mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0287.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0287/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1172703412 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.12107 sec, elapsed time= 6.18137 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.20106 sec, elapsed time= 6.27975 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0287 numbered 1 through 199 Created new target T0287 from T0287.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0287.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0287.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0287.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 8.93864 sec, elapsed time= 9.55102 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -9.04523 # GDT_score(maxd=8,maxw=2.9)= -8.70333 # GDT_score(maxd=8,maxw=3.2)= -8.42626 # GDT_score(maxd=8,maxw=3.5)= -8.10035 # GDT_score(maxd=10,maxw=3.8)= -8.79918 # GDT_score(maxd=10,maxw=4)= -8.56071 # GDT_score(maxd=10,maxw=4.2)= -8.34449 # GDT_score(maxd=12,maxw=4.3)= -9.14951 # GDT_score(maxd=12,maxw=4.5)= -8.92154 # GDT_score(maxd=12,maxw=4.7)= -8.71297 # GDT_score(maxd=14,maxw=5.2)= -9.0647 # GDT_score(maxd=14,maxw=5.5)= -8.78954 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_178514805.pdb -s /var/tmp/to_scwrl_178514805.seq -o /var/tmp/from_scwrl_178514805.pdb > /var/tmp/scwrl_178514805.log Error: can't open any of /var/tmp/from_scwrl_178514805.pdb or /var/tmp/from_scwrl_178514805_b.pdb or /var/tmp/from_scwrl_178514805_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -11.5578 # GDT_score(maxd=8,maxw=2.9)= -10.8654 # GDT_score(maxd=8,maxw=3.2)= -10.4139 # GDT_score(maxd=8,maxw=3.5)= -9.99511 # GDT_score(maxd=10,maxw=3.8)= -11.2627 # GDT_score(maxd=10,maxw=4)= -10.9741 # GDT_score(maxd=10,maxw=4.2)= -10.6864 # GDT_score(maxd=12,maxw=4.3)= -11.982 # GDT_score(maxd=12,maxw=4.5)= -11.6645 # GDT_score(maxd=12,maxw=4.7)= -11.3606 # GDT_score(maxd=14,maxw=5.2)= -11.8601 # GDT_score(maxd=14,maxw=5.5)= -11.4443 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_768007149.pdb -s /var/tmp/to_scwrl_768007149.seq -o /var/tmp/from_scwrl_768007149.pdb > /var/tmp/scwrl_768007149.log Error: can't open any of /var/tmp/from_scwrl_768007149.pdb or /var/tmp/from_scwrl_768007149_b.pdb or /var/tmp/from_scwrl_768007149_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -9.04523 # GDT_score(maxd=8,maxw=2.9)= -8.19483 # GDT_score(maxd=8,maxw=3.2)= -7.85056 # GDT_score(maxd=8,maxw=3.5)= -7.53076 # GDT_score(maxd=10,maxw=3.8)= -8.47891 # GDT_score(maxd=10,maxw=4)= -8.25597 # GDT_score(maxd=10,maxw=4.2)= -8.05426 # GDT_score(maxd=12,maxw=4.3)= -9.11358 # GDT_score(maxd=12,maxw=4.5)= -8.88511 # GDT_score(maxd=12,maxw=4.7)= -8.6567 # GDT_score(maxd=14,maxw=5.2)= -9.17935 # GDT_score(maxd=14,maxw=5.5)= -8.87053 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_820097447.pdb -s /var/tmp/to_scwrl_820097447.seq -o /var/tmp/from_scwrl_820097447.pdb > /var/tmp/scwrl_820097447.log Error: can't open any of /var/tmp/from_scwrl_820097447.pdb or /var/tmp/from_scwrl_820097447_b.pdb or /var/tmp/from_scwrl_820097447_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -10.5528 # GDT_score(maxd=8,maxw=2.9)= -10.359 # GDT_score(maxd=8,maxw=3.2)= -9.95321 # GDT_score(maxd=8,maxw=3.5)= -9.61695 # GDT_score(maxd=10,maxw=3.8)= -10.3964 # GDT_score(maxd=10,maxw=4)= -10.1781 # GDT_score(maxd=10,maxw=4.2)= -9.95879 # GDT_score(maxd=12,maxw=4.3)= -10.9692 # GDT_score(maxd=12,maxw=4.5)= -10.7269 # GDT_score(maxd=12,maxw=4.7)= -10.4729 # GDT_score(maxd=14,maxw=5.2)= -10.8554 # GDT_score(maxd=14,maxw=5.5)= -10.4351 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1099377976.pdb -s /var/tmp/to_scwrl_1099377976.seq -o /var/tmp/from_scwrl_1099377976.pdb > /var/tmp/scwrl_1099377976.log Error: can't open any of /var/tmp/from_scwrl_1099377976.pdb or /var/tmp/from_scwrl_1099377976_b.pdb or /var/tmp/from_scwrl_1099377976_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.41206 # GDT_score(maxd=8,maxw=2.9)= -6.55386 # GDT_score(maxd=8,maxw=3.2)= -6.36343 # GDT_score(maxd=8,maxw=3.5)= -6.20565 # GDT_score(maxd=10,maxw=3.8)= -6.98579 # GDT_score(maxd=10,maxw=4)= -6.86263 # GDT_score(maxd=10,maxw=4.2)= -6.7512 # GDT_score(maxd=12,maxw=4.3)= -7.54674 # GDT_score(maxd=12,maxw=4.5)= -7.41233 # GDT_score(maxd=12,maxw=4.7)= -7.28937 # GDT_score(maxd=14,maxw=5.2)= -7.76178 # GDT_score(maxd=14,maxw=5.5)= -7.54935 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1496142932.pdb -s /var/tmp/to_scwrl_1496142932.seq -o /var/tmp/from_scwrl_1496142932.pdb > /var/tmp/scwrl_1496142932.log Error: can't open any of /var/tmp/from_scwrl_1496142932.pdb or /var/tmp/from_scwrl_1496142932_b.pdb or /var/tmp/from_scwrl_1496142932_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0287.try1-opt2.pdb looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -11.809 # GDT_score(maxd=8,maxw=2.9)= -10.6412 # GDT_score(maxd=8,maxw=3.2)= -10.1801 # GDT_score(maxd=8,maxw=3.5)= -9.78132 # GDT_score(maxd=10,maxw=3.8)= -11.0029 # GDT_score(maxd=10,maxw=4)= -10.72 # GDT_score(maxd=10,maxw=4.2)= -10.4488 # GDT_score(maxd=12,maxw=4.3)= -11.647 # GDT_score(maxd=12,maxw=4.5)= -11.3512 # GDT_score(maxd=12,maxw=4.7)= -11.0606 # GDT_score(maxd=14,maxw=5.2)= -11.6151 # GDT_score(maxd=14,maxw=5.5)= -11.1879 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.477387 # GDT_score = -11.3065 # GDT_score(maxd=8,maxw=2.9)= -11.0776 # GDT_score(maxd=8,maxw=3.2)= -10.6914 # GDT_score(maxd=8,maxw=3.5)= -10.3032 # GDT_score(maxd=10,maxw=3.8)= -10.968 # GDT_score(maxd=10,maxw=4)= -10.7211 # GDT_score(maxd=10,maxw=4.2)= -10.4977 # GDT_score(maxd=12,maxw=4.3)= -11.2963 # GDT_score(maxd=12,maxw=4.5)= -11.0593 # GDT_score(maxd=12,maxw=4.7)= -10.8132 # GDT_score(maxd=14,maxw=5.2)= -10.9323 # GDT_score(maxd=14,maxw=5.5)= -10.529 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.376884 # GDT_score = -7.91457 # GDT_score(maxd=8,maxw=2.9)= -7.22508 # GDT_score(maxd=8,maxw=3.2)= -6.92461 # GDT_score(maxd=8,maxw=3.5)= -6.67565 # GDT_score(maxd=10,maxw=3.8)= -7.61488 # GDT_score(maxd=10,maxw=4)= -7.43514 # GDT_score(maxd=10,maxw=4.2)= -7.27252 # GDT_score(maxd=12,maxw=4.3)= -8.19294 # GDT_score(maxd=12,maxw=4.5)= -8.00748 # GDT_score(maxd=12,maxw=4.7)= -7.8378 # GDT_score(maxd=14,maxw=5.2)= -8.20611 # GDT_score(maxd=14,maxw=5.5)= -7.95931 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1-old.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1-scwrl-old.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2-old.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file short.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_911289753.pdb -s /var/tmp/to_scwrl_911289753.seq -o /var/tmp/from_scwrl_911289753.pdb > /var/tmp/scwrl_911289753.log Error: can't open any of /var/tmp/from_scwrl_911289753.pdb or /var/tmp/from_scwrl_911289753_b.pdb or /var/tmp/from_scwrl_911289753_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1515439847.pdb -s /var/tmp/to_scwrl_1515439847.seq -o /var/tmp/from_scwrl_1515439847.pdb > /var/tmp/scwrl_1515439847.log Error: can't open any of /var/tmp/from_scwrl_1515439847.pdb or /var/tmp/from_scwrl_1515439847_b.pdb or /var/tmp/from_scwrl_1515439847_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1649487852.pdb -s /var/tmp/to_scwrl_1649487852.seq -o /var/tmp/from_scwrl_1649487852.pdb > /var/tmp/scwrl_1649487852.log Error: can't open any of /var/tmp/from_scwrl_1649487852.pdb or /var/tmp/from_scwrl_1649487852_b.pdb or /var/tmp/from_scwrl_1649487852_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1018831253.pdb -s /var/tmp/to_scwrl_1018831253.seq -o /var/tmp/from_scwrl_1018831253.pdb > /var/tmp/scwrl_1018831253.log Error: can't open any of /var/tmp/from_scwrl_1018831253.pdb or /var/tmp/from_scwrl_1018831253_b.pdb or /var/tmp/from_scwrl_1018831253_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1954488349.pdb -s /var/tmp/to_scwrl_1954488349.seq -o /var/tmp/from_scwrl_1954488349.pdb > /var/tmp/scwrl_1954488349.log Error: can't open any of /var/tmp/from_scwrl_1954488349.pdb or /var/tmp/from_scwrl_1954488349_b.pdb or /var/tmp/from_scwrl_1954488349_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_289967780.pdb -s /var/tmp/to_scwrl_289967780.seq -o /var/tmp/from_scwrl_289967780.pdb > /var/tmp/scwrl_289967780.log Error: can't open any of /var/tmp/from_scwrl_289967780.pdb or /var/tmp/from_scwrl_289967780_b.pdb or /var/tmp/from_scwrl_289967780_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1036797898.pdb -s /var/tmp/to_scwrl_1036797898.seq -o /var/tmp/from_scwrl_1036797898.pdb > /var/tmp/scwrl_1036797898.log Error: can't open any of /var/tmp/from_scwrl_1036797898.pdb or /var/tmp/from_scwrl_1036797898_b.pdb or /var/tmp/from_scwrl_1036797898_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1039000039.pdb -s /var/tmp/to_scwrl_1039000039.seq -o /var/tmp/from_scwrl_1039000039.pdb > /var/tmp/scwrl_1039000039.log Error: can't open any of /var/tmp/from_scwrl_1039000039.pdb or /var/tmp/from_scwrl_1039000039_b.pdb or /var/tmp/from_scwrl_1039000039_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_451062444.pdb -s /var/tmp/to_scwrl_451062444.seq -o /var/tmp/from_scwrl_451062444.pdb > /var/tmp/scwrl_451062444.log Error: can't open any of /var/tmp/from_scwrl_451062444.pdb or /var/tmp/from_scwrl_451062444_b.pdb or /var/tmp/from_scwrl_451062444_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_695820849.pdb -s /var/tmp/to_scwrl_695820849.seq -o /var/tmp/from_scwrl_695820849.pdb > /var/tmp/scwrl_695820849.log Error: can't open any of /var/tmp/from_scwrl_695820849.pdb or /var/tmp/from_scwrl_695820849_b.pdb or /var/tmp/from_scwrl_695820849_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2120899541.pdb -s /var/tmp/to_scwrl_2120899541.seq -o /var/tmp/from_scwrl_2120899541.pdb > /var/tmp/scwrl_2120899541.log Error: can't open any of /var/tmp/from_scwrl_2120899541.pdb or /var/tmp/from_scwrl_2120899541_b.pdb or /var/tmp/from_scwrl_2120899541_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1795496228.pdb -s /var/tmp/to_scwrl_1795496228.seq -o /var/tmp/from_scwrl_1795496228.pdb > /var/tmp/scwrl_1795496228.log Error: can't open any of /var/tmp/from_scwrl_1795496228.pdb or /var/tmp/from_scwrl_1795496228_b.pdb or /var/tmp/from_scwrl_1795496228_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_998244760.pdb -s /var/tmp/to_scwrl_998244760.seq -o /var/tmp/from_scwrl_998244760.pdb > /var/tmp/scwrl_998244760.log Error: can't open any of /var/tmp/from_scwrl_998244760.pdb or /var/tmp/from_scwrl_998244760_b.pdb or /var/tmp/from_scwrl_998244760_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1863685928.pdb -s /var/tmp/to_scwrl_1863685928.seq -o /var/tmp/from_scwrl_1863685928.pdb > /var/tmp/scwrl_1863685928.log Error: can't open any of /var/tmp/from_scwrl_1863685928.pdb or /var/tmp/from_scwrl_1863685928_b.pdb or /var/tmp/from_scwrl_1863685928_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_401918151.pdb -s /var/tmp/to_scwrl_401918151.seq -o /var/tmp/from_scwrl_401918151.pdb > /var/tmp/scwrl_401918151.log Error: can't open any of /var/tmp/from_scwrl_401918151.pdb or /var/tmp/from_scwrl_401918151_b.pdb or /var/tmp/from_scwrl_401918151_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1501754467.pdb -s /var/tmp/to_scwrl_1501754467.seq -o /var/tmp/from_scwrl_1501754467.pdb > /var/tmp/scwrl_1501754467.log Error: can't open any of /var/tmp/from_scwrl_1501754467.pdb or /var/tmp/from_scwrl_1501754467_b.pdb or /var/tmp/from_scwrl_1501754467_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1043968449.pdb -s /var/tmp/to_scwrl_1043968449.seq -o /var/tmp/from_scwrl_1043968449.pdb > /var/tmp/scwrl_1043968449.log Error: can't open any of /var/tmp/from_scwrl_1043968449.pdb or /var/tmp/from_scwrl_1043968449_b.pdb or /var/tmp/from_scwrl_1043968449_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1786633272.pdb -s /var/tmp/to_scwrl_1786633272.seq -o /var/tmp/from_scwrl_1786633272.pdb > /var/tmp/scwrl_1786633272.log Error: can't open any of /var/tmp/from_scwrl_1786633272.pdb or /var/tmp/from_scwrl_1786633272_b.pdb or /var/tmp/from_scwrl_1786633272_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_988315357.pdb -s /var/tmp/to_scwrl_988315357.seq -o /var/tmp/from_scwrl_988315357.pdb > /var/tmp/scwrl_988315357.log Error: can't open any of /var/tmp/from_scwrl_988315357.pdb or /var/tmp/from_scwrl_988315357_b.pdb or /var/tmp/from_scwrl_988315357_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1538002851.pdb -s /var/tmp/to_scwrl_1538002851.seq -o /var/tmp/from_scwrl_1538002851.pdb > /var/tmp/scwrl_1538002851.log Error: can't open any of /var/tmp/from_scwrl_1538002851.pdb or /var/tmp/from_scwrl_1538002851_b.pdb or /var/tmp/from_scwrl_1538002851_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1227428539.pdb -s /var/tmp/to_scwrl_1227428539.seq -o /var/tmp/from_scwrl_1227428539.pdb > /var/tmp/scwrl_1227428539.log Error: can't open any of /var/tmp/from_scwrl_1227428539.pdb or /var/tmp/from_scwrl_1227428539_b.pdb or /var/tmp/from_scwrl_1227428539_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_192669555.pdb -s /var/tmp/to_scwrl_192669555.seq -o /var/tmp/from_scwrl_192669555.pdb > /var/tmp/scwrl_192669555.log Error: can't open any of /var/tmp/from_scwrl_192669555.pdb or /var/tmp/from_scwrl_192669555_b.pdb or /var/tmp/from_scwrl_192669555_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1010492829.pdb -s /var/tmp/to_scwrl_1010492829.seq -o /var/tmp/from_scwrl_1010492829.pdb > /var/tmp/scwrl_1010492829.log Error: can't open any of /var/tmp/from_scwrl_1010492829.pdb or /var/tmp/from_scwrl_1010492829_b.pdb or /var/tmp/from_scwrl_1010492829_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1096598317.pdb -s /var/tmp/to_scwrl_1096598317.seq -o /var/tmp/from_scwrl_1096598317.pdb > /var/tmp/scwrl_1096598317.log Error: can't open any of /var/tmp/from_scwrl_1096598317.pdb or /var/tmp/from_scwrl_1096598317_b.pdb or /var/tmp/from_scwrl_1096598317_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1020804391.pdb -s /var/tmp/to_scwrl_1020804391.seq -o /var/tmp/from_scwrl_1020804391.pdb > /var/tmp/scwrl_1020804391.log Error: can't open any of /var/tmp/from_scwrl_1020804391.pdb or /var/tmp/from_scwrl_1020804391_b.pdb or /var/tmp/from_scwrl_1020804391_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_34399203.pdb -s /var/tmp/to_scwrl_34399203.seq -o /var/tmp/from_scwrl_34399203.pdb > /var/tmp/scwrl_34399203.log Error: can't open any of /var/tmp/from_scwrl_34399203.pdb or /var/tmp/from_scwrl_34399203_b.pdb or /var/tmp/from_scwrl_34399203_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1275113123.pdb -s /var/tmp/to_scwrl_1275113123.seq -o /var/tmp/from_scwrl_1275113123.pdb > /var/tmp/scwrl_1275113123.log Error: can't open any of /var/tmp/from_scwrl_1275113123.pdb or /var/tmp/from_scwrl_1275113123_b.pdb or /var/tmp/from_scwrl_1275113123_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1788811539.pdb -s /var/tmp/to_scwrl_1788811539.seq -o /var/tmp/from_scwrl_1788811539.pdb > /var/tmp/scwrl_1788811539.log Error: can't open any of /var/tmp/from_scwrl_1788811539.pdb or /var/tmp/from_scwrl_1788811539_b.pdb or /var/tmp/from_scwrl_1788811539_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_854496650.pdb -s /var/tmp/to_scwrl_854496650.seq -o /var/tmp/from_scwrl_854496650.pdb > /var/tmp/scwrl_854496650.log Error: can't open any of /var/tmp/from_scwrl_854496650.pdb or /var/tmp/from_scwrl_854496650_b.pdb or /var/tmp/from_scwrl_854496650_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_227007453.pdb -s /var/tmp/to_scwrl_227007453.seq -o /var/tmp/from_scwrl_227007453.pdb > /var/tmp/scwrl_227007453.log Error: can't open any of /var/tmp/from_scwrl_227007453.pdb or /var/tmp/from_scwrl_227007453_b.pdb or /var/tmp/from_scwrl_227007453_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1137470825.pdb -s /var/tmp/to_scwrl_1137470825.seq -o /var/tmp/from_scwrl_1137470825.pdb > /var/tmp/scwrl_1137470825.log Error: can't open any of /var/tmp/from_scwrl_1137470825.pdb or /var/tmp/from_scwrl_1137470825_b.pdb or /var/tmp/from_scwrl_1137470825_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1765786403.pdb -s /var/tmp/to_scwrl_1765786403.seq -o /var/tmp/from_scwrl_1765786403.pdb > /var/tmp/scwrl_1765786403.log Error: can't open any of /var/tmp/from_scwrl_1765786403.pdb or /var/tmp/from_scwrl_1765786403_b.pdb or /var/tmp/from_scwrl_1765786403_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1742447300.pdb -s /var/tmp/to_scwrl_1742447300.seq -o /var/tmp/from_scwrl_1742447300.pdb > /var/tmp/scwrl_1742447300.log Error: can't open any of /var/tmp/from_scwrl_1742447300.pdb or /var/tmp/from_scwrl_1742447300_b.pdb or /var/tmp/from_scwrl_1742447300_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_639475031.pdb -s /var/tmp/to_scwrl_639475031.seq -o /var/tmp/from_scwrl_639475031.pdb > /var/tmp/scwrl_639475031.log Error: can't open any of /var/tmp/from_scwrl_639475031.pdb or /var/tmp/from_scwrl_639475031_b.pdb or /var/tmp/from_scwrl_639475031_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_637134009.pdb -s /var/tmp/to_scwrl_637134009.seq -o /var/tmp/from_scwrl_637134009.pdb > /var/tmp/scwrl_637134009.log Error: can't open any of /var/tmp/from_scwrl_637134009.pdb or /var/tmp/from_scwrl_637134009_b.pdb or /var/tmp/from_scwrl_637134009_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1549452003.pdb -s /var/tmp/to_scwrl_1549452003.seq -o /var/tmp/from_scwrl_1549452003.pdb > /var/tmp/scwrl_1549452003.log Error: can't open any of /var/tmp/from_scwrl_1549452003.pdb or /var/tmp/from_scwrl_1549452003_b.pdb or /var/tmp/from_scwrl_1549452003_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_929442811.pdb -s /var/tmp/to_scwrl_929442811.seq -o /var/tmp/from_scwrl_929442811.pdb > /var/tmp/scwrl_929442811.log Error: can't open any of /var/tmp/from_scwrl_929442811.pdb or /var/tmp/from_scwrl_929442811_b.pdb or /var/tmp/from_scwrl_929442811_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1673931906.pdb -s /var/tmp/to_scwrl_1673931906.seq -o /var/tmp/from_scwrl_1673931906.pdb > /var/tmp/scwrl_1673931906.log Error: can't open any of /var/tmp/from_scwrl_1673931906.pdb or /var/tmp/from_scwrl_1673931906_b.pdb or /var/tmp/from_scwrl_1673931906_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_440968395.pdb -s /var/tmp/to_scwrl_440968395.seq -o /var/tmp/from_scwrl_440968395.pdb > /var/tmp/scwrl_440968395.log Error: can't open any of /var/tmp/from_scwrl_440968395.pdb or /var/tmp/from_scwrl_440968395_b.pdb or /var/tmp/from_scwrl_440968395_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1380505255.pdb -s /var/tmp/to_scwrl_1380505255.seq -o /var/tmp/from_scwrl_1380505255.pdb > /var/tmp/scwrl_1380505255.log Error: can't open any of /var/tmp/from_scwrl_1380505255.pdb or /var/tmp/from_scwrl_1380505255_b.pdb or /var/tmp/from_scwrl_1380505255_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_222269109.pdb -s /var/tmp/to_scwrl_222269109.seq -o /var/tmp/from_scwrl_222269109.pdb > /var/tmp/scwrl_222269109.log Error: can't open any of /var/tmp/from_scwrl_222269109.pdb or /var/tmp/from_scwrl_222269109_b.pdb or /var/tmp/from_scwrl_222269109_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_414384290.pdb -s /var/tmp/to_scwrl_414384290.seq -o /var/tmp/from_scwrl_414384290.pdb > /var/tmp/scwrl_414384290.log Error: can't open any of /var/tmp/from_scwrl_414384290.pdb or /var/tmp/from_scwrl_414384290_b.pdb or /var/tmp/from_scwrl_414384290_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1028517837.pdb -s /var/tmp/to_scwrl_1028517837.seq -o /var/tmp/from_scwrl_1028517837.pdb > /var/tmp/scwrl_1028517837.log Error: can't open any of /var/tmp/from_scwrl_1028517837.pdb or /var/tmp/from_scwrl_1028517837_b.pdb or /var/tmp/from_scwrl_1028517837_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1220513868.pdb -s /var/tmp/to_scwrl_1220513868.seq -o /var/tmp/from_scwrl_1220513868.pdb > /var/tmp/scwrl_1220513868.log Error: can't open any of /var/tmp/from_scwrl_1220513868.pdb or /var/tmp/from_scwrl_1220513868_b.pdb or /var/tmp/from_scwrl_1220513868_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_130586571.pdb -s /var/tmp/to_scwrl_130586571.seq -o /var/tmp/from_scwrl_130586571.pdb > /var/tmp/scwrl_130586571.log Error: can't open any of /var/tmp/from_scwrl_130586571.pdb or /var/tmp/from_scwrl_130586571_b.pdb or /var/tmp/from_scwrl_130586571_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1430435988.pdb -s /var/tmp/to_scwrl_1430435988.seq -o /var/tmp/from_scwrl_1430435988.pdb > /var/tmp/scwrl_1430435988.log Error: can't open any of /var/tmp/from_scwrl_1430435988.pdb or /var/tmp/from_scwrl_1430435988_b.pdb or /var/tmp/from_scwrl_1430435988_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_574784689.pdb -s /var/tmp/to_scwrl_574784689.seq -o /var/tmp/from_scwrl_574784689.pdb > /var/tmp/scwrl_574784689.log Error: can't open any of /var/tmp/from_scwrl_574784689.pdb or /var/tmp/from_scwrl_574784689_b.pdb or /var/tmp/from_scwrl_574784689_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1174555020.pdb -s /var/tmp/to_scwrl_1174555020.seq -o /var/tmp/from_scwrl_1174555020.pdb > /var/tmp/scwrl_1174555020.log Error: can't open any of /var/tmp/from_scwrl_1174555020.pdb or /var/tmp/from_scwrl_1174555020_b.pdb or /var/tmp/from_scwrl_1174555020_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1069585614.pdb -s /var/tmp/to_scwrl_1069585614.seq -o /var/tmp/from_scwrl_1069585614.pdb > /var/tmp/scwrl_1069585614.log Error: can't open any of /var/tmp/from_scwrl_1069585614.pdb or /var/tmp/from_scwrl_1069585614_b.pdb or /var/tmp/from_scwrl_1069585614_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1563100045.pdb -s /var/tmp/to_scwrl_1563100045.seq -o /var/tmp/from_scwrl_1563100045.pdb > /var/tmp/scwrl_1563100045.log Error: can't open any of /var/tmp/from_scwrl_1563100045.pdb or /var/tmp/from_scwrl_1563100045_b.pdb or /var/tmp/from_scwrl_1563100045_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_565074225.pdb -s /var/tmp/to_scwrl_565074225.seq -o /var/tmp/from_scwrl_565074225.pdb > /var/tmp/scwrl_565074225.log Error: can't open any of /var/tmp/from_scwrl_565074225.pdb or /var/tmp/from_scwrl_565074225_b.pdb or /var/tmp/from_scwrl_565074225_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_149530506.pdb -s /var/tmp/to_scwrl_149530506.seq -o /var/tmp/from_scwrl_149530506.pdb > /var/tmp/scwrl_149530506.log Error: can't open any of /var/tmp/from_scwrl_149530506.pdb or /var/tmp/from_scwrl_149530506_b.pdb or /var/tmp/from_scwrl_149530506_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1755769600.pdb -s /var/tmp/to_scwrl_1755769600.seq -o /var/tmp/from_scwrl_1755769600.pdb > /var/tmp/scwrl_1755769600.log Error: can't open any of /var/tmp/from_scwrl_1755769600.pdb or /var/tmp/from_scwrl_1755769600_b.pdb or /var/tmp/from_scwrl_1755769600_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1575567053.pdb -s /var/tmp/to_scwrl_1575567053.seq -o /var/tmp/from_scwrl_1575567053.pdb > /var/tmp/scwrl_1575567053.log Error: can't open any of /var/tmp/from_scwrl_1575567053.pdb or /var/tmp/from_scwrl_1575567053_b.pdb or /var/tmp/from_scwrl_1575567053_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1246128823.pdb -s /var/tmp/to_scwrl_1246128823.seq -o /var/tmp/from_scwrl_1246128823.pdb > /var/tmp/scwrl_1246128823.log Error: can't open any of /var/tmp/from_scwrl_1246128823.pdb or /var/tmp/from_scwrl_1246128823_b.pdb or /var/tmp/from_scwrl_1246128823_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_629090344.pdb -s /var/tmp/to_scwrl_629090344.seq -o /var/tmp/from_scwrl_629090344.pdb > /var/tmp/scwrl_629090344.log Error: can't open any of /var/tmp/from_scwrl_629090344.pdb or /var/tmp/from_scwrl_629090344_b.pdb or /var/tmp/from_scwrl_629090344_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1609966257.pdb -s /var/tmp/to_scwrl_1609966257.seq -o /var/tmp/from_scwrl_1609966257.pdb > /var/tmp/scwrl_1609966257.log Error: can't open any of /var/tmp/from_scwrl_1609966257.pdb or /var/tmp/from_scwrl_1609966257_b.pdb or /var/tmp/from_scwrl_1609966257_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_373758300.pdb -s /var/tmp/to_scwrl_373758300.seq -o /var/tmp/from_scwrl_373758300.pdb > /var/tmp/scwrl_373758300.log Error: can't open any of /var/tmp/from_scwrl_373758300.pdb or /var/tmp/from_scwrl_373758300_b.pdb or /var/tmp/from_scwrl_373758300_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_270418237.pdb -s /var/tmp/to_scwrl_270418237.seq -o /var/tmp/from_scwrl_270418237.pdb > /var/tmp/scwrl_270418237.log Error: can't open any of /var/tmp/from_scwrl_270418237.pdb or /var/tmp/from_scwrl_270418237_b.pdb or /var/tmp/from_scwrl_270418237_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_316979260.pdb -s /var/tmp/to_scwrl_316979260.seq -o /var/tmp/from_scwrl_316979260.pdb > /var/tmp/scwrl_316979260.log Error: can't open any of /var/tmp/from_scwrl_316979260.pdb or /var/tmp/from_scwrl_316979260_b.pdb or /var/tmp/from_scwrl_316979260_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_600765754.pdb -s /var/tmp/to_scwrl_600765754.seq -o /var/tmp/from_scwrl_600765754.pdb > /var/tmp/scwrl_600765754.log Error: can't open any of /var/tmp/from_scwrl_600765754.pdb or /var/tmp/from_scwrl_600765754_b.pdb or /var/tmp/from_scwrl_600765754_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1407889062.pdb -s /var/tmp/to_scwrl_1407889062.seq -o /var/tmp/from_scwrl_1407889062.pdb > /var/tmp/scwrl_1407889062.log Error: can't open any of /var/tmp/from_scwrl_1407889062.pdb or /var/tmp/from_scwrl_1407889062_b.pdb or /var/tmp/from_scwrl_1407889062_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2082765663.pdb -s /var/tmp/to_scwrl_2082765663.seq -o /var/tmp/from_scwrl_2082765663.pdb > /var/tmp/scwrl_2082765663.log Error: can't open any of /var/tmp/from_scwrl_2082765663.pdb or /var/tmp/from_scwrl_2082765663_b.pdb or /var/tmp/from_scwrl_2082765663_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_195729407.pdb -s /var/tmp/to_scwrl_195729407.seq -o /var/tmp/from_scwrl_195729407.pdb > /var/tmp/scwrl_195729407.log Error: can't open any of /var/tmp/from_scwrl_195729407.pdb or /var/tmp/from_scwrl_195729407_b.pdb or /var/tmp/from_scwrl_195729407_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2047364093.pdb -s /var/tmp/to_scwrl_2047364093.seq -o /var/tmp/from_scwrl_2047364093.pdb > /var/tmp/scwrl_2047364093.log Error: can't open any of /var/tmp/from_scwrl_2047364093.pdb or /var/tmp/from_scwrl_2047364093_b.pdb or /var/tmp/from_scwrl_2047364093_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_572416026.pdb -s /var/tmp/to_scwrl_572416026.seq -o /var/tmp/from_scwrl_572416026.pdb > /var/tmp/scwrl_572416026.log Error: can't open any of /var/tmp/from_scwrl_572416026.pdb or /var/tmp/from_scwrl_572416026_b.pdb or /var/tmp/from_scwrl_572416026_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1745181410.pdb -s /var/tmp/to_scwrl_1745181410.seq -o /var/tmp/from_scwrl_1745181410.pdb > /var/tmp/scwrl_1745181410.log Error: can't open any of /var/tmp/from_scwrl_1745181410.pdb or /var/tmp/from_scwrl_1745181410_b.pdb or /var/tmp/from_scwrl_1745181410_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_829323258.pdb -s /var/tmp/to_scwrl_829323258.seq -o /var/tmp/from_scwrl_829323258.pdb > /var/tmp/scwrl_829323258.log Error: can't open any of /var/tmp/from_scwrl_829323258.pdb or /var/tmp/from_scwrl_829323258_b.pdb or /var/tmp/from_scwrl_829323258_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_98864285.pdb -s /var/tmp/to_scwrl_98864285.seq -o /var/tmp/from_scwrl_98864285.pdb > /var/tmp/scwrl_98864285.log Error: can't open any of /var/tmp/from_scwrl_98864285.pdb or /var/tmp/from_scwrl_98864285_b.pdb or /var/tmp/from_scwrl_98864285_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_38666159.pdb -s /var/tmp/to_scwrl_38666159.seq -o /var/tmp/from_scwrl_38666159.pdb > /var/tmp/scwrl_38666159.log Error: can't open any of /var/tmp/from_scwrl_38666159.pdb or /var/tmp/from_scwrl_38666159_b.pdb or /var/tmp/from_scwrl_38666159_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_62344866.pdb -s /var/tmp/to_scwrl_62344866.seq -o /var/tmp/from_scwrl_62344866.pdb > /var/tmp/scwrl_62344866.log Error: can't open any of /var/tmp/from_scwrl_62344866.pdb or /var/tmp/from_scwrl_62344866_b.pdb or /var/tmp/from_scwrl_62344866_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_321133394.pdb -s /var/tmp/to_scwrl_321133394.seq -o /var/tmp/from_scwrl_321133394.pdb > /var/tmp/scwrl_321133394.log Error: can't open any of /var/tmp/from_scwrl_321133394.pdb or /var/tmp/from_scwrl_321133394_b.pdb or /var/tmp/from_scwrl_321133394_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_453050449.pdb -s /var/tmp/to_scwrl_453050449.seq -o /var/tmp/from_scwrl_453050449.pdb > /var/tmp/scwrl_453050449.log Error: can't open any of /var/tmp/from_scwrl_453050449.pdb or /var/tmp/from_scwrl_453050449_b.pdb or /var/tmp/from_scwrl_453050449_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1090862702.pdb -s /var/tmp/to_scwrl_1090862702.seq -o /var/tmp/from_scwrl_1090862702.pdb > /var/tmp/scwrl_1090862702.log Error: can't open any of /var/tmp/from_scwrl_1090862702.pdb or /var/tmp/from_scwrl_1090862702_b.pdb or /var/tmp/from_scwrl_1090862702_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1541647262.pdb -s /var/tmp/to_scwrl_1541647262.seq -o /var/tmp/from_scwrl_1541647262.pdb > /var/tmp/scwrl_1541647262.log Error: can't open any of /var/tmp/from_scwrl_1541647262.pdb or /var/tmp/from_scwrl_1541647262_b.pdb or /var/tmp/from_scwrl_1541647262_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_583637020.pdb -s /var/tmp/to_scwrl_583637020.seq -o /var/tmp/from_scwrl_583637020.pdb > /var/tmp/scwrl_583637020.log Error: can't open any of /var/tmp/from_scwrl_583637020.pdb or /var/tmp/from_scwrl_583637020_b.pdb or /var/tmp/from_scwrl_583637020_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_373815044.pdb -s /var/tmp/to_scwrl_373815044.seq -o /var/tmp/from_scwrl_373815044.pdb > /var/tmp/scwrl_373815044.log Error: can't open any of /var/tmp/from_scwrl_373815044.pdb or /var/tmp/from_scwrl_373815044_b.pdb or /var/tmp/from_scwrl_373815044_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2116431951.pdb -s /var/tmp/to_scwrl_2116431951.seq -o /var/tmp/from_scwrl_2116431951.pdb > /var/tmp/scwrl_2116431951.log Error: can't open any of /var/tmp/from_scwrl_2116431951.pdb or /var/tmp/from_scwrl_2116431951_b.pdb or /var/tmp/from_scwrl_2116431951_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1758192040.pdb -s /var/tmp/to_scwrl_1758192040.seq -o /var/tmp/from_scwrl_1758192040.pdb > /var/tmp/scwrl_1758192040.log Error: can't open any of /var/tmp/from_scwrl_1758192040.pdb or /var/tmp/from_scwrl_1758192040_b.pdb or /var/tmp/from_scwrl_1758192040_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1443400657.pdb -s /var/tmp/to_scwrl_1443400657.seq -o /var/tmp/from_scwrl_1443400657.pdb > /var/tmp/scwrl_1443400657.log Error: can't open any of /var/tmp/from_scwrl_1443400657.pdb or /var/tmp/from_scwrl_1443400657_b.pdb or /var/tmp/from_scwrl_1443400657_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1532048350.pdb -s /var/tmp/to_scwrl_1532048350.seq -o /var/tmp/from_scwrl_1532048350.pdb > /var/tmp/scwrl_1532048350.log Error: can't open any of /var/tmp/from_scwrl_1532048350.pdb or /var/tmp/from_scwrl_1532048350_b.pdb or /var/tmp/from_scwrl_1532048350_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_175782619.pdb -s /var/tmp/to_scwrl_175782619.seq -o /var/tmp/from_scwrl_175782619.pdb > /var/tmp/scwrl_175782619.log Error: can't open any of /var/tmp/from_scwrl_175782619.pdb or /var/tmp/from_scwrl_175782619_b.pdb or /var/tmp/from_scwrl_175782619_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1592931163.pdb -s /var/tmp/to_scwrl_1592931163.seq -o /var/tmp/from_scwrl_1592931163.pdb > /var/tmp/scwrl_1592931163.log Error: can't open any of /var/tmp/from_scwrl_1592931163.pdb or /var/tmp/from_scwrl_1592931163_b.pdb or /var/tmp/from_scwrl_1592931163_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1140334303.pdb -s /var/tmp/to_scwrl_1140334303.seq -o /var/tmp/from_scwrl_1140334303.pdb > /var/tmp/scwrl_1140334303.log Error: can't open any of /var/tmp/from_scwrl_1140334303.pdb or /var/tmp/from_scwrl_1140334303_b.pdb or /var/tmp/from_scwrl_1140334303_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1751349672.pdb -s /var/tmp/to_scwrl_1751349672.seq -o /var/tmp/from_scwrl_1751349672.pdb > /var/tmp/scwrl_1751349672.log Error: can't open any of /var/tmp/from_scwrl_1751349672.pdb or /var/tmp/from_scwrl_1751349672_b.pdb or /var/tmp/from_scwrl_1751349672_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_691576341.pdb -s /var/tmp/to_scwrl_691576341.seq -o /var/tmp/from_scwrl_691576341.pdb > /var/tmp/scwrl_691576341.log Error: can't open any of /var/tmp/from_scwrl_691576341.pdb or /var/tmp/from_scwrl_691576341_b.pdb or /var/tmp/from_scwrl_691576341_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1769424648.pdb -s /var/tmp/to_scwrl_1769424648.seq -o /var/tmp/from_scwrl_1769424648.pdb > /var/tmp/scwrl_1769424648.log Error: can't open any of /var/tmp/from_scwrl_1769424648.pdb or /var/tmp/from_scwrl_1769424648_b.pdb or /var/tmp/from_scwrl_1769424648_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1213832282.pdb -s /var/tmp/to_scwrl_1213832282.seq -o /var/tmp/from_scwrl_1213832282.pdb > /var/tmp/scwrl_1213832282.log Error: can't open any of /var/tmp/from_scwrl_1213832282.pdb or /var/tmp/from_scwrl_1213832282_b.pdb or /var/tmp/from_scwrl_1213832282_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1065334641.pdb -s /var/tmp/to_scwrl_1065334641.seq -o /var/tmp/from_scwrl_1065334641.pdb > /var/tmp/scwrl_1065334641.log Error: can't open any of /var/tmp/from_scwrl_1065334641.pdb or /var/tmp/from_scwrl_1065334641_b.pdb or /var/tmp/from_scwrl_1065334641_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2039842885.pdb -s /var/tmp/to_scwrl_2039842885.seq -o /var/tmp/from_scwrl_2039842885.pdb > /var/tmp/scwrl_2039842885.log Error: can't open any of /var/tmp/from_scwrl_2039842885.pdb or /var/tmp/from_scwrl_2039842885_b.pdb or /var/tmp/from_scwrl_2039842885_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1530811543.pdb -s /var/tmp/to_scwrl_1530811543.seq -o /var/tmp/from_scwrl_1530811543.pdb > /var/tmp/scwrl_1530811543.log Error: can't open any of /var/tmp/from_scwrl_1530811543.pdb or /var/tmp/from_scwrl_1530811543_b.pdb or /var/tmp/from_scwrl_1530811543_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1666100394.pdb -s /var/tmp/to_scwrl_1666100394.seq -o /var/tmp/from_scwrl_1666100394.pdb > /var/tmp/scwrl_1666100394.log Error: can't open any of /var/tmp/from_scwrl_1666100394.pdb or /var/tmp/from_scwrl_1666100394_b.pdb or /var/tmp/from_scwrl_1666100394_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1300248300.pdb -s /var/tmp/to_scwrl_1300248300.seq -o /var/tmp/from_scwrl_1300248300.pdb > /var/tmp/scwrl_1300248300.log Error: can't open any of /var/tmp/from_scwrl_1300248300.pdb or /var/tmp/from_scwrl_1300248300_b.pdb or /var/tmp/from_scwrl_1300248300_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1466093559.pdb -s /var/tmp/to_scwrl_1466093559.seq -o /var/tmp/from_scwrl_1466093559.pdb > /var/tmp/scwrl_1466093559.log Error: can't open any of /var/tmp/from_scwrl_1466093559.pdb or /var/tmp/from_scwrl_1466093559_b.pdb or /var/tmp/from_scwrl_1466093559_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1861829802.pdb -s /var/tmp/to_scwrl_1861829802.seq -o /var/tmp/from_scwrl_1861829802.pdb > /var/tmp/scwrl_1861829802.log Error: can't open any of /var/tmp/from_scwrl_1861829802.pdb or /var/tmp/from_scwrl_1861829802_b.pdb or /var/tmp/from_scwrl_1861829802_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1200128746.pdb -s /var/tmp/to_scwrl_1200128746.seq -o /var/tmp/from_scwrl_1200128746.pdb > /var/tmp/scwrl_1200128746.log Error: can't open any of /var/tmp/from_scwrl_1200128746.pdb or /var/tmp/from_scwrl_1200128746_b.pdb or /var/tmp/from_scwrl_1200128746_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2038509585.pdb -s /var/tmp/to_scwrl_2038509585.seq -o /var/tmp/from_scwrl_2038509585.pdb > /var/tmp/scwrl_2038509585.log Error: can't open any of /var/tmp/from_scwrl_2038509585.pdb or /var/tmp/from_scwrl_2038509585_b.pdb or /var/tmp/from_scwrl_2038509585_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1459527565.pdb -s /var/tmp/to_scwrl_1459527565.seq -o /var/tmp/from_scwrl_1459527565.pdb > /var/tmp/scwrl_1459527565.log Error: can't open any of /var/tmp/from_scwrl_1459527565.pdb or /var/tmp/from_scwrl_1459527565_b.pdb or /var/tmp/from_scwrl_1459527565_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2029452004.pdb -s /var/tmp/to_scwrl_2029452004.seq -o /var/tmp/from_scwrl_2029452004.pdb > /var/tmp/scwrl_2029452004.log Error: can't open any of /var/tmp/from_scwrl_2029452004.pdb or /var/tmp/from_scwrl_2029452004_b.pdb or /var/tmp/from_scwrl_2029452004_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2137373871.pdb -s /var/tmp/to_scwrl_2137373871.seq -o /var/tmp/from_scwrl_2137373871.pdb > /var/tmp/scwrl_2137373871.log Error: can't open any of /var/tmp/from_scwrl_2137373871.pdb or /var/tmp/from_scwrl_2137373871_b.pdb or /var/tmp/from_scwrl_2137373871_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1498193724.pdb -s /var/tmp/to_scwrl_1498193724.seq -o /var/tmp/from_scwrl_1498193724.pdb > /var/tmp/scwrl_1498193724.log Error: can't open any of /var/tmp/from_scwrl_1498193724.pdb or /var/tmp/from_scwrl_1498193724_b.pdb or /var/tmp/from_scwrl_1498193724_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2091796870.pdb -s /var/tmp/to_scwrl_2091796870.seq -o /var/tmp/from_scwrl_2091796870.pdb > /var/tmp/scwrl_2091796870.log Error: can't open any of /var/tmp/from_scwrl_2091796870.pdb or /var/tmp/from_scwrl_2091796870_b.pdb or /var/tmp/from_scwrl_2091796870_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_311023618.pdb -s /var/tmp/to_scwrl_311023618.seq -o /var/tmp/from_scwrl_311023618.pdb > /var/tmp/scwrl_311023618.log Error: can't open any of /var/tmp/from_scwrl_311023618.pdb or /var/tmp/from_scwrl_311023618_b.pdb or /var/tmp/from_scwrl_311023618_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_AL1.pdb.gz failed. # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1951244173.pdb -s /var/tmp/to_scwrl_1951244173.seq -o /var/tmp/from_scwrl_1951244173.pdb > /var/tmp/scwrl_1951244173.log Error: can't open any of /var/tmp/from_scwrl_1951244173.pdb or /var/tmp/from_scwrl_1951244173_b.pdb or /var/tmp/from_scwrl_1951244173_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed. # naming current conformation MIG_FROST_FLEX_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1035175927.pdb -s /var/tmp/to_scwrl_1035175927.seq -o /var/tmp/from_scwrl_1035175927.pdb > /var/tmp/scwrl_1035175927.log Error: can't open any of /var/tmp/from_scwrl_1035175927.pdb or /var/tmp/from_scwrl_1035175927_b.pdb or /var/tmp/from_scwrl_1035175927_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_FLEX_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1852670881.pdb -s /var/tmp/to_scwrl_1852670881.seq -o /var/tmp/from_scwrl_1852670881.pdb > /var/tmp/scwrl_1852670881.log Error: can't open any of /var/tmp/from_scwrl_1852670881.pdb or /var/tmp/from_scwrl_1852670881_b.pdb or /var/tmp/from_scwrl_1852670881_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_387397547.pdb -s /var/tmp/to_scwrl_387397547.seq -o /var/tmp/from_scwrl_387397547.pdb > /var/tmp/scwrl_387397547.log Error: can't open any of /var/tmp/from_scwrl_387397547.pdb or /var/tmp/from_scwrl_387397547_b.pdb or /var/tmp/from_scwrl_387397547_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1408990970.pdb -s /var/tmp/to_scwrl_1408990970.seq -o /var/tmp/from_scwrl_1408990970.pdb > /var/tmp/scwrl_1408990970.log Error: can't open any of /var/tmp/from_scwrl_1408990970.pdb or /var/tmp/from_scwrl_1408990970_b.pdb or /var/tmp/from_scwrl_1408990970_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1821619185.pdb -s /var/tmp/to_scwrl_1821619185.seq -o /var/tmp/from_scwrl_1821619185.pdb > /var/tmp/scwrl_1821619185.log Error: can't open any of /var/tmp/from_scwrl_1821619185.pdb or /var/tmp/from_scwrl_1821619185_b.pdb or /var/tmp/from_scwrl_1821619185_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2145589587.pdb -s /var/tmp/to_scwrl_2145589587.seq -o /var/tmp/from_scwrl_2145589587.pdb > /var/tmp/scwrl_2145589587.log Error: can't open any of /var/tmp/from_scwrl_2145589587.pdb or /var/tmp/from_scwrl_2145589587_b.pdb or /var/tmp/from_scwrl_2145589587_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_704907982.pdb -s /var/tmp/to_scwrl_704907982.seq -o /var/tmp/from_scwrl_704907982.pdb > /var/tmp/scwrl_704907982.log Error: can't open any of /var/tmp/from_scwrl_704907982.pdb or /var/tmp/from_scwrl_704907982_b.pdb or /var/tmp/from_scwrl_704907982_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1206183888.pdb -s /var/tmp/to_scwrl_1206183888.seq -o /var/tmp/from_scwrl_1206183888.pdb > /var/tmp/scwrl_1206183888.log Error: can't open any of /var/tmp/from_scwrl_1206183888.pdb or /var/tmp/from_scwrl_1206183888_b.pdb or /var/tmp/from_scwrl_1206183888_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_173888559.pdb -s /var/tmp/to_scwrl_173888559.seq -o /var/tmp/from_scwrl_173888559.pdb > /var/tmp/scwrl_173888559.log Error: can't open any of /var/tmp/from_scwrl_173888559.pdb or /var/tmp/from_scwrl_173888559_b.pdb or /var/tmp/from_scwrl_173888559_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_150355498.pdb -s /var/tmp/to_scwrl_150355498.seq -o /var/tmp/from_scwrl_150355498.pdb > /var/tmp/scwrl_150355498.log Error: can't open any of /var/tmp/from_scwrl_150355498.pdb or /var/tmp/from_scwrl_150355498_b.pdb or /var/tmp/from_scwrl_150355498_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_199034546.pdb -s /var/tmp/to_scwrl_199034546.seq -o /var/tmp/from_scwrl_199034546.pdb > /var/tmp/scwrl_199034546.log Error: can't open any of /var/tmp/from_scwrl_199034546.pdb or /var/tmp/from_scwrl_199034546_b.pdb or /var/tmp/from_scwrl_199034546_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1925238232.pdb -s /var/tmp/to_scwrl_1925238232.seq -o /var/tmp/from_scwrl_1925238232.pdb > /var/tmp/scwrl_1925238232.log Error: can't open any of /var/tmp/from_scwrl_1925238232.pdb or /var/tmp/from_scwrl_1925238232_b.pdb or /var/tmp/from_scwrl_1925238232_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_841931839.pdb -s /var/tmp/to_scwrl_841931839.seq -o /var/tmp/from_scwrl_841931839.pdb > /var/tmp/scwrl_841931839.log Error: can't open any of /var/tmp/from_scwrl_841931839.pdb or /var/tmp/from_scwrl_841931839_b.pdb or /var/tmp/from_scwrl_841931839_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1968459194.pdb -s /var/tmp/to_scwrl_1968459194.seq -o /var/tmp/from_scwrl_1968459194.pdb > /var/tmp/scwrl_1968459194.log Error: can't open any of /var/tmp/from_scwrl_1968459194.pdb or /var/tmp/from_scwrl_1968459194_b.pdb or /var/tmp/from_scwrl_1968459194_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_991586868.pdb -s /var/tmp/to_scwrl_991586868.seq -o /var/tmp/from_scwrl_991586868.pdb > /var/tmp/scwrl_991586868.log Error: can't open any of /var/tmp/from_scwrl_991586868.pdb or /var/tmp/from_scwrl_991586868_b.pdb or /var/tmp/from_scwrl_991586868_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1907266480.pdb -s /var/tmp/to_scwrl_1907266480.seq -o /var/tmp/from_scwrl_1907266480.pdb > /var/tmp/scwrl_1907266480.log Error: can't open any of /var/tmp/from_scwrl_1907266480.pdb or /var/tmp/from_scwrl_1907266480_b.pdb or /var/tmp/from_scwrl_1907266480_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1860818432.pdb -s /var/tmp/to_scwrl_1860818432.seq -o /var/tmp/from_scwrl_1860818432.pdb > /var/tmp/scwrl_1860818432.log Error: can't open any of /var/tmp/from_scwrl_1860818432.pdb or /var/tmp/from_scwrl_1860818432_b.pdb or /var/tmp/from_scwrl_1860818432_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_374914764.pdb -s /var/tmp/to_scwrl_374914764.seq -o /var/tmp/from_scwrl_374914764.pdb > /var/tmp/scwrl_374914764.log Error: can't open any of /var/tmp/from_scwrl_374914764.pdb or /var/tmp/from_scwrl_374914764_b.pdb or /var/tmp/from_scwrl_374914764_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1425883227.pdb -s /var/tmp/to_scwrl_1425883227.seq -o /var/tmp/from_scwrl_1425883227.pdb > /var/tmp/scwrl_1425883227.log Error: can't open any of /var/tmp/from_scwrl_1425883227.pdb or /var/tmp/from_scwrl_1425883227_b.pdb or /var/tmp/from_scwrl_1425883227_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1013583086.pdb -s /var/tmp/to_scwrl_1013583086.seq -o /var/tmp/from_scwrl_1013583086.pdb > /var/tmp/scwrl_1013583086.log Error: can't open any of /var/tmp/from_scwrl_1013583086.pdb or /var/tmp/from_scwrl_1013583086_b.pdb or /var/tmp/from_scwrl_1013583086_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1841008324.pdb -s /var/tmp/to_scwrl_1841008324.seq -o /var/tmp/from_scwrl_1841008324.pdb > /var/tmp/scwrl_1841008324.log Error: can't open any of /var/tmp/from_scwrl_1841008324.pdb or /var/tmp/from_scwrl_1841008324_b.pdb or /var/tmp/from_scwrl_1841008324_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1140229382.pdb -s /var/tmp/to_scwrl_1140229382.seq -o /var/tmp/from_scwrl_1140229382.pdb > /var/tmp/scwrl_1140229382.log Error: can't open any of /var/tmp/from_scwrl_1140229382.pdb or /var/tmp/from_scwrl_1140229382_b.pdb or /var/tmp/from_scwrl_1140229382_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_66228185.pdb -s /var/tmp/to_scwrl_66228185.seq -o /var/tmp/from_scwrl_66228185.pdb > /var/tmp/scwrl_66228185.log Error: can't open any of /var/tmp/from_scwrl_66228185.pdb or /var/tmp/from_scwrl_66228185_b.pdb or /var/tmp/from_scwrl_66228185_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1732034262.pdb -s /var/tmp/to_scwrl_1732034262.seq -o /var/tmp/from_scwrl_1732034262.pdb > /var/tmp/scwrl_1732034262.log Error: can't open any of /var/tmp/from_scwrl_1732034262.pdb or /var/tmp/from_scwrl_1732034262_b.pdb or /var/tmp/from_scwrl_1732034262_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_452273302.pdb -s /var/tmp/to_scwrl_452273302.seq -o /var/tmp/from_scwrl_452273302.pdb > /var/tmp/scwrl_452273302.log Error: can't open any of /var/tmp/from_scwrl_452273302.pdb or /var/tmp/from_scwrl_452273302_b.pdb or /var/tmp/from_scwrl_452273302_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2095680190.pdb -s /var/tmp/to_scwrl_2095680190.seq -o /var/tmp/from_scwrl_2095680190.pdb > /var/tmp/scwrl_2095680190.log Error: can't open any of /var/tmp/from_scwrl_2095680190.pdb or /var/tmp/from_scwrl_2095680190_b.pdb or /var/tmp/from_scwrl_2095680190_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1721924486.pdb -s /var/tmp/to_scwrl_1721924486.seq -o /var/tmp/from_scwrl_1721924486.pdb > /var/tmp/scwrl_1721924486.log Error: can't open any of /var/tmp/from_scwrl_1721924486.pdb or /var/tmp/from_scwrl_1721924486_b.pdb or /var/tmp/from_scwrl_1721924486_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1950467026.pdb -s /var/tmp/to_scwrl_1950467026.seq -o /var/tmp/from_scwrl_1950467026.pdb > /var/tmp/scwrl_1950467026.log Error: can't open any of /var/tmp/from_scwrl_1950467026.pdb or /var/tmp/from_scwrl_1950467026_b.pdb or /var/tmp/from_scwrl_1950467026_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2039993413.pdb -s /var/tmp/to_scwrl_2039993413.seq -o /var/tmp/from_scwrl_2039993413.pdb > /var/tmp/scwrl_2039993413.log Error: can't open any of /var/tmp/from_scwrl_2039993413.pdb or /var/tmp/from_scwrl_2039993413_b.pdb or /var/tmp/from_scwrl_2039993413_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2032948105.pdb -s /var/tmp/to_scwrl_2032948105.seq -o /var/tmp/from_scwrl_2032948105.pdb > /var/tmp/scwrl_2032948105.log Error: can't open any of /var/tmp/from_scwrl_2032948105.pdb or /var/tmp/from_scwrl_2032948105_b.pdb or /var/tmp/from_scwrl_2032948105_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1754227553.pdb -s /var/tmp/to_scwrl_1754227553.seq -o /var/tmp/from_scwrl_1754227553.pdb > /var/tmp/scwrl_1754227553.log Error: can't open any of /var/tmp/from_scwrl_1754227553.pdb or /var/tmp/from_scwrl_1754227553_b.pdb or /var/tmp/from_scwrl_1754227553_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_927685693.pdb -s /var/tmp/to_scwrl_927685693.seq -o /var/tmp/from_scwrl_927685693.pdb > /var/tmp/scwrl_927685693.log Error: can't open any of /var/tmp/from_scwrl_927685693.pdb or /var/tmp/from_scwrl_927685693_b.pdb or /var/tmp/from_scwrl_927685693_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1738135339.pdb -s /var/tmp/to_scwrl_1738135339.seq -o /var/tmp/from_scwrl_1738135339.pdb > /var/tmp/scwrl_1738135339.log Error: can't open any of /var/tmp/from_scwrl_1738135339.pdb or /var/tmp/from_scwrl_1738135339_b.pdb or /var/tmp/from_scwrl_1738135339_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2141625100.pdb -s /var/tmp/to_scwrl_2141625100.seq -o /var/tmp/from_scwrl_2141625100.pdb > /var/tmp/scwrl_2141625100.log Error: can't open any of /var/tmp/from_scwrl_2141625100.pdb or /var/tmp/from_scwrl_2141625100_b.pdb or /var/tmp/from_scwrl_2141625100_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_189193017.pdb -s /var/tmp/to_scwrl_189193017.seq -o /var/tmp/from_scwrl_189193017.pdb > /var/tmp/scwrl_189193017.log Error: can't open any of /var/tmp/from_scwrl_189193017.pdb or /var/tmp/from_scwrl_189193017_b.pdb or /var/tmp/from_scwrl_189193017_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1412270877.pdb -s /var/tmp/to_scwrl_1412270877.seq -o /var/tmp/from_scwrl_1412270877.pdb > /var/tmp/scwrl_1412270877.log Error: can't open any of /var/tmp/from_scwrl_1412270877.pdb or /var/tmp/from_scwrl_1412270877_b.pdb or /var/tmp/from_scwrl_1412270877_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2139731040.pdb -s /var/tmp/to_scwrl_2139731040.seq -o /var/tmp/from_scwrl_2139731040.pdb > /var/tmp/scwrl_2139731040.log Error: can't open any of /var/tmp/from_scwrl_2139731040.pdb or /var/tmp/from_scwrl_2139731040_b.pdb or /var/tmp/from_scwrl_2139731040_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_894100999.pdb -s /var/tmp/to_scwrl_894100999.seq -o /var/tmp/from_scwrl_894100999.pdb > /var/tmp/scwrl_894100999.log Error: can't open any of /var/tmp/from_scwrl_894100999.pdb or /var/tmp/from_scwrl_894100999_b.pdb or /var/tmp/from_scwrl_894100999_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_470971120.pdb -s /var/tmp/to_scwrl_470971120.seq -o /var/tmp/from_scwrl_470971120.pdb > /var/tmp/scwrl_470971120.log Error: can't open any of /var/tmp/from_scwrl_470971120.pdb or /var/tmp/from_scwrl_470971120_b.pdb or /var/tmp/from_scwrl_470971120_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_166135953.pdb -s /var/tmp/to_scwrl_166135953.seq -o /var/tmp/from_scwrl_166135953.pdb > /var/tmp/scwrl_166135953.log Error: can't open any of /var/tmp/from_scwrl_166135953.pdb or /var/tmp/from_scwrl_166135953_b.pdb or /var/tmp/from_scwrl_166135953_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1044456497.pdb -s /var/tmp/to_scwrl_1044456497.seq -o /var/tmp/from_scwrl_1044456497.pdb > /var/tmp/scwrl_1044456497.log Error: can't open any of /var/tmp/from_scwrl_1044456497.pdb or /var/tmp/from_scwrl_1044456497_b.pdb or /var/tmp/from_scwrl_1044456497_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_670005666.pdb -s /var/tmp/to_scwrl_670005666.seq -o /var/tmp/from_scwrl_670005666.pdb > /var/tmp/scwrl_670005666.log Error: can't open any of /var/tmp/from_scwrl_670005666.pdb or /var/tmp/from_scwrl_670005666_b.pdb or /var/tmp/from_scwrl_670005666_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2091374185.pdb -s /var/tmp/to_scwrl_2091374185.seq -o /var/tmp/from_scwrl_2091374185.pdb > /var/tmp/scwrl_2091374185.log Error: can't open any of /var/tmp/from_scwrl_2091374185.pdb or /var/tmp/from_scwrl_2091374185_b.pdb or /var/tmp/from_scwrl_2091374185_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1886388336.pdb -s /var/tmp/to_scwrl_1886388336.seq -o /var/tmp/from_scwrl_1886388336.pdb > /var/tmp/scwrl_1886388336.log Error: can't open any of /var/tmp/from_scwrl_1886388336.pdb or /var/tmp/from_scwrl_1886388336_b.pdb or /var/tmp/from_scwrl_1886388336_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_490981213.pdb -s /var/tmp/to_scwrl_490981213.seq -o /var/tmp/from_scwrl_490981213.pdb > /var/tmp/scwrl_490981213.log Error: can't open any of /var/tmp/from_scwrl_490981213.pdb or /var/tmp/from_scwrl_490981213_b.pdb or /var/tmp/from_scwrl_490981213_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_935477406.pdb -s /var/tmp/to_scwrl_935477406.seq -o /var/tmp/from_scwrl_935477406.pdb > /var/tmp/scwrl_935477406.log Error: can't open any of /var/tmp/from_scwrl_935477406.pdb or /var/tmp/from_scwrl_935477406_b.pdb or /var/tmp/from_scwrl_935477406_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1646171169.pdb -s /var/tmp/to_scwrl_1646171169.seq -o /var/tmp/from_scwrl_1646171169.pdb > /var/tmp/scwrl_1646171169.log Error: can't open any of /var/tmp/from_scwrl_1646171169.pdb or /var/tmp/from_scwrl_1646171169_b.pdb or /var/tmp/from_scwrl_1646171169_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_204315998.pdb -s /var/tmp/to_scwrl_204315998.seq -o /var/tmp/from_scwrl_204315998.pdb > /var/tmp/scwrl_204315998.log Error: can't open any of /var/tmp/from_scwrl_204315998.pdb or /var/tmp/from_scwrl_204315998_b.pdb or /var/tmp/from_scwrl_204315998_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1310392170.pdb -s /var/tmp/to_scwrl_1310392170.seq -o /var/tmp/from_scwrl_1310392170.pdb > /var/tmp/scwrl_1310392170.log Error: can't open any of /var/tmp/from_scwrl_1310392170.pdb or /var/tmp/from_scwrl_1310392170_b.pdb or /var/tmp/from_scwrl_1310392170_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_924570750.pdb -s /var/tmp/to_scwrl_924570750.seq -o /var/tmp/from_scwrl_924570750.pdb > /var/tmp/scwrl_924570750.log Error: can't open any of /var/tmp/from_scwrl_924570750.pdb or /var/tmp/from_scwrl_924570750_b.pdb or /var/tmp/from_scwrl_924570750_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1217899083.pdb -s /var/tmp/to_scwrl_1217899083.seq -o /var/tmp/from_scwrl_1217899083.pdb > /var/tmp/scwrl_1217899083.log Error: can't open any of /var/tmp/from_scwrl_1217899083.pdb or /var/tmp/from_scwrl_1217899083_b.pdb or /var/tmp/from_scwrl_1217899083_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1003916848.pdb -s /var/tmp/to_scwrl_1003916848.seq -o /var/tmp/from_scwrl_1003916848.pdb > /var/tmp/scwrl_1003916848.log Error: can't open any of /var/tmp/from_scwrl_1003916848.pdb or /var/tmp/from_scwrl_1003916848_b.pdb or /var/tmp/from_scwrl_1003916848_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2064800133.pdb -s /var/tmp/to_scwrl_2064800133.seq -o /var/tmp/from_scwrl_2064800133.pdb > /var/tmp/scwrl_2064800133.log Error: can't open any of /var/tmp/from_scwrl_2064800133.pdb or /var/tmp/from_scwrl_2064800133_b.pdb or /var/tmp/from_scwrl_2064800133_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1284127268.pdb -s /var/tmp/to_scwrl_1284127268.seq -o /var/tmp/from_scwrl_1284127268.pdb > /var/tmp/scwrl_1284127268.log Error: can't open any of /var/tmp/from_scwrl_1284127268.pdb or /var/tmp/from_scwrl_1284127268_b.pdb or /var/tmp/from_scwrl_1284127268_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_588467463.pdb -s /var/tmp/to_scwrl_588467463.seq -o /var/tmp/from_scwrl_588467463.pdb > /var/tmp/scwrl_588467463.log Error: can't open any of /var/tmp/from_scwrl_588467463.pdb or /var/tmp/from_scwrl_588467463_b.pdb or /var/tmp/from_scwrl_588467463_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_369589788.pdb -s /var/tmp/to_scwrl_369589788.seq -o /var/tmp/from_scwrl_369589788.pdb > /var/tmp/scwrl_369589788.log Error: can't open any of /var/tmp/from_scwrl_369589788.pdb or /var/tmp/from_scwrl_369589788_b.pdb or /var/tmp/from_scwrl_369589788_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1232323811.pdb -s /var/tmp/to_scwrl_1232323811.seq -o /var/tmp/from_scwrl_1232323811.pdb > /var/tmp/scwrl_1232323811.log Error: can't open any of /var/tmp/from_scwrl_1232323811.pdb or /var/tmp/from_scwrl_1232323811_b.pdb or /var/tmp/from_scwrl_1232323811_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_162908303.pdb -s /var/tmp/to_scwrl_162908303.seq -o /var/tmp/from_scwrl_162908303.pdb > /var/tmp/scwrl_162908303.log Error: can't open any of /var/tmp/from_scwrl_162908303.pdb or /var/tmp/from_scwrl_162908303_b.pdb or /var/tmp/from_scwrl_162908303_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_172573167.pdb -s /var/tmp/to_scwrl_172573167.seq -o /var/tmp/from_scwrl_172573167.pdb > /var/tmp/scwrl_172573167.log Error: can't open any of /var/tmp/from_scwrl_172573167.pdb or /var/tmp/from_scwrl_172573167_b.pdb or /var/tmp/from_scwrl_172573167_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1124833578.pdb -s /var/tmp/to_scwrl_1124833578.seq -o /var/tmp/from_scwrl_1124833578.pdb > /var/tmp/scwrl_1124833578.log Error: can't open any of /var/tmp/from_scwrl_1124833578.pdb or /var/tmp/from_scwrl_1124833578_b.pdb or /var/tmp/from_scwrl_1124833578_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_48372761.pdb -s /var/tmp/to_scwrl_48372761.seq -o /var/tmp/from_scwrl_48372761.pdb > /var/tmp/scwrl_48372761.log Error: can't open any of /var/tmp/from_scwrl_48372761.pdb or /var/tmp/from_scwrl_48372761_b.pdb or /var/tmp/from_scwrl_48372761_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1926800720.pdb -s /var/tmp/to_scwrl_1926800720.seq -o /var/tmp/from_scwrl_1926800720.pdb > /var/tmp/scwrl_1926800720.log Error: can't open any of /var/tmp/from_scwrl_1926800720.pdb or /var/tmp/from_scwrl_1926800720_b.pdb or /var/tmp/from_scwrl_1926800720_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2052519271.pdb -s /var/tmp/to_scwrl_2052519271.seq -o /var/tmp/from_scwrl_2052519271.pdb > /var/tmp/scwrl_2052519271.log Error: can't open any of /var/tmp/from_scwrl_2052519271.pdb or /var/tmp/from_scwrl_2052519271_b.pdb or /var/tmp/from_scwrl_2052519271_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1786508100.pdb -s /var/tmp/to_scwrl_1786508100.seq -o /var/tmp/from_scwrl_1786508100.pdb > /var/tmp/scwrl_1786508100.log Error: can't open any of /var/tmp/from_scwrl_1786508100.pdb or /var/tmp/from_scwrl_1786508100_b.pdb or /var/tmp/from_scwrl_1786508100_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1920942173.pdb -s /var/tmp/to_scwrl_1920942173.seq -o /var/tmp/from_scwrl_1920942173.pdb > /var/tmp/scwrl_1920942173.log Error: can't open any of /var/tmp/from_scwrl_1920942173.pdb or /var/tmp/from_scwrl_1920942173_b.pdb or /var/tmp/from_scwrl_1920942173_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_94228641.pdb -s /var/tmp/to_scwrl_94228641.seq -o /var/tmp/from_scwrl_94228641.pdb > /var/tmp/scwrl_94228641.log Error: can't open any of /var/tmp/from_scwrl_94228641.pdb or /var/tmp/from_scwrl_94228641_b.pdb or /var/tmp/from_scwrl_94228641_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1051295331.pdb -s /var/tmp/to_scwrl_1051295331.seq -o /var/tmp/from_scwrl_1051295331.pdb > /var/tmp/scwrl_1051295331.log Error: can't open any of /var/tmp/from_scwrl_1051295331.pdb or /var/tmp/from_scwrl_1051295331_b.pdb or /var/tmp/from_scwrl_1051295331_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1913189567.pdb -s /var/tmp/to_scwrl_1913189567.seq -o /var/tmp/from_scwrl_1913189567.pdb > /var/tmp/scwrl_1913189567.log Error: can't open any of /var/tmp/from_scwrl_1913189567.pdb or /var/tmp/from_scwrl_1913189567_b.pdb or /var/tmp/from_scwrl_1913189567_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_988329640.pdb -s /var/tmp/to_scwrl_988329640.seq -o /var/tmp/from_scwrl_988329640.pdb > /var/tmp/scwrl_988329640.log Error: can't open any of /var/tmp/from_scwrl_988329640.pdb or /var/tmp/from_scwrl_988329640_b.pdb or /var/tmp/from_scwrl_988329640_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1522266450.pdb -s /var/tmp/to_scwrl_1522266450.seq -o /var/tmp/from_scwrl_1522266450.pdb > /var/tmp/scwrl_1522266450.log Error: can't open any of /var/tmp/from_scwrl_1522266450.pdb or /var/tmp/from_scwrl_1522266450_b.pdb or /var/tmp/from_scwrl_1522266450_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2079325520.pdb -s /var/tmp/to_scwrl_2079325520.seq -o /var/tmp/from_scwrl_2079325520.pdb > /var/tmp/scwrl_2079325520.log Error: can't open any of /var/tmp/from_scwrl_2079325520.pdb or /var/tmp/from_scwrl_2079325520_b.pdb or /var/tmp/from_scwrl_2079325520_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2032786137.pdb -s /var/tmp/to_scwrl_2032786137.seq -o /var/tmp/from_scwrl_2032786137.pdb > /var/tmp/scwrl_2032786137.log Error: can't open any of /var/tmp/from_scwrl_2032786137.pdb or /var/tmp/from_scwrl_2032786137_b.pdb or /var/tmp/from_scwrl_2032786137_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_44788469.pdb -s /var/tmp/to_scwrl_44788469.seq -o /var/tmp/from_scwrl_44788469.pdb > /var/tmp/scwrl_44788469.log Error: can't open any of /var/tmp/from_scwrl_44788469.pdb or /var/tmp/from_scwrl_44788469_b.pdb or /var/tmp/from_scwrl_44788469_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2023216058.pdb -s /var/tmp/to_scwrl_2023216058.seq -o /var/tmp/from_scwrl_2023216058.pdb > /var/tmp/scwrl_2023216058.log Error: can't open any of /var/tmp/from_scwrl_2023216058.pdb or /var/tmp/from_scwrl_2023216058_b.pdb or /var/tmp/from_scwrl_2023216058_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1771690826.pdb -s /var/tmp/to_scwrl_1771690826.seq -o /var/tmp/from_scwrl_1771690826.pdb > /var/tmp/scwrl_1771690826.log Error: can't open any of /var/tmp/from_scwrl_1771690826.pdb or /var/tmp/from_scwrl_1771690826_b.pdb or /var/tmp/from_scwrl_1771690826_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_535769682.pdb -s /var/tmp/to_scwrl_535769682.seq -o /var/tmp/from_scwrl_535769682.pdb > /var/tmp/scwrl_535769682.log Error: can't open any of /var/tmp/from_scwrl_535769682.pdb or /var/tmp/from_scwrl_535769682_b.pdb or /var/tmp/from_scwrl_535769682_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_811209817.pdb -s /var/tmp/to_scwrl_811209817.seq -o /var/tmp/from_scwrl_811209817.pdb > /var/tmp/scwrl_811209817.log Error: can't open any of /var/tmp/from_scwrl_811209817.pdb or /var/tmp/from_scwrl_811209817_b.pdb or /var/tmp/from_scwrl_811209817_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1270378348.pdb -s /var/tmp/to_scwrl_1270378348.seq -o /var/tmp/from_scwrl_1270378348.pdb > /var/tmp/scwrl_1270378348.log Error: can't open any of /var/tmp/from_scwrl_1270378348.pdb or /var/tmp/from_scwrl_1270378348_b.pdb or /var/tmp/from_scwrl_1270378348_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_740085680.pdb -s /var/tmp/to_scwrl_740085680.seq -o /var/tmp/from_scwrl_740085680.pdb > /var/tmp/scwrl_740085680.log Error: can't open any of /var/tmp/from_scwrl_740085680.pdb or /var/tmp/from_scwrl_740085680_b.pdb or /var/tmp/from_scwrl_740085680_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2121601987.pdb -s /var/tmp/to_scwrl_2121601987.seq -o /var/tmp/from_scwrl_2121601987.pdb > /var/tmp/scwrl_2121601987.log Error: can't open any of /var/tmp/from_scwrl_2121601987.pdb or /var/tmp/from_scwrl_2121601987_b.pdb or /var/tmp/from_scwrl_2121601987_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_47465451.pdb -s /var/tmp/to_scwrl_47465451.seq -o /var/tmp/from_scwrl_47465451.pdb > /var/tmp/scwrl_47465451.log Error: can't open any of /var/tmp/from_scwrl_47465451.pdb or /var/tmp/from_scwrl_47465451_b.pdb or /var/tmp/from_scwrl_47465451_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1957984763.pdb -s /var/tmp/to_scwrl_1957984763.seq -o /var/tmp/from_scwrl_1957984763.pdb > /var/tmp/scwrl_1957984763.log Error: can't open any of /var/tmp/from_scwrl_1957984763.pdb or /var/tmp/from_scwrl_1957984763_b.pdb or /var/tmp/from_scwrl_1957984763_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_978035188.pdb -s /var/tmp/to_scwrl_978035188.seq -o /var/tmp/from_scwrl_978035188.pdb > /var/tmp/scwrl_978035188.log Error: can't open any of /var/tmp/from_scwrl_978035188.pdb or /var/tmp/from_scwrl_978035188_b.pdb or /var/tmp/from_scwrl_978035188_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2112265584.pdb -s /var/tmp/to_scwrl_2112265584.seq -o /var/tmp/from_scwrl_2112265584.pdb > /var/tmp/scwrl_2112265584.log Error: can't open any of /var/tmp/from_scwrl_2112265584.pdb or /var/tmp/from_scwrl_2112265584_b.pdb or /var/tmp/from_scwrl_2112265584_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1094628385.pdb -s /var/tmp/to_scwrl_1094628385.seq -o /var/tmp/from_scwrl_1094628385.pdb > /var/tmp/scwrl_1094628385.log Error: can't open any of /var/tmp/from_scwrl_1094628385.pdb or /var/tmp/from_scwrl_1094628385_b.pdb or /var/tmp/from_scwrl_1094628385_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1566502651.pdb -s /var/tmp/to_scwrl_1566502651.seq -o /var/tmp/from_scwrl_1566502651.pdb > /var/tmp/scwrl_1566502651.log Error: can't open any of /var/tmp/from_scwrl_1566502651.pdb or /var/tmp/from_scwrl_1566502651_b.pdb or /var/tmp/from_scwrl_1566502651_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_334371725.pdb -s /var/tmp/to_scwrl_334371725.seq -o /var/tmp/from_scwrl_334371725.pdb > /var/tmp/scwrl_334371725.log Error: can't open any of /var/tmp/from_scwrl_334371725.pdb or /var/tmp/from_scwrl_334371725_b.pdb or /var/tmp/from_scwrl_334371725_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_179468550.pdb -s /var/tmp/to_scwrl_179468550.seq -o /var/tmp/from_scwrl_179468550.pdb > /var/tmp/scwrl_179468550.log Error: can't open any of /var/tmp/from_scwrl_179468550.pdb or /var/tmp/from_scwrl_179468550_b.pdb or /var/tmp/from_scwrl_179468550_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1729410954.pdb -s /var/tmp/to_scwrl_1729410954.seq -o /var/tmp/from_scwrl_1729410954.pdb > /var/tmp/scwrl_1729410954.log Error: can't open any of /var/tmp/from_scwrl_1729410954.pdb or /var/tmp/from_scwrl_1729410954_b.pdb or /var/tmp/from_scwrl_1729410954_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_506944893.pdb -s /var/tmp/to_scwrl_506944893.seq -o /var/tmp/from_scwrl_506944893.pdb > /var/tmp/scwrl_506944893.log Error: can't open any of /var/tmp/from_scwrl_506944893.pdb or /var/tmp/from_scwrl_506944893_b.pdb or /var/tmp/from_scwrl_506944893_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1304302128.pdb -s /var/tmp/to_scwrl_1304302128.seq -o /var/tmp/from_scwrl_1304302128.pdb > /var/tmp/scwrl_1304302128.log Error: can't open any of /var/tmp/from_scwrl_1304302128.pdb or /var/tmp/from_scwrl_1304302128_b.pdb or /var/tmp/from_scwrl_1304302128_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1777783715.pdb -s /var/tmp/to_scwrl_1777783715.seq -o /var/tmp/from_scwrl_1777783715.pdb > /var/tmp/scwrl_1777783715.log Error: can't open any of /var/tmp/from_scwrl_1777783715.pdb or /var/tmp/from_scwrl_1777783715_b.pdb or /var/tmp/from_scwrl_1777783715_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_286261966.pdb -s /var/tmp/to_scwrl_286261966.seq -o /var/tmp/from_scwrl_286261966.pdb > /var/tmp/scwrl_286261966.log Error: can't open any of /var/tmp/from_scwrl_286261966.pdb or /var/tmp/from_scwrl_286261966_b.pdb or /var/tmp/from_scwrl_286261966_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1209337753.pdb -s /var/tmp/to_scwrl_1209337753.seq -o /var/tmp/from_scwrl_1209337753.pdb > /var/tmp/scwrl_1209337753.log Error: can't open any of /var/tmp/from_scwrl_1209337753.pdb or /var/tmp/from_scwrl_1209337753_b.pdb or /var/tmp/from_scwrl_1209337753_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1416808168.pdb -s /var/tmp/to_scwrl_1416808168.seq -o /var/tmp/from_scwrl_1416808168.pdb > /var/tmp/scwrl_1416808168.log Error: can't open any of /var/tmp/from_scwrl_1416808168.pdb or /var/tmp/from_scwrl_1416808168_b.pdb or /var/tmp/from_scwrl_1416808168_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_59720493.pdb -s /var/tmp/to_scwrl_59720493.seq -o /var/tmp/from_scwrl_59720493.pdb > /var/tmp/scwrl_59720493.log Error: can't open any of /var/tmp/from_scwrl_59720493.pdb or /var/tmp/from_scwrl_59720493_b.pdb or /var/tmp/from_scwrl_59720493_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1303566394.pdb -s /var/tmp/to_scwrl_1303566394.seq -o /var/tmp/from_scwrl_1303566394.pdb > /var/tmp/scwrl_1303566394.log Error: can't open any of /var/tmp/from_scwrl_1303566394.pdb or /var/tmp/from_scwrl_1303566394_b.pdb or /var/tmp/from_scwrl_1303566394_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_320619852.pdb -s /var/tmp/to_scwrl_320619852.seq -o /var/tmp/from_scwrl_320619852.pdb > /var/tmp/scwrl_320619852.log Error: can't open any of /var/tmp/from_scwrl_320619852.pdb or /var/tmp/from_scwrl_320619852_b.pdb or /var/tmp/from_scwrl_320619852_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1972910060.pdb -s /var/tmp/to_scwrl_1972910060.seq -o /var/tmp/from_scwrl_1972910060.pdb > /var/tmp/scwrl_1972910060.log Error: can't open any of /var/tmp/from_scwrl_1972910060.pdb or /var/tmp/from_scwrl_1972910060_b.pdb or /var/tmp/from_scwrl_1972910060_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_144412388.pdb -s /var/tmp/to_scwrl_144412388.seq -o /var/tmp/from_scwrl_144412388.pdb > /var/tmp/scwrl_144412388.log Error: can't open any of /var/tmp/from_scwrl_144412388.pdb or /var/tmp/from_scwrl_144412388_b.pdb or /var/tmp/from_scwrl_144412388_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1842886303.pdb -s /var/tmp/to_scwrl_1842886303.seq -o /var/tmp/from_scwrl_1842886303.pdb > /var/tmp/scwrl_1842886303.log Error: can't open any of /var/tmp/from_scwrl_1842886303.pdb or /var/tmp/from_scwrl_1842886303_b.pdb or /var/tmp/from_scwrl_1842886303_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1904751933.pdb -s /var/tmp/to_scwrl_1904751933.seq -o /var/tmp/from_scwrl_1904751933.pdb > /var/tmp/scwrl_1904751933.log Error: can't open any of /var/tmp/from_scwrl_1904751933.pdb or /var/tmp/from_scwrl_1904751933_b.pdb or /var/tmp/from_scwrl_1904751933_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_29714878.pdb -s /var/tmp/to_scwrl_29714878.seq -o /var/tmp/from_scwrl_29714878.pdb > /var/tmp/scwrl_29714878.log Error: can't open any of /var/tmp/from_scwrl_29714878.pdb or /var/tmp/from_scwrl_29714878_b.pdb or /var/tmp/from_scwrl_29714878_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1887674772.pdb -s /var/tmp/to_scwrl_1887674772.seq -o /var/tmp/from_scwrl_1887674772.pdb > /var/tmp/scwrl_1887674772.log Error: can't open any of /var/tmp/from_scwrl_1887674772.pdb or /var/tmp/from_scwrl_1887674772_b.pdb or /var/tmp/from_scwrl_1887674772_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1780484344.pdb -s /var/tmp/to_scwrl_1780484344.seq -o /var/tmp/from_scwrl_1780484344.pdb > /var/tmp/scwrl_1780484344.log Error: can't open any of /var/tmp/from_scwrl_1780484344.pdb or /var/tmp/from_scwrl_1780484344_b.pdb or /var/tmp/from_scwrl_1780484344_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1801405704.pdb -s /var/tmp/to_scwrl_1801405704.seq -o /var/tmp/from_scwrl_1801405704.pdb > /var/tmp/scwrl_1801405704.log Error: can't open any of /var/tmp/from_scwrl_1801405704.pdb or /var/tmp/from_scwrl_1801405704_b.pdb or /var/tmp/from_scwrl_1801405704_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_275960808.pdb -s /var/tmp/to_scwrl_275960808.seq -o /var/tmp/from_scwrl_275960808.pdb > /var/tmp/scwrl_275960808.log Error: can't open any of /var/tmp/from_scwrl_275960808.pdb or /var/tmp/from_scwrl_275960808_b.pdb or /var/tmp/from_scwrl_275960808_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_444210514.pdb -s /var/tmp/to_scwrl_444210514.seq -o /var/tmp/from_scwrl_444210514.pdb > /var/tmp/scwrl_444210514.log Error: can't open any of /var/tmp/from_scwrl_444210514.pdb or /var/tmp/from_scwrl_444210514_b.pdb or /var/tmp/from_scwrl_444210514_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_924300406.pdb -s /var/tmp/to_scwrl_924300406.seq -o /var/tmp/from_scwrl_924300406.pdb > /var/tmp/scwrl_924300406.log Error: can't open any of /var/tmp/from_scwrl_924300406.pdb or /var/tmp/from_scwrl_924300406_b.pdb or /var/tmp/from_scwrl_924300406_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1016046488.pdb -s /var/tmp/to_scwrl_1016046488.seq -o /var/tmp/from_scwrl_1016046488.pdb > /var/tmp/scwrl_1016046488.log Error: can't open any of /var/tmp/from_scwrl_1016046488.pdb or /var/tmp/from_scwrl_1016046488_b.pdb or /var/tmp/from_scwrl_1016046488_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_418328855.pdb -s /var/tmp/to_scwrl_418328855.seq -o /var/tmp/from_scwrl_418328855.pdb > /var/tmp/scwrl_418328855.log Error: can't open any of /var/tmp/from_scwrl_418328855.pdb or /var/tmp/from_scwrl_418328855_b.pdb or /var/tmp/from_scwrl_418328855_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_971765857.pdb -s /var/tmp/to_scwrl_971765857.seq -o /var/tmp/from_scwrl_971765857.pdb > /var/tmp/scwrl_971765857.log Error: can't open any of /var/tmp/from_scwrl_971765857.pdb or /var/tmp/from_scwrl_971765857_b.pdb or /var/tmp/from_scwrl_971765857_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_826547605.pdb -s /var/tmp/to_scwrl_826547605.seq -o /var/tmp/from_scwrl_826547605.pdb > /var/tmp/scwrl_826547605.log Error: can't open any of /var/tmp/from_scwrl_826547605.pdb or /var/tmp/from_scwrl_826547605_b.pdb or /var/tmp/from_scwrl_826547605_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1396364042.pdb -s /var/tmp/to_scwrl_1396364042.seq -o /var/tmp/from_scwrl_1396364042.pdb > /var/tmp/scwrl_1396364042.log Error: can't open any of /var/tmp/from_scwrl_1396364042.pdb or /var/tmp/from_scwrl_1396364042_b.pdb or /var/tmp/from_scwrl_1396364042_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_936547795.pdb -s /var/tmp/to_scwrl_936547795.seq -o /var/tmp/from_scwrl_936547795.pdb > /var/tmp/scwrl_936547795.log Error: can't open any of /var/tmp/from_scwrl_936547795.pdb or /var/tmp/from_scwrl_936547795_b.pdb or /var/tmp/from_scwrl_936547795_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1921175990.pdb -s /var/tmp/to_scwrl_1921175990.seq -o /var/tmp/from_scwrl_1921175990.pdb > /var/tmp/scwrl_1921175990.log Error: can't open any of /var/tmp/from_scwrl_1921175990.pdb or /var/tmp/from_scwrl_1921175990_b.pdb or /var/tmp/from_scwrl_1921175990_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_815383047.pdb -s /var/tmp/to_scwrl_815383047.seq -o /var/tmp/from_scwrl_815383047.pdb > /var/tmp/scwrl_815383047.log Error: can't open any of /var/tmp/from_scwrl_815383047.pdb or /var/tmp/from_scwrl_815383047_b.pdb or /var/tmp/from_scwrl_815383047_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1270919519.pdb -s /var/tmp/to_scwrl_1270919519.seq -o /var/tmp/from_scwrl_1270919519.pdb > /var/tmp/scwrl_1270919519.log Error: can't open any of /var/tmp/from_scwrl_1270919519.pdb or /var/tmp/from_scwrl_1270919519_b.pdb or /var/tmp/from_scwrl_1270919519_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2100644540.pdb -s /var/tmp/to_scwrl_2100644540.seq -o /var/tmp/from_scwrl_2100644540.pdb > /var/tmp/scwrl_2100644540.log Error: can't open any of /var/tmp/from_scwrl_2100644540.pdb or /var/tmp/from_scwrl_2100644540_b.pdb or /var/tmp/from_scwrl_2100644540_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_397310354.pdb -s /var/tmp/to_scwrl_397310354.seq -o /var/tmp/from_scwrl_397310354.pdb > /var/tmp/scwrl_397310354.log Error: can't open any of /var/tmp/from_scwrl_397310354.pdb or /var/tmp/from_scwrl_397310354_b.pdb or /var/tmp/from_scwrl_397310354_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1777864412.pdb -s /var/tmp/to_scwrl_1777864412.seq -o /var/tmp/from_scwrl_1777864412.pdb > /var/tmp/scwrl_1777864412.log Error: can't open any of /var/tmp/from_scwrl_1777864412.pdb or /var/tmp/from_scwrl_1777864412_b.pdb or /var/tmp/from_scwrl_1777864412_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1257463022.pdb -s /var/tmp/to_scwrl_1257463022.seq -o /var/tmp/from_scwrl_1257463022.pdb > /var/tmp/scwrl_1257463022.log Error: can't open any of /var/tmp/from_scwrl_1257463022.pdb or /var/tmp/from_scwrl_1257463022_b.pdb or /var/tmp/from_scwrl_1257463022_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_27610422.pdb -s /var/tmp/to_scwrl_27610422.seq -o /var/tmp/from_scwrl_27610422.pdb > /var/tmp/scwrl_27610422.log Error: can't open any of /var/tmp/from_scwrl_27610422.pdb or /var/tmp/from_scwrl_27610422_b.pdb or /var/tmp/from_scwrl_27610422_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2064126379.pdb -s /var/tmp/to_scwrl_2064126379.seq -o /var/tmp/from_scwrl_2064126379.pdb > /var/tmp/scwrl_2064126379.log Error: can't open any of /var/tmp/from_scwrl_2064126379.pdb or /var/tmp/from_scwrl_2064126379_b.pdb or /var/tmp/from_scwrl_2064126379_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_319317129.pdb -s /var/tmp/to_scwrl_319317129.seq -o /var/tmp/from_scwrl_319317129.pdb > /var/tmp/scwrl_319317129.log Error: can't open any of /var/tmp/from_scwrl_319317129.pdb or /var/tmp/from_scwrl_319317129_b.pdb or /var/tmp/from_scwrl_319317129_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1444418590.pdb -s /var/tmp/to_scwrl_1444418590.seq -o /var/tmp/from_scwrl_1444418590.pdb > /var/tmp/scwrl_1444418590.log Error: can't open any of /var/tmp/from_scwrl_1444418590.pdb or /var/tmp/from_scwrl_1444418590_b.pdb or /var/tmp/from_scwrl_1444418590_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_2123846872.pdb -s /var/tmp/to_scwrl_2123846872.seq -o /var/tmp/from_scwrl_2123846872.pdb > /var/tmp/scwrl_2123846872.log Error: can't open any of /var/tmp/from_scwrl_2123846872.pdb or /var/tmp/from_scwrl_2123846872_b.pdb or /var/tmp/from_scwrl_2123846872_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1622883523.pdb -s /var/tmp/to_scwrl_1622883523.seq -o /var/tmp/from_scwrl_1622883523.pdb > /var/tmp/scwrl_1622883523.log Error: can't open any of /var/tmp/from_scwrl_1622883523.pdb or /var/tmp/from_scwrl_1622883523_b.pdb or /var/tmp/from_scwrl_1622883523_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1765038443.pdb -s /var/tmp/to_scwrl_1765038443.seq -o /var/tmp/from_scwrl_1765038443.pdb > /var/tmp/scwrl_1765038443.log Error: can't open any of /var/tmp/from_scwrl_1765038443.pdb or /var/tmp/from_scwrl_1765038443_b.pdb or /var/tmp/from_scwrl_1765038443_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1949273285.pdb -s /var/tmp/to_scwrl_1949273285.seq -o /var/tmp/from_scwrl_1949273285.pdb > /var/tmp/scwrl_1949273285.log Error: can't open any of /var/tmp/from_scwrl_1949273285.pdb or /var/tmp/from_scwrl_1949273285_b.pdb or /var/tmp/from_scwrl_1949273285_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl -i /var/tmp/to_scwrl_1767295911.pdb -s /var/tmp/to_scwrl_1767295911.seq -o /var/tmp/from_scwrl_1767295911.pdb > /var/tmp/scwrl_1767295911.log Error: can't open any of /var/tmp/from_scwrl_1767295911.pdb or /var/tmp/from_scwrl_1767295911_b.pdb or /var/tmp/from_scwrl_1767295911_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 48.3237 sec, elapsed time= 57.1076 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 441.548 real_cost = 398.819 nFOLD_TS5-scwrl costs 14178.5 real_cost = 551.431 nFOLD_TS4-scwrl costs 7197 real_cost = 535.903 nFOLD_TS3-scwrl costs 10451.4 real_cost = 514.942 nFOLD_TS2-scwrl costs 8684.72 real_cost = 510.625 nFOLD_TS1-scwrl costs 12651.5 real_cost = 477.743 mGen-3D_TS1-scwrl costs 26688.1 real_cost = 556.431 keasar-server_TS5-scwrl costs 367.067 real_cost = 351.376 keasar-server_TS4-scwrl costs 332.408 real_cost = 366.578 keasar-server_TS3-scwrl costs 375.21 real_cost = 342.562 keasar-server_TS2-scwrl costs 406.134 real_cost = 381.198 keasar-server_TS1-scwrl costs 347.116 real_cost = 375.046 karypis.srv_TS5-scwrl costs 371.57 real_cost = 374.583 karypis.srv_TS4-scwrl costs 492.403 real_cost = 376.124 karypis.srv_TS3-scwrl costs 522.311 real_cost = 379.776 karypis.srv_TS2-scwrl costs 393.603 real_cost = 351.001 karypis.srv_TS1-scwrl costs 362.251 real_cost = 340.48 karypis.srv.4_TS1-scwrl costs 668.379 real_cost = 393.316 karypis.srv.2_TS5-scwrl costs 343.829 real_cost = 338.306 karypis.srv.2_TS4-scwrl costs 355.973 real_cost = 365.068 karypis.srv.2_TS3-scwrl costs 331.022 real_cost = 398.026 karypis.srv.2_TS2-scwrl costs 335.205 real_cost = 380.181 karypis.srv.2_TS1-scwrl costs 323.242 real_cost = 326.456 beautshotbase_TS1-scwrl costs 323.606 real_cost = 362.952 beautshot_TS1-scwrl costs 362.399 real_cost = 374.282 Zhang-Server_TS5-scwrl costs 325.617 real_cost = 330.164 Zhang-Server_TS4-scwrl costs 292.849 real_cost = 315.964 Zhang-Server_TS3-scwrl costs 322.913 real_cost = 336.225 Zhang-Server_TS2-scwrl costs 302.465 real_cost = 333.635 Zhang-Server_TS1-scwrl costs 305.49 real_cost = 319.928 UNI-EID_sfst_AL5-scwrl costs 31016.4 real_cost = 537.567 UNI-EID_sfst_AL4-scwrl costs 35879.1 real_cost = 539.761 UNI-EID_sfst_AL3-scwrl costs 101889 real_cost = 536.292 UNI-EID_sfst_AL2-scwrl costs 53337.6 real_cost = 521.348 UNI-EID_sfst_AL1-scwrl costs 36532 real_cost = 555.578 UNI-EID_expm_TS1-scwrl costs 11873.4 real_cost = 502.116 UNI-EID_bnmx_TS5-scwrl costs 2619.1 real_cost = 607.095 UNI-EID_bnmx_TS4-scwrl costs 2612.17 real_cost = 597.987 UNI-EID_bnmx_TS3-scwrl costs 2558.29 real_cost = 611.226 UNI-EID_bnmx_TS2-scwrl costs 2647.94 real_cost = 592.043 UNI-EID_bnmx_TS1-scwrl costs 2608.44 real_cost = 597.717 SPARKS2_TS5-scwrl costs 322.289 real_cost = 348.727 SPARKS2_TS4-scwrl costs 332.234 real_cost = 376.458 SPARKS2_TS3-scwrl costs 319.97 real_cost = 387.33 SPARKS2_TS2-scwrl costs 315.494 real_cost = 357.934 SPARKS2_TS1-scwrl costs 314.879 real_cost = 345.91 SP4_TS5-scwrl costs 313.503 real_cost = 332.909 SP4_TS4-scwrl costs 320.441 real_cost = 372.452 SP4_TS3-scwrl costs 313.321 real_cost = 338.511 SP4_TS2-scwrl costs 317.044 real_cost = 367.496 SP4_TS1-scwrl costs 302.778 real_cost = 359.321 SP3_TS5-scwrl costs 329.23 real_cost = 349.516 SP3_TS4-scwrl costs 310.176 real_cost = 349.138 SP3_TS3-scwrl costs 313.174 real_cost = 360.217 SP3_TS2-scwrl costs 324.343 real_cost = 365.931 SP3_TS1-scwrl costs 297.944 real_cost = 346.221 SAM_T06_server_TS5-scwrl costs 1279.34 real_cost = 563.856 SAM_T06_server_TS4-scwrl costs 957.311 real_cost = 504.905 SAM_T06_server_TS3-scwrl costs 1113.67 real_cost = 491.308 SAM_T06_server_TS2-scwrl costs 1169.71 real_cost = 512.421 SAM_T06_server_TS1-scwrl costs 267.574 real_cost = 384.843 SAM-T02_AL5-scwrl costs 6753.91 real_cost = 578.176 SAM-T02_AL4-scwrl costs 10173.5 real_cost = 663.714 SAM-T02_AL3-scwrl costs 4891.68 real_cost = 589.168 SAM-T02_AL2-scwrl costs 2898.18 real_cost = 583.791 SAM-T02_AL1-scwrl costs 6218.67 real_cost = 621.419 ROKKY_TS2-scwrl costs 12135.6 real_cost = 540.406 ROKKY_TS1-scwrl costs 13185.8 real_cost = 566.849 ROBETTA_TS5-scwrl costs 2.0504e+06 real_cost = 503.313 ROBETTA_TS4-scwrl costs 2.03024e+06 real_cost = 482.592 ROBETTA_TS3-scwrl costs 2.66135e+06 real_cost = 487.4 ROBETTA_TS2-scwrl costs 2.01291e+06 real_cost = 487.562 ROBETTA_TS1-scwrl costs 1.05328e+06 real_cost = 476.373 RAPTOR_TS5-scwrl costs 387.397 real_cost = 390.383 RAPTOR_TS4-scwrl costs 377.672 real_cost = 386.231 RAPTOR_TS3-scwrl costs 347.79 real_cost = 350.457 RAPTOR_TS2-scwrl costs 381.234 real_cost = 376.171 RAPTOR_TS1-scwrl costs 385.872 real_cost = 373.441 RAPTORESS_TS5-scwrl costs 301.068 real_cost = 333.465 RAPTORESS_TS4-scwrl costs 316.185 real_cost = 364.316 RAPTORESS_TS3-scwrl costs 382.717 real_cost = 412.216 RAPTORESS_TS2-scwrl costs 345.303 real_cost = 378.01 RAPTORESS_TS1-scwrl costs 323.155 real_cost = 409.78 RAPTOR-ACE_TS5-scwrl costs 324.844 real_cost = 329.675 RAPTOR-ACE_TS4-scwrl costs 316.34 real_cost = 351.801 RAPTOR-ACE_TS3-scwrl costs 310.176 real_cost = 349.138 RAPTOR-ACE_TS2-scwrl costs 312.482 real_cost = 341.346 RAPTOR-ACE_TS1-scwrl costs 322.145 real_cost = 357.571 Pmodeller6_TS5-scwrl costs 442.384 real_cost = 326.128 Pmodeller6_TS4-scwrl costs 416.085 real_cost = 336.193 Pmodeller6_TS3-scwrl costs 294.807 real_cost = 313.91 Pmodeller6_TS2-scwrl costs 312.069 real_cost = 344.12 Pmodeller6_TS1-scwrl costs 373.805 real_cost = 342.163 Phyre-2_TS5-scwrl costs 477.358 real_cost = 405.398 Phyre-2_TS4-scwrl costs 480.979 real_cost = 393.113 Phyre-2_TS3-scwrl costs 474.789 real_cost = 394.165 Phyre-2_TS2-scwrl costs 470.973 real_cost = 391.454 Phyre-2_TS1-scwrl costs 413.912 real_cost = 370.245 Phyre-1_TS1-scwrl costs 788.586 real_cost = 471.755 Pcons6_TS5-scwrl costs 312.069 real_cost = 344.12 Pcons6_TS4-scwrl costs 937.338 real_cost = 470.219 Pcons6_TS3-scwrl costs 1162.76 real_cost = 433.505 Pcons6_TS2-scwrl costs 309.961 real_cost = 347.51 Pcons6_TS1-scwrl costs 994.867 real_cost = 461.445 PROTINFO_TS5-scwrl costs 468.139 real_cost = 379.807 PROTINFO_TS4-scwrl costs 468.82 real_cost = 390.627 PROTINFO_TS3-scwrl costs 328.464 real_cost = 376.984 PROTINFO_TS2-scwrl costs 344.109 real_cost = 382.902 PROTINFO_TS1-scwrl costs 343.227 real_cost = 373.211 PROTINFO-AB_TS5-scwrl costs 301.767 real_cost = 355.939 PROTINFO-AB_TS4-scwrl costs 305.337 real_cost = 346.471 PROTINFO-AB_TS3-scwrl costs 309.134 real_cost = 348.383 PROTINFO-AB_TS2-scwrl costs 309.954 real_cost = 338.71 PROTINFO-AB_TS1-scwrl costs 303.279 real_cost = 342.216 POMYSL_TS5-scwrl costs 471.117 real_cost = 400.327 POMYSL_TS4-scwrl costs 409.056 real_cost = 384.636 POMYSL_TS3-scwrl costs 431.776 real_cost = 399.449 POMYSL_TS2-scwrl costs 438.862 real_cost = 423.924 POMYSL_TS1-scwrl costs 484.701 real_cost = 377.759 NN_PUT_lab_TS1-scwrl costs 329.519 real_cost = 357.393 MetaTasser_TS5-scwrl costs 498.431 real_cost = 355.898 MetaTasser_TS4-scwrl costs 583.875 real_cost = 342.696 MetaTasser_TS3-scwrl costs 621.283 real_cost = 341.659 MetaTasser_TS2-scwrl costs 584.43 real_cost = 346.429 MetaTasser_TS1-scwrl costs 498.365 real_cost = 341.323 Ma-OPUS-server_TS5-scwrl costs 452.87 real_cost = 382.332 Ma-OPUS-server_TS4-scwrl costs 376.346 real_cost = 370.353 Ma-OPUS-server_TS3-scwrl costs 334.772 real_cost = 388.51 Ma-OPUS-server_TS2-scwrl costs 330.418 real_cost = 392.038 Ma-OPUS-server_TS1-scwrl costs 338.99 real_cost = 400.442 MIG_FROST_FLEX_AL1-scwrl costs 449.713 real_cost = 383.978 LOOPP_TS4-scwrl costs 377.431 real_cost = 387.931 LOOPP_TS3-scwrl costs 393.572 real_cost = 368.79 LOOPP_TS2-scwrl costs 353.127 real_cost = 354.422 LOOPP_TS1-scwrl costs 329.519 real_cost = 357.393 Huber-Torda-Server_TS5-scwrl costs 4394.25 real_cost = 585.443 Huber-Torda-Server_TS4-scwrl costs 15770.8 real_cost = 546.875 Huber-Torda-Server_TS3-scwrl costs 9646.45 real_cost = 567.449 Huber-Torda-Server_TS2-scwrl costs 7804.83 real_cost = 586.078 Huber-Torda-Server_TS1-scwrl costs 6041.39 real_cost = 512.076 HHpred3_TS1-scwrl costs 331.242 real_cost = 364.103 HHpred2_TS1-scwrl costs 331.242 real_cost = 364.103 HHpred1_TS1-scwrl costs 331.242 real_cost = 364.103 Frankenstein_TS3-scwrl costs 1222.79 real_cost = 430.887 Frankenstein_TS2-scwrl costs 1222.79 real_cost = 430.887 Frankenstein_TS1-scwrl costs 1387.61 real_cost = 431.781 FUNCTION_TS5-scwrl costs 362.01 real_cost = 381.212 FUNCTION_TS4-scwrl costs 370.104 real_cost = 328.621 FUNCTION_TS3-scwrl costs 353.421 real_cost = 328.408 FUNCTION_TS2-scwrl costs 355.973 real_cost = 353.159 FUNCTION_TS1-scwrl costs 354.708 real_cost = 351.354 FUGUE_AL5-scwrl costs 110522 real_cost = 544.114 FUGUE_AL4-scwrl costs 108455 real_cost = 545.82 FUGUE_AL3-scwrl costs 7468.33 real_cost = 598.341 FUGUE_AL2-scwrl costs 4225.11 real_cost = 609.822 FUGUE_AL1-scwrl costs 57903.9 real_cost = 528.422 FUGMOD_TS5-scwrl costs 350.002 real_cost = 361.933 FUGMOD_TS4-scwrl costs 357.585 real_cost = 359.909 FUGMOD_TS3-scwrl costs 1413.79 real_cost = 538.338 FUGMOD_TS2-scwrl costs 1673.81 real_cost = 587.237 FUGMOD_TS1-scwrl costs 364.884 real_cost = 345.858 FPSOLVER-SERVER_TS1-scwrl costs 383.364 real_cost = 427.498 FORTE2_AL5-scwrl costs 23620.7 real_cost = 580.137 FORTE2_AL4-scwrl costs 15780.7 real_cost = 549.788 FORTE2_AL3-scwrl costs 43797.9 real_cost = 580.906 FORTE2_AL2-scwrl costs 203538 real_cost = 546.854 FORTE2_AL1-scwrl costs 52958.7 real_cost = 601.418 FORTE1_AL5-scwrl costs 23620.7 real_cost = 580.137 FORTE1_AL4-scwrl costs 15780.7 real_cost = 549.788 FORTE1_AL3-scwrl costs 43797.9 real_cost = 580.906 FORTE1_AL2-scwrl costs 203538 real_cost = 546.854 FORTE1_AL1-scwrl costs 52958.7 real_cost = 601.418 FOLDpro_TS5-scwrl costs 345.914 real_cost = 360.422 FOLDpro_TS4-scwrl costs 324.096 real_cost = 382.217 FOLDpro_TS3-scwrl costs 329.137 real_cost = 339.542 FOLDpro_TS2-scwrl costs 321.975 real_cost = 370.963 FOLDpro_TS1-scwrl costs 339.324 real_cost = 360.973 FAMS_TS5-scwrl costs 485.747 real_cost = 350.871 FAMS_TS4-scwrl costs 467.433 real_cost = 347.018 FAMS_TS3-scwrl costs 459.117 real_cost = 363.845 FAMS_TS2-scwrl costs 489.841 real_cost = 339.914 FAMS_TS1-scwrl costs 411.351 real_cost = 341.883 FAMSD_TS5-scwrl costs 344.641 real_cost = 303.973 FAMSD_TS4-scwrl costs 343.699 real_cost = 325.667 FAMSD_TS3-scwrl costs 317.28 real_cost = 317.866 FAMSD_TS2-scwrl costs 357.203 real_cost = 328.003 FAMSD_TS1-scwrl costs 351.997 real_cost = 323.409 Distill_TS5-scwrl costs 2698.95 real_cost = 595.413 Distill_TS4-scwrl costs 2698.98 real_cost = 589.698 Distill_TS3-scwrl costs 2702.31 real_cost = 588.751 Distill_TS2-scwrl costs 2698.26 real_cost = 598.158 Distill_TS1-scwrl costs 2702.9 real_cost = 593.56 CaspIta-FOX_TS5-scwrl costs 534.729 real_cost = 400.205 CaspIta-FOX_TS4-scwrl costs 815.266 real_cost = 410.378 CaspIta-FOX_TS3-scwrl costs 819.072 real_cost = 415.437 CaspIta-FOX_TS2-scwrl costs 395.294 real_cost = 347.207 CaspIta-FOX_TS1-scwrl costs 398.179 real_cost = 370.677 CIRCLE_TS5-scwrl costs 317.28 real_cost = 317.866 CIRCLE_TS4-scwrl costs 357.203 real_cost = 328.003 CIRCLE_TS3-scwrl costs 320.964 real_cost = 321.942 CIRCLE_TS2-scwrl costs 351.997 real_cost = 323.409 CIRCLE_TS1-scwrl costs 351.102 real_cost = 327.467 Bilab-ENABLE_TS5-scwrl costs 310.158 real_cost = 330.44 Bilab-ENABLE_TS4-scwrl costs 334.341 real_cost = 331.952 Bilab-ENABLE_TS3-scwrl costs 342.273 real_cost = 326.374 Bilab-ENABLE_TS2-scwrl costs 331.614 real_cost = 314.12 Bilab-ENABLE_TS1-scwrl costs 333.464 real_cost = 312.189 BayesHH_TS1-scwrl costs 369.837 real_cost = 356.432 ABIpro_TS5-scwrl costs 338.93 real_cost = 347.777 ABIpro_TS4-scwrl costs 339.094 real_cost = 353.941 ABIpro_TS3-scwrl costs 378.882 real_cost = 363.699 ABIpro_TS2-scwrl costs 379.427 real_cost = 353.638 ABIpro_TS1-scwrl costs 378.461 real_cost = 359.791 3Dpro_TS5-scwrl costs 343.923 real_cost = 378.226 3Dpro_TS4-scwrl costs 327.832 real_cost = 376.304 3Dpro_TS3-scwrl costs 382.65 real_cost = 411.445 3Dpro_TS2-scwrl costs 353.783 real_cost = 387.069 3Dpro_TS1-scwrl costs 326.562 real_cost = 368.325 3D-JIGSAW_TS5-scwrl costs 424.456 real_cost = 276.463 3D-JIGSAW_TS4-scwrl costs 353.022 real_cost = 353.26 3D-JIGSAW_TS3-scwrl costs 409.675 real_cost = 332.204 3D-JIGSAW_TS2-scwrl costs 391.92 real_cost = 357.46 3D-JIGSAW_TS1-scwrl costs 466.614 real_cost = 366.526 3D-JIGSAW_RECOM_TS5-scwrl costs 424.456 real_cost = 276.463 3D-JIGSAW_RECOM_TS4-scwrl costs 353.022 real_cost = 353.26 3D-JIGSAW_RECOM_TS3-scwrl costs 409.675 real_cost = 332.204 3D-JIGSAW_RECOM_TS2-scwrl costs 391.92 real_cost = 357.46 3D-JIGSAW_RECOM_TS1-scwrl costs 466.614 real_cost = 366.526 3D-JIGSAW_POPULUS_TS5-scwrl costs 452.324 real_cost = 361.48 3D-JIGSAW_POPULUS_TS4-scwrl costs 422.911 real_cost = 335.099 3D-JIGSAW_POPULUS_TS3-scwrl costs 321.393 real_cost = 323.634 3D-JIGSAW_POPULUS_TS2-scwrl costs 301.398 real_cost = 302.955 3D-JIGSAW_POPULUS_TS1-scwrl costs 419.761 real_cost = 336.712 short.pdb.gz costs 490.281 real_cost = 378.557 robetta-model5.pdb.gz costs 2.0504e+06 real_cost = 503.313 robetta-model4.pdb.gz costs 2.03024e+06 real_cost = 482.592 robetta-model3.pdb.gz costs 2.66135e+06 real_cost = 487.4 robetta-model2.pdb.gz costs 2.01291e+06 real_cost = 487.562 robetta-model1.pdb.gz costs 1.05328e+06 real_cost = 476.373 first-T0287.try1-opt2.repack-nonPC.pdb.gz costs 272.892 real_cost = 383.466 first-T0287.try1-opt2.pdb.gz costs 268.814 real_cost = 382.119 first-T0287.try1-opt2.gromacs0.pdb.gz costs 282.05 real_cost = 385.47 first-T0287.try1-opt1.pdb.gz costs 278.507 real_cost = 384.502 first-T0287.try1-opt1-scwrl.pdb.gz costs 283.621 real_cost = 384.245 T0287.try9-opt2.repack-nonPC.pdb.gz costs 292.67 real_cost = 387.29 T0287.try9-opt2.pdb.gz costs 291.297 real_cost = 384.817 T0287.try9-opt2.gromacs0.pdb.gz costs 313.813 real_cost = 385.618 T0287.try9-opt1.pdb.gz costs 300.908 real_cost = 386.965 T0287.try9-opt1-scwrl.pdb.gz costs 302.631 real_cost = 386.525 T0287.try8-opt2.repack-nonPC.pdb.gz costs 293.299 real_cost = 380.475 T0287.try8-opt2.pdb.gz costs 291.422 real_cost = 381.626 T0287.try8-opt2.gromacs0.pdb.gz costs 315.04 real_cost = 381.223 T0287.try8-opt1.pdb.gz costs 297.444 real_cost = 380.702 T0287.try8-opt1-scwrl.pdb.gz costs 298.663 real_cost = 379.702 T0287.try7-opt2.repack-nonPC.pdb.gz costs 292.496 real_cost = 382.668 T0287.try7-opt2.pdb.gz costs 290.629 real_cost = 383.843 T0287.try7-opt2.gromacs0.pdb.gz costs 318.723 real_cost = 383.53 T0287.try7-opt1.pdb.gz costs 300.731 real_cost = 383.797 T0287.try7-opt1-scwrl.pdb.gz costs 302.028 real_cost = 383.104 T0287.try6-opt2.repack-nonPC.pdb.gz costs 283.583 real_cost = 385.542 T0287.try6-opt2.pdb.gz costs 280.953 real_cost = 383.898 T0287.try6-opt2.gromacs0.pdb.gz costs 312.178 real_cost = 385.643 T0287.try6-opt1.pdb.gz costs 292.563 real_cost = 383.799 T0287.try6-opt1-scwrl.pdb.gz costs 293.349 real_cost = 383.628 T0287.try5-opt2.repack-nonPC.pdb.gz costs 263.978 real_cost = 382.117 T0287.try5-opt2.pdb.gz costs 263.959 real_cost = 382.37 T0287.try5-opt2.gromacs0.pdb.gz costs 285.183 real_cost = 383.201 T0287.try5-opt1.pdb.gz costs 279.269 real_cost = 382.533 T0287.try5-opt1-scwrl.pdb.gz costs 280.975 real_cost = 380.967 T0287.try4-opt2.repack-nonPC.pdb.gz costs 266.945 real_cost = 381.925 T0287.try4-opt2.pdb.gz costs 265.722 real_cost = 380.157 T0287.try4-opt2.gromacs0.pdb.gz costs 286.598 real_cost = 382.278 T0287.try4-opt1.pdb.gz costs 277.578 real_cost = 379.236 T0287.try4-opt1-scwrl.pdb.gz costs 282.519 real_cost = 379.248 T0287.try3-opt2.repack-nonPC.pdb.gz costs 270.777 real_cost = 378.481 T0287.try3-opt2.pdb.gz costs 267.589 real_cost = 378.372 T0287.try3-opt2.gromacs0.pdb.gz costs 282.523 real_cost = 377.234 T0287.try3-opt1.pdb.gz costs 276.71 real_cost = 377.059 T0287.try3-opt1-scwrl.pdb.gz costs 281.364 real_cost = 376.825 T0287.try24-opt2.repack-nonPC.pdb.gz costs 270.332 real_cost = 371.353 T0287.try24-opt2.pdb.gz costs 265.871 real_cost = 372.632 T0287.try24-opt2.gromacs0.pdb.gz costs 283.56 real_cost = 373.601 T0287.try24-opt1.pdb.gz costs 268.879 real_cost = 371.414 T0287.try24-opt1-scwrl.pdb.gz costs 278.524 real_cost = 370.165 T0287.try23-opt2.repack-nonPC.pdb.gz costs 261.811 real_cost = 338.555 T0287.try23-opt2.pdb.gz costs 256.679 real_cost = 338.02 T0287.try23-opt2.gromacs0.pdb.gz costs 271.134 real_cost = 333.965 T0287.try23-opt1.pdb.gz costs 259.775 real_cost = 336.996 T0287.try23-opt1-scwrl.pdb.gz costs 270.69 real_cost = 334.189 T0287.try22-opt2.repack-nonPC.pdb.gz costs 264.028 real_cost = 336.194 T0287.try22-opt2.pdb.gz costs 260.471 real_cost = 336.14 T0287.try22-opt2.gromacs0.pdb.gz costs 271.808 real_cost = 333.797 T0287.try22-opt1.pdb.gz costs 265.783 real_cost = 337.956 T0287.try22-opt1-scwrl.pdb.gz costs 271.79 real_cost = 336.621 T0287.try21-opt2.repack-nonPC.pdb.gz costs 277.325 real_cost = 388.21 T0287.try21-opt2.pdb.gz costs 275.928 real_cost = 385.985 T0287.try21-opt2.gromacs0.pdb.gz costs 311.985 real_cost = 387.261 T0287.try21-opt1.pdb.gz costs 284.528 real_cost = 385.673 T0287.try21-opt1-scwrl.pdb.gz costs 292.268 real_cost = 384.818 T0287.try20-opt2.repack-nonPC.pdb.gz costs 279.734 real_cost = 376.055 T0287.try20-opt2.pdb.gz costs 275.539 real_cost = 377.635 T0287.try20-opt2.gromacs0.pdb.gz costs 285.231 real_cost = 378.418 T0287.try20-opt1.pdb.gz costs 277.891 real_cost = 377.923 T0287.try20-opt1-scwrl.pdb.gz costs 282.974 real_cost = 378.87 T0287.try2-opt2.repack-nonPC.pdb.gz costs 256.087 real_cost = 319.673 T0287.try2-opt2.pdb.gz costs 253.821 real_cost = 318.793 T0287.try2-opt2.gromacs0.pdb.gz costs 258.72 real_cost = 318.231 T0287.try2-opt1.pdb.gz costs 259.685 real_cost = 316.651 T0287.try2-opt1-scwrl.pdb.gz costs 259.567 real_cost = 314.914 T0287.try19-opt2.repack-nonPC.pdb.gz costs 254.913 real_cost = 339.576 T0287.try19-opt2.pdb.gz costs 252.094 real_cost = 338.966 T0287.try19-opt2.gromacs0.pdb.gz costs 260.865 real_cost = 330.749 T0287.try19-opt1.pdb.gz costs 255.284 real_cost = 340.846 T0287.try19-opt1-scwrl.pdb.gz costs 258.96 real_cost = 340.636 T0287.try18-opt2.repack-nonPC.pdb.gz costs 271.419 real_cost = 369.287 T0287.try18-opt2.pdb.gz costs 268.51 real_cost = 370.522 T0287.try18-opt2.gromacs0.pdb.gz costs 285.424 real_cost = 369.57 T0287.try18-opt1.pdb.gz costs 270.428 real_cost = 370.131 T0287.try18-opt1-scwrl.pdb.gz costs 278.918 real_cost = 369.181 T0287.try17-opt2.repack-nonPC.pdb.gz costs 283.731 real_cost = 374.833 T0287.try17-opt2.pdb.gz costs 281.649 real_cost = 375.802 T0287.try17-opt2.gromacs0.pdb.gz costs 291.522 real_cost = 377.461 T0287.try17-opt1.pdb.gz costs 284.666 real_cost = 374.939 T0287.try17-opt1-scwrl.pdb.gz costs 287.661 real_cost = 377.015 T0287.try16-opt2.repack-nonPC.pdb.gz costs 281.902 real_cost = 376.812 T0287.try16-opt2.pdb.gz costs 279.756 real_cost = 377.525 T0287.try16-opt2.gromacs0.pdb.gz costs 289.081 real_cost = 377.666 T0287.try16-opt1.pdb.gz costs 283.869 real_cost = 376.18 T0287.try16-opt1-scwrl.pdb.gz costs 286.364 real_cost = 378.071 T0287.try15-opt2.repack-nonPC.pdb.gz costs 284.944 real_cost = 374.787 T0287.try15-opt2.pdb.gz costs 283.062 real_cost = 375.37 T0287.try15-opt2.gromacs0.pdb.gz costs 293.429 real_cost = 376.948 T0287.try15-opt1.pdb.gz costs 283.759 real_cost = 377.587 T0287.try15-opt1-scwrl.pdb.gz costs 288.487 real_cost = 377.821 T0287.try14-opt2.repack-nonPC.pdb.gz costs 285.259 real_cost = 374.519 T0287.try14-opt2.pdb.gz costs 284.591 real_cost = 376.847 T0287.try14-opt2.gromacs0.pdb.gz costs 295.95 real_cost = 377.227 T0287.try14-opt1.pdb.gz costs 292.449 real_cost = 378.708 T0287.try14-opt1-scwrl.pdb.gz costs 292.315 real_cost = 379.169 T0287.try13-opt2.repack-nonPC.pdb.gz costs 272.587 real_cost = 350.5 T0287.try13-opt2.pdb.gz costs 270.716 real_cost = 353.168 T0287.try13-opt2.gromacs0.pdb.gz costs 285.98 real_cost = 351.539 T0287.try13-opt1.pdb.gz costs 277.194 real_cost = 350.806 T0287.try13-opt1-scwrl.pdb.gz costs 277.902 real_cost = 348.523 T0287.try12-opt2.repack-nonPC.pdb.gz costs 258.266 real_cost = 338.633 T0287.try12-opt2.pdb.gz costs 268.908 real_cost = 335.603 T0287.try12-opt2.gromacs0.pdb.gz costs 265.095 real_cost = 330.387 T0287.try12-opt2-old.pdb.gz costs 258.863 real_cost = 339.464 T0287.try12-opt1.pdb.gz costs 276.874 real_cost = 334.681 T0287.try12-opt1-scwrl.pdb.gz costs 276.7 real_cost = 332.233 T0287.try12-opt1-scwrl-old.pdb.gz costs 269.008 real_cost = 334.266 T0287.try12-opt1-old.pdb.gz costs 268.761 real_cost = 335.289 T0287.try11-opt2.repack-nonPC.pdb.gz costs 272.448 real_cost = 369.328 T0287.try11-opt2.pdb.gz costs 270.147 real_cost = 369.771 T0287.try11-opt2.gromacs0.pdb.gz costs 284.842 real_cost = 367.52 T0287.try11-opt1.pdb.gz costs 277.83 real_cost = 372.894 T0287.try11-opt1-scwrl.pdb.gz costs 281.377 real_cost = 373.341 T0287.try10-opt2.repack-nonPC.pdb.gz costs 283.458 real_cost = 366.853 T0287.try10-opt2.pdb.gz costs 283.407 real_cost = 368.417 T0287.try10-opt2.gromacs0.pdb.gz costs 294.869 real_cost = 362.697 T0287.try10-opt1.pdb.gz costs 290.233 real_cost = 368.051 T0287.try10-opt1-scwrl.pdb.gz costs 293.705 real_cost = 367.95 T0287.try1-opt2.repack-nonPC.pdb.gz costs 265.534 real_cost = 377.104 T0287.try1-opt2.pdb.gz costs 263.386 real_cost = 378.507 T0287.try1-opt2.gromacs0.pdb.gz costs 276.351 real_cost = 379.235 T0287.try1-opt1.pdb.gz costs 273.539 real_cost = 380.364 T0287.try1-opt1-scwrl.pdb.gz costs 279.959 real_cost = 378.611 ../model5.ts-submitted costs 275.959 real_cost = 386.126 ../model4.ts-submitted costs 256.684 real_cost = 337.947 ../model3.ts-submitted costs 275.535 real_cost = 377.43 ../model2.ts-submitted costs 267.617 real_cost = 378.351 ../model1.ts-submitted costs 265.91 real_cost = 372.471 align5 costs 1187.79 real_cost = 493.725 align4 costs 1146.38 real_cost = 410.278 align3 costs 911.759 real_cost = 411.37 align2 costs 1465.2 real_cost = 557.616 align1 costs 1380.88 real_cost = 481.651 T0287.try1-opt2.pdb costs 263.386 real_cost = 378.507 model5-scwrl costs 275.959 real_cost = 386.126 model4-scwrl costs 256.684 real_cost = 337.947 model3-scwrl costs 275.535 real_cost = 377.43 model2-scwrl costs 267.617 real_cost = 378.351 model1-scwrl costs 265.91 real_cost = 372.506 T0287 costs 411.835 real_cost = -895 # command:CPU_time= 466.652 sec, elapsed time= 532.745 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty