 = 0.01261 0.01972 ## CrossOver 2 14 3 / 111 = 0.02703 0.00015 ## CrossAndInsert 5 1 1 / 274 = 0.00365 0.05961 ## ReduceClash 0 10 3 / 186 = 0.01613 0.00496 # generation 42: best score out of 20: T0287.try5 207.80237 cost/residue, 214 clashes 0.30676 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 11 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 44 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 44 15 / 61 = 0.24590 0.00786 ## TweakPhiSegment 1 14 3 / 30 = 0.10000 0.00312 ## TweakPsiSubtree 0 40 25 / 68 = 0.36765 0.00749 ## TweakPsiSegment 0 35 15 / 61 = 0.24590 0.00924 ## TweakPsiPhiSubtree 8 35 15 / 68 = 0.22059 0.01059 ## TweakPsiPhiSegment 12 62 31 / 99 = 0.31313 0.01455 ## TweakHbondSubtree 3 59 23 / 130 = 0.17692 0.02310 ## TweakHbondSegment 4 46 31 / 149 = 0.20805 0.02604 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 13 10 / 26 = 0.38462 0.00318 ## OneRotamer 0 30 16 / 119 = 0.13445 0.02280 ## ClashingRotamer 1 1 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 0 5 1 / 67 = 0.01493 0.00216 ## ReduceBreak 4 15 10 / 280 = 0.03571 0.04761 ## CloseGap 0 8 2 / 202 = 0.00990 0.00453 ## HealGap 0 8 1 / 184 = 0.00543 0.00007 ## MoveGap 0 41 22 / 294 = 0.07483 0.05018 ## ReduceConstraint 0 10 4 / 194 = 0.02062 0.01712 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 764 = 0.01963 0.02112 ## InsertFragment 0 29 17 / 354 = 0.04802 0.05588 ## TwoFragment 0 4 3 / 240 = 0.01250 0.01955 ## CrossOver 2 14 3 / 113 = 0.02655 0.00014 ## CrossAndInsert 5 1 1 / 279 = 0.00358 0.05854 ## ReduceClash 0 10 3 / 188 = 0.01596 0.00491 # generation 43: best score out of 20: T0287.try5 207.79504 cost/residue, 222 clashes 0.31052 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 11 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 44 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 1 45 15 / 63 = 0.23810 0.00761 ## TweakPhiSegment 1 17 3 / 35 = 0.08571 0.00268 ## TweakPsiSubtree 0 40 25 / 70 = 0.35714 0.00727 ## TweakPsiSegment 0 36 15 / 63 = 0.23810 0.00895 ## TweakPsiPhiSubtree 8 35 15 / 73 = 0.20548 0.00986 ## TweakPsiPhiSegment 12 66 34 / 106 = 0.32075 0.01405 ## TweakHbondSubtree 3 60 23 / 132 = 0.17424 0.02275 ## TweakHbondSegment 4 47 31 / 158 = 0.19620 0.02456 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 11 / 27 = 0.40741 0.00313 ## OneRotamer 0 30 16 / 124 = 0.12903 0.02188 ## ClashingRotamer 1 1 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 0 5 1 / 71 = 0.01408 0.00204 ## ReduceBreak 4 16 11 / 288 = 0.03819 0.04661 ## CloseGap 0 8 2 / 204 = 0.00980 0.00449 ## HealGap 0 8 1 / 187 = 0.00535 0.00007 ## MoveGap 0 41 22 / 303 = 0.07261 0.04869 ## ReduceConstraint 0 10 4 / 200 = 0.02000 0.01661 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 15 / 776 = 0.01933 0.02080 ## InsertFragment 0 30 18 / 359 = 0.05014 0.05605 ## TwoFragment 0 4 3 / 242 = 0.01240 0.01939 ## CrossOver 2 14 3 / 114 = 0.02632 0.00014 ## CrossAndInsert 5 1 1 / 284 = 0.00352 0.05751 ## ReduceClash 0 10 3 / 189 = 0.01587 0.00488 # generation 44: best score out of 20: T0287.try5 206.42252 cost/residue, 252 clashes 0.31052 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 12 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 44 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 1 45 15 / 64 = 0.23438 0.00749 ## TweakPhiSegment 1 17 3 / 35 = 0.08571 0.00268 ## TweakPsiSubtree 0 41 25 / 71 = 0.35211 0.00717 ## TweakPsiSegment 0 37 17 / 67 = 0.25373 0.00857 ## TweakPsiPhiSubtree 8 35 15 / 75 = 0.20000 0.00960 ## TweakPsiPhiSegment 14 67 34 / 112 = 0.30357 0.01330 ## TweakHbondSubtree 4 62 24 / 135 = 0.17778 0.02234 ## TweakHbondSegment 4 49 33 / 161 = 0.20497 0.02496 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 12 / 29 = 0.41379 0.00318 ## OneRotamer 0 34 19 / 135 = 0.14074 0.02156 ## ClashingRotamer 1 1 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 0 5 1 / 77 = 0.01299 0.00188 ## ReduceBreak 4 16 11 / 296 = 0.03716 0.04535 ## CloseGap 0 8 2 / 209 = 0.00957 0.00438 ## HealGap 0 8 1 / 190 = 0.00526 0.00006 ## MoveGap 0 41 22 / 310 = 0.07097 0.04759 ## ReduceConstraint 0 10 4 / 205 = 0.01951 0.01620 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 16 / 786 = 0.02036 0.02228 ## InsertFragment 0 30 18 / 367 = 0.04905 0.05483 ## TwoFragment 0 5 4 / 245 = 0.01633 0.02062 ## CrossOver 2 14 3 / 115 = 0.02609 0.00014 ## CrossAndInsert 5 1 1 / 289 = 0.00346 0.05651 ## ReduceClash 0 11 4 / 191 = 0.02094 0.00713 # generation 45: best score out of 20: T0287.try5 205.82184 cost/residue, 243 clashes 0.30863 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 1 49 16 / 69 = 0.23188 0.00771 ## TweakPhiSegment 1 17 4 / 38 = 0.10526 0.00423 ## TweakPsiSubtree 0 42 26 / 74 = 0.35135 0.00693 ## TweakPsiSegment 0 39 19 / 70 = 0.27143 0.00930 ## TweakPsiPhiSubtree 8 36 18 / 78 = 0.23077 0.01093 ## TweakPsiPhiSegment 14 67 34 / 112 = 0.30357 0.01330 ## TweakHbondSubtree 4 64 25 / 143 = 0.17483 0.02116 ## TweakHbondSegment 4 49 35 / 167 = 0.20958 0.02480 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 17 13 / 32 = 0.40625 0.00299 ## OneRotamer 0 37 20 / 145 = 0.13793 0.02225 ## ClashingRotamer 1 1 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 0 5 1 / 79 = 0.01266 0.00183 ## ReduceBreak 4 16 11 / 299 = 0.03679 0.04490 ## CloseGap 0 8 2 / 209 = 0.00957 0.00438 ## HealGap 0 8 1 / 191 = 0.00524 0.00006 ## MoveGap 0 41 22 / 314 = 0.07006 0.04698 ## ReduceConstraint 0 10 4 / 207 = 0.01932 0.01605 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 16 / 799 = 0.02003 0.02192 ## InsertFragment 0 31 19 / 377 = 0.05040 0.05376 ## TwoFragment 0 5 4 / 250 = 0.01600 0.02020 ## CrossOver 2 14 3 / 116 = 0.02586 0.00014 ## CrossAndInsert 5 1 1 / 291 = 0.00344 0.05612 ## ReduceClash 0 12 5 / 200 = 0.02500 0.00981 # generation 46: best score out of 20: T0287.try5 205.72955 cost/residue, 243 clashes 0.30915 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 1 49 16 / 69 = 0.23188 0.00771 ## TweakPhiSegment 1 17 4 / 38 = 0.10526 0.00423 ## TweakPsiSubtree 0 42 26 / 74 = 0.35135 0.00693 ## TweakPsiSegment 0 40 20 / 72 = 0.27778 0.00909 ## TweakPsiPhiSubtree 9 38 20 / 82 = 0.24390 0.01125 ## TweakPsiPhiSegment 14 70 38 / 118 = 0.32203 0.01410 ## TweakHbondSubtree 4 65 27 / 146 = 0.18493 0.02089 ## TweakHbondSegment 4 53 36 / 176 = 0.20455 0.02444 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 17 13 / 34 = 0.38235 0.00282 ## OneRotamer 0 38 20 / 156 = 0.12821 0.02068 ## ClashingRotamer 1 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 0 6 1 / 82 = 0.01220 0.00176 ## ReduceBreak 4 16 11 / 305 = 0.03607 0.04401 ## CloseGap 0 8 2 / 210 = 0.00952 0.00436 ## HealGap 0 8 1 / 195 = 0.00513 0.00006 ## MoveGap 0 41 22 / 317 = 0.06940 0.04654 ## ReduceConstraint 0 10 4 / 209 = 0.01914 0.01589 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 812 = 0.01970 0.02157 ## InsertFragment 0 31 19 / 387 = 0.04910 0.05237 ## TwoFragment 0 5 4 / 255 = 0.01569 0.01981 ## CrossOver 2 14 3 / 118 = 0.02542 0.00014 ## CrossAndInsert 5 1 1 / 295 = 0.00339 0.05536 ## ReduceClash 0 13 6 / 208 = 0.02885 0.00985 # generation 47: best score out of 20: T0287.try5 205.69711 cost/residue, 242 clashes 0.30960 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 1 50 16 / 71 = 0.22535 0.00750 ## TweakPhiSegment 1 18 5 / 40 = 0.12500 0.00402 ## TweakPsiSubtree 0 43 28 / 77 = 0.36364 0.00765 ## TweakPsiSegment 0 41 22 / 76 = 0.28947 0.00863 ## TweakPsiPhiSubtree 10 40 21 / 88 = 0.23864 0.01074 ## TweakPsiPhiSegment 15 72 39 / 123 = 0.31707 0.01362 ## TweakHbondSubtree 4 66 29 / 148 = 0.19595 0.02292 ## TweakHbondSegment 5 57 41 / 184 = 0.22283 0.02430 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 17 13 / 35 = 0.37143 0.00274 ## OneRotamer 0 38 21 / 164 = 0.12805 0.02156 ## ClashingRotamer 1 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 0 6 2 / 84 = 0.02381 0.00240 ## ReduceBreak 4 16 11 / 308 = 0.03571 0.04359 ## CloseGap 0 8 2 / 213 = 0.00939 0.00430 ## HealGap 0 8 1 / 195 = 0.00513 0.00006 ## MoveGap 0 41 22 / 318 = 0.06918 0.04639 ## ReduceConstraint 0 10 4 / 212 = 0.01887 0.01567 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 830 = 0.01928 0.02110 ## InsertFragment 0 31 19 / 391 = 0.04859 0.05184 ## TwoFragment 0 5 4 / 259 = 0.01544 0.01950 ## CrossOver 2 14 3 / 118 = 0.02542 0.00014 ## CrossAndInsert 5 1 1 / 302 = 0.00331 0.05408 ## ReduceClash 0 14 7 / 218 = 0.03211 0.00967 # generation 48: best score out of 20: T0287.try5 205.58673 cost/residue, 240 clashes 0.30904 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 0 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 1 50 16 / 73 = 0.21918 0.00729 ## TweakPhiSegment 1 18 5 / 40 = 0.12500 0.00402 ## TweakPsiSubtree 0 46 31 / 85 = 0.36471 0.00886 ## TweakPsiSegment 0 42 23 / 79 = 0.29114 0.00841 ## TweakPsiPhiSubtree 10 43 23 / 93 = 0.24731 0.01079 ## TweakPsiPhiSegment 15 74 41 / 127 = 0.32283 0.01353 ## TweakHbondSubtree 4 67 29 / 152 = 0.19079 0.02232 ## TweakHbondSegment 5 58 41 / 190 = 0.21579 0.02353 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 17 13 / 36 = 0.36111 0.00266 ## OneRotamer 0 39 22 / 171 = 0.12865 0.02110 ## ClashingRotamer 1 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 0 6 2 / 88 = 0.02273 0.00229 ## ReduceBreak 4 16 11 / 312 = 0.03526 0.04303 ## CloseGap 0 8 2 / 217 = 0.00922 0.00422 ## HealGap 0 8 1 / 196 = 0.00510 0.00006 ## MoveGap 0 41 22 / 318 = 0.06918 0.04639 ## ReduceConstraint 0 10 4 / 214 = 0.01869 0.01552 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 852 = 0.01878 0.02055 ## InsertFragment 0 31 19 / 395 = 0.04810 0.05131 ## TwoFragment 0 5 4 / 265 = 0.01509 0.01906 ## CrossOver 2 14 3 / 120 = 0.02500 0.00014 ## CrossAndInsert 5 1 1 / 304 = 0.00329 0.05372 ## ReduceClash 0 14 7 / 227 = 0.03084 0.00929 # generation 49: best score out of 20: T0287.try5 205.58673 cost/residue, 240 clashes 0.30904 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 11 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 1 51 17 / 75 = 0.22667 0.00710 ## TweakPhiSegment 1 20 6 / 43 = 0.13953 0.00374 ## TweakPsiSubtree 0 47 31 / 92 = 0.33696 0.00819 ## TweakPsiSegment 0 45 24 / 85 = 0.28235 0.00783 ## TweakPsiPhiSubtree 10 43 23 / 95 = 0.24211 0.01057 ## TweakPsiPhiSegment 15 75 42 / 132 = 0.31818 0.01315 ## TweakHbondSubtree 4 69 30 / 157 = 0.19108 0.02161 ## TweakHbondSegment 5 59 42 / 197 = 0.21320 0.02289 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 17 13 / 38 = 0.34211 0.00252 ## OneRotamer 0 39 22 / 179 = 0.12291 0.02015 ## ClashingRotamer 1 2 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 90 = 0.03333 0.00342 ## ReduceBreak 4 16 11 / 316 = 0.03481 0.04248 ## CloseGap 0 8 2 / 218 = 0.00917 0.00420 ## HealGap 0 8 1 / 197 = 0.00508 0.00006 ## MoveGap 0 41 22 / 319 = 0.06897 0.04625 ## ReduceConstraint 0 10 4 / 219 = 0.01826 0.01517 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 861 = 0.01858 0.02034 ## InsertFragment 0 31 19 / 400 = 0.04750 0.05067 ## TwoFragment 0 5 4 / 272 = 0.01471 0.01857 ## CrossOver 2 14 3 / 124 = 0.02419 0.00013 ## CrossAndInsert 5 1 1 / 304 = 0.00329 0.05372 ## ReduceClash 0 14 7 / 237 = 0.02954 0.00889 # generation 50: best score out of 20: T0287.try5 205.44931 cost/residue, 240 clashes 0.30910 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 13 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 1 51 17 / 75 = 0.22667 0.00710 ## TweakPhiSegment 1 22 7 / 45 = 0.15556 0.00357 ## TweakPsiSubtree 0 50 33 / 96 = 0.34375 0.01057 ## TweakPsiSegment 0 48 26 / 91 = 0.28571 0.00734 ## TweakPsiPhiSubtree 11 44 24 / 102 = 0.23529 0.00988 ## TweakPsiPhiSegment 15 76 42 / 136 = 0.30882 0.01276 ## TweakHbondSubtree 4 70 30 / 159 = 0.18868 0.02133 ## TweakHbondSegment 5 61 44 / 203 = 0.21675 0.02286 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 14 / 41 = 0.34146 0.00327 ## OneRotamer 0 39 22 / 184 = 0.11957 0.01961 ## ClashingRotamer 1 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 95 = 0.03158 0.00324 ## ReduceBreak 4 16 11 / 324 = 0.03395 0.04143 ## CloseGap 0 8 2 / 220 = 0.00909 0.00416 ## HealGap 0 8 1 / 201 = 0.00498 0.00006 ## MoveGap 0 41 22 / 321 = 0.06854 0.04596 ## ReduceConstraint 0 10 4 / 219 = 0.01826 0.01517 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 874 = 0.01831 0.02004 ## InsertFragment 0 32 20 / 406 = 0.04926 0.05000 ## TwoFragment 0 5 4 / 275 = 0.01455 0.01837 ## CrossOver 2 14 3 / 124 = 0.02419 0.00013 ## CrossAndInsert 5 1 1 / 309 = 0.00324 0.05285 ## ReduceClash 0 14 7 / 246 = 0.02846 0.00857 # generation 51: best score out of 20: T0287.try5 205.28894 cost/residue, 240 clashes 0.31039 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 14 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 47 = 0.00000 0.00000 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 1 51 17 / 77 = 0.22078 0.00691 ## TweakPhiSegment 2 24 7 / 49 = 0.14286 0.00328 ## TweakPsiSubtree 0 53 34 / 99 = 0.34343 0.01219 ## TweakPsiSegment 0 49 28 / 94 = 0.29787 0.00738 ## TweakPsiPhiSubtree 11 48 28 / 107 = 0.26168 0.01349 ## TweakPsiPhiSegment 16 77 43 / 143 = 0.30070 0.01223 ## TweakHbondSubtree 4 72 31 / 164 = 0.18902 0.02140 ## TweakHbondSegment 5 64 45 / 209 = 0.21531 0.02294 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 14 / 44 = 0.31818 0.00305 ## OneRotamer 0 39 22 / 186 = 0.11828 0.01940 ## ClashingRotamer 1 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 106 = 0.02830 0.00291 ## ReduceBreak 4 16 11 / 327 = 0.03364 0.04105 ## CloseGap 0 8 2 / 223 = 0.00897 0.00411 ## HealGap 0 8 1 / 201 = 0.00498 0.00006 ## MoveGap 0 41 22 / 327 = 0.06728 0.04511 ## ReduceConstraint 0 10 4 / 220 = 0.01818 0.01510 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 887 = 0.01804 0.01974 ## InsertFragment 0 32 20 / 410 = 0.04878 0.04951 ## TwoFragment 0 5 4 / 282 = 0.01418 0.01791 ## CrossOver 2 14 3 / 124 = 0.02419 0.00013 ## CrossAndInsert 5 1 1 / 311 = 0.00322 0.05251 ## ReduceClash 0 14 7 / 251 = 0.02789 0.00840 # generation 52: best score out of 20: T0287.try5 205.09218 cost/residue, 241 clashes 0.31032 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 48 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 1 51 17 / 79 = 0.21519 0.00674 ## TweakPhiSegment 2 24 7 / 49 = 0.14286 0.00328 ## TweakPsiSubtree 0 56 37 / 105 = 0.35238 0.01160 ## TweakPsiSegment 0 52 30 / 99 = 0.30303 0.00764 ## TweakPsiPhiSubtree 13 52 29 / 112 = 0.25893 0.01393 ## TweakPsiPhiSegment 16 78 44 / 145 = 0.30345 0.01452 ## TweakHbondSubtree 5 75 32 / 168 = 0.19048 0.02090 ## TweakHbondSegment 5 64 46 / 214 = 0.21495 0.02266 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 14 / 46 = 0.30435 0.00292 ## OneRotamer 0 41 24 / 191 = 0.12565 0.02078 ## ClashingRotamer 1 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 110 = 0.02727 0.00280 ## ReduceBreak 4 16 11 / 331 = 0.03323 0.04056 ## CloseGap 0 8 2 / 225 = 0.00889 0.00407 ## HealGap 0 8 1 / 203 = 0.00493 0.00006 ## MoveGap 0 41 22 / 332 = 0.06627 0.04443 ## ReduceConstraint 0 10 4 / 225 = 0.01778 0.01476 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 905 = 0.01768 0.01935 ## InsertFragment 0 32 20 / 414 = 0.04831 0.04904 ## TwoFragment 0 5 4 / 284 = 0.01408 0.01779 ## CrossOver 2 14 3 / 125 = 0.02400 0.00013 ## CrossAndInsert 6 1 1 / 314 = 0.00318 0.05201 ## ReduceClash 0 14 7 / 259 = 0.02703 0.00814 # generation 53: best score out of 20: T0287.try5 205.00540 cost/residue, 239 clashes 0.31089 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 0 / 15 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 1 52 17 / 81 = 0.20988 0.00657 ## TweakPhiSegment 2 25 7 / 51 = 0.13725 0.00315 ## TweakPsiSubtree 0 59 38 / 114 = 0.33333 0.01069 ## TweakPsiSegment 0 53 31 / 103 = 0.30097 0.00735 ## TweakPsiPhiSubtree 16 54 29 / 118 = 0.24576 0.01322 ## TweakPsiPhiSegment 17 81 45 / 152 = 0.29605 0.01389 ## TweakHbondSubtree 5 76 33 / 173 = 0.19075 0.02030 ## TweakHbondSegment 6 66 48 / 217 = 0.22120 0.02301 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 14 / 48 = 0.29167 0.00280 ## OneRotamer 0 43 26 / 198 = 0.13131 0.02183 ## ClashingRotamer 1 2 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 112 = 0.02679 0.00275 ## ReduceBreak 4 16 11 / 338 = 0.03254 0.03972 ## CloseGap 0 8 2 / 227 = 0.00881 0.00403 ## HealGap 0 8 1 / 207 = 0.00483 0.00006 ## MoveGap 0 41 22 / 334 = 0.06587 0.04417 ## ReduceConstraint 0 10 4 / 226 = 0.01770 0.01470 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 914 = 0.01751 0.01916 ## InsertFragment 0 32 20 / 415 = 0.04819 0.04892 ## TwoFragment 0 5 4 / 289 = 0.01384 0.01748 ## CrossOver 2 14 3 / 127 = 0.02362 0.00013 ## CrossAndInsert 6 1 1 / 320 = 0.00313 0.05104 ## ReduceClash 0 14 7 / 267 = 0.02622 0.00790 # generation 54: best score out of 20: T0287.try5 204.74483 cost/residue, 242 clashes 0.31156 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 16 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 1 53 18 / 82 = 0.21951 0.00649 ## TweakPhiSegment 2 25 7 / 51 = 0.13725 0.00315 ## TweakPsiSubtree 0 61 40 / 117 = 0.34188 0.01049 ## TweakPsiSegment 0 56 31 / 108 = 0.28704 0.00701 ## TweakPsiPhiSubtree 17 56 31 / 121 = 0.25620 0.01614 ## TweakPsiPhiSegment 19 83 46 / 158 = 0.29114 0.01345 ## TweakHbondSubtree 5 76 33 / 176 = 0.18750 0.01996 ## TweakHbondSegment 6 68 48 / 227 = 0.21145 0.02199 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 15 / 49 = 0.30612 0.00281 ## OneRotamer 0 44 27 / 210 = 0.12857 0.02107 ## ClashingRotamer 1 2 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 116 = 0.02586 0.00266 ## ReduceBreak 4 16 11 / 340 = 0.03235 0.03948 ## CloseGap 0 8 2 / 231 = 0.00866 0.00396 ## HealGap 0 8 1 / 209 = 0.00478 0.00006 ## MoveGap 0 41 22 / 336 = 0.06548 0.04391 ## ReduceConstraint 0 10 4 / 228 = 0.01754 0.01457 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 26 16 / 926 = 0.01728 0.01891 ## InsertFragment 0 32 20 / 423 = 0.04728 0.04799 ## TwoFragment 0 5 4 / 294 = 0.01361 0.01718 ## CrossOver 2 14 3 / 128 = 0.02344 0.00013 ## CrossAndInsert 6 1 1 / 325 = 0.00308 0.05025 ## ReduceClash 0 14 7 / 272 = 0.02574 0.00775 # generation 55: best score out of 20: T0287.try5 204.58795 cost/residue, 260 clashes 0.31873 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 16 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 1 53 19 / 85 = 0.22353 0.00657 ## TweakPhiSegment 2 26 7 / 52 = 0.13462 0.00309 ## TweakPsiSubtree 0 65 45 / 127 = 0.35433 0.00983 ## TweakPsiSegment 0 57 32 / 110 = 0.29091 0.00696 ## TweakPsiPhiSubtree 19 59 34 / 135 = 0.25185 0.01540 ## TweakPsiPhiSegment 21 85 47 / 165 = 0.28485 0.01310 ## TweakHbondSubtree 5 77 34 / 180 = 0.18889 0.02013 ## TweakHbondSegment 6 69 49 / 233 = 0.21030 0.02162 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 15 / 51 = 0.29412 0.00270 ## OneRotamer 0 46 29 / 215 = 0.13488 0.02106 ## ClashingRotamer 1 2 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 120 = 0.02500 0.00257 ## ReduceBreak 4 16 11 / 347 = 0.03170 0.03869 ## CloseGap 0 8 2 / 234 = 0.00855 0.00391 ## HealGap 0 8 1 / 210 = 0.00476 0.00006 ## MoveGap 0 41 22 / 344 = 0.06395 0.04288 ## ReduceConstraint 0 10 4 / 228 = 0.01754 0.01457 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 27 17 / 933 = 0.01822 0.01931 ## InsertFragment 0 32 20 / 424 = 0.04717 0.04788 ## TwoFragment 0 5 4 / 295 = 0.01356 0.01712 ## CrossOver 2 14 3 / 130 = 0.02308 0.00013 ## CrossAndInsert 6 1 1 / 330 = 0.00303 0.04949 ## ReduceClash 0 14 7 / 275 = 0.02545 0.00767 # generation 56: best score out of 20: T0287.try5 203.39664 cost/residue, 276 clashes 0.28604 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 16 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 51 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 1 53 19 / 87 = 0.21839 0.00642 ## TweakPhiSegment 2 26 7 / 52 = 0.13462 0.00309 ## TweakPsiSubtree 0 69 47 / 134 = 0.35075 0.01021 ## TweakPsiSegment 0 58 32 / 112 = 0.28571 0.00683 ## TweakPsiPhiSubtree 19 63 39 / 146 = 0.26712 0.01472 ## TweakPsiPhiSegment 21 88 51 / 171 = 0.29825 0.01505 ## TweakHbondSubtree 5 77 34 / 183 = 0.18579 0.01980 ## TweakHbondSegment 6 70 49 / 240 = 0.20417 0.02098 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 19 16 / 52 = 0.30769 0.00293 ## OneRotamer 0 48 32 / 226 = 0.14159 0.02090 ## ClashingRotamer 1 2 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 0 7 3 / 122 = 0.02459 0.00252 ## ReduceBreak 4 16 11 / 356 = 0.03090 0.03771 ## CloseGap 0 8 2 / 238 = 0.00840 0.00385 ## HealGap 0 8 1 / 213 = 0.00469 0.00006 ## MoveGap 0 41 22 / 347 = 0.06340 0.04251 ## ReduceConstraint 0 10 4 / 230 = 0.01739 0.01444 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 28 18 / 940 = 0.01915 0.02060 ## InsertFragment 0 32 20 / 428 = 0.04673 0.04743 ## TwoFragment 0 5 4 / 297 = 0.01347 0.01701 ## CrossOver 2 14 3 / 134 = 0.02239 0.00012 ## CrossAndInsert 6 1 1 / 331 = 0.00302 0.04934 ## ReduceClash 0 14 7 / 282 = 0.02482 0.00748 # generation 57: best score out of 20: T0287.try5 203.26144 cost/residue, 281 clashes 0.28605 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 16 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 51 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 1 54 21 / 91 = 0.23077 0.00790 ## TweakPhiSegment 2 27 8 / 53 = 0.15094 0.00306 ## TweakPsiSubtree 0 73 50 / 139 = 0.35971 0.01110 ## TweakPsiSegment 0 60 36 / 117 = 0.30769 0.00693 ## TweakPsiPhiSubtree 20 67 40 / 151 = 0.26490 0.01447 ## TweakPsiPhiSegment 21 90 53 / 180 = 0.29444 0.01501 ## TweakHbondSubtree 5 78 35 / 184 = 0.19022 0.02068 ## TweakHbondSegment 6 71 53 / 248 = 0.21371 0.02236 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 19 16 / 53 = 0.30189 0.00287 ## OneRotamer 0 48 32 / 232 = 0.13793 0.02036 ## ClashingRotamer 1 2 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 0 8 3 / 126 = 0.02381 0.00244 ## ReduceBreak 4 16 11 / 362 = 0.03039 0.03708 ## CloseGap 0 8 2 / 241 = 0.00830 0.00380 ## HealGap 0 8 1 / 218 = 0.00459 0.00006 ## MoveGap 0 41 22 / 349 = 0.06304 0.04227 ## ReduceConstraint 0 10 4 / 233 = 0.01717 0.01426 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 28 18 / 961 = 0.01873 0.02015 ## InsertFragment 0 32 21 / 432 = 0.04861 0.04700 ## TwoFragment 0 5 4 / 298 = 0.01342 0.01695 ## CrossOver 2 14 3 / 134 = 0.02239 0.00012 ## CrossAndInsert 6 1 1 / 332 = 0.00301 0.04919 ## ReduceClash 0 14 7 / 286 = 0.02448 0.00737 # generation 58: best score out of 20: T0287.try5 203.18736 cost/residue, 280 clashes 0.28633 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 16 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 12 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 1 55 21 / 93 = 0.22581 0.00773 ## TweakPhiSegment 2 27 8 / 53 = 0.15094 0.00306 ## TweakPsiSubtree 0 74 53 / 147 = 0.36054 0.01094 ## TweakPsiSegment 0 62 38 / 120 = 0.31667 0.00738 ## TweakPsiPhiSubtree 22 72 46 / 162 = 0.28395 0.01409 ## TweakPsiPhiSegment 21 92 54 / 183 = 0.29508 0.01480 ## TweakHbondSubtree 5 79 36 / 187 = 0.19251 0.02055 ## TweakHbondSegment 6 73 56 / 257 = 0.21790 0.02182 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 21 18 / 56 = 0.32143 0.00295 ## OneRotamer 0 49 32 / 235 = 0.13617 0.02010 ## ClashingRotamer 1 2 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 0 8 3 / 129 = 0.02326 0.00239 ## ReduceBreak 4 16 11 / 370 = 0.02973 0.03628 ## CloseGap 0 8 2 / 241 = 0.00830 0.00380 ## HealGap 0 8 1 / 218 = 0.00459 0.00006 ## MoveGap 0 41 22 / 351 = 0.06268 0.04203 ## ReduceConstraint 0 10 4 / 235 = 0.01702 0.01413 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 28 19 / 978 = 0.01943 0.02038 ## InsertFragment 0 32 21 / 436 = 0.04817 0.04657 ## TwoFragment 0 5 4 / 301 = 0.01329 0.01678 ## CrossOver 2 14 3 / 136 = 0.02206 0.00012 ## CrossAndInsert 6 1 1 / 336 = 0.00298 0.04861 ## ReduceClash 0 14 7 / 292 = 0.02397 0.00722 # Closing gap before 32 # generation 59: best score out of 20: T0287.try5 203.08990 cost/residue, 281 clashes 0.28601 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 16 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 14 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 1 57 22 / 96 = 0.22917 0.00778 ## TweakPhiSegment 2 28 9 / 54 = 0.16667 0.00362 ## TweakPsiSubtree 0 76 54 / 152 = 0.35526 0.01058 ## TweakPsiSegment 0 63 39 / 124 = 0.31452 0.00732 ## TweakPsiPhiSubtree 23 73 47 / 165 = 0.28485 0.01461 ## TweakPsiPhiSegment 21 93 55 / 188 = 0.29255 0.01473 ## TweakHbondSubtree 5 81 38 / 194 = 0.19588 0.02020 ## TweakHbondSegment 6 75 56 / 263 = 0.21293 0.02133 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 23 20 / 59 = 0.33898 0.00289 ## OneRotamer 0 50 33 / 239 = 0.13808 0.02042 ## ClashingRotamer 1 2 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 0 8 3 / 131 = 0.02290 0.00235 ## ReduceBreak 4 16 11 / 374 = 0.02941 0.03589 ## CloseGap 0 8 2 / 243 = 0.00823 0.00377 ## HealGap 0 8 1 / 221 = 0.00452 0.00006 ## MoveGap 0 41 22 / 353 = 0.06232 0.04179 ## ReduceConstraint 0 10 4 / 238 = 0.01681 0.01396 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 28 19 / 995 = 0.01910 0.02003 ## InsertFragment 0 32 21 / 439 = 0.04784 0.04625 ## TwoFragment 0 5 4 / 307 = 0.01303 0.01645 ## CrossOver 2 14 3 / 137 = 0.02190 0.00012 ## CrossAndInsert 6 1 1 / 341 = 0.00293 0.04789 ## ReduceClash 0 14 7 / 299 = 0.02341 0.00705 # generation 60: best score out of 20: T0287.try5 202.96790 cost/residue, 279 clashes 0.28601 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 0 / 17 = 0.00000 0.00000 ## JiggleSubtree 0 2 0 / 14 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 0 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 2 57 22 / 98 = 0.22449 0.00762 ## TweakPhiSegment 2 30 9 / 56 = 0.16071 0.00349 ## TweakPsiSubtree 0 76 55 / 154 = 0.35714 0.01045 ## TweakPsiSegment 0 64 41 / 127 = 0.32283 0.00715 ## TweakPsiPhiSubtree 23 73 47 / 167 = 0.28144 0.01444 ## TweakPsiPhiSegment 21 96 58 / 194 = 0.29897 0.01469 ## TweakHbondSubtree 5 83 41 / 200 = 0.20500 0.02015 ## TweakHbondSegment 6 80 61 / 272 = 0.22426 0.02158 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 24 20 / 61 = 0.32787 0.00279 ## OneRotamer 0 52 35 / 244 = 0.14344 0.02069 ## ClashingRotamer 1 2 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 134 = 0.02985 0.00321 ## ReduceBreak 4 16 11 / 377 = 0.02918 0.03561 ## CloseGap 0 8 2 / 246 = 0.00813 0.00372 ## HealGap 0 8 1 / 223 = 0.00448 0.00006 ## MoveGap 0 41 22 / 354 = 0.06215 0.04167 ## ReduceConstraint 0 10 4 / 241 = 0.01660 0.01378 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 28 19 / 1014 = 0.01874 0.01965 ## InsertFragment 0 32 21 / 446 = 0.04709 0.04552 ## TwoFragment 0 5 4 / 315 = 0.01270 0.01604 ## CrossOver 2 14 3 / 139 = 0.02158 0.00012 ## CrossAndInsert 6 1 1 / 344 = 0.00291 0.04748 ## ReduceClash 0 14 7 / 302 = 0.02318 0.00698 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_341482041.pdb -s /var/tmp/to_scwrl_341482041.seq -o /var/tmp/from_scwrl_341482041.pdb > /var/tmp/scwrl_341482041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_341482041.pdb # T0287.try5-scwrl 198.01216 cost/residue 211 clashes 0.28600 breaks # iteration 3 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try5 at pool[8] 228.09874 cost/residue, 263 clashes 0.28657 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0287.try5 227.97440 cost/residue, 261 clashes 0.28657 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 1 / 1 = 1.00000 0.00003 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 1 = 1.00000 0.47632 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 2 / 2 = 1.00000 0.09291 ## ClashingRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 7 = 0.00000 0.00000 ## CloseGap 0 1 0 / 4 = 0.00000 0.00000 ## HealGap 0 0 0 / 7 = 0.00000 0.00000 ## MoveGap 0 2 1 / 4 = 0.25000 0.29082 ## ReduceConstraint 0 0 0 / 7 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 2 / 27 = 0.07407 1.11550 ## InsertFragment 0 2 0 / 5 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 5 = 0.00000 0.00000 ## CrossOver 0 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 6 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 7 = 0.00000 0.00000 # generation 2: best score out of 20: T0287.try5 220.91116 cost/residue, 270 clashes 0.21496 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 1 / 1 = 1.00000 0.00003 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 2 = 0.50000 0.23816 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 2 2 / 3 = 0.66667 0.06194 ## ClashingRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 2 1 / 5 = 0.20000 0.11080 ## ReduceBreak 0 3 1 / 12 = 0.08333 0.31129 ## CloseGap 0 1 0 / 10 = 0.00000 0.00000 ## HealGap 0 0 0 / 13 = 0.00000 0.00000 ## MoveGap 0 4 1 / 11 = 0.09091 0.10575 ## ReduceConstraint 0 2 0 / 15 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 3 / 51 = 0.05882 0.78168 ## InsertFragment 0 3 0 / 13 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 12 = 0.00000 0.00000 ## CrossOver 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 12 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 16 = 0.00000 0.00000 # generation 3: best score out of 20: T0287.try5 219.36441 cost/residue, 288 clashes 0.20888 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 2 = 0.50000 0.00002 ## TweakPsiSubtree 0 1 1 / 2 = 0.50000 0.00008 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 2 = 0.50000 0.23816 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 4 3 / 5 = 0.60000 0.14780 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 3 1 / 8 = 0.12500 0.06925 ## ReduceBreak 0 5 2 / 21 = 0.09524 0.26557 ## CloseGap 0 3 0 / 15 = 0.00000 0.00000 ## HealGap 0 1 0 / 19 = 0.00000 0.00000 ## MoveGap 0 4 2 / 15 = 0.13333 0.14137 ## ReduceConstraint 0 3 0 / 25 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 6 / 80 = 0.07500 0.79181 ## InsertFragment 0 3 0 / 16 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 18 = 0.00000 0.00000 ## CrossOver 1 0 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 0 2 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 24 = 0.00000 0.00000 # generation 4: best score out of 20: T0287.try5 217.07191 cost/residue, 322 clashes 0.19721 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 2 = 0.50000 0.00002 ## TweakPsiSubtree 0 1 2 / 4 = 0.50000 0.00195 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 3 1 / 6 = 0.16667 0.07939 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 1 / 2 = 0.50000 0.00036 ## OneRotamer 0 7 3 / 10 = 0.30000 0.07390 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 7 1 / 14 = 0.07143 0.03957 ## ReduceBreak 0 6 3 / 27 = 0.11111 0.23989 ## CloseGap 0 3 0 / 20 = 0.00000 0.00000 ## HealGap 0 1 0 / 28 = 0.00000 0.00000 ## MoveGap 0 5 4 / 20 = 0.20000 0.19580 ## ReduceConstraint 0 3 0 / 29 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 6 / 105 = 0.05714 0.60328 ## InsertFragment 0 4 0 / 20 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 20 = 0.00000 0.00000 ## CrossOver 1 1 1 / 13 = 0.07692 0.01531 ## CrossAndInsert 0 2 0 / 21 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 37 = 0.02703 0.06196 # generation 5: best score out of 20: T0287.try5 217.07191 cost/residue, 322 clashes 0.19721 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 2 = 0.50000 0.00002 ## TweakPsiSubtree 0 2 2 / 5 = 0.40000 0.00156 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 6 3 / 9 = 0.33333 0.08734 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 1 / 2 = 0.50000 0.00036 ## OneRotamer 0 7 3 / 12 = 0.25000 0.06158 ## ClashingRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 8 1 / 20 = 0.05000 0.02770 ## ReduceBreak 0 7 3 / 33 = 0.09091 0.19627 ## CloseGap 0 4 1 / 24 = 0.04167 0.08757 ## HealGap 0 1 0 / 33 = 0.00000 0.00000 ## MoveGap 0 6 4 / 26 = 0.15385 0.15061 ## ReduceConstraint 0 3 0 / 32 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 7 / 132 = 0.05303 0.48388 ## InsertFragment 0 4 0 / 25 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 24 = 0.00000 0.00000 ## CrossOver 1 2 2 / 18 = 0.11111 0.01468 ## CrossAndInsert 0 2 0 / 25 = 0.00000 0.00000 ## ReduceClash 0 5 1 / 44 = 0.02273 0.05210 # generation 6: best score out of 20: T0287.try5 217.07191 cost/residue, 322 clashes 0.19721 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 2 = 0.50000 0.00002 ## TweakPsiSubtree 0 3 3 / 6 = 0.50000 0.01762 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 1 1 / 2 = 0.50000 0.00433 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 6 3 / 11 = 0.27273 0.07146 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 1 / 2 = 0.50000 0.00036 ## OneRotamer 0 8 3 / 15 = 0.20000 0.04927 ## ClashingRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 1 9 1 / 22 = 0.04545 0.02518 ## ReduceBreak 0 8 3 / 44 = 0.06818 0.14720 ## CloseGap 0 4 1 / 27 = 0.03704 0.07784 ## HealGap 0 1 0 / 40 = 0.00000 0.00000 ## MoveGap 0 10 4 / 32 = 0.12500 0.12237 ## ReduceConstraint 0 4 0 / 37 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 160 = 0.05000 0.40069 ## InsertFragment 0 4 0 / 29 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 31 = 0.00000 0.00000 ## CrossOver 1 2 2 / 18 = 0.11111 0.01468 ## CrossAndInsert 0 2 0 / 29 = 0.00000 0.00000 ## ReduceClash 0 5 1 / 48 = 0.02083 0.04776 # generation 7: best score out of 20: T0287.try5 215.58945 cost/residue, 320 clashes 0.17209 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 2 = 0.50000 0.00002 ## TweakPsiSubtree 0 4 4 / 7 = 0.57143 0.01610 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 2 1 / 3 = 0.33333 0.00289 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 1 7 3 / 12 = 0.25000 0.06550 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 1 / 2 = 0.50000 0.00036 ## OneRotamer 0 9 3 / 17 = 0.17647 0.04347 ## ClashingRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 1 9 1 / 26 = 0.03846 0.02131 ## ReduceBreak 0 9 4 / 50 = 0.08000 0.13540 ## CloseGap 0 6 3 / 39 = 0.07692 0.14655 ## HealGap 0 1 0 / 47 = 0.00000 0.00000 ## MoveGap 0 12 4 / 37 = 0.10811 0.10584 ## ReduceConstraint 0 4 0 / 44 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 10 / 183 = 0.05464 0.35121 ## InsertFragment 0 4 0 / 35 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 36 = 0.00000 0.00000 ## CrossOver 1 3 3 / 20 = 0.15000 0.04226 ## CrossAndInsert 0 2 0 / 33 = 0.00000 0.00000 ## ReduceClash 0 5 1 / 53 = 0.01887 0.04325 # generation 8: best score out of 20: T0287.try5 214.73418 cost/residue, 325 clashes 0.16364 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 2 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 5 4 / 8 = 0.50000 0.01408 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 2 1 / 3 = 0.33333 0.00289 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 1 7 3 / 13 = 0.23077 0.06047 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 1 / 2 = 0.50000 0.00036 ## OneRotamer 0 10 3 / 19 = 0.15789 0.03889 ## ClashingRotamer 0 1 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 1 9 1 / 28 = 0.03571 0.01979 ## ReduceBreak 0 9 4 / 55 = 0.07273 0.12309 ## CloseGap 0 9 6 / 51 = 0.11765 0.22292 ## HealGap 0 1 0 / 55 = 0.00000 0.00000 ## MoveGap 0 15 7 / 44 = 0.15909 0.14842 ## ReduceConstraint 0 4 0 / 46 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 10 / 209 = 0.04785 0.30752 ## InsertFragment 0 5 0 / 41 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 43 = 0.00000 0.00000 ## CrossOver 1 4 3 / 25 = 0.12000 0.03381 ## CrossAndInsert 0 2 0 / 35 = 0.00000 0.00000 ## ReduceClash 0 5 1 / 59 = 0.01695 0.03886 # generation 9: best score out of 20: T0287.try5 214.73418 cost/residue, 325 clashes 0.16364 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 2 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 6 5 / 10 = 0.50000 0.01251 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00468 ## TweakPsiPhiSubtree 1 3 2 / 4 = 0.50000 0.08215 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 1 7 3 / 14 = 0.21429 0.05615 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 1 1 / 2 = 0.50000 0.00036 ## OneRotamer 0 12 3 / 22 = 0.13636 0.03359 ## ClashingRotamer 0 1 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 1 11 2 / 32 = 0.06250 0.02056 ## ReduceBreak 0 9 4 / 59 = 0.06780 0.11475 ## CloseGap 0 12 6 / 64 = 0.09375 0.17764 ## HealGap 0 1 0 / 58 = 0.00000 0.00000 ## MoveGap 0 16 7 / 50 = 0.14000 0.13061 ## ReduceConstraint 0 4 0 / 49 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 242 = 0.04959 0.26751 ## InsertFragment 0 5 0 / 45 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 51 = 0.00000 0.00000 ## CrossOver 1 4 3 / 28 = 0.10714 0.03019 ## CrossAndInsert 0 2 0 / 39 = 0.00000 0.00000 ## ReduceClash 0 5 1 / 63 = 0.01587 0.03639 # generation 10: best score out of 20: T0287.try5 214.67593 cost/residue, 308 clashes 0.17903 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 20 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 2 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 6 5 / 10 = 0.50000 0.01251 ## TweakPsiSegment 0 2 2 / 4 = 0.50000 0.00370 ## TweakPsiPhiSubtree 1 5 3 / 8 = 0.37500 0.04109 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 1 9 3 / 16 = 0.18750 0.04913 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 2 2 / 3 = 0.66667 0.00427 ## OneRotamer 0 13 3 / 25 = 0.12000 0.02956 ## ClashingRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 35 = 0.05714 0.01880 ## ReduceBreak 0 9 4 / 61 = 0.06557 0.11099 ## CloseGap 0 13 6 / 77 = 0.07792 0.14765 ## HealGap 0 1 0 / 62 = 0.00000 0.00000 ## MoveGap 0 17 8 / 61 = 0.13115 0.12007 ## ReduceConstraint 0 4 0 / 55 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 261 = 0.04598 0.24803 ## InsertFragment 0 6 0 / 51 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 54 = 0.00000 0.00000 ## CrossOver 1 5 3 / 31 = 0.09677 0.02727 ## CrossAndInsert 0 2 0 / 47 = 0.00000 0.00000 ## ReduceClash 0 5 1 / 69 = 0.01449 0.03322 # generation 11: best score out of 20: T0287.try5 214.19525 cost/residue, 324 clashes 0.12957 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 3 = 0.33333 0.00001 ## TweakPhiSegment 0 2 1 / 3 = 0.33333 0.00001 ## TweakPsiSubtree 0 7 5 / 11 = 0.45455 0.01137 ## TweakPsiSegment 0 4 2 / 7 = 0.28571 0.00211 ## TweakPsiPhiSubtree 1 6 4 / 9 = 0.44444 0.04241 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 1 11 3 / 18 = 0.16667 0.04367 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 2 / 4 = 0.50000 0.00320 ## OneRotamer 0 13 3 / 25 = 0.12000 0.02956 ## ClashingRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 39 = 0.05128 0.01687 ## ReduceBreak 0 9 4 / 66 = 0.06061 0.10258 ## CloseGap 0 15 6 / 88 = 0.06818 0.12919 ## HealGap 0 1 0 / 68 = 0.00000 0.00000 ## MoveGap 0 18 9 / 69 = 0.13043 0.11452 ## ReduceConstraint 0 4 0 / 56 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 290 = 0.04138 0.22323 ## InsertFragment 0 6 0 / 51 = 0.00000 0.00000 ## TwoFragment 0 1 0 / 58 = 0.00000 0.00000 ## CrossOver 2 5 3 / 35 = 0.08571 0.02415 ## CrossAndInsert 0 2 0 / 53 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 79 = 0.01266 0.02902 # generation 12: best score out of 20: T0287.try5 214.06573 cost/residue, 315 clashes 0.16545 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 2 / 4 = 0.50000 0.00425 ## TweakPhiSegment 0 2 2 / 4 = 0.50000 0.00001 ## TweakPsiSubtree 0 7 5 / 11 = 0.45455 0.01137 ## TweakPsiSegment 0 5 3 / 8 = 0.37500 0.09027 ## TweakPsiPhiSubtree 2 7 4 / 13 = 0.30769 0.02936 ## TweakPsiPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 1 / 3 = 0.33333 0.07652 ## TweakHbondSegment 1 12 4 / 19 = 0.21053 0.06377 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 4 3 / 7 = 0.42857 0.00231 ## OneRotamer 0 13 3 / 27 = 0.11111 0.02737 ## ClashingRotamer 0 1 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 41 = 0.04878 0.01605 ## ReduceBreak 0 9 4 / 72 = 0.05556 0.09403 ## CloseGap 0 17 6 / 99 = 0.06061 0.11484 ## HealGap 0 1 0 / 77 = 0.00000 0.00000 ## MoveGap 0 20 11 / 77 = 0.14286 0.11158 ## ReduceConstraint 0 4 0 / 59 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 309 = 0.03883 0.20950 ## InsertFragment 0 7 1 / 55 = 0.01818 0.00393 ## TwoFragment 0 1 0 / 63 = 0.00000 0.00000 ## CrossOver 2 5 3 / 37 = 0.08108 0.02285 ## CrossAndInsert 1 2 0 / 55 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 86 = 0.01163 0.02666 # generation 13: best score out of 20: T0287.try5 213.50438 cost/residue, 311 clashes 0.13135 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 3 / 6 = 0.50000 0.00284 ## TweakPhiSegment 0 3 2 / 6 = 0.33333 0.00001 ## TweakPsiSubtree 0 10 8 / 14 = 0.57143 0.00964 ## TweakPsiSegment 0 6 5 / 12 = 0.41667 0.06029 ## TweakPsiPhiSubtree 2 9 6 / 16 = 0.37500 0.02566 ## TweakPsiPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 3 3 / 6 = 0.50000 0.04196 ## TweakHbondSegment 1 13 4 / 21 = 0.19048 0.05770 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 4 / 9 = 0.44444 0.00205 ## OneRotamer 0 13 3 / 28 = 0.10714 0.02639 ## ClashingRotamer 0 1 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 44 = 0.04545 0.01495 ## ReduceBreak 0 9 4 / 78 = 0.05128 0.08680 ## CloseGap 0 18 6 / 107 = 0.05607 0.10625 ## HealGap 0 1 0 / 83 = 0.00000 0.00000 ## MoveGap 0 21 12 / 84 = 0.14286 0.11419 ## ReduceConstraint 0 4 0 / 62 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 330 = 0.03636 0.19617 ## InsertFragment 0 7 1 / 61 = 0.01639 0.00354 ## TwoFragment 0 1 0 / 66 = 0.00000 0.00000 ## CrossOver 2 5 3 / 40 = 0.07500 0.02113 ## CrossAndInsert 1 2 0 / 60 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 90 = 0.01111 0.02547 # generation 14: best score out of 20: T0287.try5 213.13591 cost/residue, 307 clashes 0.13375 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 3 / 7 = 0.42857 0.00243 ## TweakPhiSegment 0 3 3 / 7 = 0.42857 0.00001 ## TweakPsiSubtree 0 12 9 / 16 = 0.56250 0.00846 ## TweakPsiSegment 0 9 8 / 17 = 0.47059 0.04295 ## TweakPsiPhiSubtree 2 9 6 / 17 = 0.35294 0.02415 ## TweakPsiPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 4 3 / 10 = 0.30000 0.02518 ## TweakHbondSegment 1 14 5 / 24 = 0.20833 0.06584 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 4 / 10 = 0.40000 0.00184 ## OneRotamer 0 14 3 / 30 = 0.10000 0.02463 ## ClashingRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 44 = 0.04545 0.01495 ## ReduceBreak 0 9 4 / 84 = 0.04762 0.08060 ## CloseGap 0 19 6 / 111 = 0.05405 0.10242 ## HealGap 0 1 0 / 88 = 0.00000 0.00000 ## MoveGap 0 23 14 / 95 = 0.14737 0.10348 ## ReduceConstraint 0 4 0 / 68 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 15 12 / 351 = 0.03419 0.18444 ## InsertFragment 0 7 1 / 65 = 0.01538 0.00332 ## TwoFragment 0 1 0 / 69 = 0.00000 0.00000 ## CrossOver 2 5 3 / 46 = 0.06522 0.01838 ## CrossAndInsert 1 2 0 / 67 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 93 = 0.01075 0.02465 # generation 15: best score out of 20: T0287.try5 211.55423 cost/residue, 318 clashes 0.13135 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 4 / 8 = 0.50000 0.00213 ## TweakPhiSegment 0 3 4 / 8 = 0.50000 0.00627 ## TweakPsiSubtree 0 13 9 / 17 = 0.52941 0.00796 ## TweakPsiSegment 0 11 10 / 19 = 0.52632 0.04036 ## TweakPsiPhiSubtree 2 9 6 / 17 = 0.35294 0.02415 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 5 3 / 12 = 0.25000 0.02098 ## TweakHbondSegment 1 15 5 / 26 = 0.19231 0.06078 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 4 / 10 = 0.40000 0.00184 ## OneRotamer 0 14 3 / 30 = 0.10000 0.02463 ## ClashingRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 47 = 0.04255 0.01400 ## ReduceBreak 0 9 4 / 91 = 0.04396 0.07440 ## CloseGap 0 21 6 / 117 = 0.05128 0.09717 ## HealGap 0 1 0 / 91 = 0.00000 0.00000 ## MoveGap 0 24 15 / 110 = 0.13636 0.09054 ## ReduceConstraint 1 4 0 / 73 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 378 = 0.03704 0.17684 ## InsertFragment 0 7 1 / 71 = 0.01408 0.00304 ## TwoFragment 0 1 0 / 71 = 0.00000 0.00000 ## CrossOver 2 6 3 / 50 = 0.06000 0.01691 ## CrossAndInsert 1 2 0 / 69 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 93 = 0.01075 0.02465 # generation 16: best score out of 20: T0287.try5 211.53586 cost/residue, 318 clashes 0.13199 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 4 / 9 = 0.44444 0.00189 ## TweakPhiSegment 0 6 5 / 11 = 0.45455 0.00623 ## TweakPsiSubtree 0 16 12 / 20 = 0.60000 0.01190 ## TweakPsiSegment 0 14 11 / 23 = 0.47826 0.03374 ## TweakPsiPhiSubtree 2 9 6 / 20 = 0.30000 0.02053 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 3 / 16 = 0.18750 0.01573 ## TweakHbondSegment 1 18 7 / 32 = 0.21875 0.05022 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 4 / 10 = 0.40000 0.00184 ## OneRotamer 0 14 3 / 32 = 0.09375 0.02309 ## ClashingRotamer 0 1 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 48 = 0.04167 0.01371 ## ReduceBreak 0 9 4 / 95 = 0.04211 0.07126 ## CloseGap 0 23 6 / 126 = 0.04762 0.09023 ## HealGap 0 1 0 / 98 = 0.00000 0.00000 ## MoveGap 0 24 15 / 118 = 0.12712 0.08440 ## ReduceConstraint 1 4 0 / 79 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 396 = 0.03535 0.16880 ## InsertFragment 0 7 1 / 75 = 0.01333 0.00288 ## TwoFragment 0 1 0 / 75 = 0.00000 0.00000 ## CrossOver 2 6 3 / 55 = 0.05455 0.01537 ## CrossAndInsert 1 2 0 / 71 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 93 = 0.01075 0.02465 # generation 17: best score out of 20: T0287.try5 211.05319 cost/residue, 317 clashes 0.13348 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 11 = 0.36364 0.00155 ## TweakPhiSegment 0 6 5 / 11 = 0.45455 0.00623 ## TweakPsiSubtree 0 16 13 / 21 = 0.61905 0.01183 ## TweakPsiSegment 0 18 14 / 29 = 0.48276 0.02687 ## TweakPsiPhiSubtree 2 11 7 / 22 = 0.31818 0.02160 ## TweakPsiPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 6 3 / 16 = 0.18750 0.01573 ## TweakHbondSegment 1 21 7 / 36 = 0.19444 0.04464 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 4 / 11 = 0.36364 0.00167 ## OneRotamer 0 15 4 / 36 = 0.11111 0.02660 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 49 = 0.04082 0.01343 ## ReduceBreak 0 9 4 / 101 = 0.03960 0.06703 ## CloseGap 0 24 6 / 137 = 0.04380 0.08298 ## HealGap 0 1 0 / 102 = 0.00000 0.00000 ## MoveGap 0 24 15 / 129 = 0.11628 0.07720 ## ReduceConstraint 1 4 0 / 80 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 414 = 0.03382 0.16146 ## InsertFragment 0 7 1 / 77 = 0.01299 0.00280 ## TwoFragment 0 1 0 / 79 = 0.00000 0.00000 ## CrossOver 2 7 4 / 60 = 0.06667 0.02230 ## CrossAndInsert 1 2 0 / 75 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 98 = 0.01020 0.02339 # generation 18: best score out of 20: T0287.try5 210.48900 cost/residue, 315 clashes 0.13014 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 1 / 7 = 0.14286 0.00596 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 12 = 0.33333 0.00142 ## TweakPhiSegment 0 7 6 / 14 = 0.42857 0.00490 ## TweakPsiSubtree 0 16 14 / 22 = 0.63636 0.01130 ## TweakPsiSegment 0 23 18 / 35 = 0.51429 0.02241 ## TweakPsiPhiSubtree 2 13 7 / 26 = 0.26923 0.01828 ## TweakPsiPhiSegment 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 7 4 / 18 = 0.22222 0.07317 ## TweakHbondSegment 1 22 8 / 38 = 0.21053 0.04406 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 4 / 11 = 0.36364 0.00167 ## OneRotamer 0 15 4 / 38 = 0.10526 0.02520 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 55 = 0.03636 0.01196 ## ReduceBreak 0 9 4 / 112 = 0.03571 0.06045 ## CloseGap 0 25 6 / 142 = 0.04225 0.08006 ## HealGap 0 1 0 / 104 = 0.00000 0.00000 ## MoveGap 0 24 15 / 136 = 0.11029 0.07323 ## ReduceConstraint 1 4 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 437 = 0.03204 0.15296 ## InsertFragment 0 7 1 / 79 = 0.01266 0.00273 ## TwoFragment 0 1 0 / 82 = 0.00000 0.00000 ## CrossOver 2 8 4 / 61 = 0.06557 0.02193 ## CrossAndInsert 1 2 0 / 80 = 0.00000 0.00000 ## ReduceClash 0 6 1 / 102 = 0.00980 0.02248 # generation 19: best score out of 20: T0287.try5 210.03731 cost/residue, 312 clashes 0.13014 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 9 = 0.11111 0.00464 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 12 = 0.33333 0.00142 ## TweakPhiSegment 0 7 6 / 14 = 0.42857 0.00490 ## TweakPsiSubtree 0 17 15 / 23 = 0.65217 0.01109 ## TweakPsiSegment 0 26 18 / 39 = 0.46154 0.02011 ## TweakPsiPhiSubtree 2 13 7 / 26 = 0.26923 0.01828 ## TweakPsiPhiSegment 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 11 6 / 24 = 0.25000 0.06649 ## TweakHbondSegment 1 23 9 / 41 = 0.21951 0.04143 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 4 / 11 = 0.36364 0.00167 ## OneRotamer 0 16 5 / 42 = 0.11905 0.03355 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 55 = 0.03636 0.01196 ## ReduceBreak 0 10 5 / 122 = 0.04098 0.06093 ## CloseGap 0 27 6 / 152 = 0.03947 0.07479 ## HealGap 0 1 0 / 112 = 0.00000 0.00000 ## MoveGap 0 24 15 / 141 = 0.10638 0.07063 ## ReduceConstraint 1 4 0 / 89 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 454 = 0.03084 0.14724 ## InsertFragment 0 7 1 / 84 = 0.01190 0.00257 ## TwoFragment 0 1 0 / 87 = 0.00000 0.00000 ## CrossOver 2 8 4 / 66 = 0.06061 0.02027 ## CrossAndInsert 1 2 0 / 83 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 108 = 0.01852 0.02166 # generation 20: best score out of 20: T0287.try5 210.03731 cost/residue, 312 clashes 0.13014 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 10 = 0.20000 0.00939 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 4 / 12 = 0.33333 0.00142 ## TweakPhiSegment 0 8 6 / 16 = 0.37500 0.00429 ## TweakPsiSubtree 0 18 16 / 24 = 0.66667 0.01104 ## TweakPsiSegment 0 27 18 / 40 = 0.45000 0.01961 ## TweakPsiPhiSubtree 2 14 7 / 28 = 0.25000 0.01697 ## TweakPsiPhiSegment 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 16 7 / 32 = 0.21875 0.05234 ## TweakHbondSegment 1 23 9 / 43 = 0.20930 0.03951 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 4 / 11 = 0.36364 0.00167 ## OneRotamer 0 17 5 / 43 = 0.11628 0.03277 ## ClashingRotamer 0 1 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 56 = 0.03571 0.01175 ## ReduceBreak 0 10 5 / 133 = 0.03759 0.05589 ## CloseGap 0 28 6 / 159 = 0.03774 0.07150 ## HealGap 0 1 0 / 116 = 0.00000 0.00000 ## MoveGap 0 24 15 / 149 = 0.10067 0.06684 ## ReduceConstraint 1 4 0 / 93 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 480 = 0.02917 0.13926 ## InsertFragment 0 8 2 / 88 = 0.02273 0.00253 ## TwoFragment 0 1 0 / 93 = 0.00000 0.00000 ## CrossOver 2 8 4 / 69 = 0.05797 0.01939 ## CrossAndInsert 1 2 0 / 87 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 111 = 0.01802 0.02108 # generation 21: best score out of 20: T0287.try5 210.03729 cost/residue, 312 clashes 0.13014 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 11 = 0.18182 0.00853 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 10 4 / 14 = 0.28571 0.00122 ## TweakPhiSegment 0 9 6 / 18 = 0.33333 0.00381 ## TweakPsiSubtree 0 19 17 / 26 = 0.65385 0.01044 ## TweakPsiSegment 0 28 18 / 41 = 0.43902 0.01913 ## TweakPsiPhiSubtree 2 16 7 / 31 = 0.22581 0.01533 ## TweakPsiPhiSegment 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 20 9 / 37 = 0.24324 0.04628 ## TweakHbondSegment 1 24 9 / 45 = 0.20000 0.03775 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 4 / 11 = 0.36364 0.00167 ## OneRotamer 0 17 5 / 46 = 0.10870 0.03064 ## ClashingRotamer 0 1 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 57 = 0.03509 0.01154 ## ReduceBreak 0 10 5 / 138 = 0.03623 0.05387 ## CloseGap 0 28 6 / 165 = 0.03636 0.06890 ## HealGap 0 1 0 / 121 = 0.00000 0.00000 ## MoveGap 0 24 15 / 158 = 0.09494 0.06303 ## ReduceConstraint 1 4 0 / 97 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 17 14 / 507 = 0.02761 0.13184 ## InsertFragment 0 9 2 / 91 = 0.02198 0.00245 ## TwoFragment 0 1 0 / 98 = 0.00000 0.00000 ## CrossOver 3 10 5 / 72 = 0.06944 0.01858 ## CrossAndInsert 2 2 0 / 91 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 113 = 0.01770 0.02071 # generation 22: best score out of 20: T0287.try5 209.59033 cost/residue, 302 clashes 0.13014 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 13 = 0.15385 0.00722 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 11 4 / 15 = 0.26667 0.00114 ## TweakPhiSegment 0 11 7 / 20 = 0.35000 0.00820 ## TweakPsiSubtree 0 20 18 / 29 = 0.62069 0.00958 ## TweakPsiSegment 0 28 18 / 42 = 0.42857 0.01867 ## TweakPsiPhiSubtree 2 17 9 / 33 = 0.27273 0.01569 ## TweakPsiPhiSegment 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 20 9 / 39 = 0.23077 0.04390 ## TweakHbondSegment 1 25 10 / 52 = 0.19231 0.03701 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 4 / 11 = 0.36364 0.00167 ## OneRotamer 0 18 6 / 48 = 0.12500 0.03867 ## ClashingRotamer 0 1 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 1 12 2 / 59 = 0.03390 0.01115 ## ReduceBreak 0 10 5 / 142 = 0.03521 0.05235 ## CloseGap 0 32 6 / 174 = 0.03448 0.06534 ## HealGap 0 1 0 / 130 = 0.00000 0.00000 ## MoveGap 0 24 15 / 164 = 0.09146 0.06073 ## ReduceConstraint 1 4 0 / 100 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 18 15 / 528 = 0.02841 0.12676 ## InsertFragment 0 9 2 / 97 = 0.02062 0.00230 ## TwoFragment 0 1 0 / 100 = 0.00000 0.00000 ## CrossOver 3 10 5 / 76 = 0.06579 0.01760 ## CrossAndInsert 2 2 0 / 93 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 116 = 0.01724 0.02017 # generation 23: best score out of 20: T0287.try5 209.36864 cost/residue, 304 clashes 0.16375 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 17 = 0.11765 0.00552 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 11 4 / 15 = 0.26667 0.00114 ## TweakPhiSegment 0 11 7 / 21 = 0.33333 0.00781 ## TweakPsiSubtree 0 21 18 / 30 = 0.60000 0.00926 ## TweakPsiSegment 0 29 19 / 46 = 0.41304 0.01705 ## TweakPsiPhiSubtree 2 18 9 / 35 = 0.25714 0.01479 ## TweakPsiPhiSegment 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 21 10 / 43 = 0.23256 0.04082 ## TweakHbondSegment 1 25 10 / 55 = 0.18182 0.03499 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 5 / 13 = 0.38462 0.00175 ## OneRotamer 0 20 7 / 56 = 0.12500 0.03687 ## ClashingRotamer 0 1 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 60 = 0.05000 0.01257 ## ReduceBreak 0 10 5 / 148 = 0.03378 0.05023 ## CloseGap 0 33 6 / 179 = 0.03352 0.06351 ## HealGap 0 1 0 / 130 = 0.00000 0.00000 ## MoveGap 0 24 15 / 172 = 0.08721 0.05790 ## ReduceConstraint 1 5 1 / 104 = 0.00962 0.00643 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 16 / 547 = 0.02925 0.12237 ## InsertFragment 0 9 2 / 103 = 0.01942 0.00217 ## TwoFragment 0 1 0 / 102 = 0.00000 0.00000 ## CrossOver 4 10 5 / 81 = 0.06173 0.01652 ## CrossAndInsert 3 2 0 / 99 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 120 = 0.01667 0.01950 # generation 24: best score out of 20: T0287.try5 209.27878 cost/residue, 298 clashes 0.13014 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 2 / 17 = 0.11765 0.00552 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 13 7 / 25 = 0.28000 0.00656 ## TweakPsiSubtree 0 21 18 / 30 = 0.60000 0.00926 ## TweakPsiSegment 0 33 21 / 51 = 0.41176 0.01602 ## TweakPsiPhiSubtree 2 20 9 / 38 = 0.23684 0.01363 ## TweakPsiPhiSegment 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 22 12 / 46 = 0.26087 0.04235 ## TweakHbondSegment 1 25 10 / 56 = 0.17857 0.03436 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 6 / 15 = 0.40000 0.00182 ## OneRotamer 0 21 8 / 64 = 0.12500 0.03713 ## ClashingRotamer 0 1 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 60 = 0.05000 0.01257 ## ReduceBreak 0 10 5 / 152 = 0.03289 0.04891 ## CloseGap 0 34 6 / 187 = 0.03209 0.06080 ## HealGap 0 1 0 / 134 = 0.00000 0.00000 ## MoveGap 0 24 15 / 180 = 0.08333 0.05533 ## ReduceConstraint 1 5 1 / 113 = 0.00885 0.00592 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 16 / 566 = 0.02827 0.11827 ## InsertFragment 0 9 2 / 107 = 0.01869 0.00208 ## TwoFragment 0 1 0 / 102 = 0.00000 0.00000 ## CrossOver 4 10 5 / 85 = 0.05882 0.01574 ## CrossAndInsert 3 2 0 / 104 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 124 = 0.01613 0.01887 # generation 25: best score out of 20: T0287.try5 209.06174 cost/residue, 297 clashes 0.13056 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 20 = 0.15000 0.00730 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 13 7 / 25 = 0.28000 0.00656 ## TweakPsiSubtree 0 23 20 / 32 = 0.62500 0.00872 ## TweakPsiSegment 0 33 21 / 51 = 0.41176 0.01602 ## TweakPsiPhiSubtree 2 20 9 / 39 = 0.23077 0.01328 ## TweakPsiPhiSegment 0 2 1 / 6 = 0.16667 0.01671 ## TweakHbondSubtree 0 26 14 / 56 = 0.25000 0.03484 ## TweakHbondSegment 1 28 12 / 62 = 0.19355 0.03480 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 6 / 15 = 0.40000 0.00182 ## OneRotamer 0 22 8 / 68 = 0.11765 0.03495 ## ClashingRotamer 0 1 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 62 = 0.04839 0.01217 ## ReduceBreak 0 10 5 / 157 = 0.03185 0.04735 ## CloseGap 0 35 6 / 190 = 0.03158 0.05984 ## HealGap 0 1 0 / 141 = 0.00000 0.00000 ## MoveGap 0 24 15 / 185 = 0.08108 0.05383 ## ReduceConstraint 1 6 2 / 119 = 0.01681 0.00899 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 16 / 584 = 0.02740 0.11462 ## InsertFragment 0 9 2 / 110 = 0.01818 0.00203 ## TwoFragment 0 1 0 / 105 = 0.00000 0.00000 ## CrossOver 4 11 5 / 92 = 0.05435 0.01454 ## CrossAndInsert 3 2 0 / 107 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 130 = 0.01538 0.01800 # Closing gap before 96 without wiggling. # generation 26: best score out of 20: T0287.try5 208.08455 cost/residue, 300 clashes 0.10812 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 3 / 21 = 0.14286 0.00695 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 14 8 / 28 = 0.28571 0.00586 ## TweakPsiSubtree 0 23 21 / 33 = 0.63636 0.00854 ## TweakPsiSegment 1 33 21 / 51 = 0.41176 0.01602 ## TweakPsiPhiSubtree 2 20 9 / 39 = 0.23077 0.01328 ## TweakPsiPhiSegment 0 2 1 / 9 = 0.11111 0.01114 ## TweakHbondSubtree 0 28 15 / 62 = 0.24194 0.03170 ## TweakHbondSegment 2 29 12 / 63 = 0.19048 0.03424 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 8 / 17 = 0.47059 0.00204 ## OneRotamer 0 24 9 / 71 = 0.12676 0.04361 ## ClashingRotamer 0 1 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 65 = 0.04615 0.01161 ## ReduceBreak 0 10 5 / 165 = 0.03030 0.04505 ## CloseGap 0 36 6 / 200 = 0.03000 0.05684 ## HealGap 0 1 0 / 146 = 0.00000 0.00000 ## MoveGap 0 25 16 / 193 = 0.08290 0.05238 ## ReduceConstraint 1 6 2 / 126 = 0.01587 0.00849 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 598 = 0.02843 0.11416 ## InsertFragment 0 9 2 / 113 = 0.01770 0.00197 ## TwoFragment 0 2 1 / 109 = 0.00917 0.00321 ## CrossOver 4 11 5 / 94 = 0.05319 0.01423 ## CrossAndInsert 3 2 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 6 2 / 139 = 0.01439 0.01683 # generation 27: best score out of 20: T0287.try5 207.82390 cost/residue, 301 clashes 0.10961 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 3 / 23 = 0.13043 0.00635 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 15 8 / 30 = 0.26667 0.00547 ## TweakPsiSubtree 0 24 22 / 34 = 0.64706 0.00858 ## TweakPsiSegment 1 33 22 / 52 = 0.42308 0.01577 ## TweakPsiPhiSubtree 2 20 9 / 39 = 0.23077 0.01328 ## TweakPsiPhiSegment 0 5 4 / 14 = 0.28571 0.01720 ## TweakHbondSubtree 0 29 17 / 65 = 0.26154 0.03583 ## TweakHbondSegment 2 30 13 / 66 = 0.19697 0.03664 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 12 9 / 19 = 0.47368 0.00225 ## OneRotamer 0 26 9 / 75 = 0.12000 0.04129 ## ClashingRotamer 0 1 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 69 = 0.04348 0.01093 ## ReduceBreak 0 10 5 / 176 = 0.02841 0.04224 ## CloseGap 0 37 6 / 204 = 0.02941 0.05573 ## HealGap 0 1 0 / 149 = 0.00000 0.00000 ## MoveGap 0 25 16 / 200 = 0.08000 0.05054 ## ReduceConstraint 1 6 2 / 131 = 0.01527 0.00816 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 617 = 0.02755 0.11065 ## InsertFragment 0 9 2 / 118 = 0.01695 0.00189 ## TwoFragment 0 2 1 / 113 = 0.00885 0.00309 ## CrossOver 4 11 5 / 95 = 0.05263 0.01408 ## CrossAndInsert 3 2 0 / 113 = 0.00000 0.00000 ## ReduceClash 0 8 3 / 147 = 0.02041 0.01611 # generation 28: best score out of 20: T0287.try5 207.42503 cost/residue, 289 clashes 0.16429 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 3 / 26 = 0.11538 0.00562 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 15 8 / 30 = 0.26667 0.00547 ## TweakPsiSubtree 0 25 24 / 37 = 0.64865 0.00789 ## TweakPsiSegment 1 33 22 / 52 = 0.42308 0.01577 ## TweakPsiPhiSubtree 2 21 9 / 40 = 0.22500 0.01295 ## TweakPsiPhiSegment 0 5 4 / 14 = 0.28571 0.01720 ## TweakHbondSubtree 0 31 19 / 69 = 0.27536 0.03541 ## TweakHbondSegment 2 31 13 / 69 = 0.18841 0.03504 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 9 / 22 = 0.40909 0.00195 ## OneRotamer 0 29 12 / 82 = 0.14634 0.04498 ## ClashingRotamer 0 1 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 72 = 0.04167 0.01048 ## ReduceBreak 0 10 5 / 182 = 0.02747 0.04084 ## CloseGap 0 39 6 / 207 = 0.02899 0.05492 ## HealGap 0 1 0 / 154 = 0.00000 0.00000 ## MoveGap 0 26 17 / 204 = 0.08333 0.05032 ## ReduceConstraint 1 6 2 / 141 = 0.01418 0.00758 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 639 = 0.02660 0.10684 ## InsertFragment 0 9 2 / 123 = 0.01626 0.00181 ## TwoFragment 0 3 2 / 117 = 0.01709 0.01342 ## CrossOver 4 11 5 / 96 = 0.05208 0.01394 ## CrossAndInsert 3 2 0 / 117 = 0.00000 0.00000 ## ReduceClash 0 8 3 / 149 = 0.02013 0.01589 # generation 29: best score out of 20: T0287.try5 207.21120 cost/residue, 281 clashes 0.16456 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 3 / 26 = 0.11538 0.00562 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 15 9 / 32 = 0.28125 0.00703 ## TweakPsiSubtree 0 27 26 / 39 = 0.66667 0.01112 ## TweakPsiSegment 1 33 22 / 54 = 0.40741 0.01518 ## TweakPsiPhiSubtree 2 22 9 / 42 = 0.21429 0.01233 ## TweakPsiPhiSegment 0 7 5 / 17 = 0.29412 0.01469 ## TweakHbondSubtree 0 32 20 / 71 = 0.28169 0.03742 ## TweakHbondSegment 2 31 13 / 72 = 0.18056 0.03358 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 10 / 25 = 0.40000 0.00177 ## OneRotamer 0 33 13 / 92 = 0.14130 0.04250 ## ClashingRotamer 0 1 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 72 = 0.04167 0.01048 ## ReduceBreak 0 10 5 / 189 = 0.02646 0.03933 ## CloseGap 0 39 6 / 213 = 0.02817 0.05337 ## HealGap 0 1 0 / 155 = 0.00000 0.00000 ## MoveGap 0 28 18 / 209 = 0.08612 0.04958 ## ReduceConstraint 1 6 2 / 151 = 0.01325 0.00708 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 652 = 0.02607 0.10471 ## InsertFragment 0 9 2 / 129 = 0.01550 0.00173 ## TwoFragment 0 3 2 / 126 = 0.01587 0.01246 ## CrossOver 4 11 5 / 97 = 0.05155 0.01379 ## CrossAndInsert 3 2 0 / 122 = 0.00000 0.00000 ## ReduceClash 0 8 4 / 155 = 0.02581 0.01698 # generation 30: best score out of 20: T0287.try5 206.82315 cost/residue, 277 clashes 0.16456 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 29 = 0.10345 0.00503 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 16 9 / 34 = 0.26471 0.00661 ## TweakPsiSubtree 1 29 29 / 44 = 0.65909 0.01270 ## TweakPsiSegment 1 35 23 / 57 = 0.40351 0.01439 ## TweakPsiPhiSubtree 2 23 10 / 44 = 0.22727 0.01195 ## TweakPsiPhiSegment 2 9 6 / 19 = 0.31579 0.01558 ## TweakHbondSubtree 0 32 20 / 76 = 0.26316 0.03496 ## TweakHbondSegment 2 33 13 / 75 = 0.17333 0.03224 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 11 / 26 = 0.42308 0.00182 ## OneRotamer 0 37 17 / 101 = 0.16832 0.05826 ## ClashingRotamer 0 1 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 74 = 0.04054 0.01020 ## ReduceBreak 0 10 5 / 192 = 0.02604 0.03872 ## CloseGap 0 39 6 / 219 = 0.02740 0.05191 ## HealGap 0 1 0 / 159 = 0.00000 0.00000 ## MoveGap 0 28 18 / 219 = 0.08219 0.04732 ## ReduceConstraint 1 6 2 / 154 = 0.01299 0.00694 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 672 = 0.02530 0.10159 ## InsertFragment 0 10 3 / 130 = 0.02308 0.00333 ## TwoFragment 0 3 2 / 133 = 0.01504 0.01180 ## CrossOver 4 11 5 / 101 = 0.04950 0.01325 ## CrossAndInsert 3 2 0 / 123 = 0.00000 0.00000 ## ReduceClash 0 8 4 / 157 = 0.02548 0.01677 # generation 31: best score out of 20: T0287.try5 206.61591 cost/residue, 269 clashes 0.16429 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 30 = 0.10000 0.00487 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 18 9 / 37 = 0.24324 0.00608 ## TweakPsiSubtree 1 29 30 / 47 = 0.63830 0.01194 ## TweakPsiSegment 1 36 24 / 58 = 0.41379 0.01415 ## TweakPsiPhiSubtree 2 23 10 / 44 = 0.22727 0.01195 ## TweakPsiPhiSegment 3 11 9 / 24 = 0.37500 0.01510 ## TweakHbondSubtree 0 35 23 / 81 = 0.28395 0.03535 ## TweakHbondSegment 3 35 15 / 78 = 0.19231 0.03246 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 11 / 26 = 0.42308 0.00182 ## OneRotamer 0 41 18 / 111 = 0.16216 0.05504 ## ClashingRotamer 0 1 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 76 = 0.03947 0.00993 ## ReduceBreak 0 10 5 / 197 = 0.02538 0.03773 ## CloseGap 0 39 6 / 225 = 0.02667 0.05053 ## HealGap 0 1 0 / 160 = 0.00000 0.00000 ## MoveGap 0 28 18 / 224 = 0.08036 0.04626 ## ReduceConstraint 1 6 2 / 155 = 0.01290 0.00690 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 693 = 0.02453 0.09851 ## InsertFragment 0 10 4 / 135 = 0.02963 0.00360 ## TwoFragment 0 4 2 / 143 = 0.01399 0.01098 ## CrossOver 4 11 5 / 103 = 0.04854 0.01299 ## CrossAndInsert 3 2 0 / 127 = 0.00000 0.00000 ## ReduceClash 0 8 4 / 162 = 0.02469 0.01625 # Closing gap before 6 # generation 32: best score out of 20: T0287.try5 206.40523 cost/residue, 284 clashes 0.16649 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 30 = 0.10000 0.00487 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 18 9 / 37 = 0.24324 0.00608 ## TweakPsiSubtree 1 31 32 / 51 = 0.62745 0.01701 ## TweakPsiSegment 1 36 24 / 61 = 0.39344 0.01345 ## TweakPsiPhiSubtree 3 23 11 / 48 = 0.22917 0.01104 ## TweakPsiPhiSegment 3 13 9 / 29 = 0.31034 0.01250 ## TweakHbondSubtree 0 38 26 / 87 = 0.29885 0.03795 ## TweakHbondSegment 4 36 15 / 81 = 0.18519 0.03126 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 12 / 27 = 0.44444 0.00301 ## OneRotamer 0 42 19 / 121 = 0.15702 0.05081 ## ClashingRotamer 0 1 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 76 = 0.03947 0.00993 ## ReduceBreak 0 10 5 / 202 = 0.02475 0.03680 ## CloseGap 0 40 7 / 233 = 0.03004 0.04992 ## HealGap 0 1 0 / 162 = 0.00000 0.00000 ## MoveGap 0 29 19 / 230 = 0.08261 0.04642 ## ReduceConstraint 1 6 2 / 159 = 0.01258 0.00672 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 712 = 0.02388 0.09589 ## InsertFragment 0 10 4 / 139 = 0.02878 0.00349 ## TwoFragment 0 4 2 / 144 = 0.01389 0.01090 ## CrossOver 4 12 5 / 107 = 0.04673 0.01250 ## CrossAndInsert 3 2 0 / 131 = 0.00000 0.00000 ## ReduceClash 0 8 4 / 167 = 0.02395 0.01576 # generation 33: best score out of 20: T0287.try5 206.39946 cost/residue, 284 clashes 0.16649 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 30 = 0.10000 0.00487 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 16 = 0.25000 0.00107 ## TweakPhiSegment 0 18 9 / 37 = 0.24324 0.00608 ## TweakPsiSubtree 2 33 33 / 54 = 0.61111 0.01616 ## TweakPsiSegment 1 39 28 / 65 = 0.43077 0.01286 ## TweakPsiPhiSubtree 3 25 14 / 52 = 0.26923 0.01362 ## TweakPsiPhiSegment 3 13 9 / 30 = 0.30000 0.01208 ## TweakHbondSubtree 0 39 26 / 92 = 0.28261 0.03589 ## TweakHbondSegment 4 38 16 / 86 = 0.18605 0.02962 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 16 13 / 28 = 0.46429 0.00311 ## OneRotamer 0 46 21 / 134 = 0.15672 0.04823 ## ClashingRotamer 0 1 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 77 = 0.03896 0.00980 ## ReduceBreak 0 10 5 / 206 = 0.02427 0.03609 ## CloseGap 0 40 7 / 238 = 0.02941 0.04887 ## HealGap 0 1 0 / 164 = 0.00000 0.00000 ## MoveGap 0 29 19 / 234 = 0.08120 0.04563 ## ReduceConstraint 1 6 2 / 164 = 0.01220 0.00652 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 726 = 0.02342 0.09404 ## InsertFragment 0 10 4 / 143 = 0.02797 0.00340 ## TwoFragment 0 4 2 / 151 = 0.01325 0.01040 ## CrossOver 4 12 5 / 108 = 0.04630 0.01239 ## CrossAndInsert 3 2 0 / 135 = 0.00000 0.00000 ## ReduceClash 0 8 4 / 171 = 0.02339 0.01539 # generation 34: best score out of 20: T0287.try5 205.94601 cost/residue, 278 clashes 0.16649 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 31 = 0.09677 0.00471 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 17 = 0.23529 0.00100 ## TweakPhiSegment 0 19 9 / 38 = 0.23684 0.00592 ## TweakPsiSubtree 2 34 34 / 60 = 0.56667 0.01465 ## TweakPsiSegment 1 40 30 / 69 = 0.43478 0.01246 ## TweakPsiPhiSubtree 3 26 14 / 57 = 0.24561 0.01242 ## TweakPsiPhiSegment 3 13 9 / 31 = 0.29032 0.01169 ## TweakHbondSubtree 0 43 29 / 96 = 0.30208 0.03550 ## TweakHbondSegment 4 39 16 / 90 = 0.17778 0.02830 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 16 13 / 28 = 0.46429 0.00311 ## OneRotamer 0 49 23 / 145 = 0.15862 0.04820 ## ClashingRotamer 0 1 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 79 = 0.03797 0.00955 ## ReduceBreak 0 10 5 / 211 = 0.02370 0.03523 ## CloseGap 0 40 7 / 245 = 0.02857 0.04748 ## HealGap 0 1 0 / 167 = 0.00000 0.00000 ## MoveGap 0 30 20 / 237 = 0.08439 0.04540 ## ReduceConstraint 1 6 2 / 168 = 0.01190 0.00636 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 744 = 0.02285 0.09176 ## InsertFragment 0 10 4 / 146 = 0.02740 0.00333 ## TwoFragment 0 4 2 / 157 = 0.01274 0.01000 ## CrossOver 4 12 5 / 109 = 0.04587 0.01227 ## CrossAndInsert 3 2 0 / 136 = 0.00000 0.00000 ## ReduceClash 0 8 4 / 175 = 0.02286 0.01504 # generation 35: best score out of 20: T0287.try5 205.76614 cost/residue, 276 clashes 0.16649 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 33 = 0.09091 0.00442 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 17 = 0.23529 0.00100 ## TweakPhiSegment 0 20 9 / 40 = 0.22500 0.00562 ## TweakPsiSubtree 2 35 35 / 64 = 0.54688 0.01374 ## TweakPsiSegment 1 41 30 / 71 = 0.42254 0.01211 ## TweakPsiPhiSubtree 3 27 14 / 60 = 0.23333 0.01180 ## TweakPsiPhiSegment 3 13 9 / 33 = 0.27273 0.01098 ## TweakHbondSubtree 0 45 30 / 99 = 0.30303 0.03464 ## TweakHbondSegment 4 40 18 / 93 = 0.19355 0.02911 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 17 14 / 30 = 0.46667 0.00460 ## OneRotamer 0 53 25 / 162 = 0.15432 0.04443 ## ClashingRotamer 0 1 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 81 = 0.03704 0.00931 ## ReduceBreak 0 10 5 / 217 = 0.02304 0.03426 ## CloseGap 0 41 7 / 250 = 0.02800 0.04653 ## HealGap 0 1 0 / 169 = 0.00000 0.00000 ## MoveGap 0 31 21 / 244 = 0.08607 0.04558 ## ReduceConstraint 1 6 2 / 170 = 0.01176 0.00629 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 757 = 0.02246 0.09019 ## InsertFragment 0 10 4 / 150 = 0.02667 0.00324 ## TwoFragment 0 4 2 / 161 = 0.01242 0.00975 ## CrossOver 4 12 5 / 112 = 0.04464 0.01194 ## CrossAndInsert 3 2 0 / 140 = 0.00000 0.00000 ## ReduceClash 0 8 4 / 182 = 0.02198 0.01446 # generation 36: best score out of 20: T0287.try5 205.53694 cost/residue, 279 clashes 0.16786 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 3 / 36 = 0.08333 0.00406 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 17 = 0.23529 0.00100 ## TweakPhiSegment 0 21 9 / 41 = 0.21951 0.00548 ## TweakPsiSubtree 2 36 36 / 68 = 0.52941 0.01295 ## TweakPsiSegment 1 41 30 / 72 = 0.41667 0.01194 ## TweakPsiPhiSubtree 3 31 16 / 64 = 0.25000 0.01566 ## TweakPsiPhiSegment 3 13 9 / 35 = 0.25714 0.01036 ## TweakHbondSubtree 0 48 35 / 110 = 0.31818 0.03408 ## TweakHbondSegment 4 41 19 / 97 = 0.19588 0.02923 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 15 / 33 = 0.45455 0.00503 ## OneRotamer 0 54 25 / 168 = 0.14881 0.04285 ## ClashingRotamer 0 1 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 86 = 0.03488 0.00877 ## ReduceBreak 0 10 5 / 219 = 0.02283 0.03394 ## CloseGap 0 43 7 / 256 = 0.02734 0.04544 ## HealGap 0 1 0 / 172 = 0.00000 0.00000 ## MoveGap 0 31 21 / 249 = 0.08434 0.04466 ## ReduceConstraint 1 6 2 / 175 = 0.01143 0.00611 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 772 = 0.02202 0.08843 ## InsertFragment 0 10 4 / 152 = 0.02632 0.00319 ## TwoFragment 0 4 2 / 167 = 0.01198 0.00940 ## CrossOver 4 12 5 / 113 = 0.04425 0.01184 ## CrossAndInsert 3 3 1 / 143 = 0.00699 0.00125 ## ReduceClash 0 8 4 / 187 = 0.02139 0.01408 # generation 37: best score out of 20: T0287.try5 205.51109 cost/residue, 273 clashes 0.16715 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 3 / 39 = 0.07692 0.00374 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 18 = 0.22222 0.00095 ## TweakPhiSegment 0 21 9 / 41 = 0.21951 0.00548 ## TweakPsiSubtree 2 36 37 / 70 = 0.52857 0.01261 ## TweakPsiSegment 1 41 30 / 73 = 0.41096 0.01178 ## TweakPsiPhiSubtree 3 32 16 / 69 = 0.23188 0.01453 ## TweakPsiPhiSegment 3 15 11 / 41 = 0.26829 0.00946 ## TweakHbondSubtree 0 50 35 / 117 = 0.29915 0.03204 ## TweakHbondSegment 4 43 20 / 101 = 0.19802 0.02808 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 18 15 / 36 = 0.41667 0.00461 ## OneRotamer 0 58 26 / 181 = 0.14365 0.04092 ## ClashingRotamer 0 1 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 90 = 0.03333 0.00838 ## ReduceBreak 0 10 5 / 224 = 0.02232 0.03319 ## CloseGap 0 44 7 / 261 = 0.02682 0.04457 ## HealGap 0 1 0 / 174 = 0.00000 0.00000 ## MoveGap 0 31 21 / 255 = 0.08235 0.04361 ## ReduceConstraint 1 6 2 / 176 = 0.01136 0.00608 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 784 = 0.02168 0.08708 ## InsertFragment 0 10 4 / 157 = 0.02548 0.00309 ## TwoFragment 0 4 2 / 173 = 0.01156 0.00907 ## CrossOver 4 12 5 / 117 = 0.04274 0.01143 ## CrossAndInsert 3 3 1 / 145 = 0.00690 0.00124 ## ReduceClash 0 8 4 / 189 = 0.02116 0.01393 # Closing gap before 22 # generation 38: best score out of 20: T0287.try5 205.40802 cost/residue, 279 clashes 0.16912 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 3 / 40 = 0.07500 0.00365 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 18 = 0.22222 0.00095 ## TweakPhiSegment 0 22 10 / 44 = 0.22727 0.00511 ## TweakPsiSubtree 2 38 38 / 77 = 0.49351 0.01148 ## TweakPsiSegment 1 42 31 / 76 = 0.40789 0.01145 ## TweakPsiPhiSubtree 3 35 18 / 74 = 0.24324 0.01582 ## TweakPsiPhiSegment 3 17 11 / 43 = 0.25581 0.00902 ## TweakHbondSubtree 0 53 36 / 122 = 0.29508 0.03082 ## TweakHbondSegment 4 43 20 / 105 = 0.19048 0.02701 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 19 15 / 39 = 0.38462 0.00425 ## OneRotamer 0 61 26 / 193 = 0.13472 0.03837 ## ClashingRotamer 0 1 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 93 = 0.03226 0.00811 ## ReduceBreak 0 10 5 / 225 = 0.02222 0.03304 ## CloseGap 0 44 7 / 267 = 0.02622 0.04356 ## HealGap 0 1 0 / 176 = 0.00000 0.00000 ## MoveGap 0 31 21 / 259 = 0.08108 0.04294 ## ReduceConstraint 1 6 2 / 178 = 0.01124 0.00601 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 806 = 0.02109 0.08470 ## InsertFragment 0 10 4 / 159 = 0.02516 0.00305 ## TwoFragment 0 4 2 / 178 = 0.01124 0.00882 ## CrossOver 4 12 5 / 120 = 0.04167 0.01115 ## CrossAndInsert 3 3 1 / 145 = 0.00690 0.00124 ## ReduceClash 0 8 4 / 190 = 0.02105 0.01386 # generation 39: best score out of 20: T0287.try5 205.31880 cost/residue, 266 clashes 0.16376 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 43 = 0.06977 0.00340 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 37 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 19 = 0.21053 0.00090 ## TweakPhiSegment 0 22 10 / 44 = 0.22727 0.00511 ## TweakPsiSubtree 2 38 38 / 78 = 0.48718 0.01133 ## TweakPsiSegment 1 43 32 / 77 = 0.41558 0.01131 ## TweakPsiPhiSubtree 3 38 18 / 80 = 0.22500 0.01464 ## TweakPsiPhiSegment 3 17 11 / 44 = 0.25000 0.00882 ## TweakHbondSubtree 0 55 37 / 130 = 0.28462 0.02953 ## TweakHbondSegment 4 46 22 / 112 = 0.19643 0.02566 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 19 15 / 39 = 0.38462 0.00425 ## OneRotamer 0 63 28 / 200 = 0.14000 0.03784 ## ClashingRotamer 0 1 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 96 = 0.03125 0.00786 ## ReduceBreak 0 10 5 / 228 = 0.02193 0.03260 ## CloseGap 0 45 7 / 271 = 0.02583 0.04292 ## HealGap 0 1 0 / 179 = 0.00000 0.00000 ## MoveGap 0 32 22 / 270 = 0.08148 0.04231 ## ReduceConstraint 1 6 2 / 182 = 0.01099 0.00588 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 823 = 0.02066 0.08295 ## InsertFragment 0 10 4 / 164 = 0.02439 0.00296 ## TwoFragment 0 4 2 / 182 = 0.01099 0.00863 ## CrossOver 4 12 5 / 122 = 0.04098 0.01097 ## CrossAndInsert 3 3 1 / 146 = 0.00685 0.00123 ## ReduceClash 0 8 4 / 194 = 0.02062 0.01357 # generation 40: best score out of 20: T0287.try5 204.57291 cost/residue, 262 clashes 0.16970 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 43 = 0.06977 0.00340 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 19 = 0.21053 0.00090 ## TweakPhiSegment 0 23 10 / 45 = 0.22222 0.00500 ## TweakPsiSubtree 2 39 40 / 81 = 0.49383 0.01108 ## TweakPsiSegment 1 44 33 / 79 = 0.41772 0.01111 ## TweakPsiPhiSubtree 5 40 18 / 82 = 0.21951 0.01428 ## TweakPsiPhiSegment 3 17 11 / 46 = 0.23913 0.00843 ## TweakHbondSubtree 0 59 38 / 137 = 0.27737 0.02806 ## TweakHbondSegment 4 48 22 / 117 = 0.18803 0.02456 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 20 15 / 40 = 0.37500 0.00415 ## OneRotamer 0 64 30 / 208 = 0.14423 0.04067 ## ClashingRotamer 0 1 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 98 = 0.03061 0.00770 ## ReduceBreak 0 10 5 / 231 = 0.02165 0.03218 ## CloseGap 0 45 7 / 275 = 0.02545 0.04230 ## HealGap 0 1 0 / 184 = 0.00000 0.00000 ## MoveGap 0 32 22 / 280 = 0.07857 0.04080 ## ReduceConstraint 1 6 2 / 186 = 0.01075 0.00575 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 837 = 0.02031 0.08157 ## InsertFragment 0 10 4 / 168 = 0.02381 0.00289 ## TwoFragment 0 4 2 / 187 = 0.01070 0.00840 ## CrossOver 4 12 5 / 126 = 0.03968 0.01062 ## CrossAndInsert 3 3 1 / 151 = 0.00662 0.00119 ## ReduceClash 0 8 4 / 196 = 0.02041 0.01343 # Closing gap before 65 without wiggling. # generation 41: best score out of 20: T0287.try5 204.37408 cost/residue, 252 clashes 0.17104 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 14 3 / 43 = 0.06977 0.00340 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 19 = 0.21053 0.00090 ## TweakPhiSegment 0 23 10 / 45 = 0.22222 0.00500 ## TweakPsiSubtree 2 40 42 / 84 = 0.50000 0.01308 ## TweakPsiSegment 1 44 33 / 80 = 0.41250 0.01097 ## TweakPsiPhiSubtree 6 42 18 / 86 = 0.20930 0.01362 ## TweakPsiPhiSegment 4 19 11 / 49 = 0.22449 0.00792 ## TweakHbondSubtree 0 61 40 / 144 = 0.27778 0.02743 ## TweakHbondSegment 4 50 22 / 123 = 0.17886 0.02337 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 20 16 / 41 = 0.39024 0.00412 ## OneRotamer 0 69 32 / 222 = 0.14414 0.03867 ## ClashingRotamer 0 1 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 98 = 0.03061 0.00770 ## ReduceBreak 0 10 5 / 233 = 0.02146 0.03190 ## CloseGap 0 46 7 / 280 = 0.02500 0.04154 ## HealGap 0 2 0 / 185 = 0.00000 0.00000 ## MoveGap 0 32 22 / 291 = 0.07560 0.03925 ## ReduceConstraint 1 6 2 / 188 = 0.01064 0.00569 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 858 = 0.01981 0.07957 ## InsertFragment 0 11 4 / 171 = 0.02339 0.00284 ## TwoFragment 0 4 2 / 195 = 0.01026 0.00805 ## CrossOver 4 12 5 / 127 = 0.03937 0.01053 ## CrossAndInsert 3 3 1 / 153 = 0.00654 0.00117 ## ReduceClash 0 8 4 / 200 = 0.02000 0.01316 # generation 42: best score out of 20: T0287.try5 204.35449 cost/residue, 253 clashes 0.17083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 3 / 45 = 0.06667 0.00324 ## JiggleSubtree 0 1 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 0 12 4 / 19 = 0.21053 0.00090 ## TweakPhiSegment 0 24 10 / 46 = 0.21739 0.00489 ## TweakPsiSubtree 3 40 44 / 89 = 0.49438 0.01273 ## TweakPsiSegment 1 44 33 / 81 = 0.40741 0.01084 ## TweakPsiPhiSubtree 6 44 19 / 90 = 0.21111 0.01323 ## TweakPsiPhiSegment 4 20 11 / 51 = 0.21569 0.00761 ## TweakHbondSubtree 0 65 43 / 155 = 0.27742 0.02679 ## TweakHbondSegment 4 53 24 / 127 = 0.18898 0.02422 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 20 16 / 44 = 0.36364 0.00384 ## OneRotamer 0 69 32 / 229 = 0.13974 0.03748 ## ClashingRotamer 0 1 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 100 = 0.03000 0.00754 ## ReduceBreak 0 10 5 / 236 = 0.02119 0.03150 ## CloseGap 0 46 7 / 285 = 0.02456 0.04081 ## HealGap 0 2 0 / 187 = 0.00000 0.00000 ## MoveGap 0 32 22 / 297 = 0.07407 0.03846 ## ReduceConstraint 1 6 2 / 190 = 0.01053 0.00563 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 873 = 0.01947 0.07820 ## InsertFragment 0 11 4 / 176 = 0.02273 0.00276 ## TwoFragment 0 4 2 / 201 = 0.00995 0.00781 ## CrossOver 4 12 5 / 127 = 0.03937 0.01053 ## CrossAndInsert 3 5 2 / 159 = 0.01258 0.00355 ## ReduceClash 0 8 4 / 203 = 0.01970 0.01297 # generation 43: best score out of 20: T0287.try5 204.35449 cost/residue, 253 clashes 0.17083 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 3 / 47 = 0.06383 0.00311 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 13 4 / 20 = 0.20000 0.00085 ## TweakPhiSegment 0 25 10 / 47 = 0.21277 0.00478 ## TweakPsiSubtree 3 41 46 / 95 = 0.48421 0.01231 ## TweakPsiSegment 1 44 33 / 81 = 0.40741 0.01084 ## TweakPsiPhiSubtree 6 44 19 / 91 = 0.20879 0.01308 ## TweakPsiPhiSegment 4 20 11 / 53 = 0.20755 0.00732 ## TweakHbondSubtree 0 67 44 / 161 = 0.27329 0.02655 ## TweakHbondSegment 4 54 24 / 129 = 0.18605 0.02384 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 24 18 / 50 = 0.36000 0.00343 ## OneRotamer 0 73 34 / 240 = 0.14167 0.03591 ## ClashingRotamer 0 1 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 100 = 0.03000 0.00754 ## ReduceBreak 0 10 5 / 241 = 0.02075 0.03085 ## CloseGap 0 46 7 / 290 = 0.02414 0.04011 ## HealGap 0 2 0 / 190 = 0.00000 0.00000 ## MoveGap 0 32 22 / 303 = 0.07261 0.03770 ## ReduceConstraint 1 6 2 / 196 = 0.01020 0.00546 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 885 = 0.01921 0.07714 ## InsertFragment 0 11 4 / 182 = 0.02198 0.00267 ## TwoFragment 0 4 2 / 207 = 0.00966 0.00758 ## CrossOver 4 12 5 / 127 = 0.03937 0.01053 ## CrossAndInsert 3 5 2 / 163 = 0.01227 0.00346 ## ReduceClash 0 8 4 / 205 = 0.01951 0.01284 # generation 44: best score out of 20: T0287.try5 204.20245 cost/residue, 251 clashes 0.17131 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 3 / 48 = 0.06250 0.00304 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 1 / 10 = 0.10000 0.00088 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 21 = 0.19048 0.00081 ## TweakPhiSegment 0 26 10 / 49 = 0.20408 0.00459 ## TweakPsiSubtree 3 45 50 / 103 = 0.48544 0.01199 ## TweakPsiSegment 1 46 34 / 86 = 0.39535 0.01028 ## TweakPsiPhiSubtree 6 45 20 / 96 = 0.20833 0.01245 ## TweakPsiPhiSegment 4 21 12 / 55 = 0.21818 0.00728 ## TweakHbondSubtree 0 69 47 / 171 = 0.27485 0.02534 ## TweakHbondSegment 4 56 26 / 132 = 0.19697 0.02550 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 25 18 / 51 = 0.35294 0.00337 ## OneRotamer 0 74 36 / 247 = 0.14575 0.03547 ## ClashingRotamer 0 1 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 102 = 0.02941 0.00740 ## ReduceBreak 0 10 5 / 249 = 0.02008 0.02985 ## CloseGap 0 46 7 / 293 = 0.02389 0.03970 ## HealGap 0 2 0 / 194 = 0.00000 0.00000 ## MoveGap 0 32 22 / 310 = 0.07097 0.03685 ## ReduceConstraint 1 6 2 / 201 = 0.00995 0.00532 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 897 = 0.01895 0.07611 ## InsertFragment 0 11 4 / 183 = 0.02186 0.00265 ## TwoFragment 0 4 2 / 211 = 0.00948 0.00744 ## CrossOver 5 12 5 / 129 = 0.03876 0.01037 ## CrossAndInsert 3 5 2 / 166 = 0.01205 0.00340 ## ReduceClash 0 8 4 / 208 = 0.01923 0.01266 # generation 45: best score out of 20: T0287.try5 203.89072 cost/residue, 271 clashes 0.17269 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 3 / 48 = 0.06250 0.00304 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 1 / 10 = 0.10000 0.00088 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 1 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 22 = 0.18182 0.00077 ## TweakPhiSegment 0 27 11 / 51 = 0.21569 0.00441 ## TweakPsiSubtree 3 47 50 / 109 = 0.45872 0.01133 ## TweakPsiSegment 1 47 36 / 88 = 0.40909 0.01009 ## TweakPsiPhiSubtree 6 48 20 / 100 = 0.20000 0.01195 ## TweakPsiPhiSegment 4 21 12 / 56 = 0.21429 0.00715 ## TweakHbondSubtree 0 71 48 / 180 = 0.26667 0.02601 ## TweakHbondSegment 4 58 28 / 139 = 0.20144 0.02452 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 26 19 / 52 = 0.36538 0.00344 ## OneRotamer 0 77 39 / 257 = 0.15175 0.03443 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 103 = 0.02913 0.00732 ## ReduceBreak 0 10 5 / 252 = 0.01984 0.02950 ## CloseGap 0 46 7 / 298 = 0.02349 0.03903 ## HealGap 0 2 0 / 197 = 0.00000 0.00000 ## MoveGap 0 32 22 / 316 = 0.06962 0.03615 ## ReduceConstraint 1 6 2 / 205 = 0.00976 0.00522 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 907 = 0.01874 0.07527 ## InsertFragment 0 11 4 / 188 = 0.02128 0.00258 ## TwoFragment 0 4 2 / 214 = 0.00935 0.00734 ## CrossOver 6 12 5 / 133 = 0.03759 0.01006 ## CrossAndInsert 3 5 2 / 173 = 0.01156 0.00326 ## ReduceClash 0 8 4 / 211 = 0.01896 0.01248 # generation 46: best score out of 20: T0287.try5 203.62498 cost/residue, 270 clashes 0.17230 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 50 = 0.08000 0.00292 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 1 / 12 = 0.08333 0.00073 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 1 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 22 = 0.18182 0.00077 ## TweakPhiSegment 0 27 11 / 53 = 0.20755 0.00424 ## TweakPsiSubtree 3 51 54 / 116 = 0.46552 0.01302 ## TweakPsiSegment 1 49 37 / 91 = 0.40659 0.00996 ## TweakPsiPhiSubtree 7 49 21 / 104 = 0.20192 0.01195 ## TweakPsiPhiSegment 4 22 13 / 61 = 0.21311 0.00958 ## TweakHbondSubtree 0 73 49 / 184 = 0.26630 0.02562 ## TweakHbondSegment 4 58 28 / 143 = 0.19580 0.02384 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 27 19 / 56 = 0.33929 0.00319 ## OneRotamer 0 79 40 / 267 = 0.14981 0.03350 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 103 = 0.02913 0.00732 ## ReduceBreak 0 10 5 / 255 = 0.01961 0.02915 ## CloseGap 0 47 7 / 303 = 0.02310 0.03839 ## HealGap 0 2 0 / 201 = 0.00000 0.00000 ## MoveGap 0 32 22 / 320 = 0.06875 0.03570 ## ReduceConstraint 1 6 2 / 210 = 0.00952 0.00509 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 919 = 0.01850 0.07429 ## InsertFragment 0 11 4 / 190 = 0.02105 0.00256 ## TwoFragment 0 4 2 / 215 = 0.00930 0.00730 ## CrossOver 6 12 5 / 135 = 0.03704 0.00991 ## CrossAndInsert 4 5 2 / 181 = 0.01105 0.00312 ## ReduceClash 0 8 4 / 216 = 0.01852 0.01219 # Closing gap before 83 # generation 47: best score out of 20: T0287.try5 203.19008 cost/residue, 264 clashes 0.17230 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 50 = 0.08000 0.00292 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 1 / 12 = 0.08333 0.00073 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 1 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 27 11 / 54 = 0.20370 0.00416 ## TweakPsiSubtree 3 53 56 / 123 = 0.45528 0.01229 ## TweakPsiSegment 1 52 40 / 98 = 0.40816 0.00951 ## TweakPsiPhiSubtree 7 51 22 / 107 = 0.20561 0.01167 ## TweakPsiPhiSegment 4 23 14 / 66 = 0.21212 0.00896 ## TweakHbondSubtree 0 75 52 / 194 = 0.26804 0.02620 ## TweakHbondSegment 4 59 28 / 149 = 0.18792 0.02288 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 28 19 / 57 = 0.33333 0.00314 ## OneRotamer 0 81 41 / 272 = 0.15074 0.03449 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 104 = 0.02885 0.00725 ## ReduceBreak 0 10 5 / 258 = 0.01938 0.02881 ## CloseGap 0 48 7 / 309 = 0.02265 0.03764 ## HealGap 0 2 0 / 202 = 0.00000 0.00000 ## MoveGap 0 32 22 / 326 = 0.06748 0.03504 ## ReduceConstraint 1 6 2 / 213 = 0.00939 0.00502 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 935 = 0.01818 0.07302 ## InsertFragment 0 11 4 / 195 = 0.02051 0.00249 ## TwoFragment 0 4 2 / 216 = 0.00926 0.00727 ## CrossOver 6 12 5 / 136 = 0.03676 0.00984 ## CrossAndInsert 4 5 2 / 184 = 0.01087 0.00307 ## ReduceClash 0 8 4 / 221 = 0.01810 0.01191 # generation 48: best score out of 20: T0287.try5 203.19008 cost/residue, 264 clashes 0.17230 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 50 = 0.08000 0.00292 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 1 / 12 = 0.08333 0.00073 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 28 11 / 57 = 0.19298 0.00394 ## TweakPsiSubtree 3 56 57 / 129 = 0.44186 0.01173 ## TweakPsiSegment 1 53 42 / 101 = 0.41584 0.00929 ## TweakPsiPhiSubtree 8 52 23 / 109 = 0.21101 0.01219 ## TweakPsiPhiSegment 6 23 15 / 70 = 0.21429 0.00876 ## TweakHbondSubtree 0 79 52 / 206 = 0.25243 0.02468 ## TweakHbondSegment 4 61 31 / 158 = 0.19620 0.02253 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 29 20 / 58 = 0.34483 0.00328 ## OneRotamer 0 83 42 / 277 = 0.15162 0.03398 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 105 = 0.02857 0.00719 ## ReduceBreak 0 10 5 / 263 = 0.01901 0.02827 ## CloseGap 0 48 7 / 312 = 0.02244 0.03728 ## HealGap 0 2 0 / 206 = 0.00000 0.00000 ## MoveGap 0 32 22 / 332 = 0.06627 0.03441 ## ReduceConstraint 1 6 2 / 217 = 0.00922 0.00493 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 945 = 0.01799 0.07224 ## InsertFragment 0 11 4 / 200 = 0.02000 0.00243 ## TwoFragment 0 4 2 / 224 = 0.00893 0.00701 ## CrossOver 6 12 5 / 137 = 0.03650 0.00977 ## CrossAndInsert 4 5 2 / 187 = 0.01070 0.00302 ## ReduceClash 0 8 4 / 223 = 0.01794 0.01181 # generation 49: best score out of 20: T0287.try5 203.07492 cost/residue, 262 clashes 0.17324 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 51 = 0.07843 0.00286 ## JiggleSubtree 0 1 0 / 8 = 0.00000 0.00000 ## JiggleSegment 0 1 1 / 14 = 0.07143 0.00063 ## OptSubtree 0 1 1 / 43 = 0.02326 0.00342 ## OptSegment 1 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 28 11 / 57 = 0.19298 0.00394 ## TweakPsiSubtree 3 60 58 / 134 = 0.43284 0.01240 ## TweakPsiSegment 1 56 43 / 104 = 0.41346 0.00904 ## TweakPsiPhiSubtree 8 54 24 / 114 = 0.21053 0.01201 ## TweakPsiPhiSegment 8 23 17 / 73 = 0.23288 0.00844 ## TweakHbondSubtree 0 81 56 / 215 = 0.26047 0.02486 ## TweakHbondSegment 4 61 31 / 162 = 0.19136 0.02198 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 31 20 / 60 = 0.33333 0.00317 ## OneRotamer 0 84 43 / 285 = 0.15088 0.03315 ## ClashingRotamer 0 1 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 107 = 0.02804 0.00705 ## ReduceBreak 0 10 5 / 264 = 0.01894 0.02816 ## CloseGap 0 48 7 / 316 = 0.02215 0.03681 ## HealGap 0 2 0 / 208 = 0.00000 0.00000 ## MoveGap 0 32 22 / 342 = 0.06433 0.03340 ## ReduceConstraint 1 6 2 / 220 = 0.00909 0.00486 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 963 = 0.01765 0.07089 ## InsertFragment 0 12 4 / 204 = 0.01961 0.00238 ## TwoFragment 0 4 2 / 226 = 0.00885 0.00695 ## CrossOver 6 12 5 / 137 = 0.03650 0.00977 ## CrossAndInsert 4 5 2 / 191 = 0.01047 0.00295 ## ReduceClash 0 8 4 / 226 = 0.01770 0.01165 # generation 50: best score out of 20: T0287.try5 203.00266 cost/residue, 260 clashes 0.17558 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 51 = 0.07843 0.00286 ## JiggleSubtree 0 2 1 / 9 = 0.11111 0.00803 ## JiggleSegment 0 1 1 / 16 = 0.06250 0.00055 ## OptSubtree 0 1 1 / 53 = 0.01887 0.00278 ## OptSegment 1 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 28 11 / 57 = 0.19298 0.00394 ## TweakPsiSubtree 3 62 59 / 138 = 0.42754 0.01206 ## TweakPsiSegment 1 59 44 / 107 = 0.41121 0.00879 ## TweakPsiPhiSubtree 9 55 25 / 118 = 0.21186 0.01161 ## TweakPsiPhiSegment 9 24 18 / 75 = 0.24000 0.00856 ## TweakHbondSubtree 0 83 57 / 224 = 0.25446 0.02411 ## TweakHbondSegment 4 62 32 / 167 = 0.19162 0.02138 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 31 20 / 60 = 0.33333 0.00317 ## OneRotamer 0 85 44 / 292 = 0.15068 0.03236 ## ClashingRotamer 0 1 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 107 = 0.02804 0.00705 ## ReduceBreak 0 10 5 / 265 = 0.01887 0.02805 ## CloseGap 0 49 7 / 319 = 0.02194 0.03646 ## HealGap 0 2 0 / 212 = 0.00000 0.00000 ## MoveGap 0 32 22 / 347 = 0.06340 0.03292 ## ReduceConstraint 1 6 2 / 225 = 0.00889 0.00475 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 980 = 0.01735 0.06966 ## InsertFragment 0 13 5 / 209 = 0.02392 0.00265 ## TwoFragment 0 4 2 / 230 = 0.00870 0.00683 ## CrossOver 7 12 5 / 139 = 0.03597 0.00962 ## CrossAndInsert 4 5 2 / 196 = 0.01020 0.00288 ## ReduceClash 0 8 4 / 228 = 0.01754 0.01155 # generation 51: best score out of 20: T0287.try5 202.80862 cost/residue, 254 clashes 0.17259 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 53 = 0.07547 0.00276 ## JiggleSubtree 0 2 1 / 19 = 0.05263 0.00380 ## JiggleSegment 0 2 1 / 17 = 0.05882 0.00052 ## OptSubtree 0 1 1 / 60 = 0.01667 0.00245 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 30 12 / 60 = 0.20000 0.00375 ## TweakPsiSubtree 3 64 61 / 143 = 0.42657 0.01167 ## TweakPsiSegment 1 59 44 / 109 = 0.40367 0.00863 ## TweakPsiPhiSubtree 9 56 25 / 120 = 0.20833 0.01142 ## TweakPsiPhiSegment 9 26 21 / 80 = 0.26250 0.00879 ## TweakHbondSubtree 0 85 59 / 231 = 0.25541 0.02384 ## TweakHbondSegment 5 63 33 / 171 = 0.19298 0.02094 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 33 21 / 63 = 0.33333 0.00316 ## OneRotamer 0 88 47 / 302 = 0.15563 0.03230 ## ClashingRotamer 0 1 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 107 = 0.02804 0.00705 ## ReduceBreak 0 10 5 / 268 = 0.01866 0.02774 ## CloseGap 0 49 7 / 321 = 0.02181 0.03624 ## HealGap 0 2 0 / 215 = 0.00000 0.00000 ## MoveGap 0 32 22 / 352 = 0.06250 0.03245 ## ReduceConstraint 1 6 2 / 226 = 0.00885 0.00473 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 990 = 0.01717 0.06896 ## InsertFragment 0 13 5 / 211 = 0.02370 0.00263 ## TwoFragment 0 4 2 / 234 = 0.00855 0.00671 ## CrossOver 7 12 5 / 142 = 0.03521 0.00942 ## CrossAndInsert 4 5 2 / 197 = 0.01015 0.00286 ## ReduceClash 0 8 4 / 232 = 0.01724 0.01135 # generation 52: best score out of 20: T0287.try5 202.72438 cost/residue, 267 clashes 0.16599 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 53 = 0.07547 0.00276 ## JiggleSubtree 0 3 1 / 20 = 0.05000 0.00361 ## JiggleSegment 0 2 1 / 17 = 0.05882 0.00052 ## OptSubtree 0 1 2 / 63 = 0.03175 0.00234 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 30 12 / 60 = 0.20000 0.00375 ## TweakPsiSubtree 3 65 61 / 145 = 0.42069 0.01151 ## TweakPsiSegment 1 60 45 / 110 = 0.40909 0.00856 ## TweakPsiPhiSubtree 9 60 28 / 128 = 0.21875 0.01111 ## TweakPsiPhiSegment 10 26 21 / 84 = 0.25000 0.00837 ## TweakHbondSubtree 1 89 63 / 240 = 0.26250 0.02439 ## TweakHbondSegment 5 64 34 / 175 = 0.19429 0.02059 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 34 21 / 68 = 0.30882 0.00293 ## OneRotamer 0 89 48 / 307 = 0.15635 0.03186 ## ClashingRotamer 0 1 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 110 = 0.02727 0.00686 ## ReduceBreak 0 11 6 / 272 = 0.02206 0.02823 ## CloseGap 0 50 7 / 324 = 0.02160 0.03590 ## HealGap 0 2 0 / 218 = 0.00000 0.00000 ## MoveGap 0 32 22 / 355 = 0.06197 0.03218 ## ReduceConstraint 1 6 2 / 233 = 0.00858 0.00459 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 1002 = 0.01697 0.06813 ## InsertFragment 0 13 5 / 216 = 0.02315 0.00257 ## TwoFragment 0 4 2 / 241 = 0.00830 0.00651 ## CrossOver 7 12 5 / 145 = 0.03448 0.00923 ## CrossAndInsert 4 5 2 / 201 = 0.00995 0.00281 ## ReduceClash 0 8 4 / 234 = 0.01709 0.01125 # generation 53: best score out of 20: T0287.try5 202.68384 cost/residue, 249 clashes 0.17414 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 4 / 55 = 0.07273 0.00266 ## JiggleSubtree 0 3 1 / 22 = 0.04545 0.00328 ## JiggleSegment 0 2 1 / 17 = 0.05882 0.00052 ## OptSubtree 0 1 2 / 66 = 0.03030 0.00223 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 30 12 / 60 = 0.20000 0.00375 ## TweakPsiSubtree 3 70 64 / 152 = 0.42105 0.01202 ## TweakPsiSegment 1 60 45 / 110 = 0.40909 0.00856 ## TweakPsiPhiSubtree 9 62 30 / 134 = 0.22388 0.01151 ## TweakPsiPhiSegment 10 26 21 / 85 = 0.24706 0.00827 ## TweakHbondSubtree 1 94 65 / 248 = 0.26210 0.02436 ## TweakHbondSegment 5 64 34 / 177 = 0.19209 0.02036 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 34 21 / 69 = 0.30435 0.00288 ## OneRotamer 0 90 48 / 319 = 0.15047 0.03066 ## ClashingRotamer 0 1 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 110 = 0.02727 0.00686 ## ReduceBreak 0 11 6 / 277 = 0.02166 0.02772 ## CloseGap 0 50 7 / 330 = 0.02121 0.03525 ## HealGap 0 3 0 / 221 = 0.00000 0.00000 ## MoveGap 0 32 22 / 360 = 0.06111 0.03173 ## ReduceConstraint 1 6 2 / 236 = 0.00847 0.00453 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 1013 = 0.01678 0.06739 ## InsertFragment 0 13 5 / 218 = 0.02294 0.00254 ## TwoFragment 0 4 2 / 248 = 0.00806 0.00633 ## CrossOver 7 13 6 / 147 = 0.04082 0.01051 ## CrossAndInsert 4 5 2 / 208 = 0.00962 0.00271 ## ReduceClash 0 8 4 / 236 = 0.01695 0.01115 # generation 54: best score out of 20: T0287.try5 202.61783 cost/residue, 250 clashes 0.17365 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 56 = 0.08929 0.00262 ## JiggleSubtree 0 3 1 / 23 = 0.04348 0.00314 ## JiggleSegment 0 2 1 / 17 = 0.05882 0.00052 ## OptSubtree 0 1 2 / 68 = 0.02941 0.00217 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 30 13 / 63 = 0.20635 0.00357 ## TweakPsiSubtree 3 74 69 / 160 = 0.43125 0.01186 ## TweakPsiSegment 1 61 46 / 111 = 0.41441 0.00849 ## TweakPsiPhiSubtree 9 62 30 / 138 = 0.21739 0.01117 ## TweakPsiPhiSegment 11 29 24 / 89 = 0.26966 0.00897 ## TweakHbondSubtree 1 99 67 / 254 = 0.26378 0.02411 ## TweakHbondSegment 5 64 34 / 180 = 0.18889 0.02002 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 35 21 / 71 = 0.29577 0.00280 ## OneRotamer 0 92 50 / 331 = 0.15106 0.02975 ## ClashingRotamer 0 1 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 111 = 0.02703 0.00680 ## ReduceBreak 0 11 6 / 282 = 0.02128 0.02723 ## CloseGap 0 50 7 / 331 = 0.02115 0.03514 ## HealGap 0 3 0 / 222 = 0.00000 0.00000 ## MoveGap 0 32 22 / 366 = 0.06011 0.03121 ## ReduceConstraint 1 6 2 / 241 = 0.00830 0.00444 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 1026 = 0.01657 0.06654 ## InsertFragment 0 13 5 / 220 = 0.02273 0.00252 ## TwoFragment 0 4 2 / 252 = 0.00794 0.00623 ## CrossOver 7 13 6 / 151 = 0.03974 0.01024 ## CrossAndInsert 4 5 2 / 214 = 0.00935 0.00264 ## ReduceClash 0 8 4 / 238 = 0.01681 0.01106 # generation 55: best score out of 20: T0287.try5 202.49454 cost/residue, 247 clashes 0.17386 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 56 = 0.08929 0.00262 ## JiggleSubtree 0 3 1 / 25 = 0.04000 0.00289 ## JiggleSegment 0 2 1 / 17 = 0.05882 0.00052 ## OptSubtree 0 1 2 / 70 = 0.02857 0.00211 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 30 13 / 64 = 0.20312 0.00351 ## TweakPsiSubtree 3 75 70 / 162 = 0.43210 0.01248 ## TweakPsiSegment 1 63 47 / 113 = 0.41593 0.00834 ## TweakPsiPhiSubtree 11 62 30 / 142 = 0.21127 0.01086 ## TweakPsiPhiSegment 12 32 25 / 93 = 0.26882 0.00895 ## TweakHbondSubtree 1 101 68 / 265 = 0.25660 0.02371 ## TweakHbondSegment 5 65 34 / 189 = 0.17989 0.01907 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 35 21 / 71 = 0.29577 0.00280 ## OneRotamer 0 93 50 / 341 = 0.14663 0.02888 ## ClashingRotamer 0 1 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 111 = 0.02703 0.00680 ## ReduceBreak 0 11 6 / 288 = 0.02083 0.02666 ## CloseGap 0 51 7 / 334 = 0.02096 0.03483 ## HealGap 0 3 0 / 225 = 0.00000 0.00000 ## MoveGap 0 32 22 / 368 = 0.05978 0.03104 ## ReduceConstraint 1 6 2 / 244 = 0.00820 0.00438 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 1038 = 0.01638 0.06577 ## InsertFragment 0 13 5 / 225 = 0.02222 0.00246 ## TwoFragment 0 4 2 / 259 = 0.00772 0.00606 ## CrossOver 7 14 7 / 155 = 0.04516 0.01151 ## CrossAndInsert 4 5 2 / 217 = 0.00922 0.00260 ## ReduceClash 0 8 4 / 241 = 0.01660 0.01092 # generation 56: best score out of 20: T0287.try5 201.91817 cost/residue, 241 clashes 0.17471 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 56 = 0.08929 0.00262 ## JiggleSubtree 0 3 1 / 25 = 0.04000 0.00289 ## JiggleSegment 0 2 1 / 19 = 0.05263 0.00046 ## OptSubtree 0 1 2 / 71 = 0.02817 0.00208 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 21 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 30 13 / 65 = 0.20000 0.00346 ## TweakPsiSubtree 3 79 72 / 169 = 0.42604 0.01197 ## TweakPsiSegment 1 63 49 / 116 = 0.42241 0.00824 ## TweakPsiPhiSubtree 12 65 33 / 146 = 0.22603 0.01072 ## TweakPsiPhiSegment 12 36 26 / 102 = 0.25490 0.00826 ## TweakHbondSubtree 1 105 69 / 276 = 0.25000 0.02291 ## TweakHbondSegment 5 66 34 / 190 = 0.17895 0.01897 ## TweakMultimer 30 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 35 21 / 71 = 0.29577 0.00280 ## OneRotamer 0 93 51 / 347 = 0.14697 0.02840 ## ClashingRotamer 0 1 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 112 = 0.02679 0.00674 ## ReduceBreak 0 11 6 / 290 = 0.02069 0.02648 ## CloseGap 0 51 7 / 336 = 0.02083 0.03462 ## HealGap 0 3 0 / 230 = 0.00000 0.00000 ## MoveGap 0 32 22 / 373 = 0.05898 0.03062 ## ReduceConstraint 1 6 2 / 249 = 0.00803 0.00429 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 17 / 1049 = 0.01621 0.06508 ## InsertFragment 0 13 5 / 228 = 0.02193 0.00243 ## TwoFragment 0 4 2 / 260 = 0.00769 0.00604 ## CrossOver 7 15 8 / 169 = 0.04734 0.01479 ## CrossAndInsert 4 5 2 / 221 = 0.00905 0.00255 ## ReduceClash 0 8 4 / 242 = 0.01653 0.01088 # generation 57: best score out of 20: T0287.try5 201.65529 cost/residue, 239 clashes 0.17377 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 56 = 0.08929 0.00262 ## JiggleSubtree 0 3 1 / 27 = 0.03704 0.00268 ## JiggleSegment 0 2 1 / 19 = 0.05263 0.00046 ## OptSubtree 0 2 3 / 73 = 0.04110 0.01351 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 31 13 / 66 = 0.19697 0.00341 ## TweakPsiSubtree 3 81 73 / 172 = 0.42442 0.01181 ## TweakPsiSegment 1 63 49 / 117 = 0.41880 0.00817 ## TweakPsiPhiSubtree 13 66 33 / 149 = 0.22148 0.01050 ## TweakPsiPhiSegment 15 37 26 / 105 = 0.24762 0.00802 ## TweakHbondSubtree 1 110 73 / 284 = 0.25704 0.02276 ## TweakHbondSegment 5 66 34 / 194 = 0.17526 0.01857 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 36 22 / 73 = 0.30137 0.00273 ## OneRotamer 0 94 51 / 350 = 0.14571 0.02816 ## ClashingRotamer 0 1 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 115 = 0.02609 0.00656 ## ReduceBreak 0 11 6 / 294 = 0.02041 0.02612 ## CloseGap 0 51 7 / 340 = 0.02059 0.03421 ## HealGap 0 3 0 / 232 = 0.00000 0.00000 ## MoveGap 0 32 22 / 377 = 0.05836 0.03030 ## ReduceConstraint 1 6 2 / 255 = 0.00784 0.00419 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 18 / 1064 = 0.01692 0.06449 ## InsertFragment 0 13 5 / 230 = 0.02174 0.00241 ## TwoFragment 0 4 2 / 262 = 0.00763 0.00599 ## CrossOver 7 17 10 / 183 = 0.05464 0.01489 ## CrossAndInsert 4 5 2 / 227 = 0.00881 0.00249 ## ReduceClash 0 8 4 / 246 = 0.01626 0.01070 # generation 58: best score out of 20: T0287.try5 201.65529 cost/residue, 239 clashes 0.17377 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 57 = 0.08772 0.00258 ## JiggleSubtree 0 3 1 / 28 = 0.03571 0.00258 ## JiggleSegment 0 2 1 / 20 = 0.05000 0.00044 ## OptSubtree 0 2 3 / 87 = 0.03448 0.01133 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 32 13 / 67 = 0.19403 0.00336 ## TweakPsiSubtree 3 83 74 / 178 = 0.41573 0.01144 ## TweakPsiSegment 1 63 49 / 118 = 0.41525 0.00810 ## TweakPsiPhiSubtree 13 68 33 / 151 = 0.21854 0.01036 ## TweakPsiPhiSegment 18 38 27 / 106 = 0.25472 0.00820 ## TweakHbondSubtree 1 114 73 / 292 = 0.25000 0.02214 ## TweakHbondSegment 5 68 34 / 198 = 0.17172 0.01820 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 36 22 / 74 = 0.29730 0.00270 ## OneRotamer 0 96 52 / 358 = 0.14525 0.02761 ## ClashingRotamer 0 1 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 115 = 0.02609 0.00656 ## ReduceBreak 0 11 6 / 296 = 0.02027 0.02594 ## CloseGap 0 51 7 / 340 = 0.02059 0.03421 ## HealGap 0 3 0 / 234 = 0.00000 0.00000 ## MoveGap 0 32 22 / 383 = 0.05744 0.02982 ## ReduceConstraint 1 6 2 / 257 = 0.00778 0.00416 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 18 / 1078 = 0.01670 0.06365 ## InsertFragment 0 13 5 / 235 = 0.02128 0.00236 ## TwoFragment 0 4 2 / 263 = 0.00760 0.00597 ## CrossOver 7 17 10 / 195 = 0.05128 0.01398 ## CrossAndInsert 4 5 2 / 229 = 0.00873 0.00246 ## ReduceClash 0 8 4 / 249 = 0.01606 0.01057 # generation 59: best score out of 20: T0287.try5 201.63257 cost/residue, 239 clashes 0.17425 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 57 = 0.08772 0.00258 ## JiggleSubtree 0 4 2 / 29 = 0.06897 0.00437 ## JiggleSegment 0 2 1 / 21 = 0.04762 0.00042 ## OptSubtree 0 3 3 / 98 = 0.03061 0.01006 ## OptSegment 1 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 34 14 / 71 = 0.19718 0.00317 ## TweakPsiSubtree 3 88 75 / 184 = 0.40761 0.01155 ## TweakPsiSegment 1 63 49 / 118 = 0.41525 0.00810 ## TweakPsiPhiSubtree 14 69 33 / 156 = 0.21154 0.01003 ## TweakPsiPhiSegment 18 38 27 / 110 = 0.24545 0.00790 ## TweakHbondSubtree 1 119 75 / 301 = 0.24917 0.02158 ## TweakHbondSegment 7 68 34 / 200 = 0.17000 0.01802 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 36 22 / 74 = 0.29730 0.00270 ## OneRotamer 0 96 52 / 363 = 0.14325 0.02723 ## ClashingRotamer 0 1 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 115 = 0.02609 0.00656 ## ReduceBreak 0 11 6 / 303 = 0.01980 0.02534 ## CloseGap 0 52 7 / 348 = 0.02011 0.03342 ## HealGap 0 3 0 / 236 = 0.00000 0.00000 ## MoveGap 0 32 22 / 388 = 0.05670 0.02944 ## ReduceConstraint 1 6 2 / 259 = 0.00772 0.00413 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 18 / 1082 = 0.01664 0.06342 ## InsertFragment 0 13 5 / 238 = 0.02101 0.00233 ## TwoFragment 0 4 2 / 268 = 0.00746 0.00586 ## CrossOver 8 17 10 / 203 = 0.04926 0.01343 ## CrossAndInsert 4 5 2 / 233 = 0.00858 0.00242 ## ReduceClash 0 8 4 / 253 = 0.01581 0.01041 # generation 60: best score out of 20: T0287.try5 201.54086 cost/residue, 237 clashes 0.17198 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 5 / 57 = 0.08772 0.00258 ## JiggleSubtree 0 4 2 / 33 = 0.06061 0.00384 ## JiggleSegment 0 2 1 / 21 = 0.04762 0.00042 ## OptSubtree 0 3 3 / 107 = 0.02804 0.00922 ## OptSegment 1 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 1 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 25 = 0.00000 0.00000 ## TweakPhiSubtree 0 14 4 / 23 = 0.17391 0.00074 ## TweakPhiSegment 0 34 14 / 71 = 0.19718 0.00317 ## TweakPsiSubtree 3 92 79 / 190 = 0.41579 0.01169 ## TweakPsiSegment 1 64 49 / 120 = 0.40833 0.00797 ## TweakPsiPhiSubtree 14 69 33 / 157 = 0.21019 0.00997 ## TweakPsiPhiSegment 18 38 27 / 112 = 0.24107 0.00776 ## TweakHbondSubtree 1 123 79 / 312 = 0.25321 0.02127 ## TweakHbondSegment 7 69 34 / 203 = 0.16749 0.01775 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 36 22 / 74 = 0.29730 0.00270 ## OneRotamer 0 96 52 / 368 = 0.14130 0.02686 ## ClashingRotamer 0 1 0 / 54 = 0.00000 0.00000 ## ClusteredRotamer 1 13 3 / 115 = 0.02609 0.00656 ## ReduceBreak 0 11 6 / 310 = 0.01935 0.02477 ## CloseGap 0 53 7 / 352 = 0.01989 0.03304 ## HealGap 0 3 0 / 238 = 0.00000 0.00000 ## MoveGap 0 32 22 / 394 = 0.05584 0.02899 ## ReduceConstraint 1 6 2 / 260 = 0.00769 0.00411 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 18 / 1096 = 0.01642 0.06261 ## InsertFragment 0 13 5 / 239 = 0.02092 0.00232 ## TwoFragment 0 4 2 / 273 = 0.00733 0.00575 ## CrossOver 8 18 11 / 207 = 0.05314 0.01372 ## CrossAndInsert 4 5 2 / 233 = 0.00858 0.00242 ## ReduceClash 0 8 4 / 258 = 0.01550 0.01020 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2027740553.pdb -s /var/tmp/to_scwrl_2027740553.seq -o /var/tmp/from_scwrl_2027740553.pdb > /var/tmp/scwrl_2027740553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027740553.pdb # T0287.try5-scwrl 199.78859 cost/residue 200 clashes 0.17198 breaks # iteration 4 # filling pool to have 20 conformations # best score in initial pool out of 20: T0287.try5 at pool[8] 228.09874 cost/residue, 263 clashes 0.28657 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # Closing gap before 46 without wiggling. # generation 1: best score out of 20: T0287.try5 228.09201 cost/residue, 259 clashes 0.28657 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 1 / 2 = 0.50000 0.00913 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 1 1 / 3 = 0.33333 0.17173 ## ReduceBreak 0 3 2 / 8 = 0.25000 0.87658 ## CloseGap 0 3 3 / 10 = 0.30000 0.13820 ## HealGap 0 0 0 / 3 = 0.00000 0.00000 ## MoveGap 1 2 3 / 4 = 0.75000 2.78934 ## ReduceConstraint 0 2 1 / 3 = 0.33333 1.48667 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 2 / 24 = 0.08333 0.36896 ## InsertFragment 0 0 0 / 4 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 6 = 0.16667 0.35000 ## CrossOver 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 6 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 8 = 0.00000 0.00000 # generation 2: best score out of 20: T0287.try5 227.89174 cost/residue, 290 clashes 0.31849 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 1 = 1.00000 0.01703 ## TweakPsiPhiSubtree 0 1 1 / 4 = 0.25000 0.00457 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 2 1 / 6 = 0.16667 0.08586 ## ReduceBreak 0 3 2 / 14 = 0.14286 0.50090 ## CloseGap 0 3 3 / 17 = 0.17647 0.08130 ## HealGap 0 0 0 / 8 = 0.00000 0.00000 ## MoveGap 1 6 4 / 11 = 0.36364 1.01850 ## ReduceConstraint 0 3 1 / 8 = 0.12500 0.55750 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 3 / 52 = 0.05769 0.17414 ## InsertFragment 0 2 0 / 16 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 10 = 0.10000 0.21000 ## CrossOver 0 0 0 / 8 = 0.00000 0.00000 ## CrossAndInsert 1 0 0 / 12 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 10 = 0.00000 0.00000 # generation 3: best score out of 20: T0287.try5 227.73611 cost/residue, 289 clashes 0.31803 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 2 2 / 2 = 1.00000 0.08633 ## TweakPsiPhiSubtree 0 2 1 / 5 = 0.20000 0.00365 ## TweakPsiPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 0 3 1 / 8 = 0.12500 0.06440 ## ReduceBreak 0 4 2 / 21 = 0.09524 0.33394 ## CloseGap 0 3 3 / 24 = 0.12500 0.05758 ## HealGap 0 0 0 / 12 = 0.00000 0.00000 ## MoveGap 1 9 4 / 19 = 0.21053 0.58966 ## ReduceConstraint 0 3 1 / 13 = 0.07692 0.34308 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 3 / 82 = 0.03659 0.11043 ## InsertFragment 0 2 0 / 21 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 16 = 0.06250 0.13125 ## CrossOver 0 1 0 / 9 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 15 = 0.00000 0.00000 # generation 4: best score out of 20: T0287.try5 227.18643 cost/residue, 296 clashes 0.32885 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 2 2 / 2 = 1.00000 0.08633 ## TweakPsiPhiSubtree 0 2 1 / 5 = 0.20000 0.00365 ## TweakPsiPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 3 1 / 10 = 0.10000 0.05152 ## ReduceBreak 0 7 2 / 33 = 0.06061 0.21250 ## CloseGap 0 3 3 / 28 = 0.10714 0.04936 ## HealGap 0 0 0 / 17 = 0.00000 0.00000 ## MoveGap 1 10 4 / 28 = 0.14286 0.40013 ## ReduceConstraint 0 7 3 / 26 = 0.11538 0.20778 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 9 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 4 / 103 = 0.03883 0.09556 ## InsertFragment 0 3 0 / 25 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 22 = 0.04545 0.09545 ## CrossOver 0 1 0 / 12 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 18 = 0.00000 0.00000 # generation 5: best score out of 20: T0287.try5 223.98531 cost/residue, 303 clashes 0.19462 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 2 1 / 3 = 0.33333 0.02021 ## TweakPsiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 4 3 / 5 = 0.60000 0.03618 ## TweakPsiPhiSubtree 0 2 1 / 5 = 0.20000 0.00365 ## TweakPsiPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 2 = 0.50000 0.41946 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 4 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 0 3 1 / 11 = 0.09091 0.04683 ## ReduceBreak 0 8 3 / 37 = 0.08108 0.20698 ## CloseGap 0 3 3 / 30 = 0.10000 0.04607 ## HealGap 0 0 0 / 25 = 0.00000 0.00000 ## MoveGap 1 17 10 / 37 = 0.27027 0.37906 ## ReduceConstraint 0 7 3 / 33 = 0.09091 0.16370 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 5 / 127 = 0.03937 0.10517 ## InsertFragment 0 3 0 / 30 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 29 = 0.03448 0.07241 ## CrossOver 0 1 0 / 16 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 34 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 24 = 0.00000 0.00000 # generation 6: best score out of 20: T0287.try5 222.48964 cost/residue, 282 clashes 0.25700 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 4 = 0.25000 0.01516 ## TweakPsiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 4 4 / 6 = 0.66667 0.03028 ## TweakPsiPhiSubtree 0 2 1 / 5 = 0.20000 0.00365 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 1 3 / 9 = 0.33333 0.10709 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 4 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 4 2 / 13 = 0.15385 0.04796 ## ReduceBreak 0 8 4 / 45 = 0.08889 0.17150 ## CloseGap 0 4 3 / 36 = 0.08333 0.03839 ## HealGap 0 0 0 / 27 = 0.00000 0.00000 ## MoveGap 1 20 13 / 43 = 0.30233 0.39429 ## ReduceConstraint 0 7 3 / 40 = 0.07500 0.13505 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 8 / 148 = 0.05405 0.10863 ## InsertFragment 0 3 0 / 34 = 0.00000 0.00000 ## TwoFragment 0 0 1 / 39 = 0.02564 0.05385 ## CrossOver 0 3 0 / 19 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 42 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 28 = 0.00000 0.00000 # generation 7: best score out of 20: T0287.try5 222.19228 cost/residue, 281 clashes 0.24592 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 1 / 1 = 1.00000 0.01634 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 4 = 0.25000 0.01516 ## TweakPsiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 4 4 / 6 = 0.66667 0.03028 ## TweakPsiPhiSubtree 1 2 1 / 5 = 0.20000 0.00365 ## TweakPsiPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 3 / 12 = 0.25000 0.08031 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 6 = 0.16667 0.00015 ## OneRotamer 0 4 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 5 3 / 17 = 0.17647 0.05796 ## ReduceBreak 0 10 7 / 51 = 0.13725 0.18407 ## CloseGap 0 5 3 / 42 = 0.07143 0.03291 ## HealGap 0 0 0 / 27 = 0.00000 0.00000 ## MoveGap 1 25 17 / 52 = 0.32692 0.39891 ## ReduceConstraint 0 7 3 / 51 = 0.05882 0.10592 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 9 / 177 = 0.05085 0.09634 ## InsertFragment 0 5 1 / 43 = 0.02326 0.00348 ## TwoFragment 0 0 1 / 46 = 0.02174 0.04565 ## CrossOver 0 3 0 / 22 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 44 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 34 = 0.02941 0.02400 # generation 8: best score out of 20: T0287.try5 222.11743 cost/residue, 281 clashes 0.28331 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.00817 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 3 1 / 5 = 0.20000 0.01213 ## TweakPsiSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakPsiSegment 0 4 4 / 6 = 0.66667 0.03028 ## TweakPsiPhiSubtree 1 3 1 / 6 = 0.16667 0.00304 ## TweakPsiPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 3 / 13 = 0.23077 0.07414 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 6 = 0.16667 0.00015 ## OneRotamer 0 4 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 6 3 / 21 = 0.14286 0.04692 ## ReduceBreak 0 11 8 / 57 = 0.14035 0.16830 ## CloseGap 0 8 6 / 51 = 0.11765 0.07629 ## HealGap 0 0 0 / 29 = 0.00000 0.00000 ## MoveGap 1 30 21 / 65 = 0.32308 0.35645 ## ReduceConstraint 0 7 3 / 56 = 0.05357 0.09647 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 14 9 / 198 = 0.04545 0.08612 ## InsertFragment 0 6 2 / 50 = 0.04000 0.00828 ## TwoFragment 0 0 1 / 58 = 0.01724 0.03621 ## CrossOver 0 3 0 / 26 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 39 = 0.02564 0.02092 # generation 9: best score out of 20: T0287.try5 218.42456 cost/residue, 261 clashes 0.17308 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.00817 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 4 2 / 6 = 0.33333 0.01011 ## TweakPsiSubtree 0 2 0 / 6 = 0.00000 0.00000 ## TweakPsiSegment 0 5 6 / 9 = 0.66667 0.05167 ## TweakPsiPhiSubtree 1 3 1 / 6 = 0.16667 0.00304 ## TweakPsiPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 3 / 15 = 0.20000 0.06425 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 6 = 0.16667 0.00015 ## OneRotamer 0 4 0 / 6 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 6 3 / 26 = 0.11538 0.03790 ## ReduceBreak 0 11 8 / 64 = 0.12500 0.14989 ## CloseGap 0 9 6 / 55 = 0.10909 0.07075 ## HealGap 0 0 0 / 31 = 0.00000 0.00000 ## MoveGap 1 35 25 / 77 = 0.32468 0.36898 ## ReduceConstraint 0 7 3 / 60 = 0.05000 0.09004 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 16 10 / 220 = 0.04545 0.09478 ## InsertFragment 0 9 4 / 54 = 0.07407 0.03072 ## TwoFragment 0 0 1 / 68 = 0.01471 0.03088 ## CrossOver 0 3 0 / 30 = 0.00000 0.00000 ## CrossAndInsert 2 0 0 / 51 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 47 = 0.02128 0.01736 # generation 10: best score out of 20: T0287.try5 216.10706 cost/residue, 311 clashes 0.16556 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.00817 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 5 2 / 7 = 0.28571 0.00866 ## TweakPsiSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakPsiSegment 0 5 6 / 10 = 0.60000 0.04651 ## TweakPsiPhiSubtree 1 3 1 / 6 = 0.16667 0.00304 ## TweakPsiPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 3 4 / 17 = 0.23529 0.08054 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 6 = 0.16667 0.00015 ## OneRotamer 0 4 0 / 6 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 0 8 3 / 29 = 0.10345 0.03398 ## ReduceBreak 0 13 9 / 72 = 0.12500 0.21775 ## CloseGap 0 12 7 / 62 = 0.11290 0.06816 ## HealGap 0 0 0 / 40 = 0.00000 0.00000 ## MoveGap 1 39 28 / 86 = 0.32558 0.40338 ## ReduceConstraint 0 8 4 / 65 = 0.06154 0.08365 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 16 11 / 242 = 0.04545 0.08811 ## InsertFragment 0 9 4 / 59 = 0.06780 0.02811 ## TwoFragment 0 0 1 / 72 = 0.01389 0.02917 ## CrossOver 0 4 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 3 0 0 / 58 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 53 = 0.03774 0.02799 # generation 11: best score out of 20: T0287.try5 215.98901 cost/residue, 306 clashes 0.16556 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.00817 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 8 = 0.25000 0.00758 ## TweakPsiSubtree 0 5 1 / 9 = 0.11111 0.00014 ## TweakPsiSegment 0 6 7 / 13 = 0.53846 0.03611 ## TweakPsiPhiSubtree 1 3 1 / 6 = 0.16667 0.00304 ## TweakPsiPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 4 4 / 19 = 0.21053 0.07207 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 9 = 0.11111 0.00010 ## OneRotamer 0 4 0 / 6 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 31 = 0.12903 0.03559 ## ReduceBreak 0 13 9 / 80 = 0.11250 0.19598 ## CloseGap 0 15 10 / 71 = 0.14085 0.06946 ## HealGap 0 0 0 / 45 = 0.00000 0.00000 ## MoveGap 1 42 30 / 95 = 0.31579 0.39663 ## ReduceConstraint 0 8 4 / 69 = 0.05797 0.07880 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 16 11 / 256 = 0.04297 0.08330 ## InsertFragment 0 11 5 / 70 = 0.07143 0.02718 ## TwoFragment 0 0 1 / 77 = 0.01299 0.02727 ## CrossOver 0 4 0 / 32 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 64 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 60 = 0.03333 0.02473 # generation 12: best score out of 20: T0287.try5 214.40483 cost/residue, 314 clashes 0.17511 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.00817 ## JiggleSubtree 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 8 = 0.25000 0.00758 ## TweakPsiSubtree 0 5 1 / 10 = 0.10000 0.00012 ## TweakPsiSegment 0 8 8 / 15 = 0.53333 0.03176 ## TweakPsiPhiSubtree 1 3 1 / 6 = 0.16667 0.00304 ## TweakPsiPhiSegment 0 2 1 / 5 = 0.20000 0.06260 ## TweakHbondSubtree 0 0 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 6 6 / 21 = 0.28571 0.06753 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 9 = 0.11111 0.00010 ## OneRotamer 0 6 0 / 9 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 33 = 0.12121 0.03344 ## ReduceBreak 0 14 11 / 89 = 0.12360 0.19532 ## CloseGap 0 16 11 / 77 = 0.14286 0.06742 ## HealGap 0 0 0 / 48 = 0.00000 0.00000 ## MoveGap 1 42 30 / 107 = 0.28037 0.35215 ## ReduceConstraint 0 9 4 / 79 = 0.05063 0.06883 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 18 13 / 277 = 0.04693 0.08715 ## InsertFragment 0 11 5 / 73 = 0.06849 0.02606 ## TwoFragment 0 0 1 / 80 = 0.01250 0.02625 ## CrossOver 0 4 0 / 37 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 68 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 64 = 0.03125 0.02318 # generation 13: best score out of 20: T0287.try5 213.00533 cost/residue, 290 clashes 0.22024 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.00817 ## JiggleSubtree 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 8 = 0.25000 0.00758 ## TweakPsiSubtree 0 6 2 / 11 = 0.18182 0.00012 ## TweakPsiSegment 0 9 8 / 16 = 0.50000 0.02978 ## TweakPsiPhiSubtree 1 3 1 / 6 = 0.16667 0.00304 ## TweakPsiPhiSegment 0 5 2 / 11 = 0.18182 0.02990 ## TweakHbondSubtree 0 0 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 7 7 / 23 = 0.30435 0.08935 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 9 = 0.11111 0.00010 ## OneRotamer 0 7 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 35 = 0.11429 0.03152 ## ReduceBreak 0 15 11 / 99 = 0.11111 0.17559 ## CloseGap 0 16 11 / 85 = 0.12941 0.06108 ## HealGap 0 0 0 / 51 = 0.00000 0.00000 ## MoveGap 1 43 31 / 121 = 0.25620 0.32297 ## ReduceConstraint 0 9 4 / 83 = 0.04819 0.06551 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 18 13 / 292 = 0.04452 0.08267 ## InsertFragment 0 12 6 / 75 = 0.08000 0.02793 ## TwoFragment 0 0 1 / 86 = 0.01163 0.02442 ## CrossOver 0 5 0 / 44 = 0.00000 0.00000 ## CrossAndInsert 4 0 0 / 76 = 0.00000 0.00000 ## ReduceClash 0 5 3 / 69 = 0.04348 0.02532 # Closing gap before 184 next to short segment # generation 14: best score out of 20: T0287.try5 211.12958 cost/residue, 264 clashes 0.19094 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.00817 ## JiggleSubtree 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 8 = 0.25000 0.00758 ## TweakPsiSubtree 0 6 2 / 11 = 0.18182 0.00012 ## TweakPsiSegment 0 9 8 / 16 = 0.50000 0.02978 ## TweakPsiPhiSubtree 1 5 2 / 8 = 0.25000 0.00393 ## TweakPsiPhiSegment 0 5 2 / 11 = 0.18182 0.02990 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 7 7 / 25 = 0.28000 0.08221 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 9 = 0.11111 0.00010 ## OneRotamer 0 8 0 / 11 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 40 = 0.10000 0.02758 ## ReduceBreak 0 17 13 / 107 = 0.12150 0.18169 ## CloseGap 0 16 11 / 93 = 0.11828 0.05582 ## HealGap 0 0 0 / 54 = 0.00000 0.00000 ## MoveGap 1 45 32 / 131 = 0.24427 0.31264 ## ReduceConstraint 0 9 4 / 91 = 0.04396 0.05975 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 13 / 314 = 0.04140 0.07688 ## InsertFragment 0 14 7 / 84 = 0.08333 0.04456 ## TwoFragment 0 0 1 / 91 = 0.01099 0.02308 ## CrossOver 1 5 0 / 46 = 0.00000 0.00000 ## CrossAndInsert 4 1 1 / 81 = 0.01235 0.00541 ## ReduceClash 0 5 3 / 71 = 0.04225 0.02461 # generation 15: best score out of 20: T0287.try5 211.12958 cost/residue, 264 clashes 0.19094 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 3 = 0.33333 0.00545 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 9 = 0.22222 0.00674 ## TweakPsiSubtree 0 6 2 / 12 = 0.16667 0.00011 ## TweakPsiSegment 0 10 8 / 17 = 0.47059 0.02802 ## TweakPsiPhiSubtree 1 8 3 / 11 = 0.27273 0.00455 ## TweakPsiPhiSegment 0 5 2 / 11 = 0.18182 0.02990 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 9 7 / 29 = 0.24138 0.07087 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 9 = 0.11111 0.00010 ## OneRotamer 0 8 0 / 11 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 40 = 0.10000 0.02758 ## ReduceBreak 0 18 13 / 115 = 0.11304 0.16905 ## CloseGap 0 16 11 / 94 = 0.11702 0.05523 ## HealGap 0 0 0 / 59 = 0.00000 0.00000 ## MoveGap 1 46 32 / 142 = 0.22535 0.28842 ## ReduceConstraint 0 9 4 / 97 = 0.04124 0.05605 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 19 13 / 337 = 0.03858 0.07163 ## InsertFragment 0 14 7 / 89 = 0.07865 0.04206 ## TwoFragment 0 0 1 / 100 = 0.01000 0.02100 ## CrossOver 1 5 0 / 47 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 87 = 0.01149 0.00503 ## ReduceClash 0 7 3 / 78 = 0.03846 0.02240 # generation 16: best score out of 20: T0287.try5 211.12958 cost/residue, 264 clashes 0.19094 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 3 = 0.33333 0.00545 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 9 = 0.22222 0.00674 ## TweakPsiSubtree 0 6 2 / 12 = 0.16667 0.00011 ## TweakPsiSegment 0 11 8 / 20 = 0.40000 0.02382 ## TweakPsiPhiSubtree 1 8 3 / 11 = 0.27273 0.00455 ## TweakPsiPhiSegment 0 7 2 / 13 = 0.15385 0.02530 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 10 8 / 32 = 0.25000 0.06435 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 1 / 9 = 0.11111 0.00010 ## OneRotamer 0 9 0 / 12 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 41 = 0.09756 0.02691 ## ReduceBreak 0 19 14 / 124 = 0.11290 0.17031 ## CloseGap 0 17 12 / 101 = 0.11881 0.07580 ## HealGap 0 0 0 / 64 = 0.00000 0.00000 ## MoveGap 1 48 32 / 153 = 0.20915 0.26768 ## ReduceConstraint 0 9 4 / 102 = 0.03922 0.05331 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 20 13 / 361 = 0.03601 0.06687 ## InsertFragment 0 14 7 / 94 = 0.07447 0.03982 ## TwoFragment 0 0 1 / 104 = 0.00962 0.02019 ## CrossOver 1 5 0 / 49 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 88 = 0.01136 0.00498 ## ReduceClash 0 8 4 / 86 = 0.04651 0.02097 # generation 17: best score out of 20: T0287.try5 210.86177 cost/residue, 265 clashes 0.19407 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 3 = 0.33333 0.00545 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 9 = 0.22222 0.00674 ## TweakPsiSubtree 0 6 2 / 12 = 0.16667 0.00011 ## TweakPsiSegment 0 12 8 / 22 = 0.36364 0.02165 ## TweakPsiPhiSubtree 1 10 5 / 14 = 0.35714 0.00604 ## TweakPsiPhiSegment 0 8 2 / 14 = 0.14286 0.02350 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 12 8 / 36 = 0.22222 0.05720 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 10 = 0.10000 0.00009 ## OneRotamer 0 9 0 / 12 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 42 = 0.09524 0.02627 ## ReduceBreak 0 20 15 / 132 = 0.11364 0.16202 ## CloseGap 0 17 12 / 104 = 0.11538 0.07362 ## HealGap 0 0 0 / 68 = 0.00000 0.00000 ## MoveGap 1 48 32 / 167 = 0.19162 0.24524 ## ReduceConstraint 0 9 4 / 110 = 0.03636 0.04943 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 21 13 / 379 = 0.03430 0.06369 ## InsertFragment 0 15 7 / 100 = 0.07000 0.03743 ## TwoFragment 0 0 1 / 113 = 0.00885 0.01858 ## CrossOver 1 6 0 / 56 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 92 = 0.01087 0.00476 ## ReduceClash 0 8 4 / 90 = 0.04444 0.02004 # generation 18: best score out of 20: T0287.try5 210.77583 cost/residue, 262 clashes 0.19902 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 3 = 0.33333 0.00545 ## JiggleSubtree 0 3 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 6 2 / 9 = 0.22222 0.00674 ## TweakPsiSubtree 0 6 2 / 12 = 0.16667 0.00011 ## TweakPsiSegment 0 12 8 / 22 = 0.36364 0.02165 ## TweakPsiPhiSubtree 1 10 5 / 14 = 0.35714 0.00604 ## TweakPsiPhiSegment 0 10 4 / 16 = 0.25000 0.02672 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 13 8 / 37 = 0.21622 0.05565 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 10 = 0.10000 0.00009 ## OneRotamer 0 10 1 / 13 = 0.07692 0.01703 ## ClashingRotamer 0 0 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 0 9 4 / 43 = 0.09302 0.02566 ## ReduceBreak 0 22 16 / 149 = 0.10738 0.14411 ## CloseGap 0 17 12 / 111 = 0.10811 0.06897 ## HealGap 0 0 0 / 74 = 0.00000 0.00000 ## MoveGap 1 51 32 / 178 = 0.17978 0.23009 ## ReduceConstraint 0 9 4 / 116 = 0.03448 0.04687 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 406 = 0.03202 0.05946 ## InsertFragment 0 15 7 / 104 = 0.06731 0.03599 ## TwoFragment 0 0 1 / 116 = 0.00862 0.01810 ## CrossOver 1 7 0 / 58 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 95 = 0.01053 0.00461 ## ReduceClash 0 8 4 / 94 = 0.04255 0.01919 # generation 19: best score out of 20: T0287.try5 210.59448 cost/residue, 262 clashes 0.19788 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00409 ## JiggleSubtree 0 3 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 7 2 / 10 = 0.20000 0.00607 ## TweakPsiSubtree 0 7 2 / 13 = 0.15385 0.00010 ## TweakPsiSegment 0 12 8 / 24 = 0.33333 0.01985 ## TweakPsiPhiSubtree 1 11 5 / 15 = 0.33333 0.00564 ## TweakPsiPhiSegment 0 11 4 / 17 = 0.23529 0.02515 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 17 8 / 43 = 0.18605 0.04789 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 10 = 0.10000 0.00009 ## OneRotamer 0 10 1 / 17 = 0.05882 0.01302 ## ClashingRotamer 0 0 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 0 10 5 / 45 = 0.11111 0.02492 ## ReduceBreak 0 24 17 / 161 = 0.10559 0.13449 ## CloseGap 0 17 12 / 117 = 0.10256 0.06544 ## HealGap 0 0 0 / 79 = 0.00000 0.00000 ## MoveGap 1 51 32 / 187 = 0.17112 0.21901 ## ReduceConstraint 0 9 4 / 124 = 0.03226 0.04385 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 419 = 0.03103 0.05761 ## InsertFragment 0 15 7 / 110 = 0.06364 0.03403 ## TwoFragment 0 0 1 / 117 = 0.00855 0.01795 ## CrossOver 1 7 0 / 61 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 97 = 0.01031 0.00451 ## ReduceClash 0 8 4 / 104 = 0.03846 0.01734 # generation 20: best score out of 20: T0287.try5 210.16508 cost/residue, 260 clashes 0.19902 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00409 ## JiggleSubtree 0 4 1 / 6 = 0.16667 0.01342 ## JiggleSegment 0 2 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 28 = 0.00000 0.00000 ## OptSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 8 3 / 11 = 0.27273 0.00552 ## TweakPsiSubtree 0 8 3 / 14 = 0.21429 0.00021 ## TweakPsiSegment 0 14 9 / 26 = 0.34615 0.02308 ## TweakPsiPhiSubtree 1 13 6 / 17 = 0.35294 0.00692 ## TweakPsiPhiSegment 0 11 4 / 17 = 0.23529 0.02515 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 17 8 / 44 = 0.18182 0.04680 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 10 1 / 18 = 0.05556 0.01230 ## ClashingRotamer 0 0 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 0 10 5 / 46 = 0.10870 0.02438 ## ReduceBreak 0 24 17 / 169 = 0.10059 0.12813 ## CloseGap 0 17 12 / 127 = 0.09449 0.06028 ## HealGap 0 0 0 / 88 = 0.00000 0.00000 ## MoveGap 1 52 32 / 200 = 0.16000 0.20478 ## ReduceConstraint 0 9 4 / 126 = 0.03175 0.04315 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 435 = 0.02989 0.05549 ## InsertFragment 0 16 8 / 117 = 0.06838 0.03721 ## TwoFragment 0 0 1 / 120 = 0.00833 0.01750 ## CrossOver 1 7 0 / 63 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 101 = 0.00990 0.00434 ## ReduceClash 0 9 5 / 111 = 0.04505 0.01658 # generation 21: best score out of 20: T0287.try5 210.03085 cost/residue, 270 clashes 0.20126 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 4 = 0.25000 0.00409 ## JiggleSubtree 0 4 1 / 9 = 0.11111 0.00895 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 29 = 0.00000 0.00000 ## OptSegment 0 1 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 8 3 / 11 = 0.27273 0.00552 ## TweakPsiSubtree 0 8 3 / 14 = 0.21429 0.00021 ## TweakPsiSegment 0 16 10 / 28 = 0.35714 0.02184 ## TweakPsiPhiSubtree 1 14 6 / 19 = 0.31579 0.00619 ## TweakPsiPhiSegment 0 13 5 / 21 = 0.23810 0.02394 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 18 9 / 45 = 0.20000 0.04595 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 11 1 / 22 = 0.04545 0.01006 ## ClashingRotamer 0 0 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 0 10 5 / 46 = 0.10870 0.02438 ## ReduceBreak 0 25 18 / 182 = 0.09890 0.12287 ## CloseGap 0 17 12 / 135 = 0.08889 0.05671 ## HealGap 0 1 0 / 93 = 0.00000 0.00000 ## MoveGap 1 52 32 / 213 = 0.15023 0.19228 ## ReduceConstraint 0 9 4 / 129 = 0.03101 0.04215 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 452 = 0.02876 0.05341 ## InsertFragment 0 17 9 / 123 = 0.07317 0.03601 ## TwoFragment 0 0 1 / 125 = 0.00800 0.01680 ## CrossOver 1 9 0 / 66 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 103 = 0.00971 0.00425 ## ReduceClash 0 9 5 / 114 = 0.04386 0.01614 # generation 22: best score out of 20: T0287.try5 210.02544 cost/residue, 246 clashes 0.20223 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 5 = 0.20000 0.00327 ## JiggleSubtree 0 5 1 / 11 = 0.09091 0.00732 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 29 = 0.00000 0.00000 ## OptSegment 0 1 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 10 4 / 13 = 0.30769 0.06240 ## TweakPsiSubtree 0 8 3 / 15 = 0.20000 0.00019 ## TweakPsiSegment 0 16 10 / 28 = 0.35714 0.02184 ## TweakPsiPhiSubtree 2 15 7 / 20 = 0.35000 0.00682 ## TweakPsiPhiSegment 0 16 5 / 24 = 0.20833 0.02094 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 21 9 / 49 = 0.18367 0.04220 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 11 1 / 23 = 0.04348 0.00962 ## ClashingRotamer 0 0 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 0 10 5 / 50 = 0.10000 0.02243 ## ReduceBreak 0 25 18 / 191 = 0.09424 0.11708 ## CloseGap 0 17 12 / 145 = 0.08276 0.05280 ## HealGap 0 1 0 / 95 = 0.00000 0.00000 ## MoveGap 1 52 32 / 226 = 0.14159 0.18122 ## ReduceConstraint 0 9 4 / 134 = 0.02985 0.04058 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 468 = 0.02778 0.05158 ## InsertFragment 0 18 9 / 130 = 0.06923 0.03408 ## TwoFragment 0 0 1 / 129 = 0.00775 0.01628 ## CrossOver 1 10 0 / 69 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 105 = 0.00952 0.00417 ## ReduceClash 0 9 5 / 120 = 0.04167 0.01533 # generation 23: best score out of 20: T0287.try5 208.75639 cost/residue, 248 clashes 0.20223 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 6 = 0.16667 0.00272 ## JiggleSubtree 0 6 1 / 13 = 0.07692 0.00620 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 31 = 0.00000 0.00000 ## OptSegment 0 1 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 1 14 5 / 25 = 0.20000 0.03245 ## TweakPsiSubtree 0 10 4 / 17 = 0.23529 0.00023 ## TweakPsiSegment 0 16 11 / 29 = 0.37931 0.02123 ## TweakPsiPhiSubtree 2 16 9 / 24 = 0.37500 0.01053 ## TweakPsiPhiSegment 1 17 5 / 25 = 0.20000 0.02011 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 22 9 / 51 = 0.17647 0.04054 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 11 1 / 24 = 0.04167 0.00922 ## ClashingRotamer 0 1 1 / 30 = 0.03333 0.00544 ## ClusteredRotamer 0 11 6 / 52 = 0.11538 0.02433 ## ReduceBreak 0 25 18 / 202 = 0.08911 0.11071 ## CloseGap 0 17 12 / 153 = 0.07843 0.05004 ## HealGap 0 1 0 / 97 = 0.00000 0.00000 ## MoveGap 1 52 32 / 234 = 0.13675 0.17502 ## ReduceConstraint 0 9 4 / 139 = 0.02878 0.03912 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 22 13 / 486 = 0.02675 0.04967 ## InsertFragment 0 20 10 / 134 = 0.07463 0.04253 ## TwoFragment 0 0 1 / 133 = 0.00752 0.01579 ## CrossOver 1 10 0 / 70 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 108 = 0.00926 0.00405 ## ReduceClash 0 9 5 / 124 = 0.04032 0.01484 # generation 24: best score out of 20: T0287.try5 208.75615 cost/residue, 246 clashes 0.20310 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 6 = 0.16667 0.00272 ## JiggleSubtree 0 6 1 / 13 = 0.07692 0.00620 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 31 = 0.00000 0.00000 ## OptSegment 0 1 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 1 16 5 / 30 = 0.16667 0.02704 ## TweakPsiSubtree 0 11 4 / 18 = 0.22222 0.00022 ## TweakPsiSegment 0 19 13 / 32 = 0.40625 0.01928 ## TweakPsiPhiSubtree 2 16 9 / 24 = 0.37500 0.01053 ## TweakPsiPhiSegment 1 19 6 / 27 = 0.22222 0.01863 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 22 9 / 52 = 0.17308 0.03976 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 11 1 / 25 = 0.04000 0.00885 ## ClashingRotamer 0 1 1 / 32 = 0.03125 0.00510 ## ClusteredRotamer 0 11 6 / 55 = 0.10909 0.02300 ## ReduceBreak 0 26 19 / 212 = 0.08962 0.10637 ## CloseGap 0 17 12 / 157 = 0.07643 0.04876 ## HealGap 0 1 0 / 98 = 0.00000 0.00000 ## MoveGap 1 52 32 / 246 = 0.13008 0.16649 ## ReduceConstraint 0 9 4 / 144 = 0.02778 0.03776 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 23 13 / 500 = 0.02600 0.04828 ## InsertFragment 0 22 10 / 146 = 0.06849 0.03903 ## TwoFragment 0 0 1 / 140 = 0.00714 0.01500 ## CrossOver 1 10 0 / 72 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 112 = 0.00893 0.00391 ## ReduceClash 0 9 5 / 131 = 0.03817 0.01405 # generation 25: best score out of 20: T0287.try5 208.69623 cost/residue, 248 clashes 0.20460 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 6 = 0.16667 0.00272 ## JiggleSubtree 0 6 1 / 13 = 0.07692 0.00620 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 32 = 0.00000 0.00000 ## OptSegment 0 1 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 2 19 6 / 34 = 0.17647 0.02386 ## TweakPsiSubtree 0 11 4 / 18 = 0.22222 0.00022 ## TweakPsiSegment 0 21 15 / 35 = 0.42857 0.01804 ## TweakPsiPhiSubtree 2 18 10 / 28 = 0.35714 0.01072 ## TweakPsiPhiSegment 1 22 8 / 31 = 0.25806 0.01795 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 22 9 / 55 = 0.16364 0.03759 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 11 1 / 25 = 0.04000 0.00885 ## ClashingRotamer 0 1 1 / 34 = 0.02941 0.00480 ## ClusteredRotamer 1 11 6 / 58 = 0.10345 0.02181 ## ReduceBreak 0 27 20 / 224 = 0.08929 0.10157 ## CloseGap 0 17 12 / 164 = 0.07317 0.04668 ## HealGap 0 1 0 / 102 = 0.00000 0.00000 ## MoveGap 1 52 32 / 257 = 0.12451 0.15936 ## ReduceConstraint 0 9 4 / 147 = 0.02721 0.03699 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 23 13 / 515 = 0.02524 0.04687 ## InsertFragment 0 24 11 / 159 = 0.06918 0.03622 ## TwoFragment 0 0 1 / 141 = 0.00709 0.01489 ## CrossOver 1 10 0 / 72 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 117 = 0.00855 0.00374 ## ReduceClash 0 9 5 / 135 = 0.03704 0.01363 # Closing gap before 194 # generation 26: best score out of 20: T0287.try5 208.02275 cost/residue, 253 clashes 0.19572 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 6 = 0.16667 0.00272 ## JiggleSubtree 0 6 1 / 14 = 0.07143 0.00575 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 2 23 6 / 40 = 0.15000 0.02028 ## TweakPsiSubtree 0 12 5 / 19 = 0.26316 0.00082 ## TweakPsiSegment 0 21 15 / 35 = 0.42857 0.01804 ## TweakPsiPhiSubtree 2 19 11 / 31 = 0.35484 0.01021 ## TweakPsiPhiSegment 1 23 9 / 33 = 0.27273 0.01692 ## TweakHbondSubtree 0 1 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 22 9 / 55 = 0.16364 0.03759 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 12 2 / 28 = 0.07143 0.01957 ## ClashingRotamer 0 1 1 / 36 = 0.02778 0.00453 ## ClusteredRotamer 1 11 6 / 59 = 0.10169 0.02144 ## ReduceBreak 1 29 22 / 235 = 0.09362 0.10000 ## CloseGap 0 18 13 / 169 = 0.07692 0.04534 ## HealGap 0 1 0 / 106 = 0.00000 0.00000 ## MoveGap 1 52 32 / 269 = 0.11896 0.15225 ## ReduceConstraint 0 9 4 / 156 = 0.02564 0.03485 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 23 13 / 531 = 0.02448 0.04546 ## InsertFragment 0 25 11 / 164 = 0.06707 0.03512 ## TwoFragment 0 0 1 / 148 = 0.00676 0.01419 ## CrossOver 1 10 0 / 74 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 120 = 0.00833 0.00365 ## ReduceClash 0 9 5 / 138 = 0.03623 0.01333 # generation 27: best score out of 20: T0287.try5 208.00996 cost/residue, 253 clashes 0.19572 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 6 = 0.16667 0.00272 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00474 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 2 24 6 / 43 = 0.13953 0.01887 ## TweakPsiSubtree 0 12 6 / 21 = 0.28571 0.00074 ## TweakPsiSegment 0 22 16 / 36 = 0.44444 0.01756 ## TweakPsiPhiSubtree 2 19 12 / 35 = 0.34286 0.00930 ## TweakPsiPhiSegment 1 25 9 / 36 = 0.25000 0.01551 ## TweakHbondSubtree 0 2 0 / 5 = 0.00000 0.00000 ## TweakHbondSegment 0 24 9 / 57 = 0.15789 0.03627 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 17 6 / 38 = 0.15789 0.02635 ## ClashingRotamer 0 1 1 / 39 = 0.02564 0.00418 ## ClusteredRotamer 1 12 7 / 63 = 0.11111 0.02028 ## ReduceBreak 1 29 22 / 243 = 0.09053 0.09671 ## CloseGap 0 18 13 / 173 = 0.07514 0.04430 ## HealGap 0 1 0 / 108 = 0.00000 0.00000 ## MoveGap 1 52 32 / 280 = 0.11429 0.14627 ## ReduceConstraint 0 9 4 / 157 = 0.02548 0.03463 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 24 14 / 547 = 0.02559 0.04440 ## InsertFragment 0 25 11 / 174 = 0.06322 0.03310 ## TwoFragment 0 0 1 / 152 = 0.00658 0.01382 ## CrossOver 1 10 0 / 76 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 125 = 0.00800 0.00350 ## ReduceClash 0 9 5 / 138 = 0.03623 0.01333 # generation 28: best score out of 20: T0287.try5 207.94757 cost/residue, 252 clashes 0.19663 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 7 = 0.14286 0.00233 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00474 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 3 25 7 / 45 = 0.15556 0.02326 ## TweakPsiSubtree 0 12 6 / 21 = 0.28571 0.00074 ## TweakPsiSegment 0 25 17 / 40 = 0.42500 0.01583 ## TweakPsiPhiSubtree 3 19 12 / 35 = 0.34286 0.00930 ## TweakPsiPhiSegment 1 27 9 / 38 = 0.23684 0.01470 ## TweakHbondSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 25 9 / 59 = 0.15254 0.03504 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 20 7 / 46 = 0.15217 0.02260 ## ClashingRotamer 0 1 1 / 39 = 0.02564 0.00418 ## ClusteredRotamer 1 12 7 / 66 = 0.10606 0.01936 ## ReduceBreak 1 30 23 / 252 = 0.09127 0.09351 ## CloseGap 0 18 13 / 181 = 0.07182 0.04234 ## HealGap 0 1 0 / 113 = 0.00000 0.00000 ## MoveGap 1 52 32 / 297 = 0.10774 0.13790 ## ReduceConstraint 0 9 4 / 161 = 0.02484 0.03377 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 562 = 0.02491 0.04321 ## InsertFragment 0 25 11 / 177 = 0.06215 0.03254 ## TwoFragment 0 0 1 / 155 = 0.00645 0.01355 ## CrossOver 2 10 0 / 77 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 129 = 0.00775 0.00339 ## ReduceClash 0 9 5 / 145 = 0.03448 0.01269 # generation 29: best score out of 20: T0287.try5 207.71124 cost/residue, 235 clashes 0.14988 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 7 = 0.14286 0.00233 ## JiggleSubtree 0 6 1 / 17 = 0.05882 0.00474 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 4 26 8 / 47 = 0.17021 0.02227 ## TweakPsiSubtree 0 13 7 / 22 = 0.31818 0.00153 ## TweakPsiSegment 0 25 17 / 40 = 0.42500 0.01583 ## TweakPsiPhiSubtree 3 19 12 / 39 = 0.30769 0.00835 ## TweakPsiPhiSegment 1 27 9 / 38 = 0.23684 0.01470 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 28 11 / 63 = 0.17460 0.03463 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 4 1 / 11 = 0.09091 0.00008 ## OneRotamer 0 23 8 / 51 = 0.15686 0.02115 ## ClashingRotamer 0 1 1 / 41 = 0.02439 0.00398 ## ClusteredRotamer 1 12 7 / 71 = 0.09859 0.01800 ## ReduceBreak 1 31 23 / 256 = 0.08984 0.09204 ## CloseGap 0 18 13 / 190 = 0.06842 0.04033 ## HealGap 0 1 0 / 116 = 0.00000 0.00000 ## MoveGap 1 54 34 / 309 = 0.11003 0.13486 ## ReduceConstraint 0 9 4 / 162 = 0.02469 0.03356 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 583 = 0.02401 0.04166 ## InsertFragment 0 26 12 / 187 = 0.06417 0.03241 ## TwoFragment 0 0 1 / 160 = 0.00625 0.01312 ## CrossOver 2 10 0 / 78 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 131 = 0.00763 0.00334 ## ReduceClash 0 10 5 / 152 = 0.03289 0.01210 # Closing gap before 140 without wiggling. # generation 30: best score out of 20: T0287.try5 207.30814 cost/residue, 251 clashes 0.19797 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 8 = 0.12500 0.00204 ## JiggleSubtree 0 6 1 / 18 = 0.05556 0.00447 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 4 28 10 / 49 = 0.20408 0.03057 ## TweakPsiSubtree 0 16 8 / 25 = 0.32000 0.00142 ## TweakPsiSegment 0 25 18 / 43 = 0.41860 0.01473 ## TweakPsiPhiSubtree 3 21 14 / 42 = 0.33333 0.01576 ## TweakPsiPhiSegment 1 30 11 / 42 = 0.26190 0.01364 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 29 12 / 67 = 0.17910 0.03312 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 2 / 12 = 0.16667 0.00108 ## OneRotamer 0 25 10 / 58 = 0.17241 0.02040 ## ClashingRotamer 0 1 1 / 42 = 0.02381 0.00388 ## ClusteredRotamer 1 12 7 / 74 = 0.09459 0.01727 ## ReduceBreak 1 31 23 / 263 = 0.08745 0.08959 ## CloseGap 0 18 14 / 194 = 0.07216 0.03969 ## HealGap 0 1 0 / 120 = 0.00000 0.00000 ## MoveGap 1 54 34 / 321 = 0.10592 0.12982 ## ReduceConstraint 0 9 4 / 165 = 0.02424 0.03295 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 594 = 0.02357 0.04089 ## InsertFragment 0 27 13 / 198 = 0.06566 0.03133 ## TwoFragment 0 0 1 / 164 = 0.00610 0.01280 ## CrossOver 2 10 0 / 79 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 136 = 0.00735 0.00322 ## ReduceClash 0 10 5 / 154 = 0.03247 0.01195 # Closing gap before 62 without wiggling. # generation 31: best score out of 20: T0287.try5 207.27213 cost/residue, 250 clashes 0.19797 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 9 = 0.11111 0.00182 ## JiggleSubtree 0 6 1 / 21 = 0.04762 0.00384 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 36 = 0.00000 0.00000 ## OptSegment 0 1 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 4 31 10 / 55 = 0.18182 0.02723 ## TweakPsiSubtree 0 16 8 / 25 = 0.32000 0.00142 ## TweakPsiSegment 0 26 20 / 46 = 0.43478 0.01384 ## TweakPsiPhiSubtree 3 25 17 / 49 = 0.34694 0.01478 ## TweakPsiPhiSegment 1 32 13 / 45 = 0.28889 0.01553 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 30 12 / 69 = 0.17391 0.03216 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 2 / 12 = 0.16667 0.00108 ## OneRotamer 0 26 10 / 62 = 0.16129 0.01909 ## ClashingRotamer 0 1 1 / 43 = 0.02326 0.00379 ## ClusteredRotamer 2 12 7 / 77 = 0.09091 0.01659 ## ReduceBreak 1 31 23 / 271 = 0.08487 0.08695 ## CloseGap 0 19 14 / 205 = 0.06829 0.03756 ## HealGap 0 1 0 / 124 = 0.00000 0.00000 ## MoveGap 1 54 34 / 327 = 0.10398 0.12743 ## ReduceConstraint 0 9 4 / 170 = 0.02353 0.03198 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 610 = 0.02295 0.03981 ## InsertFragment 0 27 13 / 201 = 0.06468 0.03086 ## TwoFragment 0 0 1 / 169 = 0.00592 0.01243 ## CrossOver 2 10 0 / 79 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 138 = 0.00725 0.00317 ## ReduceClash 0 10 5 / 157 = 0.03185 0.01172 # generation 32: best score out of 20: T0287.try5 207.27213 cost/residue, 250 clashes 0.19797 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 10 = 0.10000 0.00163 ## JiggleSubtree 0 6 1 / 21 = 0.04762 0.00384 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 37 = 0.00000 0.00000 ## OptSegment 0 1 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 4 33 10 / 59 = 0.16949 0.02539 ## TweakPsiSubtree 0 16 8 / 27 = 0.29630 0.00132 ## TweakPsiSegment 0 28 22 / 49 = 0.44898 0.01826 ## TweakPsiPhiSubtree 3 27 18 / 51 = 0.35294 0.01481 ## TweakPsiPhiSegment 2 34 13 / 47 = 0.27660 0.01487 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 32 12 / 72 = 0.16667 0.03082 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 2 / 14 = 0.14286 0.00093 ## OneRotamer 0 28 12 / 66 = 0.18182 0.02050 ## ClashingRotamer 0 1 1 / 44 = 0.02273 0.00371 ## ClusteredRotamer 2 12 7 / 80 = 0.08750 0.01597 ## ReduceBreak 1 31 23 / 279 = 0.08244 0.08446 ## CloseGap 0 19 14 / 216 = 0.06481 0.03565 ## HealGap 0 1 0 / 128 = 0.00000 0.00000 ## MoveGap 1 55 34 / 336 = 0.10119 0.12402 ## ReduceConstraint 0 9 4 / 174 = 0.02299 0.03125 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 628 = 0.02229 0.03867 ## InsertFragment 0 27 13 / 208 = 0.06250 0.02982 ## TwoFragment 0 0 1 / 171 = 0.00585 0.01228 ## CrossOver 2 10 0 / 80 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 140 = 0.00714 0.00313 ## ReduceClash 0 10 5 / 162 = 0.03086 0.01136 # generation 33: best score out of 20: T0287.try5 207.05399 cost/residue, 244 clashes 0.19869 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 6 1 / 21 = 0.04762 0.00384 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 37 = 0.00000 0.00000 ## OptSegment 0 1 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 4 35 11 / 63 = 0.17460 0.02411 ## TweakPsiSubtree 0 17 9 / 28 = 0.32143 0.00156 ## TweakPsiSegment 0 31 25 / 57 = 0.43860 0.01590 ## TweakPsiPhiSubtree 3 30 22 / 55 = 0.40000 0.01880 ## TweakPsiPhiSegment 2 34 14 / 50 = 0.28000 0.01490 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 33 13 / 76 = 0.17105 0.03098 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 2 / 14 = 0.14286 0.00093 ## OneRotamer 0 29 13 / 76 = 0.17105 0.02140 ## ClashingRotamer 0 1 1 / 46 = 0.02174 0.00355 ## ClusteredRotamer 2 12 7 / 81 = 0.08642 0.01578 ## ReduceBreak 1 31 23 / 289 = 0.07958 0.08153 ## CloseGap 0 19 14 / 218 = 0.06422 0.03532 ## HealGap 0 2 1 / 133 = 0.00752 0.00028 ## MoveGap 1 55 34 / 342 = 0.09942 0.12184 ## ReduceConstraint 0 9 4 / 180 = 0.02222 0.03021 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 641 = 0.02184 0.03789 ## InsertFragment 0 27 13 / 214 = 0.06075 0.02899 ## TwoFragment 0 0 1 / 176 = 0.00568 0.01193 ## CrossOver 2 10 0 / 82 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 142 = 0.00704 0.00308 ## ReduceClash 0 10 5 / 165 = 0.03030 0.01115 # generation 34: best score out of 20: T0287.try5 206.82361 cost/residue, 243 clashes 0.19921 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 7 2 / 22 = 0.09091 0.00586 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 37 = 0.00000 0.00000 ## OptSegment 0 1 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 4 37 11 / 69 = 0.15942 0.02201 ## TweakPsiSubtree 0 17 10 / 29 = 0.34483 0.00159 ## TweakPsiSegment 0 33 25 / 60 = 0.41667 0.01510 ## TweakPsiPhiSubtree 4 32 24 / 62 = 0.38710 0.01753 ## TweakPsiPhiSegment 2 36 14 / 53 = 0.26415 0.01406 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 35 14 / 79 = 0.17722 0.03272 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 2 / 15 = 0.13333 0.00087 ## OneRotamer 0 29 13 / 77 = 0.16883 0.02113 ## ClashingRotamer 0 1 1 / 46 = 0.02174 0.00355 ## ClusteredRotamer 2 12 7 / 83 = 0.08434 0.01540 ## ReduceBreak 1 31 23 / 298 = 0.07718 0.07907 ## CloseGap 0 19 14 / 222 = 0.06306 0.03468 ## HealGap 0 2 1 / 139 = 0.00719 0.00027 ## MoveGap 1 56 34 / 350 = 0.09714 0.11906 ## ReduceConstraint 0 9 4 / 184 = 0.02174 0.02955 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 653 = 0.02144 0.03719 ## InsertFragment 0 27 13 / 222 = 0.05856 0.02794 ## TwoFragment 0 0 1 / 180 = 0.00556 0.01167 ## CrossOver 2 10 0 / 83 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 148 = 0.00676 0.00296 ## ReduceClash 0 10 5 / 169 = 0.02959 0.01089 # generation 35: best score out of 20: T0287.try5 206.62218 cost/residue, 243 clashes 0.20112 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 8 3 / 24 = 0.12500 0.01387 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 37 = 0.00000 0.00000 ## OptSegment 0 1 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 4 39 11 / 72 = 0.15278 0.02110 ## TweakPsiSubtree 0 18 10 / 30 = 0.33333 0.00154 ## TweakPsiSegment 0 34 25 / 63 = 0.39683 0.01438 ## TweakPsiPhiSubtree 5 34 25 / 68 = 0.36765 0.01894 ## TweakPsiPhiSegment 2 38 15 / 56 = 0.26786 0.01353 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 35 14 / 82 = 0.17073 0.03152 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 7 3 / 17 = 0.17647 0.00121 ## OneRotamer 0 30 14 / 82 = 0.17073 0.01985 ## ClashingRotamer 0 1 1 / 48 = 0.02083 0.00340 ## ClusteredRotamer 2 12 7 / 85 = 0.08235 0.01503 ## ReduceBreak 1 31 23 / 306 = 0.07516 0.07700 ## CloseGap 0 19 14 / 227 = 0.06167 0.03392 ## HealGap 0 2 1 / 142 = 0.00704 0.00026 ## MoveGap 1 56 34 / 359 = 0.09471 0.11607 ## ReduceConstraint 0 9 4 / 187 = 0.02139 0.02908 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 675 = 0.02074 0.03598 ## InsertFragment 0 27 13 / 227 = 0.05727 0.02733 ## TwoFragment 0 0 1 / 185 = 0.00541 0.01135 ## CrossOver 2 10 0 / 83 = 0.00000 0.00000 ## CrossAndInsert 4 2 1 / 150 = 0.00667 0.00292 ## ReduceClash 0 10 5 / 172 = 0.02907 0.01070 # generation 36: best score out of 20: T0287.try5 206.56100 cost/residue, 237 clashes 0.19752 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 9 3 / 30 = 0.10000 0.01110 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 37 = 0.00000 0.00000 ## OptSegment 0 1 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 4 42 11 / 77 = 0.14286 0.01973 ## TweakPsiSubtree 0 18 10 / 31 = 0.32258 0.00149 ## TweakPsiSegment 0 36 26 / 65 = 0.40000 0.01394 ## TweakPsiPhiSubtree 7 35 25 / 72 = 0.34722 0.01789 ## TweakPsiPhiSegment 2 40 16 / 60 = 0.26667 0.01287 ## TweakHbondSubtree 0 3 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 36 14 / 90 = 0.15556 0.02872 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 7 3 / 17 = 0.17647 0.00121 ## OneRotamer 0 30 14 / 86 = 0.16279 0.01893 ## ClashingRotamer 0 1 1 / 49 = 0.02041 0.00333 ## ClusteredRotamer 2 12 7 / 89 = 0.07865 0.01436 ## ReduceBreak 1 32 23 / 313 = 0.07348 0.07528 ## CloseGap 0 19 14 / 233 = 0.06009 0.03305 ## HealGap 0 2 1 / 144 = 0.00694 0.00026 ## MoveGap 1 56 34 / 367 = 0.09264 0.11354 ## ReduceConstraint 0 9 4 / 193 = 0.02073 0.02817 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 686 = 0.02041 0.03540 ## InsertFragment 0 27 13 / 231 = 0.05628 0.02685 ## TwoFragment 0 0 1 / 192 = 0.00521 0.01094 ## CrossOver 2 11 1 / 86 = 0.01163 0.00071 ## CrossAndInsert 4 2 1 / 151 = 0.00662 0.00290 ## ReduceClash 0 10 5 / 176 = 0.02841 0.01045 # generation 37: best score out of 20: T0287.try5 206.38373 cost/residue, 237 clashes 0.19738 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 10 5 / 35 = 0.14286 0.01027 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 38 = 0.00000 0.00000 ## OptSegment 0 1 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 4 42 11 / 78 = 0.14103 0.01947 ## TweakPsiSubtree 0 20 12 / 33 = 0.36364 0.00141 ## TweakPsiSegment 0 41 29 / 70 = 0.41429 0.01563 ## TweakPsiPhiSubtree 7 35 25 / 72 = 0.34722 0.01789 ## TweakPsiPhiSegment 2 44 18 / 65 = 0.27692 0.01259 ## TweakHbondSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 37 15 / 97 = 0.15464 0.02681 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 7 3 / 22 = 0.13636 0.00094 ## OneRotamer 0 32 14 / 93 = 0.15054 0.01750 ## ClashingRotamer 0 1 1 / 50 = 0.02000 0.00326 ## ClusteredRotamer 2 12 7 / 90 = 0.07778 0.01420 ## ReduceBreak 1 33 23 / 325 = 0.07077 0.07250 ## CloseGap 0 19 14 / 240 = 0.05833 0.03208 ## HealGap 0 2 1 / 147 = 0.00680 0.00026 ## MoveGap 1 56 34 / 371 = 0.09164 0.11232 ## ReduceConstraint 0 9 4 / 195 = 0.02051 0.02788 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 700 = 0.02000 0.03469 ## InsertFragment 0 27 13 / 236 = 0.05508 0.02629 ## TwoFragment 0 0 1 / 195 = 0.00513 0.01077 ## CrossOver 2 11 1 / 87 = 0.01149 0.00070 ## CrossAndInsert 4 2 1 / 153 = 0.00654 0.00286 ## ReduceClash 0 10 5 / 179 = 0.02793 0.01028 # generation 38: best score out of 20: T0287.try5 206.25810 cost/residue, 234 clashes 0.20364 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 12 7 / 38 = 0.18421 0.02311 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 38 = 0.00000 0.00000 ## OptSegment 0 1 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 4 44 11 / 80 = 0.13750 0.01899 ## TweakPsiSubtree 0 21 12 / 36 = 0.33333 0.00129 ## TweakPsiSegment 0 43 30 / 74 = 0.40541 0.01480 ## TweakPsiPhiSubtree 8 35 26 / 76 = 0.34211 0.01697 ## TweakPsiPhiSegment 2 45 18 / 70 = 0.25714 0.01169 ## TweakHbondSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 38 16 / 99 = 0.16162 0.02717 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 7 3 / 22 = 0.13636 0.00094 ## OneRotamer 0 33 15 / 99 = 0.15152 0.01698 ## ClashingRotamer 0 1 1 / 50 = 0.02000 0.00326 ## ClusteredRotamer 2 12 7 / 91 = 0.07692 0.01404 ## ReduceBreak 1 33 23 / 333 = 0.06907 0.07076 ## CloseGap 0 19 14 / 242 = 0.05785 0.03182 ## HealGap 0 2 1 / 151 = 0.00662 0.00025 ## MoveGap 1 56 34 / 380 = 0.08947 0.10966 ## ReduceConstraint 0 9 4 / 198 = 0.02020 0.02746 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 713 = 0.01964 0.03406 ## InsertFragment 0 27 13 / 248 = 0.05242 0.02501 ## TwoFragment 0 0 1 / 198 = 0.00505 0.01061 ## CrossOver 2 13 2 / 89 = 0.02247 0.00101 ## CrossAndInsert 4 2 1 / 160 = 0.00625 0.00274 ## ReduceClash 0 10 5 / 184 = 0.02717 0.01000 # generation 39: best score out of 20: T0287.try5 205.95294 cost/residue, 237 clashes 0.19741 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 13 9 / 49 = 0.18367 0.02064 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 38 = 0.00000 0.00000 ## OptSegment 0 1 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 7 = 0.00000 0.00000 ## TweakPhiSegment 4 47 13 / 86 = 0.15116 0.01850 ## TweakPsiSubtree 0 23 13 / 40 = 0.32500 0.01597 ## TweakPsiSegment 0 45 30 / 80 = 0.37500 0.01369 ## TweakPsiPhiSubtree 8 37 27 / 79 = 0.34177 0.02056 ## TweakPsiPhiSegment 2 46 19 / 71 = 0.26761 0.01157 ## TweakHbondSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 41 17 / 104 = 0.16346 0.02594 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 7 3 / 22 = 0.13636 0.00094 ## OneRotamer 0 33 15 / 104 = 0.14423 0.01617 ## ClashingRotamer 0 1 1 / 51 = 0.01961 0.00320 ## ClusteredRotamer 2 12 7 / 91 = 0.07692 0.01404 ## ReduceBreak 1 34 24 / 338 = 0.07101 0.06975 ## CloseGap 0 19 14 / 247 = 0.05668 0.03117 ## HealGap 0 2 1 / 154 = 0.00649 0.00024 ## MoveGap 1 56 34 / 390 = 0.08718 0.10685 ## ReduceConstraint 0 9 4 / 200 = 0.02000 0.02719 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 728 = 0.01923 0.03336 ## InsertFragment 0 27 13 / 259 = 0.05019 0.02395 ## TwoFragment 0 0 1 / 199 = 0.00503 0.01055 ## CrossOver 2 13 2 / 89 = 0.02247 0.00101 ## CrossAndInsert 4 2 1 / 161 = 0.00621 0.00272 ## ReduceClash 0 10 5 / 187 = 0.02674 0.00984 # generation 40: best score out of 20: T0287.try5 205.43144 cost/residue, 231 clashes 0.19786 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 14 10 / 51 = 0.19608 0.02077 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 38 = 0.00000 0.00000 ## OptSegment 0 1 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 4 50 14 / 90 = 0.15556 0.01879 ## TweakPsiSubtree 0 26 15 / 48 = 0.31250 0.02497 ## TweakPsiSegment 0 46 32 / 83 = 0.38554 0.01571 ## TweakPsiPhiSubtree 8 38 27 / 82 = 0.32927 0.01981 ## TweakPsiPhiSegment 2 46 19 / 71 = 0.26761 0.01157 ## TweakHbondSubtree 0 3 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 42 17 / 109 = 0.15596 0.02475 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 23 = 0.13043 0.00090 ## OneRotamer 0 34 15 / 109 = 0.13761 0.01543 ## ClashingRotamer 0 1 1 / 51 = 0.01961 0.00320 ## ClusteredRotamer 2 12 7 / 94 = 0.07447 0.01359 ## ReduceBreak 1 34 24 / 346 = 0.06936 0.06814 ## CloseGap 0 19 14 / 249 = 0.05622 0.03092 ## HealGap 0 2 1 / 160 = 0.00625 0.00024 ## MoveGap 1 56 34 / 398 = 0.08543 0.10470 ## ReduceConstraint 0 9 4 / 204 = 0.01961 0.02665 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 743 = 0.01884 0.03269 ## InsertFragment 0 27 13 / 263 = 0.04943 0.02359 ## TwoFragment 0 0 1 / 202 = 0.00495 0.01040 ## CrossOver 2 13 2 / 90 = 0.02222 0.00100 ## CrossAndInsert 4 2 1 / 167 = 0.00599 0.00262 ## ReduceClash 0 10 5 / 194 = 0.02577 0.00948 # Closing gap before 62 # generation 41: best score out of 20: T0287.try5 205.38446 cost/residue, 232 clashes 0.19510 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 18 12 / 59 = 0.20339 0.02594 ## JiggleSegment 0 2 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 39 = 0.00000 0.00000 ## OptSegment 0 1 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 4 51 15 / 93 = 0.16129 0.01818 ## TweakPsiSubtree 0 27 17 / 59 = 0.28814 0.02041 ## TweakPsiSegment 0 49 33 / 88 = 0.37500 0.01801 ## TweakPsiPhiSubtree 9 39 29 / 87 = 0.33333 0.01935 ## TweakPsiPhiSegment 2 47 20 / 74 = 0.27027 0.01130 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 42 17 / 109 = 0.15596 0.02475 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 23 = 0.13043 0.00090 ## OneRotamer 0 36 16 / 114 = 0.14035 0.01515 ## ClashingRotamer 0 1 1 / 52 = 0.01923 0.00314 ## ClusteredRotamer 2 13 8 / 96 = 0.08333 0.01363 ## ReduceBreak 1 34 24 / 351 = 0.06838 0.06717 ## CloseGap 0 20 14 / 254 = 0.05512 0.03031 ## HealGap 0 2 1 / 161 = 0.00621 0.00023 ## MoveGap 1 56 34 / 402 = 0.08458 0.10366 ## ReduceConstraint 0 9 4 / 205 = 0.01951 0.02652 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 756 = 0.01852 0.03212 ## InsertFragment 0 27 13 / 270 = 0.04815 0.02298 ## TwoFragment 0 0 1 / 206 = 0.00485 0.01019 ## CrossOver 2 13 2 / 96 = 0.02083 0.00094 ## CrossAndInsert 4 2 1 / 171 = 0.00585 0.00256 ## ReduceClash 0 10 5 / 197 = 0.02538 0.00934 # generation 42: best score out of 20: T0287.try5 205.38446 cost/residue, 232 clashes 0.19510 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 18 12 / 67 = 0.17910 0.02284 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 39 = 0.00000 0.00000 ## OptSegment 0 1 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 54 15 / 96 = 0.15625 0.01761 ## TweakPsiSubtree 0 29 19 / 66 = 0.28788 0.01844 ## TweakPsiSegment 0 52 34 / 95 = 0.35789 0.01676 ## TweakPsiPhiSubtree 9 39 29 / 87 = 0.33333 0.01935 ## TweakPsiPhiSegment 2 49 20 / 77 = 0.25974 0.01086 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 42 17 / 109 = 0.15596 0.02475 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 23 = 0.13043 0.00090 ## OneRotamer 0 38 16 / 118 = 0.13559 0.01464 ## ClashingRotamer 0 1 1 / 54 = 0.01852 0.00302 ## ClusteredRotamer 2 13 8 / 99 = 0.08081 0.01322 ## ReduceBreak 1 34 24 / 354 = 0.06780 0.06660 ## CloseGap 0 20 14 / 259 = 0.05405 0.02973 ## HealGap 0 2 1 / 163 = 0.00613 0.00023 ## MoveGap 1 57 34 / 410 = 0.08293 0.10164 ## ReduceConstraint 0 9 4 / 206 = 0.01942 0.02639 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 776 = 0.01804 0.03130 ## InsertFragment 0 27 13 / 273 = 0.04762 0.02272 ## TwoFragment 0 0 1 / 209 = 0.00478 0.01005 ## CrossOver 2 13 2 / 96 = 0.02083 0.00094 ## CrossAndInsert 4 2 1 / 180 = 0.00556 0.00243 ## ReduceClash 0 10 5 / 201 = 0.02488 0.00915 # generation 43: best score out of 20: T0287.try5 205.04169 cost/residue, 211 clashes 0.19654 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 0 19 14 / 73 = 0.19178 0.02251 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 39 = 0.00000 0.00000 ## OptSegment 0 1 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 54 15 / 97 = 0.15464 0.01743 ## TweakPsiSubtree 0 31 20 / 70 = 0.28571 0.01746 ## TweakPsiSegment 1 52 35 / 101 = 0.34653 0.01577 ## TweakPsiPhiSubtree 9 41 32 / 91 = 0.35165 0.01937 ## TweakPsiPhiSegment 3 53 23 / 83 = 0.27711 0.01242 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 43 17 / 114 = 0.14912 0.02367 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 23 = 0.13043 0.00090 ## OneRotamer 0 39 17 / 121 = 0.14050 0.01465 ## ClashingRotamer 0 1 1 / 55 = 0.01818 0.00296 ## ClusteredRotamer 2 13 8 / 100 = 0.08000 0.01308 ## ReduceBreak 1 34 24 / 361 = 0.06648 0.06531 ## CloseGap 0 20 14 / 262 = 0.05344 0.02939 ## HealGap 0 2 2 / 168 = 0.01190 0.00025 ## MoveGap 1 57 34 / 418 = 0.08134 0.09969 ## ReduceConstraint 0 9 4 / 209 = 0.01914 0.02602 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 790 = 0.01772 0.03074 ## InsertFragment 0 27 13 / 280 = 0.04643 0.02215 ## TwoFragment 0 0 1 / 213 = 0.00469 0.00986 ## CrossOver 2 13 2 / 101 = 0.01980 0.00089 ## CrossAndInsert 4 2 1 / 181 = 0.00552 0.00242 ## ReduceClash 0 11 6 / 205 = 0.02927 0.01069 # generation 44: best score out of 20: T0287.try5 204.73004 cost/residue, 210 clashes 0.19785 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 1 20 14 / 86 = 0.16279 0.01911 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 57 16 / 101 = 0.15842 0.01674 ## TweakPsiSubtree 0 32 23 / 78 = 0.29487 0.01576 ## TweakPsiSegment 1 55 37 / 106 = 0.34906 0.01504 ## TweakPsiPhiSubtree 9 43 33 / 98 = 0.33673 0.01896 ## TweakPsiPhiSegment 3 57 27 / 90 = 0.30000 0.01579 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 44 18 / 115 = 0.15652 0.02365 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 23 = 0.13043 0.00090 ## OneRotamer 0 39 17 / 125 = 0.13600 0.01418 ## ClashingRotamer 0 1 1 / 55 = 0.01818 0.00296 ## ClusteredRotamer 2 13 8 / 101 = 0.07921 0.01296 ## ReduceBreak 1 34 24 / 366 = 0.06557 0.06442 ## CloseGap 0 20 14 / 264 = 0.05303 0.02917 ## HealGap 0 2 2 / 170 = 0.01176 0.00025 ## MoveGap 1 57 34 / 425 = 0.08000 0.09805 ## ReduceConstraint 0 9 4 / 210 = 0.01905 0.02589 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 806 = 0.01737 0.03013 ## InsertFragment 0 27 13 / 283 = 0.04594 0.02192 ## TwoFragment 0 0 1 / 215 = 0.00465 0.00977 ## CrossOver 2 13 2 / 104 = 0.01923 0.00087 ## CrossAndInsert 4 2 1 / 185 = 0.00541 0.00237 ## ReduceClash 0 11 6 / 208 = 0.02885 0.01054 # generation 45: best score out of 20: T0287.try5 204.50697 cost/residue, 228 clashes 0.19184 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 1 21 14 / 93 = 0.15054 0.01767 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 57 16 / 102 = 0.15686 0.01658 ## TweakPsiSubtree 0 38 27 / 86 = 0.31395 0.01473 ## TweakPsiSegment 2 56 38 / 110 = 0.34545 0.01453 ## TweakPsiPhiSubtree 9 46 35 / 104 = 0.33654 0.01794 ## TweakPsiPhiSegment 4 60 29 / 97 = 0.29897 0.01653 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 44 18 / 118 = 0.15254 0.02304 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 24 = 0.12500 0.00086 ## OneRotamer 0 39 17 / 128 = 0.13281 0.01385 ## ClashingRotamer 0 1 1 / 55 = 0.01818 0.00296 ## ClusteredRotamer 2 13 8 / 102 = 0.07843 0.01283 ## ReduceBreak 1 35 25 / 376 = 0.06649 0.06458 ## CloseGap 0 20 14 / 266 = 0.05263 0.02895 ## HealGap 0 2 2 / 174 = 0.01149 0.00024 ## MoveGap 1 57 34 / 431 = 0.07889 0.09668 ## ReduceConstraint 0 9 4 / 216 = 0.01852 0.02517 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 814 = 0.01720 0.02984 ## InsertFragment 0 27 13 / 286 = 0.04545 0.02169 ## TwoFragment 0 0 1 / 221 = 0.00452 0.00950 ## CrossOver 2 13 2 / 105 = 0.01905 0.00086 ## CrossAndInsert 4 2 1 / 189 = 0.00529 0.00232 ## ReduceClash 0 11 6 / 216 = 0.02778 0.01015 # Closing gap before 184 next to short segment # generation 46: best score out of 20: T0287.try5 204.50697 cost/residue, 228 clashes 0.19184 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 1 21 14 / 99 = 0.14141 0.01660 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 58 16 / 105 = 0.15238 0.01610 ## TweakPsiSubtree 0 40 29 / 93 = 0.31183 0.01369 ## TweakPsiSegment 2 56 39 / 112 = 0.34821 0.01428 ## TweakPsiPhiSubtree 10 48 36 / 111 = 0.32432 0.01725 ## TweakPsiPhiSegment 4 67 32 / 109 = 0.29358 0.01529 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 45 18 / 120 = 0.15000 0.02266 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 24 = 0.12500 0.00086 ## OneRotamer 0 40 17 / 130 = 0.13077 0.01363 ## ClashingRotamer 0 1 1 / 56 = 0.01786 0.00291 ## ClusteredRotamer 2 13 8 / 104 = 0.07692 0.01258 ## ReduceBreak 1 35 25 / 383 = 0.06527 0.06340 ## CloseGap 0 20 14 / 270 = 0.05185 0.02852 ## HealGap 0 2 2 / 175 = 0.01143 0.00024 ## MoveGap 1 57 34 / 444 = 0.07658 0.09385 ## ReduceConstraint 0 9 4 / 217 = 0.01843 0.02506 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 825 = 0.01697 0.02944 ## InsertFragment 0 27 13 / 290 = 0.04483 0.02139 ## TwoFragment 0 0 1 / 225 = 0.00444 0.00933 ## CrossOver 2 13 2 / 107 = 0.01869 0.00084 ## CrossAndInsert 4 2 1 / 195 = 0.00513 0.00225 ## ReduceClash 0 11 6 / 218 = 0.02752 0.01005 # generation 47: best score out of 20: T0287.try5 204.47038 cost/residue, 228 clashes 0.19239 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 1 21 14 / 102 = 0.13725 0.01611 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 43 = 0.00000 0.00000 ## OptSegment 0 1 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 60 16 / 108 = 0.14815 0.01566 ## TweakPsiSubtree 0 45 31 / 101 = 0.30693 0.01262 ## TweakPsiSegment 2 56 39 / 112 = 0.34821 0.01428 ## TweakPsiPhiSubtree 10 50 38 / 117 = 0.32479 0.01686 ## TweakPsiPhiSegment 6 69 33 / 117 = 0.28205 0.01443 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 45 18 / 122 = 0.14754 0.02229 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 3 / 24 = 0.12500 0.00086 ## OneRotamer 0 42 17 / 133 = 0.12782 0.01333 ## ClashingRotamer 0 1 1 / 56 = 0.01786 0.00291 ## ClusteredRotamer 2 13 8 / 106 = 0.07547 0.01234 ## ReduceBreak 1 35 25 / 397 = 0.06297 0.06116 ## CloseGap 0 20 14 / 275 = 0.05091 0.02800 ## HealGap 0 2 2 / 176 = 0.01136 0.00024 ## MoveGap 1 57 34 / 451 = 0.07539 0.09240 ## ReduceConstraint 0 9 4 / 220 = 0.01818 0.02471 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 839 = 0.01669 0.02895 ## InsertFragment 0 27 13 / 297 = 0.04377 0.02089 ## TwoFragment 0 0 1 / 227 = 0.00441 0.00925 ## CrossOver 2 13 2 / 110 = 0.01818 0.00082 ## CrossAndInsert 4 2 1 / 195 = 0.00513 0.00225 ## ReduceClash 0 11 6 / 223 = 0.02691 0.00983 # generation 48: best score out of 20: T0287.try5 204.40311 cost/residue, 227 clashes 0.19222 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 11 = 0.09091 0.00149 ## JiggleSubtree 1 21 14 / 108 = 0.12963 0.01522 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 44 = 0.00000 0.00000 ## OptSegment 0 1 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 63 17 / 114 = 0.14912 0.01483 ## TweakPsiSubtree 0 49 35 / 110 = 0.31818 0.01229 ## TweakPsiSegment 2 58 40 / 115 = 0.34783 0.01397 ## TweakPsiPhiSubtree 10 52 39 / 120 = 0.32500 0.01659 ## TweakPsiPhiSegment 7 69 33 / 118 = 0.27966 0.01431 ## TweakHbondSubtree 0 3 0 / 9 = 0.00000 0.00000 ## TweakHbondSegment 0 45 18 / 122 = 0.14754 0.02229 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 4 / 26 = 0.15385 0.00092 ## OneRotamer 0 43 18 / 136 = 0.13235 0.01308 ## ClashingRotamer 0 1 1 / 58 = 0.01724 0.00281 ## ClusteredRotamer 2 13 8 / 110 = 0.07273 0.01190 ## ReduceBreak 1 35 25 / 408 = 0.06127 0.05951 ## CloseGap 0 20 14 / 281 = 0.04982 0.02740 ## HealGap 0 2 2 / 178 = 0.01124 0.00023 ## MoveGap 1 57 34 / 456 = 0.07456 0.09138 ## ReduceConstraint 0 9 4 / 224 = 0.01786 0.02427 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 855 = 0.01637 0.02840 ## InsertFragment 0 27 13 / 301 = 0.04319 0.02061 ## TwoFragment 0 0 1 / 230 = 0.00435 0.00913 ## CrossOver 2 13 2 / 113 = 0.01770 0.00080 ## CrossAndInsert 4 2 1 / 198 = 0.00505 0.00221 ## ReduceClash 0 11 6 / 225 = 0.02667 0.00974 # generation 49: best score out of 20: T0287.try5 204.38730 cost/residue, 228 clashes 0.19150 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 12 = 0.08333 0.00136 ## JiggleSubtree 1 21 14 / 114 = 0.12281 0.01442 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 44 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 68 20 / 122 = 0.16393 0.01418 ## TweakPsiSubtree 0 53 36 / 114 = 0.31579 0.01229 ## TweakPsiSegment 2 59 41 / 118 = 0.34746 0.01441 ## TweakPsiPhiSubtree 10 54 40 / 124 = 0.32258 0.01702 ## TweakPsiPhiSegment 7 71 36 / 125 = 0.28800 0.01376 ## TweakHbondSubtree 0 3 0 / 10 = 0.00000 0.00000 ## TweakHbondSegment 0 45 18 / 126 = 0.14286 0.02158 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 4 / 26 = 0.15385 0.00092 ## OneRotamer 0 43 18 / 146 = 0.12329 0.01218 ## ClashingRotamer 0 1 1 / 58 = 0.01724 0.00281 ## ClusteredRotamer 2 13 8 / 111 = 0.07207 0.01179 ## ReduceBreak 1 35 25 / 413 = 0.06053 0.05879 ## CloseGap 0 20 14 / 287 = 0.04878 0.02683 ## HealGap 0 2 2 / 183 = 0.01093 0.00023 ## MoveGap 1 57 34 / 459 = 0.07407 0.09079 ## ReduceConstraint 0 9 4 / 226 = 0.01770 0.02406 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 871 = 0.01607 0.02788 ## InsertFragment 0 27 13 / 304 = 0.04276 0.02041 ## TwoFragment 0 0 1 / 231 = 0.00433 0.00909 ## CrossOver 3 13 2 / 113 = 0.01770 0.00080 ## CrossAndInsert 4 2 1 / 199 = 0.00503 0.00220 ## ReduceClash 0 11 6 / 230 = 0.02609 0.00953 # generation 50: best score out of 20: T0287.try5 203.98950 cost/residue, 228 clashes 0.19325 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 12 = 0.08333 0.00136 ## JiggleSubtree 1 21 14 / 118 = 0.11864 0.01393 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 44 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 0 / 9 = 0.00000 0.00000 ## TweakPhiSegment 4 69 20 / 125 = 0.16000 0.01384 ## TweakPsiSubtree 0 56 37 / 120 = 0.30833 0.01168 ## TweakPsiSegment 2 60 42 / 121 = 0.34711 0.01406 ## TweakPsiPhiSubtree 10 58 43 / 132 = 0.32576 0.01980 ## TweakPsiPhiSegment 7 73 36 / 132 = 0.27273 0.01303 ## TweakHbondSubtree 0 3 0 / 10 = 0.00000 0.00000 ## TweakHbondSegment 0 47 19 / 130 = 0.14615 0.02316 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 8 4 / 26 = 0.15385 0.00092 ## OneRotamer 0 43 18 / 147 = 0.12245 0.01210 ## ClashingRotamer 0 1 1 / 59 = 0.01695 0.00276 ## ClusteredRotamer 2 13 8 / 112 = 0.07143 0.01168 ## ReduceBreak 1 36 26 / 421 = 0.06176 0.05775 ## CloseGap 0 20 14 / 292 = 0.04795 0.02637 ## HealGap 0 2 2 / 187 = 0.01070 0.00022 ## MoveGap 1 57 34 / 466 = 0.07296 0.08942 ## ReduceConstraint 0 9 4 / 232 = 0.01724 0.02344 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 882 = 0.01587 0.02753 ## InsertFragment 0 27 13 / 309 = 0.04207 0.02008 ## TwoFragment 0 0 1 / 236 = 0.00424 0.00890 ## CrossOver 3 13 2 / 113 = 0.01770 0.00080 ## CrossAndInsert 4 2 1 / 200 = 0.00500 0.00219 ## ReduceClash 0 11 6 / 238 = 0.02521 0.00921 # generation 51: best score out of 20: T0287.try5 203.89125 cost/residue, 229 clashes 0.19354 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 12 = 0.08333 0.00136 ## JiggleSubtree 1 21 14 / 123 = 0.11382 0.01336 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 10 = 0.10000 0.00001 ## TweakPhiSegment 4 69 20 / 125 = 0.16000 0.01384 ## TweakPsiSubtree 0 57 37 / 121 = 0.30579 0.01158 ## TweakPsiSegment 2 60 42 / 123 = 0.34146 0.01383 ## TweakPsiPhiSubtree 11 62 46 / 142 = 0.32394 0.01909 ## TweakPsiPhiSegment 8 75 37 / 137 = 0.27007 0.01415 ## TweakHbondSubtree 0 3 0 / 10 = 0.00000 0.00000 ## TweakHbondSegment 0 49 21 / 142 = 0.14789 0.02207 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 4 / 29 = 0.13793 0.00083 ## OneRotamer 0 43 18 / 149 = 0.12081 0.01194 ## ClashingRotamer 0 1 1 / 59 = 0.01695 0.00276 ## ClusteredRotamer 2 13 8 / 113 = 0.07080 0.01158 ## ReduceBreak 1 36 26 / 428 = 0.06075 0.05681 ## CloseGap 0 20 14 / 297 = 0.04714 0.02592 ## HealGap 0 2 2 / 192 = 0.01042 0.00022 ## MoveGap 1 58 35 / 474 = 0.07384 0.08856 ## ReduceConstraint 0 9 4 / 233 = 0.01717 0.02334 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 892 = 0.01570 0.02723 ## InsertFragment 0 28 14 / 316 = 0.04430 0.01979 ## TwoFragment 0 0 1 / 238 = 0.00420 0.00882 ## CrossOver 3 13 2 / 115 = 0.01739 0.00078 ## CrossAndInsert 4 2 1 / 203 = 0.00493 0.00216 ## ReduceClash 0 11 6 / 242 = 0.02479 0.00906 # generation 52: best score out of 20: T0287.try5 203.49164 cost/residue, 233 clashes 0.19487 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 13 = 0.07692 0.00126 ## JiggleSubtree 1 21 14 / 131 = 0.10687 0.01255 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 11 = 0.09091 0.00001 ## TweakPhiSegment 4 70 20 / 127 = 0.15748 0.01363 ## TweakPsiSubtree 0 60 39 / 128 = 0.30469 0.01098 ## TweakPsiSegment 2 63 46 / 130 = 0.35385 0.01350 ## TweakPsiPhiSubtree 11 64 48 / 152 = 0.31579 0.01812 ## TweakPsiPhiSegment 8 77 38 / 141 = 0.26950 0.01387 ## TweakHbondSubtree 0 3 0 / 10 = 0.00000 0.00000 ## TweakHbondSegment 0 50 22 / 146 = 0.15068 0.02420 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 4 / 29 = 0.13793 0.00083 ## OneRotamer 0 45 19 / 153 = 0.12418 0.01204 ## ClashingRotamer 0 1 1 / 60 = 0.01667 0.00272 ## ClusteredRotamer 2 13 8 / 114 = 0.07018 0.01148 ## ReduceBreak 1 36 26 / 431 = 0.06032 0.05641 ## CloseGap 0 20 14 / 298 = 0.04698 0.02584 ## HealGap 0 2 2 / 196 = 0.01020 0.00021 ## MoveGap 1 58 35 / 481 = 0.07277 0.08727 ## ReduceConstraint 0 9 4 / 235 = 0.01702 0.02314 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 905 = 0.01547 0.02684 ## InsertFragment 0 28 14 / 322 = 0.04348 0.01942 ## TwoFragment 0 0 1 / 241 = 0.00415 0.00871 ## CrossOver 3 14 2 / 118 = 0.01695 0.00076 ## CrossAndInsert 4 2 1 / 206 = 0.00485 0.00213 ## ReduceClash 0 11 6 / 245 = 0.02449 0.00895 # Closing gap before 74 next to short segment # generation 53: best score out of 20: T0287.try5 203.36554 cost/residue, 240 clashes 0.19822 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 13 = 0.07692 0.00126 ## JiggleSubtree 1 23 15 / 141 = 0.10638 0.01190 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 1 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 11 = 0.09091 0.00001 ## TweakPhiSegment 4 70 20 / 128 = 0.15625 0.01352 ## TweakPsiSubtree 0 63 41 / 133 = 0.30827 0.01066 ## TweakPsiSegment 2 64 47 / 132 = 0.35606 0.01330 ## TweakPsiPhiSubtree 12 65 49 / 155 = 0.31613 0.01789 ## TweakPsiPhiSegment 8 79 39 / 144 = 0.27083 0.01358 ## TweakHbondSubtree 0 3 0 / 10 = 0.00000 0.00000 ## TweakHbondSegment 0 56 26 / 161 = 0.16149 0.02323 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 9 4 / 29 = 0.13793 0.00083 ## OneRotamer 0 45 19 / 156 = 0.12179 0.01181 ## ClashingRotamer 0 1 1 / 64 = 0.01562 0.00255 ## ClusteredRotamer 2 13 8 / 114 = 0.07018 0.01148 ## ReduceBreak 1 36 26 / 434 = 0.05991 0.05602 ## CloseGap 0 20 14 / 302 = 0.04636 0.02550 ## HealGap 0 2 2 / 201 = 0.00995 0.00021 ## MoveGap 1 58 35 / 484 = 0.07231 0.08673 ## ReduceConstraint 0 9 4 / 236 = 0.01695 0.02304 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 918 = 0.01525 0.02646 ## InsertFragment 0 28 14 / 325 = 0.04308 0.01924 ## TwoFragment 0 0 1 / 248 = 0.00403 0.00847 ## CrossOver 3 14 2 / 120 = 0.01667 0.00075 ## CrossAndInsert 4 2 1 / 208 = 0.00481 0.00211 ## ReduceClash 0 11 6 / 252 = 0.02381 0.00870 # generation 54: best score out of 20: T0287.try5 203.23857 cost/residue, 237 clashes 0.19881 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 13 = 0.07692 0.00126 ## JiggleSubtree 1 23 15 / 143 = 0.10490 0.01173 ## JiggleSegment 0 3 1 / 16 = 0.06250 0.00053 ## OptSubtree 0 1 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 11 = 0.09091 0.00001 ## TweakPhiSegment 4 70 20 / 129 = 0.15504 0.01341 ## TweakPsiSubtree 0 66 43 / 143 = 0.30070 0.00997 ## TweakPsiSegment 2 68 51 / 140 = 0.36429 0.01298 ## TweakPsiPhiSubtree 12 65 49 / 160 = 0.30625 0.01733 ## TweakPsiPhiSegment 10 80 40 / 149 = 0.26846 0.01317 ## TweakHbondSubtree 0 3 0 / 10 = 0.00000 0.00000 ## TweakHbondSegment 0 58 27 / 169 = 0.15976 0.02288 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 10 4 / 30 = 0.13333 0.00080 ## OneRotamer 0 47 20 / 159 = 0.12579 0.01184 ## ClashingRotamer 0 1 1 / 67 = 0.01493 0.00243 ## ClusteredRotamer 2 13 8 / 115 = 0.06957 0.01138 ## ReduceBreak 1 36 26 / 439 = 0.05923 0.05538 ## CloseGap 0 20 14 / 305 = 0.04590 0.02524 ## HealGap 0 2 2 / 202 = 0.00990 0.00021 ## MoveGap 1 58 35 / 493 = 0.07099 0.08515 ## ReduceConstraint 0 9 4 / 240 = 0.01667 0.02265 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 931 = 0.01504 0.02609 ## InsertFragment 0 28 14 / 329 = 0.04255 0.01901 ## TwoFragment 0 0 1 / 251 = 0.00398 0.00837 ## CrossOver 3 14 2 / 122 = 0.01639 0.00074 ## CrossAndInsert 4 2 1 / 211 = 0.00474 0.00208 ## ReduceClash 0 12 6 / 256 = 0.02344 0.00856 # generation 55: best score out of 20: T0287.try5 203.08548 cost/residue, 238 clashes 0.19703 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 14 = 0.07143 0.00117 ## JiggleSubtree 1 23 15 / 144 = 0.10417 0.01165 ## JiggleSegment 0 3 1 / 18 = 0.05556 0.00047 ## OptSubtree 0 1 0 / 47 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 11 = 0.09091 0.00001 ## TweakPhiSegment 4 70 20 / 130 = 0.15385 0.01331 ## TweakPsiSubtree 0 69 44 / 146 = 0.30137 0.00977 ## TweakPsiSegment 2 70 53 / 146 = 0.36301 0.01247 ## TweakPsiPhiSubtree 12 68 52 / 168 = 0.30952 0.01740 ## TweakPsiPhiSegment 10 81 40 / 151 = 0.26490 0.01299 ## TweakHbondSubtree 0 4 1 / 12 = 0.08333 0.02347 ## TweakHbondSegment 0 59 28 / 177 = 0.15819 0.02203 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 5 / 31 = 0.16129 0.00131 ## OneRotamer 0 48 21 / 162 = 0.12963 0.01183 ## ClashingRotamer 0 1 1 / 69 = 0.01449 0.00236 ## ClusteredRotamer 2 13 8 / 117 = 0.06838 0.01118 ## ReduceBreak 1 36 26 / 446 = 0.05830 0.05451 ## CloseGap 0 20 14 / 305 = 0.04590 0.02524 ## HealGap 0 2 2 / 205 = 0.00976 0.00020 ## MoveGap 1 58 35 / 501 = 0.06986 0.08379 ## ReduceConstraint 0 9 4 / 242 = 0.01653 0.02247 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 946 = 0.01480 0.02567 ## InsertFragment 0 28 14 / 337 = 0.04154 0.01856 ## TwoFragment 0 0 1 / 252 = 0.00397 0.00833 ## CrossOver 3 14 2 / 125 = 0.01600 0.00072 ## CrossAndInsert 4 2 1 / 215 = 0.00465 0.00204 ## ReduceClash 0 12 6 / 261 = 0.02299 0.00840 # generation 56: best score out of 20: T0287.try5 202.85870 cost/residue, 243 clashes 0.19576 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 14 = 0.07143 0.00117 ## JiggleSubtree 1 24 16 / 145 = 0.11034 0.01318 ## JiggleSegment 0 3 1 / 18 = 0.05556 0.00047 ## OptSubtree 0 1 0 / 48 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 11 = 0.09091 0.00001 ## TweakPhiSegment 4 70 20 / 131 = 0.15267 0.01321 ## TweakPsiSubtree 0 69 45 / 148 = 0.30405 0.00964 ## TweakPsiSegment 2 71 54 / 148 = 0.36486 0.01231 ## TweakPsiPhiSubtree 12 71 53 / 174 = 0.30460 0.01848 ## TweakPsiPhiSegment 11 85 43 / 159 = 0.27044 0.01321 ## TweakHbondSubtree 1 12 8 / 42 = 0.19048 0.02611 ## TweakHbondSegment 0 59 28 / 179 = 0.15642 0.02179 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 11 5 / 31 = 0.16129 0.00131 ## OneRotamer 0 48 21 / 165 = 0.12727 0.01161 ## ClashingRotamer 0 1 1 / 69 = 0.01449 0.00236 ## ClusteredRotamer 2 13 8 / 122 = 0.06557 0.01073 ## ReduceBreak 1 36 26 / 452 = 0.05752 0.05379 ## CloseGap 0 20 14 / 307 = 0.04560 0.02508 ## HealGap 0 2 2 / 208 = 0.00962 0.00020 ## MoveGap 1 58 35 / 505 = 0.06931 0.08313 ## ReduceConstraint 0 9 4 / 246 = 0.01626 0.02210 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 954 = 0.01468 0.02546 ## InsertFragment 0 28 14 / 341 = 0.04106 0.01834 ## TwoFragment 0 0 1 / 254 = 0.00394 0.00827 ## CrossOver 3 14 2 / 127 = 0.01575 0.00071 ## CrossAndInsert 4 2 1 / 216 = 0.00463 0.00203 ## ReduceClash 0 12 6 / 264 = 0.02273 0.00830 # generation 57: best score out of 20: T0287.try5 202.16096 cost/residue, 242 clashes 0.19978 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 14 = 0.07143 0.00117 ## JiggleSubtree 1 26 18 / 152 = 0.11842 0.01751 ## JiggleSegment 0 4 2 / 21 = 0.09524 0.01753 ## OptSubtree 0 1 0 / 48 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 1 / 12 = 0.08333 0.00001 ## TweakPhiSegment 4 70 20 / 131 = 0.15267 0.01321 ## TweakPsiSubtree 0 69 46 / 150 = 0.30667 0.00951 ## TweakPsiSegment 2 75 56 / 156 = 0.35897 0.01175 ## TweakPsiPhiSubtree 12 71 56 / 184 = 0.30435 0.01802 ## TweakPsiPhiSegment 12 85 43 / 159 = 0.27044 0.01321 ## TweakHbondSubtree 1 15 9 / 49 = 0.18367 0.02353 ## TweakHbondSegment 0 62 30 / 186 = 0.16129 0.02121 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 13 7 / 34 = 0.20588 0.00146 ## OneRotamer 0 48 21 / 168 = 0.12500 0.01141 ## ClashingRotamer 0 1 1 / 71 = 0.01408 0.00230 ## ClusteredRotamer 2 13 8 / 122 = 0.06557 0.01073 ## ReduceBreak 1 36 26 / 459 = 0.05664 0.05297 ## CloseGap 0 20 14 / 311 = 0.04502 0.02476 ## HealGap 0 2 2 / 212 = 0.00943 0.00020 ## MoveGap 1 58 35 / 513 = 0.06823 0.08183 ## ReduceConstraint 0 9 4 / 247 = 0.01619 0.02201 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 966 = 0.01449 0.02514 ## InsertFragment 0 28 14 / 343 = 0.04082 0.01823 ## TwoFragment 0 0 1 / 254 = 0.00394 0.00827 ## CrossOver 3 14 2 / 128 = 0.01562 0.00070 ## CrossAndInsert 4 2 1 / 220 = 0.00455 0.00199 ## ReduceClash 0 12 6 / 266 = 0.02256 0.00824 # generation 58: best score out of 20: T0287.try5 201.84853 cost/residue, 241 clashes 0.20122 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 14 = 0.07143 0.00117 ## JiggleSubtree 1 26 18 / 161 = 0.11180 0.01653 ## JiggleSegment 0 9 5 / 42 = 0.11905 0.02947 ## OptSubtree 0 1 0 / 50 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 1 / 13 = 0.07692 0.00001 ## TweakPhiSegment 4 70 21 / 132 = 0.15909 0.01311 ## TweakPsiSubtree 0 69 46 / 150 = 0.30667 0.00951 ## TweakPsiSegment 2 77 57 / 160 = 0.35625 0.01148 ## TweakPsiPhiSubtree 12 74 58 / 188 = 0.30851 0.01820 ## TweakPsiPhiSegment 13 86 45 / 163 = 0.27607 0.01302 ## TweakHbondSubtree 1 20 10 / 63 = 0.15873 0.01881 ## TweakHbondSegment 0 62 31 / 190 = 0.16316 0.02083 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 13 7 / 34 = 0.20588 0.00146 ## OneRotamer 0 48 21 / 170 = 0.12353 0.01127 ## ClashingRotamer 0 1 1 / 71 = 0.01408 0.00230 ## ClusteredRotamer 2 13 8 / 123 = 0.06504 0.01064 ## ReduceBreak 1 37 27 / 464 = 0.05819 0.05260 ## CloseGap 0 20 14 / 314 = 0.04459 0.02452 ## HealGap 0 2 2 / 214 = 0.00935 0.00019 ## MoveGap 1 58 35 / 515 = 0.06796 0.08151 ## ReduceConstraint 0 9 4 / 248 = 0.01613 0.02192 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 974 = 0.01437 0.02493 ## InsertFragment 0 28 14 / 347 = 0.04035 0.01802 ## TwoFragment 0 0 1 / 256 = 0.00391 0.00820 ## CrossOver 3 14 2 / 129 = 0.01550 0.00070 ## CrossAndInsert 4 2 1 / 223 = 0.00448 0.00196 ## ReduceClash 0 12 6 / 268 = 0.02239 0.00818 # generation 59: best score out of 20: T0287.try5 201.84552 cost/residue, 241 clashes 0.20112 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 2 / 15 = 0.13333 0.00167 ## JiggleSubtree 1 26 18 / 167 = 0.10778 0.01593 ## JiggleSegment 0 11 5 / 59 = 0.08475 0.02098 ## OptSubtree 0 1 0 / 50 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 1 / 13 = 0.07692 0.00001 ## TweakPhiSegment 4 70 21 / 133 = 0.15789 0.01301 ## TweakPsiSubtree 0 70 46 / 153 = 0.30065 0.00933 ## TweakPsiSegment 2 80 59 / 164 = 0.35976 0.01122 ## TweakPsiPhiSubtree 13 77 62 / 197 = 0.31472 0.01851 ## TweakPsiPhiSegment 13 88 47 / 168 = 0.27976 0.01270 ## TweakHbondSubtree 2 23 14 / 72 = 0.19444 0.02104 ## TweakHbondSegment 0 63 31 / 195 = 0.15897 0.02029 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 14 8 / 35 = 0.22857 0.00150 ## OneRotamer 0 48 21 / 170 = 0.12353 0.01127 ## ClashingRotamer 0 1 1 / 72 = 0.01389 0.00226 ## ClusteredRotamer 3 13 8 / 125 = 0.06400 0.01047 ## ReduceBreak 1 37 27 / 470 = 0.05745 0.05193 ## CloseGap 0 20 14 / 315 = 0.04444 0.02444 ## HealGap 0 2 2 / 218 = 0.00917 0.00019 ## MoveGap 1 58 35 / 520 = 0.06731 0.08073 ## ReduceConstraint 0 9 4 / 250 = 0.01600 0.02175 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 980 = 0.01429 0.02478 ## InsertFragment 0 28 14 / 349 = 0.04011 0.01792 ## TwoFragment 0 0 1 / 256 = 0.00391 0.00820 ## CrossOver 3 14 2 / 130 = 0.01538 0.00069 ## CrossAndInsert 4 2 1 / 225 = 0.00444 0.00195 ## ReduceClash 0 12 6 / 273 = 0.02198 0.00803 # generation 60: best score out of 20: T0287.try5 201.72322 cost/residue, 241 clashes 0.19289 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 3 / 18 = 0.16667 0.01999 ## JiggleSubtree 1 26 18 / 176 = 0.10227 0.01512 ## JiggleSegment 0 12 5 / 68 = 0.07353 0.01820 ## OptSubtree 0 1 0 / 51 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 1 / 13 = 0.07692 0.00001 ## TweakPhiSegment 4 71 21 / 135 = 0.15556 0.01282 ## TweakPsiSubtree 0 70 46 / 154 = 0.29870 0.00927 ## TweakPsiSegment 2 82 62 / 168 = 0.36905 0.01098 ## TweakPsiPhiSubtree 13 78 62 / 201 = 0.30846 0.01815 ## TweakPsiPhiSegment 13 92 48 / 175 = 0.27429 0.01225 ## TweakHbondSubtree 2 25 18 / 77 = 0.23377 0.02026 ## TweakHbondSegment 0 65 32 / 200 = 0.16000 0.01986 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 14 8 / 35 = 0.22857 0.00150 ## OneRotamer 0 48 23 / 175 = 0.13143 0.01113 ## ClashingRotamer 0 1 1 / 72 = 0.01389 0.00226 ## ClusteredRotamer 3 13 8 / 125 = 0.06400 0.01047 ## ReduceBreak 1 37 27 / 475 = 0.05684 0.05138 ## CloseGap 0 20 14 / 318 = 0.04403 0.02421 ## HealGap 0 3 5 / 225 = 0.02222 0.00184 ## MoveGap 1 58 35 / 524 = 0.06679 0.08011 ## ReduceConstraint 0 9 4 / 254 = 0.01575 0.02141 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 25 14 / 985 = 0.01421 0.02466 ## InsertFragment 0 28 14 / 354 = 0.03955 0.01767 ## TwoFragment 0 0 1 / 258 = 0.00388 0.00814 ## CrossOver 3 14 2 / 132 = 0.01515 0.00068 ## CrossAndInsert 4 2 1 / 228 = 0.00439 0.00192 ## ReduceClash 0 12 6 / 276 = 0.02174 0.00794 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_531104381.pdb -s /var/tmp/to_scwrl_531104381.seq -o /var/tmp/from_scwrl_531104381.pdb > /var/tmp/scwrl_531104381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_531104381.pdb # T0287.try5-scwrl 200.10631 cost/residue 229 clashes 0.19288 breaks # filling super_pool to have at least 20 conformations # best score in super_pool out of 20: T0287.try5-scwrl at pool[5] 198.01216 cost/residue, 211 clashes 0.28600 breaks # optimizing backbone with 20 conformations in pool # doing 100 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # Closing gap before 54 without wiggling. # generation 1: best score out of 20: T0287.try5-scwrl 198.01216 cost/residue, 211 clashes 0.28600 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 10 = 0.00000 0.00000 ## CloseGap 0 3 0 / 8 = 0.00000 0.00000 ## HealGap 0 0 0 / 6 = 0.00000 0.00000 ## MoveGap 0 0 0 / 6 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 6 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 25 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 8 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 7 = 0.00000 0.00000 ## CrossOver 0 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 4 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 4 = 0.25000 0.05397 # generation 2: best score out of 20: T0287.try5-scwrl 198.01216 cost/residue, 211 clashes 0.28600 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 0 = 0.00000 0.00000 ## OptSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 1 = 1.00000 0.00687 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ReduceBreak 0 3 0 / 16 = 0.00000 0.00000 ## CloseGap 0 3 0 / 16 = 0.00000 0.00000 ## HealGap 0 3 0 / 9 = 0.00000 0.00000 ## MoveGap 0 0 0 / 13 = 0.00000 0.00000 ## ReduceConstraint 0 3 0 / 14 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 55 = 0.00000 0.00000 ## InsertFragment 0 3 0 / 13 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 10 = 0.00000 0.00000 ## CrossOver 0 0 0 / 4 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 9 = 0.00000 0.00000 ## ReduceClash 0 1 1 / 14 = 0.07143 0.01542 # generation 3: best score out of 20: T0287.try5-scwrl 198.01216 cost/residue, 211 clashes 0.28600 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 1 / 1 = 1.00000 0.00687 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 4 0 / 19 = 0.00000 0.00000 ## CloseGap 0 4 0 / 22 = 0.00000 0.00000 ## HealGap 0 4 0 / 17 = 0.00000 0.00000 ## MoveGap 0 0 0 / 16 = 0.00000 0.00000 ## ReduceConstraint 0 4 0 / 19 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 79 = 0.00000 0.00000 ## InsertFragment 0 3 0 / 18 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 19 = 0.00000 0.00000 ## CrossOver 0 1 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 17 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 26 = 0.03846 0.00830 # generation 4: best score out of 20: T0287.try5-scwrl 196.20638 cost/residue, 192 clashes 0.16109 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 2 = 0.50000 0.02223 ## TweakPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 2 1 / 2 = 0.50000 0.01749 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 6 = 0.33333 0.00156 ## OneRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 8 = 0.00000 0.00000 ## ReduceBreak 0 5 1 / 28 = 0.03571 0.01127 ## CloseGap 0 4 0 / 24 = 0.00000 0.00000 ## HealGap 0 6 0 / 24 = 0.00000 0.00000 ## MoveGap 0 0 0 / 21 = 0.00000 0.00000 ## ReduceConstraint 0 4 0 / 25 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 100 = 0.00000 0.00000 ## InsertFragment 0 3 0 / 24 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 30 = 0.00000 0.00000 ## CrossOver 0 2 1 / 11 = 0.09091 0.28547 ## CrossAndInsert 0 0 0 / 21 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 34 = 0.02941 0.00635 # generation 5: best score out of 20: T0287.try5-scwrl 194.76817 cost/residue, 184 clashes 0.16079 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.01112 ## TweakPhiSegment 1 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 5 3 / 6 = 0.50000 0.03259 ## TweakPsiPhiSubtree 0 4 1 / 5 = 0.20000 0.00700 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 6 = 0.33333 0.00156 ## OneRotamer 0 3 1 / 5 = 0.20000 0.02740 ## ClashingRotamer 0 1 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 8 = 0.00000 0.00000 ## ReduceBreak 0 5 1 / 35 = 0.02857 0.00902 ## CloseGap 0 4 0 / 30 = 0.00000 0.00000 ## HealGap 0 6 0 / 27 = 0.00000 0.00000 ## MoveGap 0 0 0 / 24 = 0.00000 0.00000 ## ReduceConstraint 0 4 0 / 30 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 121 = 0.00000 0.00000 ## InsertFragment 0 5 1 / 31 = 0.03226 0.03385 ## TwoFragment 0 0 0 / 36 = 0.00000 0.00000 ## CrossOver 1 3 2 / 23 = 0.08696 0.27762 ## CrossAndInsert 0 0 0 / 26 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 42 = 0.02381 0.00514 # generation 6: best score out of 20: T0287.try5-scwrl 194.76817 cost/residue, 184 clashes 0.16079 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 4 = 0.25000 0.01112 ## TweakPhiSegment 1 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 6 4 / 7 = 0.57143 0.02794 ## TweakPsiPhiSubtree 0 4 1 / 5 = 0.20000 0.00700 ## TweakPsiPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 6 = 0.33333 0.00156 ## OneRotamer 0 5 1 / 7 = 0.14286 0.01957 ## ClashingRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 1 3 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 5 1 / 40 = 0.02500 0.00789 ## CloseGap 0 4 0 / 37 = 0.00000 0.00000 ## HealGap 0 8 1 / 33 = 0.03030 0.00217 ## MoveGap 0 0 0 / 28 = 0.00000 0.00000 ## ReduceConstraint 1 5 0 / 36 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 144 = 0.00000 0.00000 ## InsertFragment 0 7 1 / 41 = 0.02439 0.02559 ## TwoFragment 0 0 0 / 40 = 0.00000 0.00000 ## CrossOver 1 4 2 / 36 = 0.05556 0.17737 ## CrossAndInsert 0 1 0 / 27 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 49 = 0.02041 0.00441 # Closing gap before 104 next to short segment # generation 7: best score out of 20: T0287.try5-scwrl 194.76817 cost/residue, 184 clashes 0.16079 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 1 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00741 ## TweakPhiSegment 1 1 1 / 2 = 0.50000 0.02860 ## TweakPsiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 7 4 / 9 = 0.44444 0.02173 ## TweakPsiPhiSubtree 0 4 1 / 5 = 0.20000 0.00700 ## TweakPsiPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 3 / 8 = 0.37500 0.00125 ## OneRotamer 0 9 1 / 12 = 0.08333 0.01142 ## ClashingRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 44 = 0.02273 0.00717 ## CloseGap 0 4 0 / 41 = 0.00000 0.00000 ## HealGap 0 8 1 / 35 = 0.02857 0.00205 ## MoveGap 0 0 0 / 32 = 0.00000 0.00000 ## ReduceConstraint 1 5 0 / 39 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 166 = 0.00000 0.00000 ## InsertFragment 0 8 1 / 50 = 0.02000 0.02099 ## TwoFragment 0 0 0 / 50 = 0.00000 0.00000 ## CrossOver 1 5 3 / 53 = 0.05660 0.12672 ## CrossAndInsert 0 1 0 / 33 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 54 = 0.01852 0.00400 # Closing gap before 138 without wiggling. # generation 8: best score out of 20: T0287.try5-scwrl 194.75679 cost/residue, 184 clashes 0.16072 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00741 ## TweakPhiSegment 1 2 2 / 4 = 0.50000 0.01431 ## TweakPsiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 10 6 / 12 = 0.50000 0.02070 ## TweakPsiPhiSubtree 0 6 2 / 7 = 0.28571 0.02070 ## TweakPsiPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 3 / 8 = 0.37500 0.00125 ## OneRotamer 0 10 1 / 13 = 0.07692 0.01054 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 13 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 53 = 0.01887 0.00595 ## CloseGap 0 4 0 / 45 = 0.00000 0.00000 ## HealGap 0 8 1 / 43 = 0.02326 0.00167 ## MoveGap 0 0 0 / 36 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 46 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 179 = 0.00000 0.00000 ## InsertFragment 0 8 1 / 60 = 0.01667 0.01749 ## TwoFragment 0 1 0 / 60 = 0.00000 0.00000 ## CrossOver 1 6 3 / 59 = 0.05085 0.11383 ## CrossAndInsert 0 1 0 / 38 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 61 = 0.01639 0.00354 # Closing gap before 54 # generation 9: best score out of 20: T0287.try5-scwrl 194.71297 cost/residue, 185 clashes 0.16072 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 1 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 6 = 0.16667 0.00741 ## TweakPhiSegment 1 8 2 / 10 = 0.20000 0.00572 ## TweakPsiSubtree 0 3 0 / 3 = 0.00000 0.00000 ## TweakPsiSegment 0 12 6 / 15 = 0.40000 0.01656 ## TweakPsiPhiSubtree 1 7 3 / 8 = 0.37500 0.02359 ## TweakPsiPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 3 / 8 = 0.37500 0.00125 ## OneRotamer 0 11 1 / 14 = 0.07143 0.00979 ## ClashingRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 14 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 57 = 0.01754 0.00554 ## CloseGap 0 4 0 / 52 = 0.00000 0.00000 ## HealGap 0 8 1 / 48 = 0.02083 0.00149 ## MoveGap 0 0 0 / 46 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 49 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 197 = 0.00000 0.00000 ## InsertFragment 0 8 1 / 62 = 0.01613 0.01692 ## TwoFragment 0 1 0 / 67 = 0.00000 0.00000 ## CrossOver 1 8 3 / 74 = 0.04054 0.09076 ## CrossAndInsert 0 1 0 / 43 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 65 = 0.01538 0.00332 # Closing gap before 107 next to short segment # Closing gap before 83 # generation 10: best score out of 20: T0287.try5-scwrl 194.65430 cost/residue, 185 clashes 0.16066 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 3 = 0.33333 0.02359 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 1 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 1 / 8 = 0.12500 0.00556 ## TweakPhiSegment 1 8 2 / 10 = 0.20000 0.00572 ## TweakPsiSubtree 0 4 1 / 4 = 0.25000 0.00000 ## TweakPsiSegment 0 13 7 / 17 = 0.41176 0.01469 ## TweakPsiPhiSubtree 1 12 7 / 15 = 0.46667 0.02699 ## TweakPsiPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 3 / 9 = 0.33333 0.00111 ## OneRotamer 0 12 1 / 17 = 0.05882 0.00806 ## ClashingRotamer 0 1 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 19 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 60 = 0.01667 0.00526 ## CloseGap 0 5 0 / 61 = 0.00000 0.00000 ## HealGap 0 8 1 / 56 = 0.01786 0.00128 ## MoveGap 0 0 0 / 53 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 50 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 213 = 0.00000 0.00000 ## InsertFragment 0 8 1 / 67 = 0.01493 0.01566 ## TwoFragment 0 1 0 / 72 = 0.00000 0.00000 ## CrossOver 1 9 3 / 83 = 0.03614 0.08092 ## CrossAndInsert 0 1 0 / 48 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 69 = 0.01449 0.00313 # Closing gap before 104 next to short segment # Closing gap before 104 next to short segment # generation 11: best score out of 20: T0287.try5-scwrl 194.64534 cost/residue, 185 clashes 0.16066 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 2 / 5 = 0.40000 0.01620 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 1 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 6 1 / 9 = 0.11111 0.00494 ## TweakPhiSegment 1 10 2 / 12 = 0.16667 0.00477 ## TweakPsiSubtree 0 4 1 / 6 = 0.16667 0.00000 ## TweakPsiSegment 0 16 10 / 20 = 0.50000 0.01366 ## TweakPsiPhiSubtree 1 15 7 / 21 = 0.33333 0.01928 ## TweakPsiPhiSegment 1 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 3 / 9 = 0.33333 0.00111 ## OneRotamer 0 12 1 / 20 = 0.05000 0.00685 ## ClashingRotamer 0 1 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 20 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 64 = 0.01562 0.00493 ## CloseGap 0 5 0 / 70 = 0.00000 0.00000 ## HealGap 0 8 1 / 59 = 0.01695 0.00122 ## MoveGap 0 0 0 / 60 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 53 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 227 = 0.00000 0.00000 ## InsertFragment 0 8 1 / 72 = 0.01389 0.01457 ## TwoFragment 0 1 0 / 74 = 0.00000 0.00000 ## CrossOver 1 9 3 / 94 = 0.03191 0.07145 ## CrossAndInsert 0 1 0 / 61 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 72 = 0.01389 0.00300 # Closing gap before 83 # Closing gap before 54 # generation 12: best score out of 20: T0287.try5-scwrl 194.38406 cost/residue, 200 clashes 0.16072 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 13 = 0.23077 0.01175 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 1 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 11 = 0.09091 0.00404 ## TweakPhiSegment 1 11 2 / 13 = 0.15385 0.00440 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 22 13 / 27 = 0.48148 0.01225 ## TweakPsiPhiSubtree 1 15 7 / 22 = 0.31818 0.01841 ## TweakPsiPhiSegment 1 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 8 4 / 11 = 0.36364 0.00242 ## OneRotamer 0 12 1 / 21 = 0.04762 0.00652 ## ClashingRotamer 0 1 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 22 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 67 = 0.01493 0.00471 ## CloseGap 0 5 0 / 75 = 0.00000 0.00000 ## HealGap 0 8 1 / 64 = 0.01562 0.00112 ## MoveGap 0 0 0 / 66 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 55 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 242 = 0.00000 0.00000 ## InsertFragment 0 8 1 / 83 = 0.01205 0.01264 ## TwoFragment 0 1 0 / 76 = 0.00000 0.00000 ## CrossOver 1 11 5 / 104 = 0.04808 0.06883 ## CrossAndInsert 0 1 0 / 65 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 79 = 0.01266 0.00273 # Closing gap before 54 without wiggling. # generation 13: best score out of 20: T0287.try5-scwrl 194.38406 cost/residue, 200 clashes 0.16072 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 5 / 17 = 0.29412 0.00999 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 1 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 12 = 0.08333 0.00371 ## TweakPhiSegment 1 15 3 / 17 = 0.17647 0.00337 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 23 14 / 31 = 0.45161 0.01316 ## TweakPsiPhiSubtree 1 16 7 / 25 = 0.28000 0.01620 ## TweakPsiPhiSegment 1 1 1 / 2 = 0.50000 0.02540 ## TweakHbondSubtree 0 1 1 / 3 = 0.33333 0.01413 ## TweakHbondSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 6 / 13 = 0.46154 0.00529 ## OneRotamer 0 12 1 / 21 = 0.04762 0.00652 ## ClashingRotamer 0 1 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 3 3 0 / 22 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 71 = 0.01408 0.00445 ## CloseGap 0 5 0 / 80 = 0.00000 0.00000 ## HealGap 0 9 2 / 68 = 0.02941 0.00106 ## MoveGap 0 0 0 / 69 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 62 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 265 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 86 = 0.02326 0.01300 ## TwoFragment 0 1 0 / 81 = 0.00000 0.00000 ## CrossOver 4 11 5 / 112 = 0.04464 0.06391 ## CrossAndInsert 0 1 0 / 68 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 85 = 0.01176 0.00254 # Closing gap before 89 next to short segment # generation 14: best score out of 20: T0287.try5-scwrl 194.37811 cost/residue, 201 clashes 0.16072 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 5 / 17 = 0.29412 0.00999 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 1 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 12 = 0.08333 0.00371 ## TweakPhiSegment 1 15 3 / 17 = 0.17647 0.00337 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 25 14 / 33 = 0.42424 0.01237 ## TweakPsiPhiSubtree 1 18 8 / 27 = 0.29630 0.01522 ## TweakPsiPhiSegment 1 3 1 / 4 = 0.25000 0.01270 ## TweakHbondSubtree 0 3 1 / 5 = 0.20000 0.00848 ## TweakHbondSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 12 6 / 15 = 0.40000 0.00458 ## OneRotamer 0 12 1 / 21 = 0.04762 0.00652 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 26 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 74 = 0.01351 0.00427 ## CloseGap 0 5 0 / 84 = 0.00000 0.00000 ## HealGap 0 9 2 / 76 = 0.02632 0.00095 ## MoveGap 0 0 0 / 73 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 68 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 294 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 92 = 0.02174 0.01215 ## TwoFragment 0 1 0 / 83 = 0.00000 0.00000 ## CrossOver 4 11 5 / 127 = 0.03937 0.05637 ## CrossAndInsert 0 1 0 / 71 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 88 = 0.01136 0.00245 # generation 15: best score out of 20: T0287.try5-scwrl 194.30792 cost/residue, 201 clashes 0.16006 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 7 / 21 = 0.33333 0.00886 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 1 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 13 = 0.07692 0.00342 ## TweakPhiSegment 1 15 3 / 17 = 0.17647 0.00337 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 27 15 / 36 = 0.41667 0.01147 ## TweakPsiPhiSubtree 1 18 8 / 30 = 0.26667 0.01370 ## TweakPsiPhiSegment 1 6 3 / 9 = 0.33333 0.00809 ## TweakHbondSubtree 0 7 3 / 10 = 0.30000 0.00826 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 13 7 / 16 = 0.43750 0.00530 ## OneRotamer 0 12 1 / 22 = 0.04545 0.00623 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 27 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 77 = 0.01299 0.00410 ## CloseGap 0 5 0 / 92 = 0.00000 0.00000 ## HealGap 0 11 4 / 79 = 0.05063 0.00269 ## MoveGap 0 0 0 / 76 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 74 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 314 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 96 = 0.02083 0.01165 ## TwoFragment 0 1 0 / 86 = 0.00000 0.00000 ## CrossOver 4 12 5 / 138 = 0.03623 0.05187 ## CrossAndInsert 1 1 0 / 73 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 95 = 0.01053 0.00227 # generation 16: best score out of 20: T0287.try5-scwrl 194.10304 cost/residue, 202 clashes 0.16345 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 7 / 22 = 0.31818 0.00845 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 14 = 0.07143 0.00318 ## TweakPhiSegment 1 15 3 / 17 = 0.17647 0.00337 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 29 17 / 39 = 0.43590 0.01083 ## TweakPsiPhiSubtree 2 23 9 / 37 = 0.24324 0.01337 ## TweakPsiPhiSegment 1 8 4 / 14 = 0.28571 0.01355 ## TweakHbondSubtree 0 8 4 / 13 = 0.30769 0.02752 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 14 8 / 18 = 0.44444 0.00502 ## OneRotamer 0 12 1 / 25 = 0.04000 0.00548 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 28 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 80 = 0.01250 0.00395 ## CloseGap 0 5 0 / 93 = 0.00000 0.00000 ## HealGap 0 11 4 / 80 = 0.05000 0.00265 ## MoveGap 0 0 0 / 81 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 80 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 332 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 102 = 0.01961 0.01096 ## TwoFragment 0 1 0 / 91 = 0.00000 0.00000 ## CrossOver 4 12 5 / 152 = 0.03289 0.04709 ## CrossAndInsert 1 1 0 / 77 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 100 = 0.01000 0.00216 # Healing gap before (T0287)S15 residual break only 5.9734739e-02 # generation 17: best score out of 20: T0287.try5-scwrl 194.09154 cost/residue, 202 clashes 0.16000 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 7 / 24 = 0.29167 0.00775 ## JiggleSubtree 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 1 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 14 = 0.07143 0.00318 ## TweakPhiSegment 1 15 3 / 17 = 0.17647 0.00337 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 30 17 / 42 = 0.40476 0.01006 ## TweakPsiPhiSubtree 2 23 9 / 41 = 0.21951 0.01207 ## TweakPsiPhiSegment 1 12 7 / 21 = 0.33333 0.01651 ## TweakHbondSubtree 1 9 5 / 18 = 0.27778 0.02359 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 17 10 / 22 = 0.45455 0.00491 ## OneRotamer 0 12 1 / 26 = 0.03846 0.00527 ## ClashingRotamer 0 1 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 28 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 85 = 0.01176 0.00371 ## CloseGap 0 5 0 / 95 = 0.00000 0.00000 ## HealGap 0 12 4 / 90 = 0.04444 0.00236 ## MoveGap 0 0 0 / 84 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 346 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 109 = 0.01835 0.01026 ## TwoFragment 0 1 0 / 97 = 0.00000 0.00000 ## CrossOver 4 14 6 / 164 = 0.03659 0.04515 ## CrossAndInsert 2 1 0 / 79 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 105 = 0.00952 0.00206 # Closing gap before 74 next to short segment # Closing gap before 107 next to short segment # Closing gap before 64 # generation 18: best score out of 20: T0287.try5-scwrl 194.00908 cost/residue, 202 clashes 0.16096 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 7 / 27 = 0.25926 0.00689 ## JiggleSubtree 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 1 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 1 / 15 = 0.06667 0.00296 ## TweakPhiSegment 1 15 3 / 18 = 0.16667 0.00318 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 33 19 / 46 = 0.41304 0.00978 ## TweakPsiPhiSubtree 2 24 9 / 42 = 0.21429 0.01178 ## TweakPsiPhiSegment 1 16 8 / 26 = 0.30769 0.01651 ## TweakHbondSubtree 1 9 5 / 22 = 0.22727 0.01930 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 18 11 / 24 = 0.45833 0.00454 ## OneRotamer 0 12 1 / 27 = 0.03704 0.00507 ## ClashingRotamer 0 1 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 29 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 94 = 0.01064 0.00336 ## CloseGap 0 5 0 / 101 = 0.00000 0.00000 ## HealGap 0 12 4 / 100 = 0.04000 0.00212 ## MoveGap 0 0 0 / 85 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 90 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 358 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 114 = 0.01754 0.00981 ## TwoFragment 0 1 0 / 103 = 0.00000 0.00000 ## CrossOver 4 14 6 / 169 = 0.03550 0.04381 ## CrossAndInsert 2 1 0 / 85 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 111 = 0.00901 0.00195 # Closing gap before 88 next to short segment # generation 19: best score out of 20: T0287.try5-scwrl 194.00859 cost/residue, 201 clashes 0.16178 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 7 / 27 = 0.25926 0.00689 ## JiggleSubtree 0 2 1 / 7 = 0.14286 0.01181 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 1 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 1 / 15 = 0.06667 0.00296 ## TweakPhiSegment 1 15 3 / 18 = 0.16667 0.00318 ## TweakPsiSubtree 0 5 1 / 8 = 0.12500 0.00000 ## TweakPsiSegment 0 33 19 / 47 = 0.40426 0.00957 ## TweakPsiPhiSubtree 3 25 9 / 44 = 0.20455 0.01125 ## TweakPsiPhiSegment 1 20 11 / 32 = 0.34375 0.01419 ## TweakHbondSubtree 1 11 5 / 30 = 0.16667 0.01415 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 20 13 / 27 = 0.48148 0.00514 ## OneRotamer 0 12 1 / 29 = 0.03448 0.00472 ## ClashingRotamer 0 2 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 29 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 96 = 0.01042 0.00329 ## CloseGap 0 6 0 / 107 = 0.00000 0.00000 ## HealGap 0 12 4 / 106 = 0.03774 0.00200 ## MoveGap 0 0 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 93 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 382 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 118 = 0.01695 0.00948 ## TwoFragment 0 1 0 / 109 = 0.00000 0.00000 ## CrossOver 4 14 6 / 179 = 0.03352 0.04137 ## CrossAndInsert 2 1 0 / 90 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 112 = 0.00893 0.00193 # generation 20: best score out of 20: T0287.try5-scwrl 193.72220 cost/residue, 198 clashes 0.16030 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 16 8 / 30 = 0.26667 0.00842 ## JiggleSubtree 0 2 1 / 15 = 0.06667 0.00551 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 1 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 1 / 15 = 0.06667 0.00296 ## TweakPhiSegment 1 17 3 / 21 = 0.14286 0.00273 ## TweakPsiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPsiSegment 0 35 20 / 51 = 0.39216 0.00897 ## TweakPsiPhiSubtree 3 25 9 / 44 = 0.20455 0.01125 ## TweakPsiPhiSegment 1 21 12 / 37 = 0.32432 0.01269 ## TweakHbondSubtree 1 11 5 / 33 = 0.15152 0.01287 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 22 14 / 30 = 0.46667 0.00471 ## OneRotamer 0 12 1 / 32 = 0.03125 0.00428 ## ClashingRotamer 0 2 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 101 = 0.00990 0.00312 ## CloseGap 0 6 0 / 113 = 0.00000 0.00000 ## HealGap 0 12 4 / 106 = 0.03774 0.00200 ## MoveGap 0 0 0 / 94 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 98 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 393 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 123 = 0.01626 0.00909 ## TwoFragment 0 1 0 / 114 = 0.00000 0.00000 ## CrossOver 4 15 7 / 189 = 0.03704 0.04069 ## CrossAndInsert 2 1 0 / 100 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 115 = 0.00870 0.00188 # Closing gap before 54 without wiggling. # Closing gap before 107 next to short segment # generation 21: best score out of 20: T0287.try5-scwrl 193.71262 cost/residue, 198 clashes 0.16030 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 17 8 / 34 = 0.23529 0.00743 ## JiggleSubtree 0 2 1 / 17 = 0.05882 0.00486 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 1 / 15 = 0.06667 0.00296 ## TweakPhiSegment 1 19 4 / 23 = 0.17391 0.00280 ## TweakPsiSubtree 0 6 2 / 10 = 0.20000 0.00011 ## TweakPsiSegment 0 37 22 / 55 = 0.40000 0.00908 ## TweakPsiPhiSubtree 3 26 9 / 45 = 0.20000 0.01100 ## TweakPsiPhiSegment 2 22 13 / 45 = 0.28889 0.01047 ## TweakHbondSubtree 1 12 7 / 38 = 0.18421 0.01274 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 23 15 / 35 = 0.42857 0.00431 ## OneRotamer 0 13 1 / 33 = 0.03030 0.00415 ## ClashingRotamer 0 2 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 104 = 0.00962 0.00303 ## CloseGap 0 6 0 / 118 = 0.00000 0.00000 ## HealGap 0 12 4 / 109 = 0.03670 0.00195 ## MoveGap 0 0 0 / 97 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 99 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 419 = 0.00000 0.00000 ## InsertFragment 0 9 2 / 127 = 0.01575 0.00880 ## TwoFragment 0 1 0 / 119 = 0.00000 0.00000 ## CrossOver 4 17 8 / 199 = 0.04020 0.03941 ## CrossAndInsert 2 1 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 118 = 0.00847 0.00183 # Healing gap before (T0287)S15 residual break only 5.9731874e-02 # generation 22: best score out of 20: T0287.try5-scwrl 193.56902 cost/residue, 203 clashes 0.15972 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 8 / 36 = 0.22222 0.00702 ## JiggleSubtree 0 2 1 / 22 = 0.04545 0.00376 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 2 10 3 / 18 = 0.16667 0.01071 ## TweakPhiSegment 1 19 4 / 23 = 0.17391 0.00280 ## TweakPsiSubtree 0 6 2 / 10 = 0.20000 0.00011 ## TweakPsiSegment 0 38 23 / 57 = 0.40351 0.00877 ## TweakPsiPhiSubtree 3 28 10 / 48 = 0.20833 0.01127 ## TweakPsiPhiSegment 2 25 13 / 49 = 0.26531 0.00962 ## TweakHbondSubtree 1 13 7 / 44 = 0.15909 0.01101 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 23 15 / 38 = 0.39474 0.00397 ## OneRotamer 0 13 1 / 33 = 0.03030 0.00415 ## ClashingRotamer 0 2 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 106 = 0.00943 0.00298 ## CloseGap 0 6 0 / 121 = 0.00000 0.00000 ## HealGap 0 12 4 / 116 = 0.03448 0.00183 ## MoveGap 0 0 0 / 102 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 101 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 438 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 134 = 0.01493 0.00834 ## TwoFragment 0 1 0 / 123 = 0.00000 0.00000 ## CrossOver 4 19 9 / 205 = 0.04390 0.03835 ## CrossAndInsert 2 1 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 127 = 0.00787 0.00170 # generation 23: best score out of 20: T0287.try5-scwrl 193.45120 cost/residue, 203 clashes 0.16051 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 9 / 37 = 0.24324 0.00698 ## JiggleSubtree 0 2 1 / 24 = 0.04167 0.00345 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 3 16 6 / 28 = 0.21429 0.00879 ## TweakPhiSegment 1 20 4 / 27 = 0.14815 0.00238 ## TweakPsiSubtree 0 7 3 / 11 = 0.27273 0.00711 ## TweakPsiSegment 0 38 23 / 60 = 0.38333 0.00833 ## TweakPsiPhiSubtree 3 30 11 / 52 = 0.21154 0.01050 ## TweakPsiPhiSegment 2 27 16 / 54 = 0.29630 0.01176 ## TweakHbondSubtree 1 13 7 / 47 = 0.14894 0.01030 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 23 15 / 41 = 0.36585 0.00368 ## OneRotamer 0 13 1 / 34 = 0.02941 0.00403 ## ClashingRotamer 0 2 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 33 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 111 = 0.00901 0.00284 ## CloseGap 0 6 0 / 123 = 0.00000 0.00000 ## HealGap 0 12 4 / 117 = 0.03419 0.00181 ## MoveGap 0 0 0 / 106 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 103 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 25 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 453 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 138 = 0.01449 0.00810 ## TwoFragment 0 1 0 / 131 = 0.00000 0.00000 ## CrossOver 5 21 9 / 214 = 0.04206 0.03674 ## CrossAndInsert 2 1 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 130 = 0.00769 0.00166 # generation 24: best score out of 20: T0287.try5-scwrl 193.44156 cost/residue, 203 clashes 0.16051 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 10 / 39 = 0.25641 0.00669 ## JiggleSubtree 0 2 1 / 24 = 0.04167 0.00345 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 1 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 3 18 6 / 34 = 0.17647 0.00724 ## TweakPhiSegment 1 20 4 / 27 = 0.14815 0.00238 ## TweakPsiSubtree 0 9 5 / 17 = 0.29412 0.00479 ## TweakPsiSegment 0 38 23 / 62 = 0.37097 0.00806 ## TweakPsiPhiSubtree 3 32 12 / 55 = 0.21818 0.01112 ## TweakPsiPhiSegment 2 33 20 / 63 = 0.31746 0.01112 ## TweakHbondSubtree 1 13 7 / 49 = 0.14286 0.00988 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 24 16 / 42 = 0.38095 0.00382 ## OneRotamer 0 13 1 / 35 = 0.02857 0.00391 ## ClashingRotamer 0 2 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 35 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 113 = 0.00885 0.00279 ## CloseGap 0 6 0 / 125 = 0.00000 0.00000 ## HealGap 0 12 4 / 119 = 0.03361 0.00178 ## MoveGap 0 0 0 / 109 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 472 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 147 = 0.01361 0.00761 ## TwoFragment 0 1 0 / 138 = 0.00000 0.00000 ## CrossOver 5 21 9 / 223 = 0.04036 0.03526 ## CrossAndInsert 2 1 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 134 = 0.00746 0.00161 # Closing gap before 102 next to short segment # generation 25: best score out of 20: T0287.try5-scwrl 193.41075 cost/residue, 203 clashes 0.16171 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 19 10 / 41 = 0.24390 0.00636 ## JiggleSubtree 0 2 1 / 25 = 0.04000 0.00331 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 1 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 3 19 6 / 36 = 0.16667 0.00684 ## TweakPhiSegment 1 20 4 / 27 = 0.14815 0.00238 ## TweakPsiSubtree 0 10 6 / 19 = 0.31579 0.00456 ## TweakPsiSegment 0 39 24 / 64 = 0.37500 0.00819 ## TweakPsiPhiSubtree 3 34 12 / 59 = 0.20339 0.01036 ## TweakPsiPhiSegment 3 36 22 / 69 = 0.31884 0.01078 ## TweakHbondSubtree 1 14 9 / 51 = 0.17647 0.01018 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 25 17 / 44 = 0.38636 0.00386 ## OneRotamer 0 14 1 / 39 = 0.02564 0.00351 ## ClashingRotamer 0 2 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 38 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 116 = 0.00862 0.00272 ## CloseGap 0 6 0 / 128 = 0.00000 0.00000 ## HealGap 0 13 5 / 127 = 0.03937 0.00169 ## MoveGap 0 0 0 / 109 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 116 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 487 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 150 = 0.01333 0.00745 ## TwoFragment 0 1 0 / 145 = 0.00000 0.00000 ## CrossOver 5 21 9 / 230 = 0.03913 0.03418 ## CrossAndInsert 2 1 0 / 114 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 140 = 0.00714 0.00154 # Closing gap before 138 without wiggling. # Closing gap before 54 without wiggling. # generation 26: best score out of 20: T0287.try5-scwrl 193.35829 cost/residue, 203 clashes 0.16134 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 11 / 44 = 0.25000 0.00614 ## JiggleSubtree 0 2 1 / 29 = 0.03448 0.00285 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 1 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 3 23 6 / 42 = 0.14286 0.00586 ## TweakPhiSegment 1 20 4 / 28 = 0.14286 0.00230 ## TweakPsiSubtree 0 10 6 / 22 = 0.27273 0.00394 ## TweakPsiSegment 0 39 24 / 65 = 0.36923 0.00807 ## TweakPsiPhiSubtree 3 38 15 / 66 = 0.22727 0.01171 ## TweakPsiPhiSegment 3 37 22 / 73 = 0.30137 0.01019 ## TweakHbondSubtree 1 15 9 / 56 = 0.16071 0.00927 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 25 17 / 44 = 0.38636 0.00386 ## OneRotamer 0 14 1 / 41 = 0.02439 0.00334 ## ClashingRotamer 0 2 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 40 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 121 = 0.00826 0.00261 ## CloseGap 0 6 0 / 134 = 0.00000 0.00000 ## HealGap 0 13 5 / 132 = 0.03788 0.00163 ## MoveGap 0 0 0 / 112 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 118 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 502 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 154 = 0.01299 0.00726 ## TwoFragment 0 1 0 / 146 = 0.00000 0.00000 ## CrossOver 5 22 10 / 237 = 0.04219 0.03318 ## CrossAndInsert 2 1 0 / 120 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 143 = 0.00699 0.00151 # Closing gap before 107 next to short segment # generation 27: best score out of 20: T0287.try5-scwrl 193.31535 cost/residue, 205 clashes 0.16142 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 21 12 / 48 = 0.25000 0.00568 ## JiggleSubtree 0 2 1 / 29 = 0.03448 0.00285 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 1 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 3 27 7 / 48 = 0.14583 0.00602 ## TweakPhiSegment 1 20 4 / 28 = 0.14286 0.00230 ## TweakPsiSubtree 0 10 7 / 25 = 0.28000 0.00347 ## TweakPsiSegment 0 41 27 / 71 = 0.38028 0.00872 ## TweakPsiPhiSubtree 4 39 16 / 74 = 0.21622 0.01076 ## TweakPsiPhiSegment 3 39 22 / 76 = 0.28947 0.00978 ## TweakHbondSubtree 1 15 9 / 61 = 0.14754 0.00851 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 25 17 / 45 = 0.37778 0.00377 ## OneRotamer 0 14 1 / 43 = 0.02326 0.00319 ## ClashingRotamer 0 2 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 3 5 0 / 42 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 122 = 0.00820 0.00259 ## CloseGap 0 6 0 / 137 = 0.00000 0.00000 ## HealGap 0 13 5 / 135 = 0.03704 0.00159 ## MoveGap 0 0 0 / 114 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 120 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 517 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 157 = 0.01274 0.00712 ## TwoFragment 0 1 0 / 148 = 0.00000 0.00000 ## CrossOver 5 24 10 / 247 = 0.04049 0.03183 ## CrossAndInsert 2 1 0 / 126 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 150 = 0.00667 0.00144 # Closing gap before 89 next to short segment # Closing gap before 54 without wiggling. # Healing gap before (T0287)S15 residual break only 5.9731874e-02 # Closing gap before 14 without wiggling. # generation 28: best score out of 20: T0287.try5-scwrl 193.13670 cost/residue, 203 clashes 0.16168 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 13 / 51 = 0.25490 0.00889 ## JiggleSubtree 0 2 1 / 30 = 0.03333 0.00276 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 1 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 3 28 7 / 51 = 0.13725 0.00567 ## TweakPhiSegment 1 21 4 / 29 = 0.13793 0.00222 ## TweakPsiSubtree 0 12 10 / 32 = 0.31250 0.00294 ## TweakPsiSegment 0 43 28 / 73 = 0.38356 0.00849 ## TweakPsiPhiSubtree 4 41 18 / 81 = 0.22222 0.01072 ## TweakPsiPhiSegment 3 40 22 / 78 = 0.28205 0.00953 ## TweakHbondSubtree 1 15 9 / 61 = 0.14754 0.00851 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 25 17 / 45 = 0.37778 0.00377 ## OneRotamer 0 14 1 / 46 = 0.02174 0.00298 ## ClashingRotamer 0 2 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 43 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 129 = 0.00775 0.00245 ## CloseGap 0 6 0 / 144 = 0.00000 0.00000 ## HealGap 0 13 5 / 142 = 0.03521 0.00151 ## MoveGap 0 0 0 / 117 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 122 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 528 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 159 = 0.01258 0.00703 ## TwoFragment 0 1 0 / 148 = 0.00000 0.00000 ## CrossOver 6 27 11 / 263 = 0.04183 0.03020 ## CrossAndInsert 2 1 0 / 132 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 156 = 0.00641 0.00138 # generation 29: best score out of 20: T0287.try5-scwrl 193.13022 cost/residue, 203 clashes 0.16168 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 13 / 55 = 0.23636 0.00824 ## JiggleSubtree 0 2 1 / 31 = 0.03226 0.00267 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 1 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 28 7 / 51 = 0.13725 0.00567 ## TweakPhiSegment 1 22 4 / 31 = 0.12903 0.00207 ## TweakPsiSubtree 0 13 10 / 33 = 0.30303 0.00285 ## TweakPsiSegment 0 45 30 / 76 = 0.39474 0.00908 ## TweakPsiPhiSubtree 5 44 18 / 93 = 0.19355 0.00934 ## TweakPsiPhiSegment 5 44 22 / 84 = 0.26190 0.00885 ## TweakHbondSubtree 1 15 9 / 63 = 0.14286 0.00824 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 26 18 / 48 = 0.37500 0.00367 ## OneRotamer 0 14 1 / 47 = 0.02128 0.00292 ## ClashingRotamer 0 2 0 / 30 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 44 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 135 = 0.00741 0.00234 ## CloseGap 0 6 0 / 149 = 0.00000 0.00000 ## HealGap 0 13 5 / 147 = 0.03401 0.00146 ## MoveGap 0 0 0 / 119 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 125 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 547 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 164 = 0.01220 0.00682 ## TwoFragment 0 1 0 / 151 = 0.00000 0.00000 ## CrossOver 7 27 11 / 268 = 0.04104 0.02963 ## CrossAndInsert 2 1 0 / 135 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 161 = 0.00621 0.00134 # generation 30: best score out of 20: T0287.try5-scwrl 193.09398 cost/residue, 203 clashes 0.16168 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 14 / 63 = 0.22222 0.00787 ## JiggleSubtree 0 2 1 / 33 = 0.03030 0.00251 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 1 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 4 29 9 / 54 = 0.16667 0.00559 ## TweakPhiSegment 1 22 4 / 32 = 0.12500 0.00201 ## TweakPsiSubtree 0 16 12 / 37 = 0.32432 0.00260 ## TweakPsiSegment 0 49 35 / 84 = 0.41667 0.00862 ## TweakPsiPhiSubtree 6 44 18 / 93 = 0.19355 0.00934 ## TweakPsiPhiSegment 5 47 24 / 92 = 0.26087 0.00877 ## TweakHbondSubtree 1 16 9 / 68 = 0.13235 0.00763 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 26 18 / 48 = 0.37500 0.00367 ## OneRotamer 0 14 1 / 48 = 0.02083 0.00285 ## ClashingRotamer 0 2 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 47 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 136 = 0.00735 0.00232 ## CloseGap 0 6 0 / 153 = 0.00000 0.00000 ## HealGap 0 13 5 / 151 = 0.03311 0.00142 ## MoveGap 0 0 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 131 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 564 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 170 = 0.01176 0.00658 ## TwoFragment 0 1 0 / 153 = 0.00000 0.00000 ## CrossOver 7 28 11 / 273 = 0.04029 0.02909 ## CrossAndInsert 2 1 0 / 137 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 162 = 0.00617 0.00133 # generation 31: best score out of 20: T0287.try5-scwrl 192.98042 cost/residue, 205 clashes 0.16144 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 14 / 66 = 0.21212 0.00751 ## JiggleSubtree 0 3 2 / 35 = 0.05714 0.00415 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 1 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 4 30 9 / 57 = 0.15789 0.00530 ## TweakPhiSegment 1 23 5 / 33 = 0.15152 0.00385 ## TweakPsiSubtree 0 16 12 / 38 = 0.31579 0.00253 ## TweakPsiSegment 0 53 37 / 93 = 0.39785 0.00784 ## TweakPsiPhiSubtree 8 46 19 / 100 = 0.19000 0.01016 ## TweakPsiPhiSegment 5 47 24 / 95 = 0.25263 0.00850 ## TweakHbondSubtree 1 17 10 / 71 = 0.14085 0.00754 ## TweakHbondSegment 0 2 1 / 5 = 0.20000 0.00409 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 27 19 / 51 = 0.37255 0.00347 ## OneRotamer 0 14 1 / 48 = 0.02083 0.00285 ## ClashingRotamer 0 2 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 49 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 141 = 0.00709 0.00224 ## CloseGap 0 6 0 / 155 = 0.00000 0.00000 ## HealGap 0 13 5 / 154 = 0.03247 0.00139 ## MoveGap 0 0 0 / 127 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 137 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 578 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 173 = 0.01156 0.00646 ## TwoFragment 0 1 0 / 156 = 0.00000 0.00000 ## CrossOver 8 28 11 / 283 = 0.03887 0.02806 ## CrossAndInsert 2 1 0 / 139 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 169 = 0.00592 0.00128 # Closing gap before 161 # generation 32: best score out of 20: T0287.try5-scwrl 192.97089 cost/residue, 205 clashes 0.16141 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 14 / 68 = 0.20588 0.00729 ## JiggleSubtree 0 3 2 / 39 = 0.05128 0.00373 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 1 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 4 33 10 / 61 = 0.16393 0.00566 ## TweakPhiSegment 1 23 5 / 36 = 0.13889 0.00353 ## TweakPsiSubtree 0 16 12 / 39 = 0.30769 0.00246 ## TweakPsiSegment 0 54 37 / 98 = 0.37755 0.00744 ## TweakPsiPhiSubtree 8 48 19 / 104 = 0.18269 0.00977 ## TweakPsiPhiSegment 6 52 27 / 103 = 0.26214 0.00830 ## TweakHbondSubtree 1 17 10 / 74 = 0.13514 0.00723 ## TweakHbondSegment 0 3 2 / 10 = 0.20000 0.00330 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 28 20 / 53 = 0.37736 0.00346 ## OneRotamer 0 14 1 / 48 = 0.02083 0.00285 ## ClashingRotamer 0 2 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 51 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 146 = 0.00685 0.00216 ## CloseGap 0 6 0 / 157 = 0.00000 0.00000 ## HealGap 0 13 5 / 156 = 0.03205 0.00138 ## MoveGap 0 0 0 / 129 = 0.00000 0.00000 ## ReduceConstraint 1 6 0 / 141 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 591 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 177 = 0.01130 0.00632 ## TwoFragment 0 1 0 / 165 = 0.00000 0.00000 ## CrossOver 9 28 11 / 290 = 0.03793 0.02739 ## CrossAndInsert 2 1 0 / 142 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 171 = 0.00585 0.00126 # generation 33: best score out of 20: T0287.try5-scwrl 192.84314 cost/residue, 199 clashes 0.16402 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 15 / 75 = 0.20000 0.00681 ## JiggleSubtree 0 3 2 / 40 = 0.05000 0.00363 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 1 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 4 36 12 / 65 = 0.18462 0.00578 ## TweakPhiSegment 1 25 7 / 41 = 0.17073 0.00573 ## TweakPsiSubtree 0 16 12 / 41 = 0.29268 0.00234 ## TweakPsiSegment 0 55 37 / 105 = 0.35238 0.00694 ## TweakPsiPhiSubtree 8 48 20 / 106 = 0.18868 0.00974 ## TweakPsiPhiSegment 6 54 29 / 109 = 0.26606 0.00814 ## TweakHbondSubtree 1 21 13 / 80 = 0.16250 0.00797 ## TweakHbondSegment 0 4 3 / 15 = 0.20000 0.00282 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 28 22 / 57 = 0.38596 0.00342 ## OneRotamer 0 14 1 / 49 = 0.02041 0.00280 ## ClashingRotamer 0 2 0 / 32 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 51 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 147 = 0.00680 0.00215 ## CloseGap 0 6 0 / 158 = 0.00000 0.00000 ## HealGap 0 13 5 / 164 = 0.03049 0.00131 ## MoveGap 0 0 0 / 130 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 146 = 0.00685 0.00154 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 605 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 178 = 0.01124 0.00628 ## TwoFragment 0 1 0 / 169 = 0.00000 0.00000 ## CrossOver 9 29 11 / 299 = 0.03679 0.02656 ## CrossAndInsert 3 1 0 / 144 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 174 = 0.00575 0.00124 # generation 34: best score out of 20: T0287.try5-scwrl 192.83083 cost/residue, 199 clashes 0.16402 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 15 / 79 = 0.18987 0.00647 ## JiggleSubtree 0 3 2 / 45 = 0.04444 0.00323 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 1 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 4 37 12 / 71 = 0.16901 0.00529 ## TweakPhiSegment 1 28 8 / 45 = 0.17778 0.00530 ## TweakPsiSubtree 0 16 12 / 44 = 0.27273 0.00218 ## TweakPsiSegment 0 55 37 / 107 = 0.34579 0.00681 ## TweakPsiPhiSubtree 8 51 22 / 116 = 0.18966 0.00899 ## TweakPsiPhiSegment 7 56 30 / 111 = 0.27027 0.00819 ## TweakHbondSubtree 1 22 13 / 84 = 0.15476 0.00759 ## TweakHbondSegment 0 4 3 / 15 = 0.20000 0.00282 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 29 23 / 59 = 0.38983 0.00351 ## OneRotamer 0 14 1 / 50 = 0.02000 0.00274 ## ClashingRotamer 0 2 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 51 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 150 = 0.00667 0.00210 ## CloseGap 0 6 0 / 160 = 0.00000 0.00000 ## HealGap 0 13 5 / 167 = 0.02994 0.00129 ## MoveGap 0 0 0 / 134 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 160 = 0.00625 0.00140 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 618 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 180 = 0.01111 0.00621 ## TwoFragment 0 1 0 / 171 = 0.00000 0.00000 ## CrossOver 9 29 11 / 302 = 0.03642 0.02630 ## CrossAndInsert 3 1 0 / 148 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 178 = 0.00562 0.00121 # generation 35: best score out of 20: T0287.try5-scwrl 192.68018 cost/residue, 199 clashes 0.16563 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 17 / 84 = 0.20238 0.00643 ## JiggleSubtree 0 3 2 / 48 = 0.04167 0.00303 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 1 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 4 40 14 / 78 = 0.17949 0.00542 ## TweakPhiSegment 2 29 9 / 53 = 0.16981 0.00450 ## TweakPsiSubtree 0 18 13 / 46 = 0.28261 0.00219 ## TweakPsiSegment 0 56 40 / 111 = 0.36036 0.00665 ## TweakPsiPhiSubtree 9 52 24 / 120 = 0.20000 0.01013 ## TweakPsiPhiSegment 9 59 31 / 114 = 0.27193 0.00800 ## TweakHbondSubtree 1 23 13 / 89 = 0.14607 0.00716 ## TweakHbondSegment 0 5 4 / 19 = 0.21053 0.00370 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 29 24 / 60 = 0.40000 0.00352 ## OneRotamer 0 14 1 / 51 = 0.01961 0.00269 ## ClashingRotamer 0 2 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 52 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 156 = 0.00641 0.00202 ## CloseGap 0 6 0 / 164 = 0.00000 0.00000 ## HealGap 0 13 5 / 170 = 0.02941 0.00126 ## MoveGap 0 0 0 / 136 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 163 = 0.00613 0.00138 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 629 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 183 = 0.01093 0.00611 ## TwoFragment 0 1 0 / 176 = 0.00000 0.00000 ## CrossOver 9 29 11 / 307 = 0.03583 0.02587 ## CrossAndInsert 3 2 0 / 151 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 181 = 0.00552 0.00119 # Closing gap before 149 without wiggling. # generation 36: best score out of 20: T0287.try5-scwrl 192.68018 cost/residue, 199 clashes 0.16563 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 17 / 87 = 0.19540 0.00620 ## JiggleSubtree 0 3 2 / 53 = 0.03774 0.00274 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 1 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 4 40 14 / 80 = 0.17500 0.00528 ## TweakPhiSegment 2 30 9 / 55 = 0.16364 0.00434 ## TweakPsiSubtree 0 19 13 / 47 = 0.27660 0.00214 ## TweakPsiSegment 0 59 43 / 116 = 0.37069 0.00637 ## TweakPsiPhiSubtree 13 56 27 / 127 = 0.21260 0.01016 ## TweakPsiPhiSegment 10 59 31 / 116 = 0.26724 0.00787 ## TweakHbondSubtree 1 24 14 / 93 = 0.15054 0.00715 ## TweakHbondSegment 0 6 4 / 22 = 0.18182 0.00320 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 30 24 / 64 = 0.37500 0.00330 ## OneRotamer 0 14 1 / 53 = 0.01887 0.00259 ## ClashingRotamer 0 2 0 / 34 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 54 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 162 = 0.00617 0.00195 ## CloseGap 0 6 0 / 165 = 0.00000 0.00000 ## HealGap 0 13 5 / 173 = 0.02890 0.00124 ## MoveGap 0 0 0 / 142 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 171 = 0.00585 0.00131 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 642 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 187 = 0.01070 0.00598 ## TwoFragment 0 1 0 / 178 = 0.00000 0.00000 ## CrossOver 9 29 11 / 311 = 0.03537 0.02554 ## CrossAndInsert 3 2 0 / 153 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 186 = 0.00538 0.00116 # generation 37: best score out of 20: T0287.try5-scwrl 192.57800 cost/residue, 194 clashes 0.16430 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 17 / 89 = 0.19101 0.00607 ## JiggleSubtree 0 3 2 / 53 = 0.03774 0.00274 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 5 41 14 / 85 = 0.16471 0.00497 ## TweakPhiSegment 2 33 11 / 62 = 0.17742 0.00385 ## TweakPsiSubtree 0 19 13 / 48 = 0.27083 0.00210 ## TweakPsiSegment 0 59 44 / 117 = 0.37607 0.00634 ## TweakPsiPhiSubtree 14 57 27 / 133 = 0.20301 0.00970 ## TweakPsiPhiSegment 10 61 32 / 120 = 0.26667 0.00776 ## TweakHbondSubtree 1 25 14 / 101 = 0.13861 0.00658 ## TweakHbondSegment 0 9 6 / 29 = 0.20690 0.00623 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 32 25 / 67 = 0.37313 0.00328 ## OneRotamer 0 14 1 / 53 = 0.01887 0.00259 ## ClashingRotamer 0 2 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 56 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 163 = 0.00613 0.00194 ## CloseGap 0 6 0 / 167 = 0.00000 0.00000 ## HealGap 0 13 5 / 174 = 0.02874 0.00123 ## MoveGap 0 0 0 / 145 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 177 = 0.00565 0.00127 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 658 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 189 = 0.01058 0.00592 ## TwoFragment 0 1 0 / 181 = 0.00000 0.00000 ## CrossOver 9 30 12 / 317 = 0.03785 0.02537 ## CrossAndInsert 3 2 0 / 159 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 190 = 0.00526 0.00114 # Closing gap before 129 # generation 38: best score out of 20: T0287.try5-scwrl 192.43916 cost/residue, 194 clashes 0.16236 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 20 / 96 = 0.20833 0.00630 ## JiggleSubtree 0 3 2 / 54 = 0.03704 0.00269 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 1 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 5 42 14 / 89 = 0.15730 0.00475 ## TweakPhiSegment 2 33 11 / 65 = 0.16923 0.00367 ## TweakPsiSubtree 0 20 13 / 49 = 0.26531 0.00206 ## TweakPsiSegment 0 62 46 / 122 = 0.37705 0.00723 ## TweakPsiPhiSubtree 14 58 28 / 141 = 0.19858 0.00916 ## TweakPsiPhiSegment 10 63 34 / 130 = 0.26154 0.00736 ## TweakHbondSubtree 1 25 14 / 102 = 0.13725 0.00652 ## TweakHbondSegment 1 9 6 / 36 = 0.16667 0.00501 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 32 25 / 69 = 0.36232 0.00319 ## OneRotamer 0 14 1 / 54 = 0.01852 0.00254 ## ClashingRotamer 0 2 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 56 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 166 = 0.00602 0.00190 ## CloseGap 0 7 1 / 170 = 0.00588 0.00040 ## HealGap 0 13 5 / 177 = 0.02825 0.00121 ## MoveGap 0 0 0 / 150 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 183 = 0.00546 0.00123 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 665 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 195 = 0.01026 0.00573 ## TwoFragment 0 1 0 / 183 = 0.00000 0.00000 ## CrossOver 9 30 12 / 322 = 0.03727 0.02498 ## CrossAndInsert 3 2 0 / 160 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 195 = 0.00513 0.00111 # generation 39: best score out of 20: T0287.try5-scwrl 192.35973 cost/residue, 196 clashes 0.16531 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 32 21 / 99 = 0.21212 0.00639 ## JiggleSubtree 0 4 3 / 56 = 0.05357 0.00649 ## JiggleSegment 1 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 1 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 6 42 14 / 89 = 0.15730 0.00475 ## TweakPhiSegment 2 34 13 / 70 = 0.18571 0.00413 ## TweakPsiSubtree 0 20 13 / 50 = 0.26000 0.00201 ## TweakPsiSegment 0 63 49 / 131 = 0.37405 0.00687 ## TweakPsiPhiSubtree 15 61 30 / 150 = 0.20000 0.00915 ## TweakPsiPhiSegment 11 65 36 / 133 = 0.27068 0.00818 ## TweakHbondSubtree 1 25 14 / 103 = 0.13592 0.00645 ## TweakHbondSegment 1 9 6 / 43 = 0.13953 0.00420 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 34 25 / 71 = 0.35211 0.00310 ## OneRotamer 0 15 1 / 57 = 0.01754 0.00240 ## ClashingRotamer 0 2 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 57 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 168 = 0.00595 0.00188 ## CloseGap 0 7 1 / 173 = 0.00578 0.00039 ## HealGap 0 14 6 / 182 = 0.03297 0.00120 ## MoveGap 0 0 0 / 154 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 186 = 0.00538 0.00121 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 683 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 198 = 0.01010 0.00565 ## TwoFragment 0 1 0 / 186 = 0.00000 0.00000 ## CrossOver 9 30 12 / 325 = 0.03692 0.02475 ## CrossAndInsert 3 2 0 / 160 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 199 = 0.00503 0.00108 # Closing gap before 184 next to short segment # Closing gap before 54 without wiggling. # generation 40: best score out of 20: T0287.try5-scwrl 191.77142 cost/residue, 196 clashes 0.16406 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 24 / 103 = 0.23301 0.00638 ## JiggleSubtree 0 6 5 / 64 = 0.07812 0.01854 ## JiggleSegment 1 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 1 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 6 43 14 / 91 = 0.15385 0.00465 ## TweakPhiSegment 2 37 16 / 77 = 0.20779 0.00386 ## TweakPsiSubtree 0 20 13 / 52 = 0.25000 0.00194 ## TweakPsiSegment 0 66 54 / 139 = 0.38849 0.00736 ## TweakPsiPhiSubtree 16 63 32 / 153 = 0.20915 0.00928 ## TweakPsiPhiSegment 12 65 38 / 137 = 0.27737 0.00823 ## TweakHbondSubtree 1 26 15 / 108 = 0.13889 0.00635 ## TweakHbondSegment 1 9 6 / 45 = 0.13333 0.00401 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 35 26 / 72 = 0.36111 0.00309 ## OneRotamer 0 15 1 / 57 = 0.01754 0.00240 ## ClashingRotamer 0 2 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 57 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 175 = 0.00571 0.00180 ## CloseGap 0 7 1 / 179 = 0.00559 0.00038 ## HealGap 0 14 6 / 185 = 0.03243 0.00118 ## MoveGap 0 0 0 / 156 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 192 = 0.00521 0.00117 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 694 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 201 = 0.00995 0.00556 ## TwoFragment 0 1 0 / 189 = 0.00000 0.00000 ## CrossOver 9 30 12 / 332 = 0.03614 0.02423 ## CrossAndInsert 4 2 0 / 160 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 201 = 0.00498 0.00107 # Closing gap before 14 without wiggling. # generation 41: best score out of 20: T0287.try5-scwrl 191.77142 cost/residue, 196 clashes 0.16406 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 25 / 105 = 0.23810 0.00626 ## JiggleSubtree 0 9 7 / 82 = 0.08537 0.02083 ## JiggleSegment 1 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 1 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 45 15 / 93 = 0.16129 0.00700 ## TweakPhiSegment 2 39 16 / 80 = 0.20000 0.00372 ## TweakPsiSubtree 0 21 13 / 53 = 0.24528 0.00190 ## TweakPsiSegment 0 69 54 / 144 = 0.37500 0.00710 ## TweakPsiPhiSubtree 17 65 32 / 157 = 0.20382 0.00904 ## TweakPsiPhiSegment 14 67 39 / 139 = 0.28058 0.00829 ## TweakHbondSubtree 1 26 16 / 111 = 0.14414 0.00689 ## TweakHbondSegment 1 9 9 / 49 = 0.18367 0.00513 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 35 26 / 72 = 0.36111 0.00309 ## OneRotamer 0 15 1 / 57 = 0.01754 0.00240 ## ClashingRotamer 0 2 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 58 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 180 = 0.00556 0.00175 ## CloseGap 0 7 1 / 182 = 0.00549 0.00037 ## HealGap 0 14 6 / 186 = 0.03226 0.00117 ## MoveGap 0 0 0 / 159 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 195 = 0.00513 0.00115 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 706 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 206 = 0.00971 0.00543 ## TwoFragment 0 1 0 / 195 = 0.00000 0.00000 ## CrossOver 9 30 12 / 335 = 0.03582 0.02401 ## CrossAndInsert 4 2 0 / 162 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 206 = 0.00485 0.00105 # Closing gap before 171 without wiggling. # Closing gap before 107 next to short segment # generation 42: best score out of 20: T0287.try5-scwrl 191.72499 cost/residue, 196 clashes 0.16461 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 37 26 / 112 = 0.23214 0.00590 ## JiggleSubtree 0 9 8 / 93 = 0.08602 0.01848 ## JiggleSegment 1 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 1 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 6 47 15 / 97 = 0.15464 0.00671 ## TweakPhiSegment 2 40 16 / 83 = 0.19277 0.00358 ## TweakPsiSubtree 0 21 13 / 54 = 0.24074 0.00186 ## TweakPsiSegment 0 71 55 / 152 = 0.36184 0.00711 ## TweakPsiPhiSubtree 19 66 33 / 160 = 0.20625 0.00911 ## TweakPsiPhiSegment 15 68 41 / 141 = 0.29078 0.00939 ## TweakHbondSubtree 1 30 21 / 119 = 0.17647 0.00797 ## TweakHbondSegment 1 11 10 / 53 = 0.18868 0.00580 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 35 26 / 75 = 0.34667 0.00297 ## OneRotamer 0 15 1 / 58 = 0.01724 0.00236 ## ClashingRotamer 0 2 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 59 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 182 = 0.00549 0.00173 ## CloseGap 0 7 1 / 186 = 0.00538 0.00036 ## HealGap 0 14 6 / 188 = 0.03191 0.00116 ## MoveGap 0 0 0 / 163 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 199 = 0.00503 0.00113 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 717 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 208 = 0.00962 0.00538 ## TwoFragment 0 1 0 / 197 = 0.00000 0.00000 ## CrossOver 9 30 12 / 338 = 0.03550 0.02380 ## CrossAndInsert 4 2 0 / 167 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 210 = 0.00476 0.00103 # generation 43: best score out of 20: T0287.try5-scwrl 191.57272 cost/residue, 195 clashes 0.16890 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 27 / 117 = 0.23077 0.00570 ## JiggleSubtree 0 11 10 / 111 = 0.09009 0.01794 ## JiggleSegment 1 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 16 = 0.00000 0.00000 ## TweakPhiSubtree 6 50 16 / 103 = 0.15534 0.00656 ## TweakPhiSegment 2 40 16 / 83 = 0.19277 0.00358 ## TweakPsiSubtree 0 21 13 / 55 = 0.23636 0.00183 ## TweakPsiSegment 0 73 58 / 155 = 0.37419 0.00706 ## TweakPsiPhiSubtree 19 67 34 / 162 = 0.20988 0.00915 ## TweakPsiPhiSegment 17 71 46 / 150 = 0.30667 0.00930 ## TweakHbondSubtree 1 33 24 / 125 = 0.19200 0.00844 ## TweakHbondSegment 1 13 12 / 57 = 0.21053 0.00576 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 35 26 / 76 = 0.34211 0.00293 ## OneRotamer 0 15 1 / 59 = 0.01695 0.00232 ## ClashingRotamer 0 2 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 61 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 183 = 0.00546 0.00172 ## CloseGap 0 7 1 / 191 = 0.00524 0.00035 ## HealGap 0 14 6 / 194 = 0.03093 0.00113 ## MoveGap 0 0 0 / 166 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 202 = 0.00495 0.00111 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 726 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 209 = 0.00957 0.00535 ## TwoFragment 0 1 0 / 198 = 0.00000 0.00000 ## CrossOver 9 30 12 / 339 = 0.03540 0.02373 ## CrossAndInsert 4 2 0 / 172 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 213 = 0.00469 0.00101 # Closing gap before 184 next to short segment # generation 44: best score out of 20: T0287.try5-scwrl 191.56319 cost/residue, 196 clashes 0.16533 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 27 / 118 = 0.22881 0.00565 ## JiggleSubtree 0 12 11 / 119 = 0.09244 0.01721 ## JiggleSegment 1 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 6 52 16 / 108 = 0.14815 0.00626 ## TweakPhiSegment 2 42 17 / 88 = 0.19318 0.00369 ## TweakPsiSubtree 0 21 14 / 56 = 0.25000 0.00182 ## TweakPsiSegment 0 74 58 / 156 = 0.37179 0.00702 ## TweakPsiPhiSubtree 20 68 35 / 165 = 0.21212 0.00903 ## TweakPsiPhiSegment 17 72 47 / 154 = 0.30519 0.00921 ## TweakHbondSubtree 1 36 26 / 130 = 0.20000 0.00946 ## TweakHbondSegment 1 14 13 / 64 = 0.20312 0.00515 ## TweakMultimer 27 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 36 27 / 79 = 0.34177 0.00286 ## OneRotamer 0 15 1 / 60 = 0.01667 0.00228 ## ClashingRotamer 0 2 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 61 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 184 = 0.00543 0.00172 ## CloseGap 0 7 1 / 197 = 0.00508 0.00034 ## HealGap 0 14 6 / 197 = 0.03046 0.00111 ## MoveGap 0 0 0 / 168 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 205 = 0.00488 0.00110 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 747 = 0.00000 0.00000 ## InsertFragment 0 10 2 / 211 = 0.00948 0.00530 ## TwoFragment 0 1 0 / 202 = 0.00000 0.00000 ## CrossOver 9 30 12 / 343 = 0.03499 0.02345 ## CrossAndInsert 4 2 0 / 174 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 216 = 0.00463 0.00100 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # generation 45: best score out of 20: T0287.try5-scwrl 191.47304 cost/residue, 196 clashes 0.16888 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 27 / 120 = 0.22500 0.00556 ## JiggleSubtree 0 12 11 / 128 = 0.08594 0.01600 ## JiggleSegment 1 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 39 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 7 53 19 / 113 = 0.16814 0.00654 ## TweakPhiSegment 2 43 17 / 91 = 0.18681 0.00357 ## TweakPsiSubtree 0 23 15 / 58 = 0.25862 0.00258 ## TweakPsiSegment 0 74 58 / 157 = 0.36943 0.00697 ## TweakPsiPhiSubtree 20 71 38 / 170 = 0.22353 0.00948 ## TweakPsiPhiSegment 18 74 49 / 158 = 0.31013 0.00976 ## TweakHbondSubtree 1 38 27 / 135 = 0.20000 0.00944 ## TweakHbondSegment 1 14 14 / 71 = 0.19718 0.00497 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 36 27 / 79 = 0.34177 0.00286 ## OneRotamer 0 16 1 / 62 = 0.01613 0.00221 ## ClashingRotamer 0 2 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 64 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 193 = 0.00518 0.00164 ## CloseGap 0 7 1 / 202 = 0.00495 0.00033 ## HealGap 0 14 6 / 202 = 0.02970 0.00108 ## MoveGap 0 0 0 / 172 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 211 = 0.00474 0.00107 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 758 = 0.00000 0.00000 ## InsertFragment 0 10 3 / 214 = 0.01402 0.00540 ## TwoFragment 0 1 0 / 203 = 0.00000 0.00000 ## CrossOver 9 30 12 / 345 = 0.03478 0.02332 ## CrossAndInsert 4 2 0 / 176 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 220 = 0.00455 0.00098 # Closing gap before 184 next to short segment # generation 46: best score out of 20: T0287.try5-scwrl 191.38020 cost/residue, 196 clashes 0.16804 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 28 / 124 = 0.22581 0.00572 ## JiggleSubtree 0 13 11 / 136 = 0.08088 0.01506 ## JiggleSegment 1 1 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 7 56 21 / 117 = 0.17949 0.00743 ## TweakPhiSegment 2 43 17 / 92 = 0.18478 0.00353 ## TweakPsiSubtree 0 23 15 / 59 = 0.25424 0.00254 ## TweakPsiSegment 0 77 59 / 163 = 0.36196 0.00672 ## TweakPsiPhiSubtree 20 72 39 / 172 = 0.22674 0.00954 ## TweakPsiPhiSegment 19 75 49 / 163 = 0.30061 0.00946 ## TweakHbondSubtree 1 38 28 / 142 = 0.19718 0.00898 ## TweakHbondSegment 1 14 14 / 72 = 0.19444 0.00490 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 38 27 / 82 = 0.32927 0.00275 ## OneRotamer 0 16 1 / 63 = 0.01587 0.00217 ## ClashingRotamer 0 2 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 64 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 199 = 0.00503 0.00159 ## CloseGap 0 7 1 / 203 = 0.00493 0.00033 ## HealGap 0 14 6 / 208 = 0.02885 0.00105 ## MoveGap 0 0 0 / 175 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 215 = 0.00465 0.00105 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 766 = 0.00000 0.00000 ## InsertFragment 0 10 3 / 219 = 0.01370 0.00528 ## TwoFragment 0 1 0 / 208 = 0.00000 0.00000 ## CrossOver 9 30 12 / 354 = 0.03390 0.02272 ## CrossAndInsert 4 2 0 / 178 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 226 = 0.00442 0.00096 # Closing gap before 184 next to short segment # Closing gap before 192 next to short segment # generation 47: best score out of 20: T0287.try5-scwrl 191.16800 cost/residue, 193 clashes 0.16917 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 28 / 129 = 0.21705 0.00549 ## JiggleSubtree 0 14 12 / 147 = 0.08163 0.01538 ## JiggleSegment 1 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 7 57 21 / 124 = 0.16935 0.00701 ## TweakPhiSegment 2 43 17 / 93 = 0.18280 0.00349 ## TweakPsiSubtree 0 25 17 / 62 = 0.27419 0.00262 ## TweakPsiSegment 0 79 61 / 167 = 0.36527 0.00680 ## TweakPsiPhiSubtree 20 75 40 / 177 = 0.22599 0.00938 ## TweakPsiPhiSegment 20 78 51 / 169 = 0.30178 0.00960 ## TweakHbondSubtree 1 40 30 / 150 = 0.20000 0.00865 ## TweakHbondSegment 1 14 14 / 76 = 0.18421 0.00465 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 39 28 / 83 = 0.33735 0.00287 ## OneRotamer 0 16 1 / 63 = 0.01587 0.00217 ## ClashingRotamer 0 2 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 65 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 205 = 0.00488 0.00154 ## CloseGap 0 7 1 / 205 = 0.00488 0.00033 ## HealGap 0 14 6 / 208 = 0.02885 0.00105 ## MoveGap 0 0 0 / 178 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 219 = 0.00457 0.00103 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 777 = 0.00000 0.00000 ## InsertFragment 0 10 3 / 223 = 0.01345 0.00518 ## TwoFragment 0 1 0 / 211 = 0.00000 0.00000 ## CrossOver 10 30 12 / 356 = 0.03371 0.02260 ## CrossAndInsert 4 2 0 / 182 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 229 = 0.00437 0.00094 # Closing gap before 184 next to short segment # Closing gap before 107 next to short segment # Closing gap before 184 next to short segment # generation 48: best score out of 20: T0287.try5-scwrl 190.99600 cost/residue, 194 clashes 0.16819 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 28 / 129 = 0.21705 0.00549 ## JiggleSubtree 0 17 15 / 161 = 0.09317 0.01502 ## JiggleSegment 1 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 8 61 24 / 131 = 0.18321 0.01003 ## TweakPhiSegment 2 43 17 / 95 = 0.17895 0.00342 ## TweakPsiSubtree 0 26 18 / 63 = 0.28571 0.00685 ## TweakPsiSegment 0 79 61 / 169 = 0.36095 0.00671 ## TweakPsiPhiSubtree 20 77 42 / 183 = 0.22951 0.00934 ## TweakPsiPhiSegment 22 80 54 / 177 = 0.30508 0.00967 ## TweakHbondSubtree 1 42 32 / 157 = 0.20382 0.00986 ## TweakHbondSegment 1 15 15 / 79 = 0.18987 0.00477 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 39 28 / 84 = 0.33333 0.00284 ## OneRotamer 0 16 1 / 63 = 0.01587 0.00217 ## ClashingRotamer 0 2 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 67 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 210 = 0.00476 0.00150 ## CloseGap 0 8 1 / 208 = 0.00481 0.00032 ## HealGap 0 14 7 / 213 = 0.03286 0.00104 ## MoveGap 0 0 0 / 178 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 221 = 0.00452 0.00102 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 792 = 0.00000 0.00000 ## InsertFragment 0 10 3 / 229 = 0.01310 0.00505 ## TwoFragment 0 1 0 / 212 = 0.00000 0.00000 ## CrossOver 10 31 13 / 358 = 0.03631 0.02272 ## CrossAndInsert 4 2 0 / 184 = 0.00000 0.00000 ## ReduceClash 0 4 1 / 231 = 0.00433 0.00093 # Closing gap before 184 next to short segment # generation 49: best score out of 20: T0287.try5-scwrl 190.98914 cost/residue, 194 clashes 0.16819 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 28 / 131 = 0.21374 0.00541 ## JiggleSubtree 0 17 15 / 164 = 0.09146 0.01475 ## JiggleSegment 1 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 1 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 8 64 24 / 139 = 0.17266 0.00945 ## TweakPhiSegment 2 43 17 / 95 = 0.17895 0.00342 ## TweakPsiSubtree 0 32 24 / 75 = 0.32000 0.00684 ## TweakPsiSegment 0 79 61 / 172 = 0.35465 0.00660 ## TweakPsiPhiSubtree 20 81 42 / 192 = 0.21875 0.00890 ## TweakPsiPhiSegment 24 82 55 / 185 = 0.29730 0.00935 ## TweakHbondSubtree 1 42 32 / 163 = 0.19632 0.00950 ## TweakHbondSegment 1 16 16 / 81 = 0.19753 0.00502 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 39 28 / 84 = 0.33333 0.00284 ## OneRotamer 0 16 1 / 63 = 0.01587 0.00217 ## ClashingRotamer 0 2 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 69 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 214 = 0.00467 0.00147 ## CloseGap 0 8 1 / 209 = 0.00478 0.00032 ## HealGap 0 14 7 / 214 = 0.03271 0.00104 ## MoveGap 0 0 0 / 181 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 226 = 0.00442 0.00099 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 806 = 0.00000 0.00000 ## InsertFragment 0 10 3 / 231 = 0.01299 0.00500 ## TwoFragment 0 1 0 / 217 = 0.00000 0.00000 ## CrossOver 10 31 13 / 359 = 0.03621 0.02265 ## CrossAndInsert 4 3 1 / 186 = 0.00538 0.00004 ## ReduceClash 0 4 1 / 234 = 0.00427 0.00092 # Closing gap before 149 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # generation 50: best score out of 20: T0287.try5-scwrl 190.98576 cost/residue, 194 clashes 0.16819 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 40 28 / 133 = 0.21053 0.00533 ## JiggleSubtree 0 17 15 / 168 = 0.08929 0.01440 ## JiggleSegment 1 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 1 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 8 65 25 / 146 = 0.17123 0.00900 ## TweakPhiSegment 2 43 17 / 95 = 0.17895 0.00342 ## TweakPsiSubtree 0 38 25 / 88 = 0.28409 0.00584 ## TweakPsiSegment 0 80 62 / 177 = 0.35028 0.00642 ## TweakPsiPhiSubtree 20 82 42 / 196 = 0.21429 0.00872 ## TweakPsiPhiSegment 24 83 55 / 191 = 0.28796 0.00906 ## TweakHbondSubtree 1 43 33 / 167 = 0.19760 0.00932 ## TweakHbondSegment 1 17 16 / 84 = 0.19048 0.00484 ## TweakMultimer 35 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 40 29 / 85 = 0.34118 0.00285 ## OneRotamer 0 16 1 / 66 = 0.01515 0.00208 ## ClashingRotamer 0 2 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 70 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 217 = 0.00461 0.00145 ## CloseGap 0 8 1 / 212 = 0.00472 0.00032 ## HealGap 0 14 7 / 221 = 0.03167 0.00101 ## MoveGap 0 0 0 / 185 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 227 = 0.00441 0.00099 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 816 = 0.00123 0.00002 ## InsertFragment 0 10 3 / 233 = 0.01288 0.00496 ## TwoFragment 0 1 0 / 219 = 0.00000 0.00000 ## CrossOver 10 31 13 / 364 = 0.03571 0.02234 ## CrossAndInsert 4 3 1 / 191 = 0.00524 0.00004 ## ReduceClash 0 4 1 / 235 = 0.00426 0.00092 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # generation 51: best score out of 20: T0287.try5-scwrl 190.85411 cost/residue, 194 clashes 0.16810 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 29 / 135 = 0.21481 0.00543 ## JiggleSubtree 0 17 15 / 175 = 0.08571 0.01382 ## JiggleSegment 1 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 1 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 8 65 25 / 152 = 0.16447 0.00864 ## TweakPhiSegment 2 46 18 / 100 = 0.18000 0.00329 ## TweakPsiSubtree 0 38 26 / 95 = 0.27368 0.00541 ## TweakPsiSegment 0 82 64 / 184 = 0.34783 0.00626 ## TweakPsiPhiSubtree 21 84 43 / 203 = 0.21182 0.00849 ## TweakPsiPhiSegment 26 85 58 / 196 = 0.29592 0.00954 ## TweakHbondSubtree 1 45 35 / 175 = 0.20000 0.00964 ## TweakHbondSegment 1 17 17 / 89 = 0.19101 0.00461 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 6 42 31 / 88 = 0.35227 0.00296 ## OneRotamer 0 16 1 / 66 = 0.01515 0.00208 ## ClashingRotamer 0 2 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 71 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 220 = 0.00455 0.00143 ## CloseGap 0 8 1 / 216 = 0.00463 0.00031 ## HealGap 0 15 8 / 223 = 0.03587 0.00100 ## MoveGap 0 0 0 / 187 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 230 = 0.00435 0.00098 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 826 = 0.00121 0.00002 ## InsertFragment 0 10 3 / 235 = 0.01277 0.00492 ## TwoFragment 0 1 0 / 221 = 0.00000 0.00000 ## CrossOver 10 31 13 / 368 = 0.03533 0.02210 ## CrossAndInsert 4 3 1 / 192 = 0.00521 0.00004 ## ReduceClash 0 4 1 / 237 = 0.00422 0.00091 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # generation 52: best score out of 20: T0287.try5-scwrl 190.74232 cost/residue, 194 clashes 0.16722 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 42 29 / 136 = 0.21324 0.00539 ## JiggleSubtree 0 17 15 / 185 = 0.08108 0.01307 ## JiggleSegment 1 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 0 / 42 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 8 67 26 / 157 = 0.16561 0.00850 ## TweakPhiSegment 2 48 20 / 103 = 0.19417 0.00440 ## TweakPsiSubtree 0 39 26 / 101 = 0.25743 0.00509 ## TweakPsiSegment 0 82 64 / 187 = 0.34225 0.00616 ## TweakPsiPhiSubtree 22 87 43 / 209 = 0.20574 0.00824 ## TweakPsiPhiSegment 27 86 59 / 198 = 0.29798 0.00974 ## TweakHbondSubtree 1 50 37 / 187 = 0.19786 0.00986 ## TweakHbondSegment 1 17 17 / 94 = 0.18085 0.00437 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 43 32 / 89 = 0.35955 0.00294 ## OneRotamer 0 16 1 / 67 = 0.01493 0.00204 ## ClashingRotamer 0 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 72 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 222 = 0.00450 0.00142 ## CloseGap 0 8 1 / 225 = 0.00444 0.00030 ## HealGap 0 16 9 / 226 = 0.03982 0.00100 ## MoveGap 0 0 0 / 187 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 233 = 0.00429 0.00096 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 833 = 0.00120 0.00002 ## InsertFragment 0 10 3 / 236 = 0.01271 0.00490 ## TwoFragment 0 1 0 / 228 = 0.00000 0.00000 ## CrossOver 10 31 13 / 371 = 0.03504 0.02192 ## CrossAndInsert 4 3 1 / 193 = 0.00518 0.00004 ## ReduceClash 0 4 1 / 240 = 0.00417 0.00090 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # generation 53: best score out of 20: T0287.try5-scwrl 190.60130 cost/residue, 194 clashes 0.16803 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 42 29 / 139 = 0.20863 0.00527 ## JiggleSubtree 0 17 15 / 188 = 0.07979 0.01286 ## JiggleSegment 1 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 35 = 0.00000 0.00000 ## OptSegment 0 1 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 8 69 27 / 165 = 0.16364 0.00819 ## TweakPhiSegment 2 49 21 / 108 = 0.19444 0.00446 ## TweakPsiSubtree 0 41 29 / 106 = 0.27358 0.00537 ## TweakPsiSegment 0 82 64 / 188 = 0.34043 0.00613 ## TweakPsiPhiSubtree 22 90 44 / 213 = 0.20657 0.00810 ## TweakPsiPhiSegment 30 89 61 / 210 = 0.29048 0.00988 ## TweakHbondSubtree 1 52 39 / 195 = 0.20000 0.00968 ## TweakHbondSegment 1 19 20 / 99 = 0.20202 0.00454 ## TweakMultimer 36 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 44 33 / 92 = 0.35870 0.00286 ## OneRotamer 0 16 1 / 67 = 0.01493 0.00204 ## ClashingRotamer 0 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 73 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 226 = 0.00442 0.00140 ## CloseGap 0 8 1 / 227 = 0.00441 0.00030 ## HealGap 0 17 9 / 232 = 0.03879 0.00097 ## MoveGap 0 0 0 / 189 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 234 = 0.00427 0.00096 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 44 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 837 = 0.00119 0.00002 ## InsertFragment 0 10 3 / 240 = 0.01250 0.00481 ## TwoFragment 0 1 0 / 232 = 0.00000 0.00000 ## CrossOver 10 31 13 / 375 = 0.03467 0.02169 ## CrossAndInsert 4 3 1 / 197 = 0.00508 0.00003 ## ReduceClash 0 4 1 / 246 = 0.00407 0.00088 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 195 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 192 next to short segment # generation 54: best score out of 20: T0287.try5-scwrl 190.59230 cost/residue, 194 clashes 0.16896 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 31 / 146 = 0.21233 0.00506 ## JiggleSubtree 0 17 15 / 193 = 0.07772 0.01253 ## JiggleSegment 1 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 1 0 / 43 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 8 71 28 / 174 = 0.16092 0.00783 ## TweakPhiSegment 2 50 21 / 112 = 0.18750 0.00430 ## TweakPsiSubtree 0 42 30 / 112 = 0.26786 0.00562 ## TweakPsiSegment 0 82 64 / 190 = 0.33684 0.00606 ## TweakPsiPhiSubtree 22 91 45 / 215 = 0.20930 0.00852 ## TweakPsiPhiSegment 30 93 64 / 218 = 0.29358 0.00984 ## TweakHbondSubtree 2 52 39 / 199 = 0.19598 0.00949 ## TweakHbondSegment 1 20 21 / 102 = 0.20588 0.00469 ## TweakMultimer 37 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 44 33 / 92 = 0.35870 0.00286 ## OneRotamer 0 16 1 / 67 = 0.01493 0.00204 ## ClashingRotamer 0 2 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 74 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 227 = 0.00441 0.00139 ## CloseGap 0 8 1 / 234 = 0.00427 0.00029 ## HealGap 0 17 9 / 237 = 0.03797 0.00095 ## MoveGap 0 0 0 / 193 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 237 = 0.00422 0.00095 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 848 = 0.00118 0.00001 ## InsertFragment 0 10 3 / 241 = 0.01245 0.00479 ## TwoFragment 0 1 0 / 236 = 0.00000 0.00000 ## CrossOver 10 31 13 / 377 = 0.03448 0.02157 ## CrossAndInsert 4 3 1 / 202 = 0.00495 0.00003 ## ReduceClash 0 4 1 / 249 = 0.00402 0.00087 # Closing gap before 184 next to short segment # Closing gap before 104 next to short segment # generation 55: best score out of 20: T0287.try5-scwrl 190.57269 cost/residue, 194 clashes 0.16963 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 46 31 / 148 = 0.20946 0.00499 ## JiggleSubtree 0 17 15 / 197 = 0.07614 0.01228 ## JiggleSegment 1 1 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 37 = 0.00000 0.00000 ## OptSegment 0 1 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 8 73 29 / 180 = 0.16111 0.00756 ## TweakPhiSegment 2 52 21 / 121 = 0.17355 0.00398 ## TweakPsiSubtree 0 45 33 / 119 = 0.27731 0.00535 ## TweakPsiSegment 0 84 64 / 192 = 0.33333 0.00600 ## TweakPsiPhiSubtree 22 92 46 / 219 = 0.21005 0.00844 ## TweakPsiPhiSegment 31 96 66 / 224 = 0.29464 0.00995 ## TweakHbondSubtree 2 53 39 / 205 = 0.19024 0.00921 ## TweakHbondSegment 1 21 21 / 109 = 0.19266 0.00439 ## TweakMultimer 38 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 45 33 / 94 = 0.35106 0.00280 ## OneRotamer 0 16 1 / 67 = 0.01493 0.00204 ## ClashingRotamer 0 2 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 74 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 230 = 0.00435 0.00137 ## CloseGap 0 8 1 / 236 = 0.00424 0.00029 ## HealGap 0 17 9 / 238 = 0.03782 0.00095 ## MoveGap 0 0 0 / 194 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 241 = 0.00415 0.00093 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 860 = 0.00116 0.00001 ## InsertFragment 0 10 3 / 243 = 0.01235 0.00475 ## TwoFragment 0 1 0 / 242 = 0.00000 0.00000 ## CrossOver 10 31 13 / 383 = 0.03394 0.02123 ## CrossAndInsert 4 3 1 / 202 = 0.00495 0.00003 ## ReduceClash 0 4 1 / 250 = 0.00400 0.00086 # Closing gap before 184 next to short segment # generation 56: best score out of 20: T0287.try5-scwrl 190.45657 cost/residue, 194 clashes 0.16885 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 31 / 149 = 0.20805 0.00495 ## JiggleSubtree 0 17 15 / 203 = 0.07389 0.01191 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 1 0 / 47 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 8 74 29 / 187 = 0.15508 0.00728 ## TweakPhiSegment 2 52 21 / 122 = 0.17213 0.00395 ## TweakPsiSubtree 0 46 33 / 123 = 0.26829 0.00517 ## TweakPsiSegment 0 89 68 / 200 = 0.34000 0.00618 ## TweakPsiPhiSubtree 23 93 47 / 222 = 0.21171 0.00836 ## TweakPsiPhiSegment 32 96 66 / 228 = 0.28947 0.00978 ## TweakHbondSubtree 2 54 41 / 213 = 0.19249 0.00893 ## TweakHbondSegment 1 23 22 / 111 = 0.19820 0.00554 ## TweakMultimer 39 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 47 35 / 98 = 0.35714 0.00309 ## OneRotamer 0 16 1 / 69 = 0.01449 0.00199 ## ClashingRotamer 0 2 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 76 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 235 = 0.00426 0.00134 ## CloseGap 0 8 1 / 239 = 0.00418 0.00028 ## HealGap 0 18 9 / 243 = 0.03704 0.00093 ## MoveGap 0 0 0 / 199 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 247 = 0.00405 0.00091 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 865 = 0.00116 0.00001 ## InsertFragment 0 10 3 / 250 = 0.01200 0.00462 ## TwoFragment 0 1 0 / 242 = 0.00000 0.00000 ## CrossOver 10 31 13 / 385 = 0.03377 0.02112 ## CrossAndInsert 4 3 1 / 206 = 0.00485 0.00003 ## ReduceClash 0 4 1 / 252 = 0.00397 0.00086 # generation 57: best score out of 20: T0287.try5-scwrl 190.45657 cost/residue, 194 clashes 0.16885 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 31 / 152 = 0.20395 0.00486 ## JiggleSubtree 0 17 15 / 209 = 0.07177 0.01157 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 40 = 0.00000 0.00000 ## OptSegment 0 1 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 8 76 29 / 192 = 0.15104 0.00709 ## TweakPhiSegment 2 53 21 / 124 = 0.16935 0.00389 ## TweakPsiSubtree 0 49 35 / 133 = 0.26316 0.00501 ## TweakPsiSegment 0 91 68 / 204 = 0.33333 0.00606 ## TweakPsiPhiSubtree 24 95 48 / 232 = 0.20690 0.00802 ## TweakPsiPhiSegment 33 98 68 / 235 = 0.28936 0.00983 ## TweakHbondSubtree 2 54 41 / 220 = 0.18636 0.00865 ## TweakHbondSegment 1 23 23 / 116 = 0.19828 0.00531 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 48 36 / 101 = 0.35644 0.00300 ## OneRotamer 0 16 1 / 69 = 0.01449 0.00199 ## ClashingRotamer 0 2 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 77 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 236 = 0.00424 0.00134 ## CloseGap 0 8 1 / 240 = 0.00417 0.00028 ## HealGap 0 18 10 / 246 = 0.04065 0.00094 ## MoveGap 0 0 0 / 201 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 249 = 0.00402 0.00090 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 51 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 876 = 0.00114 0.00001 ## InsertFragment 0 10 3 / 252 = 0.01190 0.00458 ## TwoFragment 0 1 0 / 245 = 0.00000 0.00000 ## CrossOver 10 31 13 / 385 = 0.03377 0.02112 ## CrossAndInsert 4 3 1 / 209 = 0.00478 0.00003 ## ReduceClash 0 4 1 / 255 = 0.00392 0.00085 # Closing gap before 184 next to short segment # generation 58: best score out of 20: T0287.try5-scwrl 190.42065 cost/residue, 194 clashes 0.16885 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 32 / 155 = 0.20645 0.00478 ## JiggleSubtree 0 17 15 / 211 = 0.07109 0.01146 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 48 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 8 78 30 / 203 = 0.14778 0.00683 ## TweakPhiSegment 2 54 22 / 129 = 0.17054 0.00374 ## TweakPsiSubtree 0 52 37 / 140 = 0.26429 0.00476 ## TweakPsiSegment 0 92 68 / 207 = 0.32850 0.00597 ## TweakPsiPhiSubtree 25 95 48 / 233 = 0.20601 0.00798 ## TweakPsiPhiSegment 34 101 71 / 239 = 0.29707 0.00993 ## TweakHbondSubtree 2 55 42 / 226 = 0.18584 0.00846 ## TweakHbondSegment 1 24 23 / 119 = 0.19328 0.00518 ## TweakMultimer 40 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 51 39 / 110 = 0.35455 0.00309 ## OneRotamer 0 17 2 / 70 = 0.02857 0.00206 ## ClashingRotamer 0 2 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 4 5 0 / 77 = 0.00000 0.00000 ## ReduceBreak 0 6 1 / 239 = 0.00418 0.00132 ## CloseGap 0 8 1 / 242 = 0.00413 0.00028 ## HealGap 0 18 10 / 248 = 0.04032 0.00094 ## MoveGap 0 0 0 / 205 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 251 = 0.00398 0.00090 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 888 = 0.00113 0.00001 ## InsertFragment 0 10 3 / 252 = 0.01190 0.00458 ## TwoFragment 0 1 0 / 250 = 0.00000 0.00000 ## CrossOver 10 31 13 / 387 = 0.03359 0.02101 ## CrossAndInsert 4 3 1 / 213 = 0.00469 0.00003 ## ReduceClash 0 4 1 / 259 = 0.00386 0.00083 # Closing gap before 184 next to short segment # Closing gap before 88 next to short segment # Closing gap before 184 next to short segment # generation 59: best score out of 20: T0287.try5-scwrl 190.39725 cost/residue, 194 clashes 0.16905 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 33 / 157 = 0.21019 0.00475 ## JiggleSubtree 0 17 15 / 218 = 0.06881 0.01109 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 50 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 9 79 30 / 208 = 0.14423 0.00667 ## TweakPhiSegment 2 54 22 / 130 = 0.16923 0.00371 ## TweakPsiSubtree 0 54 39 / 144 = 0.27083 0.00469 ## TweakPsiSegment 0 92 68 / 210 = 0.32381 0.00589 ## TweakPsiPhiSubtree 26 97 50 / 237 = 0.21097 0.00817 ## TweakPsiPhiSegment 34 103 73 / 246 = 0.29675 0.00992 ## TweakHbondSubtree 2 58 44 / 236 = 0.18644 0.00817 ## TweakHbondSegment 1 26 25 / 128 = 0.19531 0.00536 ## TweakMultimer 42 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 52 40 / 114 = 0.35088 0.00303 ## OneRotamer 0 17 2 / 73 = 0.02740 0.00198 ## ClashingRotamer 0 2 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 77 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 244 = 0.00820 0.00149 ## CloseGap 0 8 1 / 245 = 0.00408 0.00028 ## HealGap 0 18 10 / 249 = 0.04016 0.00093 ## MoveGap 0 0 0 / 206 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 256 = 0.00391 0.00088 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 898 = 0.00111 0.00001 ## InsertFragment 0 10 3 / 254 = 0.01181 0.00455 ## TwoFragment 0 1 0 / 251 = 0.00000 0.00000 ## CrossOver 10 31 13 / 388 = 0.03351 0.02096 ## CrossAndInsert 4 3 1 / 217 = 0.00461 0.00003 ## ReduceClash 0 4 1 / 261 = 0.00383 0.00083 # Closing gap before 184 next to short segment # Closing gap before 171 # generation 60: best score out of 20: T0287.try5-scwrl 190.35693 cost/residue, 193 clashes 0.16911 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 33 / 160 = 0.20625 0.00466 ## JiggleSubtree 0 18 16 / 228 = 0.07018 0.01062 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 53 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 22 = 0.00000 0.00000 ## TweakPhiSubtree 9 80 30 / 214 = 0.14019 0.00648 ## TweakPhiSegment 2 55 22 / 133 = 0.16541 0.00363 ## TweakPsiSubtree 0 57 40 / 148 = 0.27027 0.00457 ## TweakPsiSegment 0 95 69 / 215 = 0.32093 0.00576 ## TweakPsiPhiSubtree 28 98 51 / 245 = 0.20816 0.00793 ## TweakPsiPhiSegment 36 105 75 / 256 = 0.29297 0.00977 ## TweakHbondSubtree 2 58 44 / 239 = 0.18410 0.00807 ## TweakHbondSegment 1 26 25 / 130 = 0.19231 0.00528 ## TweakMultimer 43 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 11 55 42 / 119 = 0.35294 0.00294 ## OneRotamer 0 17 2 / 74 = 0.02703 0.00195 ## ClashingRotamer 0 2 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 79 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 247 = 0.00810 0.00147 ## CloseGap 0 8 1 / 248 = 0.00403 0.00027 ## HealGap 0 18 10 / 253 = 0.03953 0.00092 ## MoveGap 0 0 0 / 208 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 258 = 0.00388 0.00087 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 54 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 904 = 0.00111 0.00001 ## InsertFragment 0 10 3 / 257 = 0.01167 0.00450 ## TwoFragment 0 1 0 / 253 = 0.00000 0.00000 ## CrossOver 10 31 13 / 389 = 0.03342 0.02091 ## CrossAndInsert 4 3 1 / 219 = 0.00457 0.00003 ## ReduceClash 0 4 1 / 264 = 0.00379 0.00082 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # generation 61: best score out of 20: T0287.try5-scwrl 190.35693 cost/residue, 193 clashes 0.16911 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 33 / 161 = 0.20497 0.00463 ## JiggleSubtree 0 18 16 / 233 = 0.06867 0.01039 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 55 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 82 31 / 223 = 0.13901 0.00622 ## TweakPhiSegment 2 55 22 / 137 = 0.16058 0.00352 ## TweakPsiSubtree 0 58 41 / 152 = 0.26974 0.00449 ## TweakPsiSegment 0 97 70 / 220 = 0.31818 0.00569 ## TweakPsiPhiSubtree 28 100 53 / 251 = 0.21116 0.00800 ## TweakPsiPhiSegment 38 105 75 / 262 = 0.28626 0.00955 ## TweakHbondSubtree 2 62 47 / 249 = 0.18876 0.00791 ## TweakHbondSegment 1 27 27 / 136 = 0.19853 0.00522 ## TweakMultimer 44 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 55 43 / 120 = 0.35833 0.00298 ## OneRotamer 0 17 2 / 77 = 0.02597 0.00188 ## ClashingRotamer 0 2 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 79 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 251 = 0.00797 0.00145 ## CloseGap 0 8 1 / 251 = 0.00398 0.00027 ## HealGap 0 18 10 / 254 = 0.03937 0.00091 ## MoveGap 0 0 0 / 211 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 261 = 0.00383 0.00086 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 910 = 0.00110 0.00001 ## InsertFragment 0 10 3 / 263 = 0.01141 0.00439 ## TwoFragment 0 1 0 / 255 = 0.00000 0.00000 ## CrossOver 11 31 13 / 394 = 0.03299 0.02064 ## CrossAndInsert 4 3 1 / 219 = 0.00457 0.00003 ## ReduceClash 0 4 1 / 267 = 0.00375 0.00081 # Closing gap before 107 next to short segment # Closing gap before 192 next to short segment # Closing gap before 184 next to short segment # generation 62: best score out of 20: T0287.try5-scwrl 190.29924 cost/residue, 192 clashes 0.16936 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 33 / 165 = 0.20000 0.00452 ## JiggleSubtree 0 18 16 / 238 = 0.06723 0.01017 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 56 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 85 32 / 227 = 0.14097 0.00611 ## TweakPhiSegment 2 55 22 / 139 = 0.15827 0.00347 ## TweakPsiSubtree 0 62 45 / 161 = 0.27950 0.00469 ## TweakPsiSegment 0 98 71 / 223 = 0.31839 0.00563 ## TweakPsiPhiSubtree 29 102 55 / 261 = 0.21073 0.00778 ## TweakPsiPhiSegment 40 106 76 / 270 = 0.28148 0.00948 ## TweakHbondSubtree 2 64 47 / 258 = 0.18217 0.00764 ## TweakHbondSegment 1 28 27 / 141 = 0.19149 0.00504 ## TweakMultimer 46 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 14 56 43 / 122 = 0.35246 0.00293 ## OneRotamer 0 17 2 / 80 = 0.02500 0.00181 ## ClashingRotamer 0 2 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 79 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 258 = 0.00775 0.00141 ## CloseGap 0 8 1 / 254 = 0.00394 0.00027 ## HealGap 0 18 10 / 254 = 0.03937 0.00091 ## MoveGap 0 0 0 / 213 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 262 = 0.00382 0.00086 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 914 = 0.00109 0.00001 ## InsertFragment 0 10 3 / 266 = 0.01128 0.00434 ## TwoFragment 0 1 0 / 258 = 0.00000 0.00000 ## CrossOver 11 32 14 / 401 = 0.03491 0.02036 ## CrossAndInsert 4 3 1 / 220 = 0.00455 0.00003 ## ReduceClash 0 4 1 / 270 = 0.00370 0.00080 # Closing gap before 184 next to short segment # generation 63: best score out of 20: T0287.try5-scwrl 190.29420 cost/residue, 192 clashes 0.16936 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 34 / 169 = 0.20118 0.00441 ## JiggleSubtree 0 18 16 / 248 = 0.06452 0.00976 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 56 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 86 33 / 233 = 0.14163 0.00605 ## TweakPhiSegment 2 55 22 / 140 = 0.15714 0.00344 ## TweakPsiSubtree 0 63 46 / 164 = 0.28049 0.00471 ## TweakPsiSegment 0 100 74 / 229 = 0.32314 0.00553 ## TweakPsiPhiSubtree 30 102 55 / 266 = 0.20677 0.00764 ## TweakPsiPhiSegment 41 108 76 / 279 = 0.27240 0.00917 ## TweakHbondSubtree 2 67 49 / 266 = 0.18421 0.00756 ## TweakHbondSegment 1 32 27 / 150 = 0.18000 0.00473 ## TweakMultimer 47 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 58 47 / 127 = 0.37008 0.00295 ## OneRotamer 0 17 2 / 80 = 0.02500 0.00181 ## ClashingRotamer 0 2 0 / 49 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 81 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 263 = 0.00760 0.00138 ## CloseGap 0 8 1 / 255 = 0.00392 0.00026 ## HealGap 0 18 10 / 256 = 0.03906 0.00091 ## MoveGap 0 0 0 / 216 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 264 = 0.00379 0.00085 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 921 = 0.00109 0.00001 ## InsertFragment 0 10 3 / 270 = 0.01111 0.00428 ## TwoFragment 0 1 0 / 259 = 0.00000 0.00000 ## CrossOver 11 33 15 / 404 = 0.03713 0.02026 ## CrossAndInsert 4 3 1 / 223 = 0.00448 0.00003 ## ReduceClash 0 4 1 / 271 = 0.00369 0.00080 # Closing gap before 184 next to short segment # Closing gap before 184 next to short segment # generation 64: best score out of 20: T0287.try5-scwrl 190.09932 cost/residue, 191 clashes 0.16575 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 49 34 / 169 = 0.20118 0.00441 ## JiggleSubtree 0 18 16 / 256 = 0.06250 0.00946 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 57 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 88 33 / 236 = 0.13983 0.00597 ## TweakPhiSegment 2 56 22 / 142 = 0.15493 0.00340 ## TweakPsiSubtree 1 65 46 / 167 = 0.27545 0.00462 ## TweakPsiSegment 0 100 74 / 231 = 0.32035 0.00549 ## TweakPsiPhiSubtree 31 103 56 / 273 = 0.20513 0.00757 ## TweakPsiPhiSegment 44 111 81 / 291 = 0.27835 0.00959 ## TweakHbondSubtree 2 69 51 / 273 = 0.18681 0.00770 ## TweakHbondSegment 1 34 30 / 158 = 0.18987 0.00660 ## TweakMultimer 47 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 59 48 / 130 = 0.36923 0.00298 ## OneRotamer 0 18 3 / 81 = 0.03704 0.00456 ## ClashingRotamer 0 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 82 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 270 = 0.00741 0.00135 ## CloseGap 0 8 1 / 258 = 0.00388 0.00026 ## HealGap 0 18 10 / 259 = 0.03861 0.00090 ## MoveGap 0 0 0 / 219 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 269 = 0.00372 0.00084 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 929 = 0.00108 0.00001 ## InsertFragment 0 10 3 / 271 = 0.01107 0.00426 ## TwoFragment 0 1 0 / 261 = 0.00000 0.00000 ## CrossOver 11 33 15 / 408 = 0.03676 0.02006 ## CrossAndInsert 4 3 1 / 225 = 0.00444 0.00003 ## ReduceClash 0 4 1 / 273 = 0.00366 0.00079 # generation 65: best score out of 20: T0287.try5-scwrl 189.91850 cost/residue, 188 clashes 0.16575 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 51 34 / 171 = 0.19883 0.00436 ## JiggleSubtree 0 18 16 / 261 = 0.06130 0.00928 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 58 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 89 34 / 238 = 0.14286 0.00604 ## TweakPhiSegment 2 56 23 / 144 = 0.15972 0.00341 ## TweakPsiSubtree 1 65 46 / 169 = 0.27219 0.00457 ## TweakPsiSegment 0 103 76 / 235 = 0.32340 0.00539 ## TweakPsiPhiSubtree 32 104 56 / 277 = 0.20217 0.00746 ## TweakPsiPhiSegment 46 113 83 / 296 = 0.28041 0.00952 ## TweakHbondSubtree 2 70 51 / 276 = 0.18478 0.00762 ## TweakHbondSegment 1 34 30 / 163 = 0.18405 0.00639 ## TweakMultimer 51 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 15 61 50 / 134 = 0.37313 0.00292 ## OneRotamer 0 21 6 / 100 = 0.06000 0.00799 ## ClashingRotamer 0 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 84 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 273 = 0.00733 0.00133 ## CloseGap 0 8 1 / 260 = 0.00385 0.00026 ## HealGap 0 18 10 / 261 = 0.03831 0.00089 ## MoveGap 0 0 0 / 225 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 273 = 0.00366 0.00082 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 937 = 0.00107 0.00001 ## InsertFragment 0 10 3 / 274 = 0.01095 0.00422 ## TwoFragment 0 1 0 / 262 = 0.00000 0.00000 ## CrossOver 11 33 15 / 412 = 0.03641 0.01986 ## CrossAndInsert 4 3 1 / 229 = 0.00437 0.00003 ## ReduceClash 0 4 1 / 276 = 0.00362 0.00078 # Healing gap before (T0287)N57 residual break only 5.0950357e-02 # Closing gap before 184 next to short segment # generation 66: best score out of 20: T0287.try5-scwrl 189.73488 cost/residue, 187 clashes 0.16803 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 51 34 / 172 = 0.19767 0.00433 ## JiggleSubtree 0 19 17 / 265 = 0.06415 0.00983 ## JiggleSegment 1 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 41 = 0.00000 0.00000 ## OptSegment 0 1 0 / 58 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 90 34 / 244 = 0.13934 0.00589 ## TweakPhiSegment 2 57 24 / 146 = 0.16438 0.00337 ## TweakPsiSubtree 1 65 47 / 173 = 0.27168 0.00446 ## TweakPsiSegment 0 105 77 / 238 = 0.32353 0.00537 ## TweakPsiPhiSubtree 32 104 56 / 279 = 0.20072 0.00741 ## TweakPsiPhiSegment 47 116 84 / 306 = 0.27451 0.00924 ## TweakHbondSubtree 2 71 52 / 279 = 0.18638 0.00793 ## TweakHbondSegment 1 35 30 / 171 = 0.17544 0.00609 ## TweakMultimer 53 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 16 63 51 / 139 = 0.36691 0.00288 ## OneRotamer 0 22 7 / 107 = 0.06542 0.00805 ## ClashingRotamer 0 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 85 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 279 = 0.00717 0.00130 ## CloseGap 0 8 1 / 263 = 0.00380 0.00026 ## HealGap 0 18 10 / 265 = 0.03774 0.00088 ## MoveGap 0 0 0 / 227 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 276 = 0.00362 0.00081 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 945 = 0.00106 0.00001 ## InsertFragment 0 10 3 / 276 = 0.01087 0.00419 ## TwoFragment 0 1 0 / 265 = 0.00000 0.00000 ## CrossOver 11 33 15 / 417 = 0.03597 0.01963 ## CrossAndInsert 4 3 1 / 231 = 0.00433 0.00003 ## ReduceClash 0 4 1 / 281 = 0.00356 0.00077 # Closing gap before 104 next to short segment # generation 67: best score out of 20: T0287.try5-scwrl 189.67705 cost/residue, 187 clashes 0.16803 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 35 / 174 = 0.20115 0.00461 ## JiggleSubtree 0 19 17 / 270 = 0.06296 0.00965 ## JiggleSegment 1 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 0 / 61 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 91 34 / 248 = 0.13710 0.00579 ## TweakPhiSegment 2 58 24 / 147 = 0.16327 0.00335 ## TweakPsiSubtree 1 66 48 / 174 = 0.27586 0.00444 ## TweakPsiSegment 0 107 78 / 243 = 0.32099 0.00527 ## TweakPsiPhiSubtree 32 104 56 / 281 = 0.19929 0.00736 ## TweakPsiPhiSegment 50 119 85 / 314 = 0.27070 0.00901 ## TweakHbondSubtree 2 73 53 / 286 = 0.18531 0.00789 ## TweakHbondSegment 1 36 30 / 175 = 0.17143 0.00595 ## TweakMultimer 56 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 16 65 53 / 143 = 0.37063 0.00290 ## OneRotamer 0 24 9 / 127 = 0.07087 0.00708 ## ClashingRotamer 0 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 86 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 282 = 0.00709 0.00129 ## CloseGap 0 8 1 / 267 = 0.00375 0.00025 ## HealGap 0 18 10 / 267 = 0.03745 0.00087 ## MoveGap 0 0 0 / 227 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 276 = 0.00362 0.00081 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 55 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 954 = 0.00105 0.00001 ## InsertFragment 0 10 3 / 277 = 0.01083 0.00417 ## TwoFragment 0 1 0 / 267 = 0.00000 0.00000 ## CrossOver 11 33 15 / 420 = 0.03571 0.01949 ## CrossAndInsert 4 3 1 / 234 = 0.00427 0.00003 ## ReduceClash 0 4 1 / 285 = 0.00351 0.00076 # Closing gap before 149 # generation 68: best score out of 20: T0287.try5-scwrl 189.61960 cost/residue, 186 clashes 0.16932 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 35 / 177 = 0.19774 0.00454 ## JiggleSubtree 0 19 17 / 276 = 0.06159 0.00944 ## JiggleSegment 1 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 42 = 0.00000 0.00000 ## OptSegment 0 1 0 / 61 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 92 34 / 250 = 0.13600 0.00575 ## TweakPhiSegment 2 58 24 / 149 = 0.16107 0.00330 ## TweakPsiSubtree 1 68 49 / 178 = 0.27528 0.00436 ## TweakPsiSegment 0 110 80 / 248 = 0.32258 0.00581 ## TweakPsiPhiSubtree 32 105 57 / 284 = 0.20070 0.00776 ## TweakPsiPhiSegment 50 121 85 / 321 = 0.26480 0.00881 ## TweakHbondSubtree 2 76 54 / 292 = 0.18493 0.00791 ## TweakHbondSegment 1 37 30 / 183 = 0.16393 0.00569 ## TweakMultimer 57 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 66 54 / 146 = 0.36986 0.00291 ## OneRotamer 0 25 10 / 140 = 0.07143 0.00648 ## ClashingRotamer 0 2 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 87 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 284 = 0.00704 0.00128 ## CloseGap 0 8 1 / 270 = 0.00370 0.00025 ## HealGap 0 18 10 / 269 = 0.03717 0.00086 ## MoveGap 0 0 0 / 228 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 279 = 0.00358 0.00081 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 57 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 962 = 0.00104 0.00001 ## InsertFragment 0 10 3 / 279 = 0.01075 0.00414 ## TwoFragment 0 1 0 / 268 = 0.00000 0.00000 ## CrossOver 11 33 15 / 426 = 0.03521 0.01921 ## CrossAndInsert 4 3 1 / 237 = 0.00422 0.00003 ## ReduceClash 0 4 1 / 289 = 0.00346 0.00075 # generation 69: best score out of 20: T0287.try5-scwrl 189.50032 cost/residue, 184 clashes 0.16803 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 52 37 / 180 = 0.20556 0.00446 ## JiggleSubtree 0 19 17 / 281 = 0.06050 0.00927 ## JiggleSegment 1 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 1 0 / 61 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 94 35 / 253 = 0.13834 0.00573 ## TweakPhiSegment 2 59 24 / 150 = 0.16000 0.00328 ## TweakPsiSubtree 1 69 49 / 180 = 0.27222 0.00431 ## TweakPsiSegment 0 114 81 / 261 = 0.31034 0.00553 ## TweakPsiPhiSubtree 33 107 58 / 294 = 0.19728 0.00750 ## TweakPsiPhiSegment 50 123 87 / 331 = 0.26284 0.00860 ## TweakHbondSubtree 2 77 56 / 303 = 0.18482 0.00790 ## TweakHbondSegment 1 37 30 / 186 = 0.16129 0.00560 ## TweakMultimer 59 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 17 67 54 / 149 = 0.36242 0.00285 ## OneRotamer 0 26 11 / 148 = 0.07432 0.00733 ## ClashingRotamer 0 2 0 / 51 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 88 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 286 = 0.00699 0.00127 ## CloseGap 0 8 1 / 270 = 0.00370 0.00025 ## HealGap 0 18 10 / 270 = 0.03704 0.00086 ## MoveGap 0 0 0 / 228 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 285 = 0.00351 0.00079 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 968 = 0.00103 0.00001 ## InsertFragment 0 10 3 / 280 = 0.01071 0.00413 ## TwoFragment 0 1 0 / 269 = 0.00000 0.00000 ## CrossOver 11 34 15 / 427 = 0.03513 0.01917 ## CrossAndInsert 4 3 1 / 240 = 0.00417 0.00003 ## ReduceClash 0 4 1 / 292 = 0.00342 0.00074 # generation 70: best score out of 20: T0287.try5-scwrl 189.46820 cost/residue, 184 clashes 0.16782 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 53 39 / 185 = 0.21081 0.00447 ## JiggleSubtree 0 19 17 / 288 = 0.05903 0.00905 ## JiggleSegment 1 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 43 = 0.00000 0.00000 ## OptSegment 0 1 0 / 61 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 95 36 / 257 = 0.14008 0.00564 ## TweakPhiSegment 2 59 24 / 150 = 0.16000 0.00328 ## TweakPsiSubtree 1 70 50 / 185 = 0.27027 0.00437 ## TweakPsiSegment 0 115 82 / 265 = 0.30943 0.00546 ## TweakPsiPhiSubtree 34 110 60 / 301 = 0.19934 0.00742 ## TweakPsiPhiSegment 51 127 88 / 336 = 0.26190 0.00849 ## TweakHbondSubtree 2 77 56 / 308 = 0.18182 0.00777 ## TweakHbondSegment 1 38 31 / 192 = 0.16146 0.00567 ## TweakMultimer 61 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 18 68 55 / 152 = 0.36184 0.00283 ## OneRotamer 0 27 12 / 161 = 0.07453 0.00685 ## ClashingRotamer 0 2 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 88 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 286 = 0.00699 0.00127 ## CloseGap 0 8 1 / 274 = 0.00365 0.00025 ## HealGap 0 18 10 / 271 = 0.03690 0.00086 ## MoveGap 0 0 0 / 232 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 289 = 0.00346 0.00078 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 58 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 980 = 0.00102 0.00001 ## InsertFragment 0 10 3 / 281 = 0.01068 0.00411 ## TwoFragment 0 1 0 / 272 = 0.00000 0.00000 ## CrossOver 11 34 15 / 428 = 0.03505 0.01912 ## CrossAndInsert 4 3 1 / 243 = 0.00412 0.00003 ## ReduceClash 0 4 1 / 293 = 0.00341 0.00074 # generation 71: best score out of 20: T0287.try5-scwrl 189.43210 cost/residue, 185 clashes 0.17017 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 53 39 / 192 = 0.20312 0.00430 ## JiggleSubtree 0 19 17 / 290 = 0.05862 0.00898 ## JiggleSegment 1 1 0 / 13 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 1 0 / 61 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 96 36 / 260 = 0.13846 0.00558 ## TweakPhiSegment 2 59 24 / 150 = 0.16000 0.00328 ## TweakPsiSubtree 1 71 50 / 187 = 0.26738 0.00432 ## TweakPsiSegment 0 118 84 / 271 = 0.30996 0.00534 ## TweakPsiPhiSubtree 34 111 61 / 306 = 0.19935 0.00759 ## TweakPsiPhiSegment 51 129 90 / 343 = 0.26239 0.00841 ## TweakHbondSubtree 2 79 57 / 318 = 0.17925 0.00757 ## TweakHbondSegment 1 38 31 / 200 = 0.15500 0.00545 ## TweakMultimer 62 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 19 70 55 / 157 = 0.35032 0.00274 ## OneRotamer 0 28 13 / 167 = 0.07784 0.00736 ## ClashingRotamer 0 2 0 / 52 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 88 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 290 = 0.00690 0.00125 ## CloseGap 0 8 1 / 276 = 0.00362 0.00024 ## HealGap 0 18 11 / 274 = 0.04015 0.00085 ## MoveGap 0 0 0 / 234 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 293 = 0.00341 0.00077 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 59 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 985 = 0.00102 0.00001 ## InsertFragment 0 10 3 / 285 = 0.01053 0.00405 ## TwoFragment 0 1 0 / 272 = 0.00000 0.00000 ## CrossOver 11 34 15 / 436 = 0.03440 0.01877 ## CrossAndInsert 5 3 1 / 243 = 0.00412 0.00003 ## ReduceClash 0 5 1 / 295 = 0.00339 0.00073 # Closing gap before 171 next to short segment # generation 72: best score out of 20: T0287.try5-scwrl 189.28642 cost/residue, 186 clashes 0.17180 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 54 40 / 195 = 0.20513 0.00476 ## JiggleSubtree 0 19 17 / 294 = 0.05782 0.00886 ## JiggleSegment 1 1 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 45 = 0.00000 0.00000 ## OptSegment 0 1 0 / 61 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 96 36 / 263 = 0.13688 0.00551 ## TweakPhiSegment 2 59 24 / 152 = 0.15789 0.00324 ## TweakPsiSubtree 1 73 52 / 195 = 0.26667 0.00416 ## TweakPsiSegment 0 120 85 / 275 = 0.30909 0.00526 ## TweakPsiPhiSubtree 35 112 62 / 314 = 0.19745 0.00746 ## TweakPsiPhiSegment 51 130 91 / 349 = 0.26074 0.00837 ## TweakHbondSubtree 2 81 59 / 324 = 0.18210 0.00794 ## TweakHbondSegment 1 42 32 / 208 = 0.15385 0.00527 ## TweakMultimer 63 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 20 70 56 / 158 = 0.35443 0.00273 ## OneRotamer 0 30 15 / 183 = 0.08197 0.00739 ## ClashingRotamer 0 2 0 / 53 = 0.00000 0.00000 ## ClusteredRotamer 5 5 0 / 89 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 294 = 0.00680 0.00124 ## CloseGap 0 9 1 / 278 = 0.00360 0.00024 ## HealGap 0 19 11 / 276 = 0.03986 0.00084 ## MoveGap 0 0 0 / 237 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 295 = 0.00339 0.00076 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 59 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 991 = 0.00101 0.00001 ## InsertFragment 0 10 3 / 288 = 0.01042 0.00401 ## TwoFragment 0 1 0 / 273 = 0.00000 0.00000 ## CrossOver 11 34 15 / 439 = 0.03417 0.01864 ## CrossAndInsert 5 3 1 / 244 = 0.00410 0.00003 ## ReduceClash 0 5 1 / 296 = 0.00338 0.00073 # generation 73: best score out of 20: T0287.try5-scwrl 189.16396 cost/residue, 181 clashes 0.17180 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 40 / 199 = 0.20101 0.00467 ## JiggleSubtree 0 19 17 / 299 = 0.05686 0.00871 ## JiggleSegment 1 1 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 62 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 96 36 / 265 = 0.13585 0.00547 ## TweakPhiSegment 2 60 24 / 157 = 0.15287 0.00313 ## TweakPsiSubtree 1 76 55 / 201 = 0.27363 0.00410 ## TweakPsiSegment 0 122 86 / 281 = 0.30605 0.00521 ## TweakPsiPhiSubtree 36 114 63 / 322 = 0.19565 0.00731 ## TweakPsiPhiSegment 52 131 92 / 352 = 0.26136 0.00833 ## TweakHbondSubtree 2 82 60 / 337 = 0.17804 0.00785 ## TweakHbondSegment 1 43 33 / 209 = 0.15789 0.00525 ## TweakMultimer 64 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 20 72 58 / 164 = 0.35366 0.00282 ## OneRotamer 0 32 17 / 194 = 0.08763 0.00839 ## ClashingRotamer 0 2 0 / 55 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 89 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 298 = 0.00671 0.00122 ## CloseGap 0 9 1 / 279 = 0.00358 0.00024 ## HealGap 0 19 11 / 278 = 0.03957 0.00084 ## MoveGap 0 0 0 / 239 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 296 = 0.00338 0.00076 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 996 = 0.00100 0.00001 ## InsertFragment 0 10 3 / 288 = 0.01042 0.00401 ## TwoFragment 0 1 0 / 274 = 0.00000 0.00000 ## CrossOver 11 34 15 / 442 = 0.03394 0.01852 ## CrossAndInsert 5 3 1 / 248 = 0.00403 0.00003 ## ReduceClash 0 5 1 / 298 = 0.00336 0.00072 # generation 74: best score out of 20: T0287.try5-scwrl 189.09268 cost/residue, 182 clashes 0.17180 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 58 40 / 205 = 0.19512 0.00453 ## JiggleSubtree 0 19 17 / 303 = 0.05611 0.00860 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 23 = 0.00000 0.00000 ## TweakPhiSubtree 10 97 36 / 268 = 0.13433 0.00541 ## TweakPhiSegment 2 60 24 / 157 = 0.15287 0.00313 ## TweakPsiSubtree 1 77 55 / 204 = 0.26961 0.00404 ## TweakPsiSegment 0 122 86 / 283 = 0.30389 0.00517 ## TweakPsiPhiSubtree 36 115 64 / 328 = 0.19512 0.00739 ## TweakPsiPhiSegment 52 135 93 / 360 = 0.25833 0.00817 ## TweakHbondSubtree 2 84 60 / 344 = 0.17442 0.00769 ## TweakHbondSegment 1 43 33 / 216 = 0.15278 0.00508 ## TweakMultimer 65 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 20 73 60 / 167 = 0.35928 0.00283 ## OneRotamer 0 34 18 / 210 = 0.08571 0.00793 ## ClashingRotamer 0 2 0 / 55 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 90 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 301 = 0.00664 0.00121 ## CloseGap 0 9 1 / 284 = 0.00352 0.00024 ## HealGap 0 20 11 / 282 = 0.03901 0.00082 ## MoveGap 0 0 0 / 240 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 297 = 0.00337 0.00076 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 60 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1005 = 0.00100 0.00001 ## InsertFragment 0 10 3 / 290 = 0.01034 0.00398 ## TwoFragment 0 1 0 / 277 = 0.00000 0.00000 ## CrossOver 11 34 15 / 443 = 0.03386 0.01847 ## CrossAndInsert 6 3 1 / 250 = 0.00400 0.00003 ## ReduceClash 0 5 1 / 299 = 0.00334 0.00072 # Closing gap before 189 next to short segment # Closing gap before 102 next to short segment # generation 75: best score out of 20: T0287.try5-scwrl 188.90637 cost/residue, 185 clashes 0.17180 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 59 41 / 209 = 0.19617 0.00460 ## JiggleSubtree 0 19 17 / 303 = 0.05611 0.00860 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 97 37 / 272 = 0.13603 0.00534 ## TweakPhiSegment 2 60 24 / 157 = 0.15287 0.00313 ## TweakPsiSubtree 1 80 56 / 210 = 0.26667 0.00404 ## TweakPsiSegment 0 123 86 / 287 = 0.29965 0.00510 ## TweakPsiPhiSubtree 36 115 64 / 330 = 0.19394 0.00735 ## TweakPsiPhiSegment 53 136 93 / 362 = 0.25691 0.00812 ## TweakHbondSubtree 2 87 63 / 356 = 0.17697 0.00753 ## TweakHbondSegment 1 43 33 / 222 = 0.14865 0.00495 ## TweakMultimer 66 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 20 75 61 / 169 = 0.36095 0.00296 ## OneRotamer 0 37 21 / 226 = 0.09292 0.00897 ## ClashingRotamer 0 2 0 / 56 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 91 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 302 = 0.00662 0.00120 ## CloseGap 0 9 1 / 290 = 0.00345 0.00023 ## HealGap 0 21 11 / 284 = 0.03873 0.00082 ## MoveGap 0 0 0 / 241 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 301 = 0.00332 0.00075 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1019 = 0.00098 0.00001 ## InsertFragment 0 10 3 / 292 = 0.01027 0.00396 ## TwoFragment 0 1 0 / 278 = 0.00000 0.00000 ## CrossOver 11 34 15 / 447 = 0.03356 0.01831 ## CrossAndInsert 6 3 1 / 251 = 0.00398 0.00003 ## ReduceClash 0 5 1 / 301 = 0.00332 0.00072 # generation 76: best score out of 20: T0287.try5-scwrl 188.90021 cost/residue, 184 clashes 0.17160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 59 43 / 214 = 0.20093 0.00463 ## JiggleSubtree 0 19 17 / 307 = 0.05537 0.00849 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 98 38 / 276 = 0.13768 0.00565 ## TweakPhiSegment 2 62 24 / 160 = 0.15000 0.00307 ## TweakPsiSubtree 1 84 59 / 216 = 0.27315 0.00396 ## TweakPsiSegment 0 127 89 / 295 = 0.30169 0.00498 ## TweakPsiPhiSubtree 37 117 64 / 337 = 0.18991 0.00719 ## TweakPsiPhiSegment 54 137 93 / 367 = 0.25341 0.00801 ## TweakHbondSubtree 2 87 63 / 363 = 0.17355 0.00738 ## TweakHbondSegment 1 43 33 / 229 = 0.14410 0.00480 ## TweakMultimer 68 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 75 63 / 173 = 0.36416 0.00292 ## OneRotamer 0 38 21 / 242 = 0.08678 0.00838 ## ClashingRotamer 0 2 0 / 58 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 91 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 303 = 0.00660 0.00120 ## CloseGap 0 9 1 / 290 = 0.00345 0.00023 ## HealGap 0 22 11 / 287 = 0.03833 0.00081 ## MoveGap 0 0 0 / 242 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 303 = 0.00330 0.00074 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1023 = 0.00098 0.00001 ## InsertFragment 0 10 3 / 295 = 0.01017 0.00392 ## TwoFragment 0 1 0 / 281 = 0.00000 0.00000 ## CrossOver 12 34 15 / 447 = 0.03356 0.01831 ## CrossAndInsert 6 3 1 / 253 = 0.00395 0.00003 ## ReduceClash 0 5 1 / 304 = 0.00329 0.00071 # generation 77: best score out of 20: T0287.try5-scwrl 188.85324 cost/residue, 188 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 60 45 / 222 = 0.20270 0.00460 ## JiggleSubtree 0 19 17 / 313 = 0.05431 0.00832 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 100 39 / 285 = 0.13684 0.00556 ## TweakPhiSegment 2 62 24 / 162 = 0.14815 0.00304 ## TweakPsiSubtree 1 86 61 / 221 = 0.27602 0.00388 ## TweakPsiSegment 0 128 89 / 297 = 0.29966 0.00495 ## TweakPsiPhiSubtree 40 120 65 / 344 = 0.18895 0.00720 ## TweakPsiPhiSegment 54 138 94 / 371 = 0.25337 0.00793 ## TweakHbondSubtree 2 87 63 / 369 = 0.17073 0.00726 ## TweakHbondSegment 1 43 33 / 232 = 0.14224 0.00473 ## TweakMultimer 69 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 77 63 / 177 = 0.35593 0.00286 ## OneRotamer 0 38 21 / 254 = 0.08268 0.00799 ## ClashingRotamer 0 2 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 92 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 304 = 0.00658 0.00120 ## CloseGap 0 9 1 / 294 = 0.00340 0.00023 ## HealGap 0 22 11 / 288 = 0.03819 0.00081 ## MoveGap 0 0 0 / 244 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 305 = 0.00328 0.00074 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1032 = 0.00097 0.00001 ## InsertFragment 0 10 3 / 297 = 0.01010 0.00389 ## TwoFragment 0 1 0 / 281 = 0.00000 0.00000 ## CrossOver 12 34 15 / 451 = 0.03326 0.01815 ## CrossAndInsert 6 3 1 / 257 = 0.00389 0.00003 ## ReduceClash 0 5 1 / 304 = 0.00329 0.00071 # Closing gap before 89 next to short segment # Closing gap before 192 next to short segment # generation 78: best score out of 20: T0287.try5-scwrl 188.85324 cost/residue, 188 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 62 47 / 230 = 0.20435 0.00479 ## JiggleSubtree 0 19 17 / 315 = 0.05397 0.00827 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 103 40 / 292 = 0.13699 0.00544 ## TweakPhiSegment 2 63 24 / 163 = 0.14724 0.00302 ## TweakPsiSubtree 1 87 61 / 222 = 0.27477 0.00386 ## TweakPsiSegment 0 131 92 / 304 = 0.30263 0.00484 ## TweakPsiPhiSubtree 41 121 66 / 348 = 0.18966 0.00725 ## TweakPsiPhiSegment 55 140 96 / 376 = 0.25532 0.00790 ## TweakHbondSubtree 2 88 64 / 374 = 0.17112 0.00722 ## TweakHbondSegment 1 44 34 / 236 = 0.14407 0.00471 ## TweakMultimer 71 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 78 63 / 178 = 0.35393 0.00284 ## OneRotamer 0 38 21 / 269 = 0.07807 0.00754 ## ClashingRotamer 0 2 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 92 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 307 = 0.00651 0.00118 ## CloseGap 0 9 1 / 298 = 0.00336 0.00023 ## HealGap 0 22 11 / 292 = 0.03767 0.00080 ## MoveGap 0 0 0 / 248 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 308 = 0.00325 0.00073 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 61 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1036 = 0.00097 0.00001 ## InsertFragment 0 10 3 / 301 = 0.00997 0.00384 ## TwoFragment 0 1 0 / 284 = 0.00000 0.00000 ## CrossOver 12 34 15 / 457 = 0.03282 0.01791 ## CrossAndInsert 6 3 1 / 258 = 0.00388 0.00003 ## ReduceClash 0 5 1 / 308 = 0.00325 0.00070 # Closing gap before 195 next to short segment # generation 79: best score out of 20: T0287.try5-scwrl 188.59131 cost/residue, 186 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 64 48 / 238 = 0.20168 0.00463 ## JiggleSubtree 0 19 17 / 316 = 0.05380 0.00824 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 105 42 / 296 = 0.14189 0.00546 ## TweakPhiSegment 2 63 24 / 165 = 0.14545 0.00298 ## TweakPsiSubtree 1 88 62 / 225 = 0.27556 0.00387 ## TweakPsiSegment 0 132 94 / 309 = 0.30421 0.00477 ## TweakPsiPhiSubtree 42 121 66 / 354 = 0.18644 0.00713 ## TweakPsiPhiSegment 55 141 97 / 384 = 0.25260 0.00788 ## TweakHbondSubtree 2 90 67 / 380 = 0.17632 0.00760 ## TweakHbondSegment 1 45 35 / 241 = 0.14523 0.00478 ## TweakMultimer 72 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 78 64 / 186 = 0.34409 0.00272 ## OneRotamer 0 44 27 / 283 = 0.09541 0.00841 ## ClashingRotamer 0 2 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 94 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 307 = 0.00651 0.00118 ## CloseGap 0 9 1 / 300 = 0.00333 0.00022 ## HealGap 0 22 11 / 294 = 0.03741 0.00079 ## MoveGap 0 0 0 / 249 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 308 = 0.00325 0.00073 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 62 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1043 = 0.00096 0.00001 ## InsertFragment 0 10 3 / 306 = 0.00980 0.00378 ## TwoFragment 0 1 0 / 288 = 0.00000 0.00000 ## CrossOver 12 34 15 / 458 = 0.03275 0.01787 ## CrossAndInsert 6 3 1 / 262 = 0.00382 0.00003 ## ReduceClash 0 5 1 / 309 = 0.00324 0.00070 # generation 80: best score out of 20: T0287.try5-scwrl 188.57207 cost/residue, 186 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 66 48 / 242 = 0.19835 0.00455 ## JiggleSubtree 0 19 17 / 317 = 0.05363 0.00822 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 46 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 106 42 / 301 = 0.13953 0.00537 ## TweakPhiSegment 2 63 24 / 166 = 0.14458 0.00296 ## TweakPsiSubtree 1 91 63 / 229 = 0.27511 0.00380 ## TweakPsiSegment 0 132 95 / 311 = 0.30547 0.00475 ## TweakPsiPhiSubtree 42 122 67 / 361 = 0.18560 0.00704 ## TweakPsiPhiSegment 57 142 98 / 393 = 0.24936 0.00771 ## TweakHbondSubtree 2 91 67 / 390 = 0.17179 0.00740 ## TweakHbondSegment 1 46 35 / 244 = 0.14344 0.00472 ## TweakMultimer 76 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 21 80 68 / 192 = 0.35417 0.00283 ## OneRotamer 0 50 31 / 300 = 0.10333 0.00829 ## ClashingRotamer 0 2 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 95 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 307 = 0.00651 0.00118 ## CloseGap 0 9 1 / 302 = 0.00331 0.00022 ## HealGap 0 22 11 / 296 = 0.03716 0.00079 ## MoveGap 0 0 0 / 250 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 311 = 0.00322 0.00072 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 63 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1052 = 0.00095 0.00001 ## InsertFragment 0 10 3 / 310 = 0.00968 0.00373 ## TwoFragment 0 1 0 / 290 = 0.00000 0.00000 ## CrossOver 12 34 15 / 459 = 0.03268 0.01783 ## CrossAndInsert 6 3 1 / 263 = 0.00380 0.00003 ## ReduceClash 0 5 1 / 313 = 0.00319 0.00069 # Closing gap before 192 next to short segment # Closing gap before 107 next to short segment # generation 81: best score out of 20: T0287.try5-scwrl 188.37059 cost/residue, 188 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 66 48 / 246 = 0.19512 0.00448 ## JiggleSubtree 0 19 17 / 321 = 0.05296 0.00812 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 47 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 108 42 / 307 = 0.13681 0.00526 ## TweakPhiSegment 2 63 24 / 167 = 0.14371 0.00295 ## TweakPsiSubtree 1 92 66 / 235 = 0.28085 0.00383 ## TweakPsiSegment 0 134 97 / 315 = 0.30794 0.00471 ## TweakPsiPhiSubtree 43 124 69 / 370 = 0.18649 0.00701 ## TweakPsiPhiSegment 59 142 98 / 399 = 0.24561 0.00759 ## TweakHbondSubtree 2 93 68 / 397 = 0.17128 0.00730 ## TweakHbondSegment 1 46 35 / 246 = 0.14228 0.00469 ## TweakMultimer 76 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 83 70 / 196 = 0.35714 0.00280 ## OneRotamer 0 51 32 / 318 = 0.10063 0.00851 ## ClashingRotamer 0 2 0 / 60 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 309 = 0.00647 0.00118 ## CloseGap 0 9 1 / 304 = 0.00329 0.00022 ## HealGap 0 22 11 / 298 = 0.03691 0.00078 ## MoveGap 0 0 0 / 253 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 314 = 0.00318 0.00072 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 63 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1061 = 0.00094 0.00001 ## InsertFragment 0 10 3 / 311 = 0.00965 0.00371 ## TwoFragment 0 1 0 / 293 = 0.00000 0.00000 ## CrossOver 12 34 15 / 459 = 0.03268 0.01783 ## CrossAndInsert 6 3 1 / 264 = 0.00379 0.00003 ## ReduceClash 0 5 1 / 314 = 0.00318 0.00069 # Closing gap before 149 # Closing gap before 14 without wiggling. # generation 82: best score out of 20: T0287.try5-scwrl 188.34410 cost/residue, 188 clashes 0.17264 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 69 49 / 254 = 0.19291 0.00439 ## JiggleSubtree 0 19 17 / 325 = 0.05231 0.00802 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 48 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 110 44 / 312 = 0.14103 0.00525 ## TweakPhiSegment 2 63 24 / 168 = 0.14286 0.00293 ## TweakPsiSubtree 1 93 67 / 238 = 0.28151 0.00386 ## TweakPsiSegment 0 134 97 / 318 = 0.30503 0.00466 ## TweakPsiPhiSubtree 44 126 70 / 373 = 0.18767 0.00700 ## TweakPsiPhiSegment 59 146 100 / 406 = 0.24631 0.00763 ## TweakHbondSubtree 2 96 69 / 407 = 0.16953 0.00723 ## TweakHbondSegment 1 47 36 / 253 = 0.14229 0.00487 ## TweakMultimer 79 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 84 72 / 199 = 0.36181 0.00280 ## OneRotamer 0 51 32 / 333 = 0.09610 0.00813 ## ClashingRotamer 0 2 0 / 61 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 309 = 0.00647 0.00118 ## CloseGap 0 10 1 / 306 = 0.00327 0.00022 ## HealGap 0 22 11 / 300 = 0.03667 0.00078 ## MoveGap 0 0 0 / 257 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 316 = 0.00316 0.00071 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 63 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1066 = 0.00094 0.00001 ## InsertFragment 0 10 3 / 314 = 0.00955 0.00368 ## TwoFragment 0 1 0 / 294 = 0.00000 0.00000 ## CrossOver 12 34 15 / 460 = 0.03261 0.01779 ## CrossAndInsert 6 3 1 / 270 = 0.00370 0.00003 ## ReduceClash 0 5 1 / 317 = 0.00315 0.00068 # Closing gap before 89 next to short segment # Closing gap before 192 next to short segment # generation 83: best score out of 20: T0287.try5-scwrl 188.25951 cost/residue, 183 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 70 50 / 258 = 0.19380 0.00435 ## JiggleSubtree 0 19 17 / 327 = 0.05199 0.00797 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 63 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 22 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 10 110 44 / 317 = 0.13880 0.00516 ## TweakPhiSegment 2 63 24 / 168 = 0.14286 0.00293 ## TweakPsiSubtree 1 93 67 / 242 = 0.27686 0.00379 ## TweakPsiSegment 0 137 98 / 323 = 0.30341 0.00459 ## TweakPsiPhiSubtree 45 126 70 / 379 = 0.18470 0.00689 ## TweakPsiPhiSegment 60 147 100 / 414 = 0.24155 0.00748 ## TweakHbondSubtree 2 96 69 / 413 = 0.16707 0.00712 ## TweakHbondSegment 1 48 36 / 259 = 0.13900 0.00475 ## TweakMultimer 79 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 87 75 / 205 = 0.36585 0.00290 ## OneRotamer 0 56 34 / 352 = 0.09659 0.00819 ## ClashingRotamer 0 2 0 / 61 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 312 = 0.00641 0.00117 ## CloseGap 0 10 1 / 308 = 0.00325 0.00022 ## HealGap 0 22 11 / 300 = 0.03667 0.00078 ## MoveGap 0 0 0 / 258 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 320 = 0.00313 0.00070 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 63 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1069 = 0.00094 0.00001 ## InsertFragment 0 10 3 / 319 = 0.00940 0.00362 ## TwoFragment 0 1 0 / 297 = 0.00000 0.00000 ## CrossOver 12 34 15 / 463 = 0.03240 0.01768 ## CrossAndInsert 6 3 1 / 272 = 0.00368 0.00003 ## ReduceClash 0 5 1 / 318 = 0.00314 0.00068 # generation 84: best score out of 20: T0287.try5-scwrl 188.23073 cost/residue, 185 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 70 52 / 263 = 0.19772 0.00430 ## JiggleSubtree 0 19 17 / 328 = 0.05183 0.00794 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 65 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 22 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 11 110 44 / 319 = 0.13793 0.00513 ## TweakPhiSegment 2 63 24 / 168 = 0.14286 0.00293 ## TweakPsiSubtree 1 95 69 / 251 = 0.27490 0.00374 ## TweakPsiSegment 0 138 98 / 327 = 0.29969 0.00454 ## TweakPsiPhiSubtree 45 132 72 / 392 = 0.18367 0.00679 ## TweakPsiPhiSegment 61 149 102 / 424 = 0.24057 0.00738 ## TweakHbondSubtree 2 98 69 / 421 = 0.16390 0.00699 ## TweakHbondSegment 1 48 37 / 261 = 0.14176 0.00481 ## TweakMultimer 81 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 22 88 75 / 207 = 0.36232 0.00287 ## OneRotamer 0 60 37 / 371 = 0.09973 0.00805 ## ClashingRotamer 0 2 0 / 62 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 315 = 0.00635 0.00115 ## CloseGap 0 10 1 / 309 = 0.00324 0.00022 ## HealGap 0 22 11 / 301 = 0.03654 0.00077 ## MoveGap 0 0 0 / 258 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 321 = 0.00312 0.00070 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 64 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1076 = 0.00093 0.00001 ## InsertFragment 0 10 3 / 321 = 0.00935 0.00360 ## TwoFragment 0 1 0 / 297 = 0.00000 0.00000 ## CrossOver 12 34 15 / 464 = 0.03233 0.01764 ## CrossAndInsert 6 3 1 / 273 = 0.00366 0.00003 ## ReduceClash 0 5 1 / 321 = 0.00312 0.00067 # generation 85: best score out of 20: T0287.try5-scwrl 188.20526 cost/residue, 183 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 70 52 / 269 = 0.19331 0.00421 ## JiggleSubtree 0 19 17 / 330 = 0.05152 0.00789 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 65 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 12 113 46 / 328 = 0.14024 0.00499 ## TweakPhiSegment 2 65 24 / 171 = 0.14035 0.00288 ## TweakPsiSubtree 1 97 70 / 256 = 0.27344 0.00369 ## TweakPsiSegment 0 139 99 / 329 = 0.30091 0.00452 ## TweakPsiPhiSubtree 46 132 72 / 397 = 0.18136 0.00670 ## TweakPsiPhiSegment 64 150 103 / 430 = 0.23953 0.00729 ## TweakHbondSubtree 2 99 71 / 427 = 0.16628 0.00694 ## TweakHbondSegment 1 50 38 / 268 = 0.14179 0.00481 ## TweakMultimer 81 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 90 77 / 212 = 0.36321 0.00284 ## OneRotamer 0 62 38 / 391 = 0.09719 0.00778 ## ClashingRotamer 0 2 0 / 62 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 96 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 315 = 0.00635 0.00115 ## CloseGap 0 10 1 / 310 = 0.00323 0.00022 ## HealGap 0 22 11 / 302 = 0.03642 0.00077 ## MoveGap 0 0 0 / 262 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 322 = 0.00311 0.00070 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 65 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1085 = 0.00092 0.00001 ## InsertFragment 0 10 3 / 323 = 0.00929 0.00358 ## TwoFragment 0 1 0 / 297 = 0.00000 0.00000 ## CrossOver 12 34 15 / 465 = 0.03226 0.01760 ## CrossAndInsert 6 3 1 / 274 = 0.00365 0.00003 ## ReduceClash 0 5 1 / 322 = 0.00311 0.00067 # generation 86: best score out of 20: T0287.try5-scwrl 188.20526 cost/residue, 183 clashes 0.17273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 70 53 / 276 = 0.19203 0.00410 ## JiggleSubtree 0 19 17 / 331 = 0.05136 0.00787 ## JiggleSegment 1 1 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 66 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 12 115 46 / 331 = 0.13897 0.00495 ## TweakPhiSegment 2 67 24 / 175 = 0.13714 0.00281 ## TweakPsiSubtree 1 97 70 / 262 = 0.26718 0.00361 ## TweakPsiSegment 0 141 100 / 331 = 0.30211 0.00450 ## TweakPsiPhiSubtree 46 133 72 / 404 = 0.17822 0.00659 ## TweakPsiPhiSegment 64 152 105 / 437 = 0.24027 0.00728 ## TweakHbondSubtree 2 102 71 / 438 = 0.16210 0.00677 ## TweakHbondSegment 1 52 39 / 280 = 0.13929 0.00461 ## TweakMultimer 82 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 23 90 77 / 216 = 0.35648 0.00279 ## OneRotamer 0 62 38 / 404 = 0.09406 0.00753 ## ClashingRotamer 0 2 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 98 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 317 = 0.00631 0.00115 ## CloseGap 0 10 1 / 311 = 0.00322 0.00022 ## HealGap 0 22 11 / 304 = 0.03618 0.00077 ## MoveGap 0 0 0 / 263 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 322 = 0.00311 0.00070 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 65 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1090 = 0.00092 0.00001 ## InsertFragment 0 10 3 / 326 = 0.00920 0.00354 ## TwoFragment 0 1 0 / 298 = 0.00000 0.00000 ## CrossOver 12 34 15 / 466 = 0.03219 0.01756 ## CrossAndInsert 6 3 1 / 276 = 0.00362 0.00002 ## ReduceClash 0 5 1 / 323 = 0.00310 0.00067 # generation 87: best score out of 20: T0287.try5-scwrl 188.14467 cost/residue, 180 clashes 0.17251 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 72 55 / 287 = 0.19164 0.00397 ## JiggleSubtree 0 19 17 / 337 = 0.05045 0.00773 ## JiggleSegment 1 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 12 116 46 / 334 = 0.13772 0.00490 ## TweakPhiSegment 2 67 24 / 177 = 0.13559 0.00278 ## TweakPsiSubtree 1 99 71 / 268 = 0.26493 0.00356 ## TweakPsiSegment 0 141 100 / 333 = 0.30030 0.00447 ## TweakPsiPhiSubtree 47 134 74 / 413 = 0.17918 0.00649 ## TweakPsiPhiSegment 66 152 105 / 441 = 0.23810 0.00721 ## TweakHbondSubtree 2 103 71 / 447 = 0.15884 0.00663 ## TweakHbondSegment 1 54 41 / 290 = 0.14138 0.00456 ## TweakMultimer 82 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 24 92 78 / 220 = 0.35455 0.00276 ## OneRotamer 0 65 40 / 418 = 0.09569 0.00745 ## ClashingRotamer 0 2 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 6 5 0 / 98 = 0.00000 0.00000 ## ReduceBreak 0 7 2 / 320 = 0.00625 0.00114 ## CloseGap 0 10 1 / 313 = 0.00319 0.00022 ## HealGap 0 22 11 / 306 = 0.03595 0.00076 ## MoveGap 0 0 0 / 263 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 323 = 0.00310 0.00070 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 65 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1096 = 0.00091 0.00001 ## InsertFragment 0 10 3 / 328 = 0.00915 0.00352 ## TwoFragment 0 1 0 / 299 = 0.00000 0.00000 ## CrossOver 12 34 15 / 466 = 0.03219 0.01756 ## CrossAndInsert 6 3 1 / 276 = 0.00362 0.00002 ## ReduceClash 0 5 1 / 323 = 0.00310 0.00067 # generation 88: best score out of 20: T0287.try5-scwrl 188.07315 cost/residue, 183 clashes 0.17383 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 72 55 / 288 = 0.19097 0.00396 ## JiggleSubtree 0 20 18 / 342 = 0.05263 0.00770 ## JiggleSegment 1 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 13 117 46 / 340 = 0.13529 0.00482 ## TweakPhiSegment 2 67 24 / 178 = 0.13483 0.00276 ## TweakPsiSubtree 1 101 71 / 274 = 0.25912 0.00349 ## TweakPsiSegment 0 141 100 / 333 = 0.30030 0.00447 ## TweakPsiPhiSubtree 49 135 75 / 416 = 0.18029 0.00658 ## TweakPsiPhiSegment 66 152 105 / 446 = 0.23543 0.00713 ## TweakHbondSubtree 2 105 72 / 454 = 0.15859 0.00663 ## TweakHbondSegment 1 56 42 / 302 = 0.13907 0.00441 ## TweakMultimer 85 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 24 94 80 / 224 = 0.35714 0.00276 ## OneRotamer 0 68 43 / 435 = 0.09885 0.00731 ## ClashingRotamer 0 2 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 100 = 0.00000 0.00000 ## ReduceBreak 0 8 3 / 322 = 0.00932 0.00148 ## CloseGap 0 10 1 / 314 = 0.00318 0.00021 ## HealGap 0 22 11 / 308 = 0.03571 0.00076 ## MoveGap 0 0 0 / 265 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 324 = 0.00309 0.00069 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 65 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1105 = 0.00090 0.00001 ## InsertFragment 0 10 3 / 329 = 0.00912 0.00351 ## TwoFragment 0 1 0 / 305 = 0.00000 0.00000 ## CrossOver 12 34 15 / 468 = 0.03205 0.01749 ## CrossAndInsert 6 3 1 / 280 = 0.00357 0.00002 ## ReduceClash 0 5 1 / 324 = 0.00309 0.00067 # generation 89: best score out of 20: T0287.try5-scwrl 188.01009 cost/residue, 178 clashes 0.17222 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 72 55 / 289 = 0.19031 0.00395 ## JiggleSubtree 0 20 18 / 345 = 0.05217 0.00763 ## JiggleSegment 1 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 68 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 24 = 0.00000 0.00000 ## TweakPhiSubtree 13 117 46 / 341 = 0.13490 0.00480 ## TweakPhiSegment 2 67 24 / 179 = 0.13408 0.00275 ## TweakPsiSubtree 1 104 73 / 278 = 0.26259 0.00357 ## TweakPsiSegment 0 142 101 / 337 = 0.29970 0.00445 ## TweakPsiPhiSubtree 51 139 77 / 427 = 0.18033 0.00662 ## TweakPsiPhiSegment 66 153 106 / 450 = 0.23556 0.00710 ## TweakHbondSubtree 2 107 73 / 464 = 0.15733 0.00662 ## TweakHbondSegment 1 56 42 / 306 = 0.13725 0.00436 ## TweakMultimer 86 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 24 96 82 / 231 = 0.35498 0.00283 ## OneRotamer 0 69 44 / 445 = 0.09888 0.00723 ## ClashingRotamer 0 2 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 100 = 0.00000 0.00000 ## ReduceBreak 0 8 3 / 333 = 0.00901 0.00143 ## CloseGap 0 10 1 / 314 = 0.00318 0.00021 ## HealGap 0 22 11 / 309 = 0.03560 0.00075 ## MoveGap 0 0 0 / 267 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 326 = 0.00307 0.00069 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 65 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1121 = 0.00089 0.00001 ## InsertFragment 0 10 3 / 330 = 0.00909 0.00350 ## TwoFragment 0 1 0 / 307 = 0.00000 0.00000 ## CrossOver 12 34 15 / 468 = 0.03205 0.01749 ## CrossAndInsert 6 3 1 / 281 = 0.00356 0.00002 ## ReduceClash 0 5 1 / 326 = 0.00307 0.00066 # Closing gap before 107 next to short segment # generation 90: best score out of 20: T0287.try5-scwrl 187.92249 cost/residue, 179 clashes 0.17222 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 74 56 / 296 = 0.18919 0.00385 ## JiggleSubtree 0 20 18 / 347 = 0.05187 0.00759 ## JiggleSegment 1 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 69 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 25 = 0.00000 0.00000 ## TweakPhiSubtree 13 120 47 / 344 = 0.13663 0.00478 ## TweakPhiSegment 2 67 24 / 179 = 0.13408 0.00275 ## TweakPsiSubtree 1 105 75 / 285 = 0.26316 0.00353 ## TweakPsiSegment 0 142 101 / 340 = 0.29706 0.00441 ## TweakPsiPhiSubtree 55 140 77 / 434 = 0.17742 0.00651 ## TweakPsiPhiSegment 69 155 107 / 455 = 0.23516 0.00709 ## TweakHbondSubtree 2 107 74 / 470 = 0.15745 0.00654 ## TweakHbondSegment 2 56 43 / 309 = 0.13916 0.00436 ## TweakMultimer 87 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 25 99 84 / 238 = 0.35294 0.00276 ## OneRotamer 0 71 46 / 461 = 0.09978 0.00718 ## ClashingRotamer 0 2 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 101 = 0.00000 0.00000 ## ReduceBreak 0 8 3 / 339 = 0.00885 0.00141 ## CloseGap 0 10 1 / 318 = 0.00314 0.00021 ## HealGap 0 22 11 / 309 = 0.03560 0.00075 ## MoveGap 0 0 0 / 268 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 327 = 0.00306 0.00069 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 66 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1128 = 0.00089 0.00001 ## InsertFragment 0 10 3 / 332 = 0.00904 0.00348 ## TwoFragment 0 1 0 / 310 = 0.00000 0.00000 ## CrossOver 12 34 15 / 471 = 0.03185 0.01738 ## CrossAndInsert 6 3 1 / 283 = 0.00353 0.00002 ## ReduceClash 0 5 1 / 327 = 0.00306 0.00066 # generation 91: best score out of 20: T0287.try5-scwrl 187.86078 cost/residue, 181 clashes 0.17383 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 74 56 / 301 = 0.18605 0.00379 ## JiggleSubtree 0 20 18 / 349 = 0.05158 0.00755 ## JiggleSegment 1 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 69 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 26 = 0.00000 0.00000 ## TweakPhiSubtree 13 123 49 / 349 = 0.14040 0.00471 ## TweakPhiSegment 3 67 24 / 179 = 0.13408 0.00275 ## TweakPsiSubtree 1 107 77 / 292 = 0.26370 0.00346 ## TweakPsiSegment 0 143 101 / 343 = 0.29446 0.00437 ## TweakPsiPhiSubtree 55 140 77 / 439 = 0.17540 0.00644 ## TweakPsiPhiSegment 69 157 107 / 461 = 0.23210 0.00700 ## TweakHbondSubtree 2 108 75 / 481 = 0.15593 0.00668 ## TweakHbondSegment 2 59 44 / 313 = 0.14058 0.00468 ## TweakMultimer 89 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 25 102 87 / 244 = 0.35656 0.00289 ## OneRotamer 0 72 48 / 469 = 0.10235 0.00757 ## ClashingRotamer 0 2 0 / 63 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 102 = 0.00000 0.00000 ## ReduceBreak 0 8 3 / 346 = 0.00867 0.00138 ## CloseGap 0 10 1 / 320 = 0.00313 0.00021 ## HealGap 0 22 11 / 311 = 0.03537 0.00075 ## MoveGap 0 0 0 / 271 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 331 = 0.00302 0.00068 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 66 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1133 = 0.00088 0.00001 ## InsertFragment 0 10 3 / 337 = 0.00890 0.00343 ## TwoFragment 0 1 0 / 311 = 0.00000 0.00000 ## CrossOver 12 34 15 / 474 = 0.03165 0.01727 ## CrossAndInsert 6 3 1 / 285 = 0.00351 0.00002 ## ReduceClash 0 5 1 / 329 = 0.00304 0.00066 # generation 92: best score out of 20: T0287.try5-scwrl 187.86078 cost/residue, 181 clashes 0.17383 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 75 57 / 304 = 0.18750 0.00378 ## JiggleSubtree 0 20 18 / 352 = 0.05114 0.00748 ## JiggleSegment 1 1 0 / 16 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 71 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 26 = 0.00000 0.00000 ## TweakPhiSubtree 13 123 49 / 355 = 0.13803 0.00463 ## TweakPhiSegment 3 68 24 / 180 = 0.13333 0.00273 ## TweakPsiSubtree 1 108 78 / 299 = 0.26087 0.00340 ## TweakPsiSegment 0 145 101 / 345 = 0.29275 0.00434 ## TweakPsiPhiSubtree 55 141 77 / 443 = 0.17381 0.00638 ## TweakPsiPhiSegment 71 158 107 / 466 = 0.22961 0.00692 ## TweakHbondSubtree 2 109 75 / 486 = 0.15432 0.00661 ## TweakHbondSegment 2 63 44 / 322 = 0.13665 0.00455 ## TweakMultimer 92 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 27 104 88 / 251 = 0.35060 0.00282 ## OneRotamer 0 72 48 / 478 = 0.10042 0.00743 ## ClashingRotamer 0 2 0 / 65 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 104 = 0.00000 0.00000 ## ReduceBreak 0 8 3 / 353 = 0.00850 0.00135 ## CloseGap 0 10 1 / 321 = 0.00312 0.00021 ## HealGap 0 22 11 / 311 = 0.03537 0.00075 ## MoveGap 0 0 0 / 275 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 337 = 0.00297 0.00067 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 67 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1137 = 0.00088 0.00001 ## InsertFragment 0 10 3 / 340 = 0.00882 0.00340 ## TwoFragment 0 1 0 / 313 = 0.00000 0.00000 ## CrossOver 12 34 15 / 475 = 0.03158 0.01723 ## CrossAndInsert 6 3 1 / 286 = 0.00350 0.00002 ## ReduceClash 0 5 1 / 332 = 0.00301 0.00065 # Closing gap before 149 # generation 93: best score out of 20: T0287.try5-scwrl 187.71582 cost/residue, 176 clashes 0.17383 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 77 58 / 309 = 0.18770 0.00372 ## JiggleSubtree 0 21 18 / 357 = 0.05042 0.00738 ## JiggleSegment 1 1 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 72 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 26 = 0.00000 0.00000 ## TweakPhiSubtree 13 123 49 / 358 = 0.13687 0.00460 ## TweakPhiSegment 3 68 24 / 180 = 0.13333 0.00273 ## TweakPsiSubtree 1 109 80 / 306 = 0.26144 0.00346 ## TweakPsiSegment 0 145 102 / 351 = 0.29060 0.00427 ## TweakPsiPhiSubtree 56 141 78 / 449 = 0.17372 0.00633 ## TweakPsiPhiSegment 72 158 107 / 471 = 0.22718 0.00685 ## TweakHbondSubtree 2 112 75 / 490 = 0.15306 0.00656 ## TweakHbondSegment 2 67 48 / 333 = 0.14414 0.00486 ## TweakMultimer 96 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 28 106 90 / 259 = 0.34749 0.00281 ## OneRotamer 0 75 51 / 489 = 0.10429 0.00780 ## ClashingRotamer 0 2 0 / 65 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 106 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 356 = 0.00843 0.00134 ## CloseGap 0 10 1 / 324 = 0.00309 0.00021 ## HealGap 0 22 11 / 313 = 0.03514 0.00074 ## MoveGap 0 0 0 / 276 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 339 = 0.00295 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 67 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1144 = 0.00087 0.00001 ## InsertFragment 0 10 3 / 342 = 0.00877 0.00338 ## TwoFragment 0 1 0 / 314 = 0.00000 0.00000 ## CrossOver 12 34 15 / 475 = 0.03158 0.01723 ## CrossAndInsert 6 3 1 / 289 = 0.00346 0.00002 ## ReduceClash 0 5 1 / 333 = 0.00300 0.00065 # generation 94: best score out of 20: T0287.try5-scwrl 187.68587 cost/residue, 176 clashes 0.17383 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 79 59 / 316 = 0.18671 0.00374 ## JiggleSubtree 0 21 18 / 363 = 0.04959 0.00725 ## JiggleSegment 1 1 0 / 17 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 49 = 0.00000 0.00000 ## OptSegment 0 1 0 / 72 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 13 124 49 / 360 = 0.13611 0.00457 ## TweakPhiSegment 3 69 25 / 181 = 0.13812 0.00295 ## TweakPsiSubtree 1 111 81 / 311 = 0.26045 0.00378 ## TweakPsiSegment 0 145 102 / 352 = 0.28977 0.00426 ## TweakPsiPhiSubtree 56 142 80 / 453 = 0.17660 0.00640 ## TweakPsiPhiSegment 72 159 107 / 474 = 0.22574 0.00680 ## TweakHbondSubtree 2 114 76 / 497 = 0.15292 0.00659 ## TweakHbondSegment 2 68 49 / 343 = 0.14286 0.00477 ## TweakMultimer 97 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 29 111 95 / 268 = 0.35448 0.00281 ## OneRotamer 0 76 52 / 502 = 0.10359 0.00777 ## ClashingRotamer 0 2 0 / 65 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 106 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 363 = 0.00826 0.00131 ## CloseGap 0 10 1 / 325 = 0.00308 0.00021 ## HealGap 0 22 11 / 315 = 0.03492 0.00074 ## MoveGap 0 0 0 / 278 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 341 = 0.00293 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 68 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1148 = 0.00087 0.00001 ## InsertFragment 0 10 3 / 345 = 0.00870 0.00335 ## TwoFragment 0 1 0 / 317 = 0.00000 0.00000 ## CrossOver 12 34 15 / 478 = 0.03138 0.01712 ## CrossAndInsert 6 3 1 / 291 = 0.00344 0.00002 ## ReduceClash 0 5 1 / 334 = 0.00299 0.00065 # Closing gap before 88 next to short segment # generation 95: best score out of 20: T0287.try5-scwrl 187.61189 cost/residue, 177 clashes 0.17453 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 79 59 / 318 = 0.18553 0.00371 ## JiggleSubtree 0 21 18 / 365 = 0.04932 0.00721 ## JiggleSegment 1 1 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 50 = 0.00000 0.00000 ## OptSegment 0 1 0 / 72 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 13 126 49 / 363 = 0.13499 0.00453 ## TweakPhiSegment 3 72 26 / 187 = 0.13904 0.00286 ## TweakPsiSubtree 1 112 83 / 321 = 0.25857 0.00367 ## TweakPsiSegment 0 145 102 / 354 = 0.28814 0.00423 ## TweakPsiPhiSubtree 56 145 83 / 461 = 0.18004 0.00642 ## TweakPsiPhiSegment 72 159 107 / 477 = 0.22432 0.00676 ## TweakHbondSubtree 2 114 76 / 499 = 0.15230 0.00657 ## TweakHbondSegment 2 69 51 / 354 = 0.14407 0.00477 ## TweakMultimer 98 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 29 112 96 / 272 = 0.35294 0.00277 ## OneRotamer 0 79 55 / 519 = 0.10597 0.00791 ## ClashingRotamer 0 2 0 / 65 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 106 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 369 = 0.00813 0.00129 ## CloseGap 0 10 1 / 326 = 0.00307 0.00021 ## HealGap 0 24 13 / 317 = 0.04101 0.00075 ## MoveGap 0 0 0 / 280 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 342 = 0.00292 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 69 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1157 = 0.00086 0.00001 ## InsertFragment 0 10 3 / 347 = 0.00865 0.00333 ## TwoFragment 0 1 0 / 317 = 0.00000 0.00000 ## CrossOver 12 34 15 / 479 = 0.03132 0.01709 ## CrossAndInsert 6 3 1 / 293 = 0.00341 0.00002 ## ReduceClash 0 5 1 / 335 = 0.00299 0.00064 # generation 96: best score out of 20: T0287.try5-scwrl 187.61189 cost/residue, 177 clashes 0.17453 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 81 61 / 325 = 0.18769 0.00379 ## JiggleSubtree 0 21 18 / 365 = 0.04932 0.00721 ## JiggleSegment 1 1 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 51 = 0.00000 0.00000 ## OptSegment 0 1 0 / 73 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 13 127 49 / 364 = 0.13462 0.00452 ## TweakPhiSegment 3 72 26 / 189 = 0.13757 0.00283 ## TweakPsiSubtree 1 115 86 / 330 = 0.26061 0.00367 ## TweakPsiSegment 0 145 102 / 354 = 0.28814 0.00423 ## TweakPsiPhiSubtree 57 145 83 / 465 = 0.17849 0.00636 ## TweakPsiPhiSegment 72 161 107 / 481 = 0.22245 0.00671 ## TweakHbondSubtree 2 119 80 / 512 = 0.15625 0.00655 ## TweakHbondSegment 2 70 51 / 366 = 0.13934 0.00462 ## TweakMultimer 99 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 31 114 97 / 276 = 0.35145 0.00275 ## OneRotamer 0 79 55 / 534 = 0.10300 0.00769 ## ClashingRotamer 0 2 0 / 65 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 106 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 371 = 0.00809 0.00129 ## CloseGap 0 10 1 / 327 = 0.00306 0.00021 ## HealGap 0 24 13 / 320 = 0.04063 0.00074 ## MoveGap 0 0 0 / 285 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 343 = 0.00292 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 69 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1164 = 0.00086 0.00001 ## InsertFragment 0 10 3 / 347 = 0.00865 0.00333 ## TwoFragment 0 1 0 / 318 = 0.00000 0.00000 ## CrossOver 12 34 15 / 479 = 0.03132 0.01709 ## CrossAndInsert 7 3 1 / 298 = 0.00336 0.00002 ## ReduceClash 0 5 1 / 336 = 0.00298 0.00064 # generation 97: best score out of 20: T0287.try5-scwrl 187.54492 cost/residue, 176 clashes 0.17476 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 83 63 / 331 = 0.19033 0.00374 ## JiggleSubtree 0 21 18 / 367 = 0.04905 0.00718 ## JiggleSegment 1 1 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 51 = 0.00000 0.00000 ## OptSegment 0 1 0 / 73 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 13 128 50 / 367 = 0.13624 0.00468 ## TweakPhiSegment 3 75 26 / 193 = 0.13472 0.00277 ## TweakPsiSubtree 1 117 88 / 337 = 0.26113 0.00372 ## TweakPsiSegment 0 146 104 / 357 = 0.29132 0.00422 ## TweakPsiPhiSubtree 57 147 84 / 475 = 0.17684 0.00623 ## TweakPsiPhiSegment 72 162 108 / 484 = 0.22314 0.00669 ## TweakHbondSubtree 2 120 80 / 517 = 0.15474 0.00648 ## TweakHbondSegment 2 70 51 / 372 = 0.13710 0.00454 ## TweakMultimer 103 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 31 116 100 / 280 = 0.35714 0.00273 ## OneRotamer 0 79 55 / 549 = 0.10018 0.00748 ## ClashingRotamer 0 2 0 / 66 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 107 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 377 = 0.00796 0.00127 ## CloseGap 0 10 1 / 327 = 0.00306 0.00021 ## HealGap 0 24 13 / 323 = 0.04025 0.00073 ## MoveGap 0 0 0 / 286 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 343 = 0.00292 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 70 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1175 = 0.00085 0.00001 ## InsertFragment 0 10 3 / 349 = 0.00860 0.00331 ## TwoFragment 0 1 0 / 318 = 0.00000 0.00000 ## CrossOver 12 34 15 / 480 = 0.03125 0.01705 ## CrossAndInsert 8 3 1 / 302 = 0.00331 0.00002 ## ReduceClash 0 5 1 / 337 = 0.00297 0.00064 # Closing gap before 74 next to short segment # Closing gap before 74 next to short segment # generation 98: best score out of 20: T0287.try5-scwrl 187.44794 cost/residue, 173 clashes 0.17453 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 83 63 / 334 = 0.18862 0.00371 ## JiggleSubtree 0 21 18 / 367 = 0.04905 0.00718 ## JiggleSegment 1 1 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 52 = 0.00000 0.00000 ## OptSegment 0 1 0 / 74 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 18 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 13 129 50 / 372 = 0.13441 0.00461 ## TweakPhiSegment 3 76 27 / 197 = 0.13706 0.00271 ## TweakPsiSubtree 1 119 89 / 342 = 0.26023 0.00381 ## TweakPsiSegment 0 147 105 / 359 = 0.29248 0.00420 ## TweakPsiPhiSubtree 58 148 85 / 486 = 0.17490 0.00610 ## TweakPsiPhiSegment 73 163 109 / 493 = 0.22110 0.00658 ## TweakHbondSubtree 2 122 82 / 522 = 0.15709 0.00647 ## TweakHbondSegment 3 71 52 / 378 = 0.13757 0.00457 ## TweakMultimer 104 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 32 116 100 / 281 = 0.35587 0.00272 ## OneRotamer 0 82 57 / 561 = 0.10160 0.00762 ## ClashingRotamer 0 2 0 / 67 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 108 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 380 = 0.00789 0.00126 ## CloseGap 0 10 1 / 331 = 0.00302 0.00020 ## HealGap 0 24 13 / 326 = 0.03988 0.00072 ## MoveGap 0 0 0 / 287 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 343 = 0.00292 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 70 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1187 = 0.00084 0.00001 ## InsertFragment 0 10 3 / 352 = 0.00852 0.00328 ## TwoFragment 0 1 0 / 323 = 0.00000 0.00000 ## CrossOver 12 34 15 / 480 = 0.03125 0.01705 ## CrossAndInsert 8 3 1 / 302 = 0.00331 0.00002 ## ReduceClash 0 5 1 / 339 = 0.00295 0.00064 # Closing gap before 74 next to short segment # Closing gap before 74 next to short segment # Closing gap before 171 next to short segment # generation 99: best score out of 20: T0287.try5-scwrl 187.43271 cost/residue, 173 clashes 0.17453 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 84 64 / 340 = 0.18824 0.00367 ## JiggleSubtree 0 21 18 / 367 = 0.04905 0.00718 ## JiggleSegment 1 1 0 / 18 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 53 = 0.00000 0.00000 ## OptSegment 0 1 0 / 76 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 14 129 50 / 375 = 0.13333 0.00458 ## TweakPhiSegment 3 76 27 / 199 = 0.13568 0.00269 ## TweakPsiSubtree 1 122 91 / 351 = 0.25926 0.00375 ## TweakPsiSegment 0 147 106 / 360 = 0.29444 0.00422 ## TweakPsiPhiSubtree 63 151 87 / 491 = 0.17719 0.00607 ## TweakPsiPhiSegment 75 163 109 / 494 = 0.22065 0.00657 ## TweakHbondSubtree 2 123 82 / 530 = 0.15472 0.00637 ## TweakHbondSegment 3 71 52 / 382 = 0.13613 0.00452 ## TweakMultimer 104 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 33 121 103 / 293 = 0.35154 0.00272 ## OneRotamer 0 83 58 / 576 = 0.10069 0.00750 ## ClashingRotamer 0 2 0 / 68 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 108 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 382 = 0.00785 0.00125 ## CloseGap 0 11 2 / 337 = 0.00593 0.00022 ## HealGap 0 24 13 / 327 = 0.03976 0.00072 ## MoveGap 0 0 0 / 289 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 343 = 0.00292 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 70 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1193 = 0.00084 0.00001 ## InsertFragment 0 10 3 / 354 = 0.00847 0.00326 ## TwoFragment 0 1 0 / 326 = 0.00000 0.00000 ## CrossOver 13 34 15 / 481 = 0.03119 0.01701 ## CrossAndInsert 8 3 1 / 303 = 0.00330 0.00002 ## ReduceClash 0 5 1 / 344 = 0.00291 0.00063 # Closing gap before 104 next to short segment # Closing gap before 74 next to short segment # Closing gap before 54 without wiggling. # generation 100: best score out of 20: T0287.try5-scwrl 187.42149 cost/residue, 173 clashes 0.17451 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 86 66 / 347 = 0.19020 0.00360 ## JiggleSubtree 0 21 18 / 368 = 0.04891 0.00716 ## JiggleSegment 1 1 0 / 19 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 53 = 0.00000 0.00000 ## OptSegment 0 1 0 / 76 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 24 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 27 = 0.00000 0.00000 ## TweakPhiSubtree 14 131 50 / 379 = 0.13193 0.00453 ## TweakPhiSegment 3 79 28 / 204 = 0.13725 0.00267 ## TweakPsiSubtree 1 123 92 / 355 = 0.25915 0.00372 ## TweakPsiSegment 0 149 108 / 367 = 0.29428 0.00434 ## TweakPsiPhiSubtree 65 151 88 / 498 = 0.17671 0.00600 ## TweakPsiPhiSegment 76 163 109 / 495 = 0.22020 0.00655 ## TweakHbondSubtree 2 125 84 / 539 = 0.15584 0.00634 ## TweakHbondSegment 3 73 53 / 388 = 0.13660 0.00466 ## TweakMultimer 106 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 35 121 105 / 300 = 0.35000 0.00266 ## OneRotamer 0 83 58 / 595 = 0.09748 0.00727 ## ClashingRotamer 0 2 0 / 68 = 0.00000 0.00000 ## ClusteredRotamer 6 6 0 / 108 = 0.00000 0.00000 ## ReduceBreak 0 9 3 / 384 = 0.00781 0.00124 ## CloseGap 0 11 2 / 341 = 0.00587 0.00022 ## HealGap 0 24 13 / 332 = 0.03916 0.00071 ## MoveGap 0 0 0 / 289 = 0.00000 0.00000 ## ReduceConstraint 1 7 1 / 343 = 0.00292 0.00066 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 70 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 1 / 1200 = 0.00083 0.00001 ## InsertFragment 0 10 3 / 354 = 0.00847 0.00326 ## TwoFragment 0 1 0 / 328 = 0.00000 0.00000 ## CrossOver 13 34 15 / 481 = 0.03119 0.01701 ## CrossAndInsert 8 3 1 / 304 = 0.00329 0.00002 ## ReduceClash 0 5 1 / 345 = 0.00290 0.00063 # command:# naming current conformation T0287.try5-opt1 # command: