/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0287.t06.str2 rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0287/ -e s/START_COL/1/ \ -e s/REAL_PDB/2g3vA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174990752 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 4.75628 sec, elapsed time= 4.82067 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 4.82127 sec, elapsed time= 4.89815 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0287 numbered 1 through 199 Created new target T0287 from T0287.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2g3vA expands to /projects/compbio/data/pdb/2g3v.pdb.gz 2g3vA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Read 161 residues and 1349 atoms. # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 6.77297 sec, elapsed time= 6.88419 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 193 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -17.7019 # GDT_score(maxd=8,maxw=2.9)= -15.9886 # GDT_score(maxd=8,maxw=3.2)= -15.3631 # GDT_score(maxd=8,maxw=3.5)= -14.8449 # GDT_score(maxd=10,maxw=3.8)= -16.8911 # GDT_score(maxd=10,maxw=4)= -16.5124 # GDT_score(maxd=10,maxw=4.2)= -16.1698 # GDT_score(maxd=12,maxw=4.3)= -18.1818 # GDT_score(maxd=12,maxw=4.5)= -17.7878 # GDT_score(maxd=12,maxw=4.7)= -17.3986 # GDT_score(maxd=14,maxw=5.2)= -18.4254 # GDT_score(maxd=14,maxw=5.5)= -17.8285 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.9870000e+03 rmsd (weighted)= 1.8435042e+01 (unweighted)= 7.8841117e+01 superimposing iter= 1 total_weight= 3.4373521e+03 rmsd (weighted)= 1.0974256e+01 (unweighted)= 7.8719040e+01 superimposing iter= 2 total_weight= 1.9611408e+03 rmsd (weighted)= 8.8771961e+00 (unweighted)= 7.8449625e+01 superimposing iter= 3 total_weight= 1.6041299e+03 rmsd (weighted)= 7.9925485e+00 (unweighted)= 7.8202184e+01 superimposing iter= 4 total_weight= 1.4745924e+03 rmsd (weighted)= 7.5367239e+00 (unweighted)= 7.8028126e+01 superimposing iter= 5 total_weight= 1.4065700e+03 rmsd (weighted)= 7.2931441e+00 (unweighted)= 7.7911096e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1526824092.pdb -s /var/tmp/to_scwrl_1526824092.seq -o /var/tmp/from_scwrl_1526824092.pdb > /var/tmp/scwrl_1526824092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526824092.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -16.9255 # GDT_score(maxd=8,maxw=2.9)= -15.0837 # GDT_score(maxd=8,maxw=3.2)= -14.6013 # GDT_score(maxd=8,maxw=3.5)= -14.2015 # GDT_score(maxd=10,maxw=3.8)= -15.9163 # GDT_score(maxd=10,maxw=4)= -15.6174 # GDT_score(maxd=10,maxw=4.2)= -15.3379 # GDT_score(maxd=12,maxw=4.3)= -17.3027 # GDT_score(maxd=12,maxw=4.5)= -16.9619 # GDT_score(maxd=12,maxw=4.7)= -16.631 # GDT_score(maxd=14,maxw=5.2)= -17.6037 # GDT_score(maxd=14,maxw=5.5)= -16.9921 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1749821052.pdb -s /var/tmp/to_scwrl_1749821052.seq -o /var/tmp/from_scwrl_1749821052.pdb > /var/tmp/scwrl_1749821052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749821052.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -13.8199 # GDT_score(maxd=8,maxw=2.9)= -12.0547 # GDT_score(maxd=8,maxw=3.2)= -11.7398 # GDT_score(maxd=8,maxw=3.5)= -11.4724 # GDT_score(maxd=10,maxw=3.8)= -13.0242 # GDT_score(maxd=10,maxw=4)= -12.7767 # GDT_score(maxd=10,maxw=4.2)= -12.5528 # GDT_score(maxd=12,maxw=4.3)= -14.192 # GDT_score(maxd=12,maxw=4.5)= -13.9201 # GDT_score(maxd=12,maxw=4.7)= -13.6531 # GDT_score(maxd=14,maxw=5.2)= -14.4824 # GDT_score(maxd=14,maxw=5.5)= -14.018 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1785612576.pdb -s /var/tmp/to_scwrl_1785612576.seq -o /var/tmp/from_scwrl_1785612576.pdb > /var/tmp/scwrl_1785612576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785612576.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -22.205 # GDT_score(maxd=8,maxw=2.9)= -19.9647 # GDT_score(maxd=8,maxw=3.2)= -19.0204 # GDT_score(maxd=8,maxw=3.5)= -18.1191 # GDT_score(maxd=10,maxw=3.8)= -20.5767 # GDT_score(maxd=10,maxw=4)= -19.9516 # GDT_score(maxd=10,maxw=4.2)= -19.3454 # GDT_score(maxd=12,maxw=4.3)= -21.8514 # GDT_score(maxd=12,maxw=4.5)= -21.191 # GDT_score(maxd=12,maxw=4.7)= -20.5682 # GDT_score(maxd=14,maxw=5.2)= -21.4427 # GDT_score(maxd=14,maxw=5.5)= -20.578 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1642906113.pdb -s /var/tmp/to_scwrl_1642906113.seq -o /var/tmp/from_scwrl_1642906113.pdb > /var/tmp/scwrl_1642906113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642906113.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -12.5776 # GDT_score(maxd=8,maxw=2.9)= -10.5437 # GDT_score(maxd=8,maxw=3.2)= -10.1376 # GDT_score(maxd=8,maxw=3.5)= -9.7647 # GDT_score(maxd=10,maxw=3.8)= -11.5935 # GDT_score(maxd=10,maxw=4)= -11.2933 # GDT_score(maxd=10,maxw=4.2)= -11.012 # GDT_score(maxd=12,maxw=4.3)= -12.8174 # GDT_score(maxd=12,maxw=4.5)= -12.4819 # GDT_score(maxd=12,maxw=4.7)= -12.1622 # GDT_score(maxd=14,maxw=5.2)= -13.2256 # GDT_score(maxd=14,maxw=5.5)= -12.752 # command:# request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1184065531.pdb -s /var/tmp/to_scwrl_1184065531.seq -o /var/tmp/from_scwrl_1184065531.pdb > /var/tmp/scwrl_1184065531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184065531.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0287.try1-opt2.pdb looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -16.4596 # GDT_score(maxd=8,maxw=2.9)= -14.6383 # GDT_score(maxd=8,maxw=3.2)= -14.1976 # GDT_score(maxd=8,maxw=3.5)= -13.8325 # GDT_score(maxd=10,maxw=3.8)= -15.4553 # GDT_score(maxd=10,maxw=4)= -15.1794 # GDT_score(maxd=10,maxw=4.2)= -14.9298 # GDT_score(maxd=12,maxw=4.3)= -16.7797 # GDT_score(maxd=12,maxw=4.5)= -16.4756 # GDT_score(maxd=12,maxw=4.7)= -16.1856 # GDT_score(maxd=14,maxw=5.2)= -17.2004 # GDT_score(maxd=14,maxw=5.5)= -16.6534 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.9870000e+03 rmsd (weighted)= 1.9492309e+01 (unweighted)= 7.2316971e+01 superimposing iter= 1 total_weight= 3.4784971e+03 rmsd (weighted)= 1.1601778e+01 (unweighted)= 7.2039905e+01 superimposing iter= 2 total_weight= 2.2437638e+03 rmsd (weighted)= 8.7240271e+00 (unweighted)= 7.1751174e+01 superimposing iter= 3 total_weight= 1.8452623e+03 rmsd (weighted)= 7.2651657e+00 (unweighted)= 7.1584334e+01 superimposing iter= 4 total_weight= 1.5970815e+03 rmsd (weighted)= 6.5191801e+00 (unweighted)= 7.1507146e+01 superimposing iter= 5 total_weight= 1.4628455e+03 rmsd (weighted)= 6.1239239e+00 (unweighted)= 7.1461598e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0287)S15.C and (T0287)K18.C only 0.0000000e+00 apart, marking (T0287)K18.C as missing WARNING: atoms too close: (T0287)K16.N and (T0287)K19.N only 0.0000000e+00 apart, marking (T0287)K16.N as missing WARNING: atoms too close: (T0287)K16.CA and (T0287)K19.CA only 0.0000000e+00 apart, marking (T0287)K16.CA as missing WARNING: atoms too close: (T0287)A74.C and (T0287)I76.C only 0.0000000e+00 apart, marking (T0287)I76.C as missing WARNING: atoms too close: (T0287)V75.N and (T0287)K77.N only 0.0000000e+00 apart, marking (T0287)V75.N as missing WARNING: atoms too close: (T0287)V75.CA and (T0287)K77.CA only 0.0000000e+00 apart, marking (T0287)V75.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.509317 # GDT_score = -19.8758 # GDT_score(maxd=8,maxw=2.9)= -18.7445 # GDT_score(maxd=8,maxw=3.2)= -18.2064 # GDT_score(maxd=8,maxw=3.5)= -17.5931 # GDT_score(maxd=10,maxw=3.8)= -18.9688 # GDT_score(maxd=10,maxw=4)= -18.4912 # GDT_score(maxd=10,maxw=4.2)= -17.9934 # GDT_score(maxd=12,maxw=4.3)= -19.5917 # GDT_score(maxd=12,maxw=4.5)= -19.068 # GDT_score(maxd=12,maxw=4.7)= -18.5601 # GDT_score(maxd=14,maxw=5.2)= -18.9198 # GDT_score(maxd=14,maxw=5.5)= -18.1754 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0287)L109.C and (T0287)S126.C only 0.0000000e+00 apart, marking (T0287)S126.C as missing WARNING: atoms too close: (T0287)F110.N and (T0287)K127.N only 0.0000000e+00 apart, marking (T0287)F110.N as missing WARNING: atoms too close: (T0287)F110.CA and (T0287)K127.CA only 0.0000000e+00 apart, marking (T0287)F110.CA as missing WARNING: atoms too close: (T0287)K127.C and (T0287)K132.C only 0.0000000e+00 apart, marking (T0287)K132.C as missing WARNING: atoms too close: (T0287)P128.N and (T0287)M133.N only 0.0000000e+00 apart, marking (T0287)P128.N as missing WARNING: atoms too close: (T0287)P128.CA and (T0287)M133.CA only 0.0000000e+00 apart, marking (T0287)P128.CA as missing WARNING: atoms too close: (T0287)I135.C and (T0287)D139.C only 0.0000000e+00 apart, marking (T0287)D139.C as missing WARNING: atoms too close: (T0287)R136.N and (T0287)S140.N only 0.0000000e+00 apart, marking (T0287)R136.N as missing WARNING: atoms too close: (T0287)R136.CA and (T0287)S140.CA only 0.0000000e+00 apart, marking (T0287)R136.CA as missing WARNING: atoms too close: (T0287)L144.C and (T0287)Y145.C only 0.0000000e+00 apart, marking (T0287)Y145.C as missing WARNING: atoms too close: (T0287)Y145.N and (T0287)G146.N only 0.0000000e+00 apart, marking (T0287)Y145.N as missing WARNING: atoms too close: (T0287)Y145.CA and (T0287)G146.CA only 0.0000000e+00 apart, marking (T0287)Y145.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.440994 # GDT_score = -15.0621 # GDT_score(maxd=8,maxw=2.9)= -14.3756 # GDT_score(maxd=8,maxw=3.2)= -14.0007 # GDT_score(maxd=8,maxw=3.5)= -13.5993 # GDT_score(maxd=10,maxw=3.8)= -14.8148 # GDT_score(maxd=10,maxw=4)= -14.485 # GDT_score(maxd=10,maxw=4.2)= -14.1746 # GDT_score(maxd=12,maxw=4.3)= -15.4033 # GDT_score(maxd=12,maxw=4.5)= -15.0677 # GDT_score(maxd=12,maxw=4.7)= -14.7245 # GDT_score(maxd=14,maxw=5.2)= -15.0878 # GDT_score(maxd=14,maxw=5.5)= -14.558 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0287)K63.C and (T0287)V64.C only 0.0000000e+00 apart, marking (T0287)V64.C as missing WARNING: atoms too close: (T0287)V64.N and (T0287)L65.N only 0.0000000e+00 apart, marking (T0287)V64.N as missing WARNING: atoms too close: (T0287)V64.CA and (T0287)L65.CA only 0.0000000e+00 apart, marking (T0287)V64.CA as missing WARNING: atoms too close: (T0287)D139.C and (T0287)Y145.C only 0.0000000e+00 apart, marking (T0287)Y145.C as missing WARNING: atoms too close: (T0287)S140.N and (T0287)G146.N only 0.0000000e+00 apart, marking (T0287)S140.N as missing WARNING: atoms too close: (T0287)S140.CA and (T0287)G146.CA only 0.0000000e+00 apart, marking (T0287)S140.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0287)K37.C and (T0287)K39.C only 0.0000000e+00 apart, marking (T0287)K39.C as missing WARNING: atoms too close: (T0287)K38.N and (T0287)I40.N only 0.0000000e+00 apart, marking (T0287)K38.N as missing WARNING: atoms too close: (T0287)K38.CA and (T0287)I40.CA only 0.0000000e+00 apart, marking (T0287)K38.CA as missing WARNING: atoms too close: (T0287)Q53.C and (T0287)K58.C only 0.0000000e+00 apart, marking (T0287)K58.C as missing WARNING: atoms too close: (T0287)M54.N and (T0287)G59.N only 0.0000000e+00 apart, marking (T0287)M54.N as missing WARNING: atoms too close: (T0287)M54.CA and (T0287)G59.CA only 0.0000000e+00 apart, marking (T0287)M54.CA as missing WARNING: atoms too close: (T0287)A74.C and (T0287)F84.C only 0.0000000e+00 apart, marking (T0287)F84.C as missing WARNING: atoms too close: (T0287)V75.N and (T0287)K85.N only 0.0000000e+00 apart, marking (T0287)V75.N as missing WARNING: atoms too close: (T0287)V75.CA and (T0287)K85.CA only 0.0000000e+00 apart, marking (T0287)V75.CA as missing WARNING: atoms too close: (T0287)L90.C and (T0287)E94.C only 0.0000000e+00 apart, marking (T0287)E94.C as missing WARNING: atoms too close: (T0287)L91.N and (T0287)T95.N only 0.0000000e+00 apart, marking (T0287)L91.N as missing WARNING: atoms too close: (T0287)L91.CA and (T0287)T95.CA only 0.0000000e+00 apart, marking (T0287)L91.CA as missing WARNING: atoms too close: (T0287)K184.C and (T0287)Y190.C only 0.0000000e+00 apart, marking (T0287)Y190.C as missing WARNING: atoms too close: (T0287)F185.N and (T0287)M191.N only 0.0000000e+00 apart, marking (T0287)F185.N as missing WARNING: atoms too close: (T0287)F185.CA and (T0287)M191.CA only 0.0000000e+00 apart, marking (T0287)F185.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0287.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0287)G59.C and (T0287)I79.C only 0.0000000e+00 apart, marking (T0287)I79.C as missing WARNING: atoms too close: (T0287)A60.N and (T0287)G80.N only 0.0000000e+00 apart, marking (T0287)A60.N as missing WARNING: atoms too close: (T0287)A60.CA and (T0287)G80.CA only 0.0000000e+00 apart, marking (T0287)A60.CA as missing WARNING: atoms too close: (T0287)F84.C and (T0287)L91.C only 0.0000000e+00 apart, marking (T0287)L91.C as missing WARNING: atoms too close: (T0287)K85.N and (T0287)E92.N only 0.0000000e+00 apart, marking (T0287)K85.N as missing WARNING: atoms too close: (T0287)K85.CA and (T0287)E92.CA only 0.0000000e+00 apart, marking (T0287)K85.CA as missing WARNING: atoms too close: (T0287)F110.C and (T0287)F124.C only 0.0000000e+00 apart, marking (T0287)F124.C as missing WARNING: atoms too close: (T0287)S111.N and (T0287)F125.N only 0.0000000e+00 apart, marking (T0287)S111.N as missing WARNING: atoms too close: (T0287)S111.CA and (T0287)F125.CA only 0.0000000e+00 apart, marking (T0287)S111.CA as missing WARNING: atoms too close: (T0287)L151.C and (T0287)A166.C only 0.0000000e+00 apart, marking (T0287)A166.C as missing WARNING: atoms too close: (T0287)L152.N and (T0287)N167.N only 0.0000000e+00 apart, marking (T0287)L152.N as missing WARNING: atoms too close: (T0287)L152.CA and (T0287)N167.CA only 0.0000000e+00 apart, marking (T0287)L152.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1-old.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1-scwrl-old.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2-old.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try23-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try24-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0287.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file first-T0287.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file short.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1817484309.pdb -s /var/tmp/to_scwrl_1817484309.seq -o /var/tmp/from_scwrl_1817484309.pdb > /var/tmp/scwrl_1817484309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1817484309.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1552965625.pdb -s /var/tmp/to_scwrl_1552965625.seq -o /var/tmp/from_scwrl_1552965625.pdb > /var/tmp/scwrl_1552965625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552965625.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_136275220.pdb -s /var/tmp/to_scwrl_136275220.seq -o /var/tmp/from_scwrl_136275220.pdb > /var/tmp/scwrl_136275220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136275220.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1751597942.pdb -s /var/tmp/to_scwrl_1751597942.seq -o /var/tmp/from_scwrl_1751597942.pdb > /var/tmp/scwrl_1751597942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1751597942.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_327522157.pdb -s /var/tmp/to_scwrl_327522157.seq -o /var/tmp/from_scwrl_327522157.pdb > /var/tmp/scwrl_327522157.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327522157.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1469112520.pdb -s /var/tmp/to_scwrl_1469112520.seq -o /var/tmp/from_scwrl_1469112520.pdb > /var/tmp/scwrl_1469112520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1469112520.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_680175005.pdb -s /var/tmp/to_scwrl_680175005.seq -o /var/tmp/from_scwrl_680175005.pdb > /var/tmp/scwrl_680175005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_680175005.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1104791096.pdb -s /var/tmp/to_scwrl_1104791096.seq -o /var/tmp/from_scwrl_1104791096.pdb > /var/tmp/scwrl_1104791096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1104791096.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_770963869.pdb -s /var/tmp/to_scwrl_770963869.seq -o /var/tmp/from_scwrl_770963869.pdb > /var/tmp/scwrl_770963869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770963869.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_557784310.pdb -s /var/tmp/to_scwrl_557784310.seq -o /var/tmp/from_scwrl_557784310.pdb > /var/tmp/scwrl_557784310.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557784310.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2027095036.pdb -s /var/tmp/to_scwrl_2027095036.seq -o /var/tmp/from_scwrl_2027095036.pdb > /var/tmp/scwrl_2027095036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027095036.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1061617292.pdb -s /var/tmp/to_scwrl_1061617292.seq -o /var/tmp/from_scwrl_1061617292.pdb > /var/tmp/scwrl_1061617292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1061617292.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_202906581.pdb -s /var/tmp/to_scwrl_202906581.seq -o /var/tmp/from_scwrl_202906581.pdb > /var/tmp/scwrl_202906581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202906581.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2097484212.pdb -s /var/tmp/to_scwrl_2097484212.seq -o /var/tmp/from_scwrl_2097484212.pdb > /var/tmp/scwrl_2097484212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097484212.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_586136208.pdb -s /var/tmp/to_scwrl_586136208.seq -o /var/tmp/from_scwrl_586136208.pdb > /var/tmp/scwrl_586136208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_586136208.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_556276206.pdb -s /var/tmp/to_scwrl_556276206.seq -o /var/tmp/from_scwrl_556276206.pdb > /var/tmp/scwrl_556276206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_556276206.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1964294575.pdb -s /var/tmp/to_scwrl_1964294575.seq -o /var/tmp/from_scwrl_1964294575.pdb > /var/tmp/scwrl_1964294575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964294575.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2089905082.pdb -s /var/tmp/to_scwrl_2089905082.seq -o /var/tmp/from_scwrl_2089905082.pdb > /var/tmp/scwrl_2089905082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2089905082.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_278897463.pdb -s /var/tmp/to_scwrl_278897463.seq -o /var/tmp/from_scwrl_278897463.pdb > /var/tmp/scwrl_278897463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_278897463.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_442381564.pdb -s /var/tmp/to_scwrl_442381564.seq -o /var/tmp/from_scwrl_442381564.pdb > /var/tmp/scwrl_442381564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_442381564.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_967239299.pdb -s /var/tmp/to_scwrl_967239299.seq -o /var/tmp/from_scwrl_967239299.pdb > /var/tmp/scwrl_967239299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_967239299.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1982019875.pdb -s /var/tmp/to_scwrl_1982019875.seq -o /var/tmp/from_scwrl_1982019875.pdb > /var/tmp/scwrl_1982019875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1982019875.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1493523239.pdb -s /var/tmp/to_scwrl_1493523239.seq -o /var/tmp/from_scwrl_1493523239.pdb > /var/tmp/scwrl_1493523239.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493523239.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_39069731.pdb -s /var/tmp/to_scwrl_39069731.seq -o /var/tmp/from_scwrl_39069731.pdb > /var/tmp/scwrl_39069731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_39069731.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_224648305.pdb -s /var/tmp/to_scwrl_224648305.seq -o /var/tmp/from_scwrl_224648305.pdb > /var/tmp/scwrl_224648305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_224648305.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_685079275.pdb -s /var/tmp/to_scwrl_685079275.seq -o /var/tmp/from_scwrl_685079275.pdb > /var/tmp/scwrl_685079275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_685079275.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1565893823.pdb -s /var/tmp/to_scwrl_1565893823.seq -o /var/tmp/from_scwrl_1565893823.pdb > /var/tmp/scwrl_1565893823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1565893823.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1974469358.pdb -s /var/tmp/to_scwrl_1974469358.seq -o /var/tmp/from_scwrl_1974469358.pdb > /var/tmp/scwrl_1974469358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974469358.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_323208205.pdb -s /var/tmp/to_scwrl_323208205.seq -o /var/tmp/from_scwrl_323208205.pdb > /var/tmp/scwrl_323208205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323208205.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1061316290.pdb -s /var/tmp/to_scwrl_1061316290.seq -o /var/tmp/from_scwrl_1061316290.pdb > /var/tmp/scwrl_1061316290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1061316290.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1011051243.pdb -s /var/tmp/to_scwrl_1011051243.seq -o /var/tmp/from_scwrl_1011051243.pdb > /var/tmp/scwrl_1011051243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1011051243.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2140692514.pdb -s /var/tmp/to_scwrl_2140692514.seq -o /var/tmp/from_scwrl_2140692514.pdb > /var/tmp/scwrl_2140692514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2140692514.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_466798269.pdb -s /var/tmp/to_scwrl_466798269.seq -o /var/tmp/from_scwrl_466798269.pdb > /var/tmp/scwrl_466798269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466798269.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1147326462.pdb -s /var/tmp/to_scwrl_1147326462.seq -o /var/tmp/from_scwrl_1147326462.pdb > /var/tmp/scwrl_1147326462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147326462.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1744806809.pdb -s /var/tmp/to_scwrl_1744806809.seq -o /var/tmp/from_scwrl_1744806809.pdb > /var/tmp/scwrl_1744806809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744806809.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_794320426.pdb -s /var/tmp/to_scwrl_794320426.seq -o /var/tmp/from_scwrl_794320426.pdb > /var/tmp/scwrl_794320426.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794320426.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_468955337.pdb -s /var/tmp/to_scwrl_468955337.seq -o /var/tmp/from_scwrl_468955337.pdb > /var/tmp/scwrl_468955337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_468955337.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_277498168.pdb -s /var/tmp/to_scwrl_277498168.seq -o /var/tmp/from_scwrl_277498168.pdb > /var/tmp/scwrl_277498168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277498168.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1899111523.pdb -s /var/tmp/to_scwrl_1899111523.seq -o /var/tmp/from_scwrl_1899111523.pdb > /var/tmp/scwrl_1899111523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899111523.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1239919205.pdb -s /var/tmp/to_scwrl_1239919205.seq -o /var/tmp/from_scwrl_1239919205.pdb > /var/tmp/scwrl_1239919205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239919205.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_835282478.pdb -s /var/tmp/to_scwrl_835282478.seq -o /var/tmp/from_scwrl_835282478.pdb > /var/tmp/scwrl_835282478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_835282478.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1778722912.pdb -s /var/tmp/to_scwrl_1778722912.seq -o /var/tmp/from_scwrl_1778722912.pdb > /var/tmp/scwrl_1778722912.log Error: Couldn't open file /var/tmp/from_scwrl_1778722912.pdb or /var/tmp/from_scwrl_1778722912.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1778722912_b.pdb or decoys//var/tmp/from_scwrl_1778722912_b.pdb.gz for input Trying /var/tmp/from_scwrl_1778722912_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1778722912_b.pdb or /var/tmp/from_scwrl_1778722912_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1778722912_a.pdb or decoys//var/tmp/from_scwrl_1778722912_a.pdb.gz for input Trying /var/tmp/from_scwrl_1778722912_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1778722912_a.pdb or /var/tmp/from_scwrl_1778722912_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1778722912.pdb or /var/tmp/from_scwrl_1778722912_b.pdb or /var/tmp/from_scwrl_1778722912_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_154052850.pdb -s /var/tmp/to_scwrl_154052850.seq -o /var/tmp/from_scwrl_154052850.pdb > /var/tmp/scwrl_154052850.log Error: Couldn't open file /var/tmp/from_scwrl_154052850.pdb or /var/tmp/from_scwrl_154052850.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_154052850_b.pdb or decoys//var/tmp/from_scwrl_154052850_b.pdb.gz for input Trying /var/tmp/from_scwrl_154052850_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_154052850_b.pdb or /var/tmp/from_scwrl_154052850_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_154052850_a.pdb or decoys//var/tmp/from_scwrl_154052850_a.pdb.gz for input Trying /var/tmp/from_scwrl_154052850_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_154052850_a.pdb or /var/tmp/from_scwrl_154052850_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_154052850.pdb or /var/tmp/from_scwrl_154052850_b.pdb or /var/tmp/from_scwrl_154052850_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1038189060.pdb -s /var/tmp/to_scwrl_1038189060.seq -o /var/tmp/from_scwrl_1038189060.pdb > /var/tmp/scwrl_1038189060.log Error: Couldn't open file /var/tmp/from_scwrl_1038189060.pdb or /var/tmp/from_scwrl_1038189060.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1038189060_b.pdb or decoys//var/tmp/from_scwrl_1038189060_b.pdb.gz for input Trying /var/tmp/from_scwrl_1038189060_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1038189060_b.pdb or /var/tmp/from_scwrl_1038189060_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1038189060_a.pdb or decoys//var/tmp/from_scwrl_1038189060_a.pdb.gz for input Trying /var/tmp/from_scwrl_1038189060_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1038189060_a.pdb or /var/tmp/from_scwrl_1038189060_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1038189060.pdb or /var/tmp/from_scwrl_1038189060_b.pdb or /var/tmp/from_scwrl_1038189060_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1728723477.pdb -s /var/tmp/to_scwrl_1728723477.seq -o /var/tmp/from_scwrl_1728723477.pdb > /var/tmp/scwrl_1728723477.log Error: Couldn't open file /var/tmp/from_scwrl_1728723477.pdb or /var/tmp/from_scwrl_1728723477.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1728723477_b.pdb or decoys//var/tmp/from_scwrl_1728723477_b.pdb.gz for input Trying /var/tmp/from_scwrl_1728723477_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1728723477_b.pdb or /var/tmp/from_scwrl_1728723477_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1728723477_a.pdb or decoys//var/tmp/from_scwrl_1728723477_a.pdb.gz for input Trying /var/tmp/from_scwrl_1728723477_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1728723477_a.pdb or /var/tmp/from_scwrl_1728723477_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1728723477.pdb or /var/tmp/from_scwrl_1728723477_b.pdb or /var/tmp/from_scwrl_1728723477_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_740189058.pdb -s /var/tmp/to_scwrl_740189058.seq -o /var/tmp/from_scwrl_740189058.pdb > /var/tmp/scwrl_740189058.log Error: Couldn't open file /var/tmp/from_scwrl_740189058.pdb or /var/tmp/from_scwrl_740189058.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_740189058_b.pdb or decoys//var/tmp/from_scwrl_740189058_b.pdb.gz for input Trying /var/tmp/from_scwrl_740189058_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_740189058_b.pdb or /var/tmp/from_scwrl_740189058_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_740189058_a.pdb or decoys//var/tmp/from_scwrl_740189058_a.pdb.gz for input Trying /var/tmp/from_scwrl_740189058_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_740189058_a.pdb or /var/tmp/from_scwrl_740189058_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_740189058.pdb or /var/tmp/from_scwrl_740189058_b.pdb or /var/tmp/from_scwrl_740189058_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1594465265.pdb -s /var/tmp/to_scwrl_1594465265.seq -o /var/tmp/from_scwrl_1594465265.pdb > /var/tmp/scwrl_1594465265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1594465265.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1545534406.pdb -s /var/tmp/to_scwrl_1545534406.seq -o /var/tmp/from_scwrl_1545534406.pdb > /var/tmp/scwrl_1545534406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1545534406.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_682610494.pdb -s /var/tmp/to_scwrl_682610494.seq -o /var/tmp/from_scwrl_682610494.pdb > /var/tmp/scwrl_682610494.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_682610494.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1873362728.pdb -s /var/tmp/to_scwrl_1873362728.seq -o /var/tmp/from_scwrl_1873362728.pdb > /var/tmp/scwrl_1873362728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1873362728.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1987915970.pdb -s /var/tmp/to_scwrl_1987915970.seq -o /var/tmp/from_scwrl_1987915970.pdb > /var/tmp/scwrl_1987915970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1987915970.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1649849792.pdb -s /var/tmp/to_scwrl_1649849792.seq -o /var/tmp/from_scwrl_1649849792.pdb > /var/tmp/scwrl_1649849792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1649849792.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1707898956.pdb -s /var/tmp/to_scwrl_1707898956.seq -o /var/tmp/from_scwrl_1707898956.pdb > /var/tmp/scwrl_1707898956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1707898956.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1333955562.pdb -s /var/tmp/to_scwrl_1333955562.seq -o /var/tmp/from_scwrl_1333955562.pdb > /var/tmp/scwrl_1333955562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1333955562.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1688919523.pdb -s /var/tmp/to_scwrl_1688919523.seq -o /var/tmp/from_scwrl_1688919523.pdb > /var/tmp/scwrl_1688919523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688919523.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1932547262.pdb -s /var/tmp/to_scwrl_1932547262.seq -o /var/tmp/from_scwrl_1932547262.pdb > /var/tmp/scwrl_1932547262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1932547262.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2019034838.pdb -s /var/tmp/to_scwrl_2019034838.seq -o /var/tmp/from_scwrl_2019034838.pdb > /var/tmp/scwrl_2019034838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2019034838.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1107329700.pdb -s /var/tmp/to_scwrl_1107329700.seq -o /var/tmp/from_scwrl_1107329700.pdb > /var/tmp/scwrl_1107329700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1107329700.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1759532973.pdb -s /var/tmp/to_scwrl_1759532973.seq -o /var/tmp/from_scwrl_1759532973.pdb > /var/tmp/scwrl_1759532973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1759532973.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_194759396.pdb -s /var/tmp/to_scwrl_194759396.seq -o /var/tmp/from_scwrl_194759396.pdb > /var/tmp/scwrl_194759396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194759396.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_21162343.pdb -s /var/tmp/to_scwrl_21162343.seq -o /var/tmp/from_scwrl_21162343.pdb > /var/tmp/scwrl_21162343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_21162343.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_623100569.pdb -s /var/tmp/to_scwrl_623100569.seq -o /var/tmp/from_scwrl_623100569.pdb > /var/tmp/scwrl_623100569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623100569.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_187968263.pdb -s /var/tmp/to_scwrl_187968263.seq -o /var/tmp/from_scwrl_187968263.pdb > /var/tmp/scwrl_187968263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_187968263.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_487960612.pdb -s /var/tmp/to_scwrl_487960612.seq -o /var/tmp/from_scwrl_487960612.pdb > /var/tmp/scwrl_487960612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487960612.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1770427031.pdb -s /var/tmp/to_scwrl_1770427031.seq -o /var/tmp/from_scwrl_1770427031.pdb > /var/tmp/scwrl_1770427031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770427031.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1932775073.pdb -s /var/tmp/to_scwrl_1932775073.seq -o /var/tmp/from_scwrl_1932775073.pdb > /var/tmp/scwrl_1932775073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1932775073.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1282281038.pdb -s /var/tmp/to_scwrl_1282281038.seq -o /var/tmp/from_scwrl_1282281038.pdb > /var/tmp/scwrl_1282281038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282281038.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_91898721.pdb -s /var/tmp/to_scwrl_91898721.seq -o /var/tmp/from_scwrl_91898721.pdb > /var/tmp/scwrl_91898721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_91898721.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_62789594.pdb -s /var/tmp/to_scwrl_62789594.seq -o /var/tmp/from_scwrl_62789594.pdb > /var/tmp/scwrl_62789594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62789594.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1033908915.pdb -s /var/tmp/to_scwrl_1033908915.seq -o /var/tmp/from_scwrl_1033908915.pdb > /var/tmp/scwrl_1033908915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033908915.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1331817927.pdb -s /var/tmp/to_scwrl_1331817927.seq -o /var/tmp/from_scwrl_1331817927.pdb > /var/tmp/scwrl_1331817927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331817927.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_898072072.pdb -s /var/tmp/to_scwrl_898072072.seq -o /var/tmp/from_scwrl_898072072.pdb > /var/tmp/scwrl_898072072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_898072072.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_665148180.pdb -s /var/tmp/to_scwrl_665148180.seq -o /var/tmp/from_scwrl_665148180.pdb > /var/tmp/scwrl_665148180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_665148180.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1485870777.pdb -s /var/tmp/to_scwrl_1485870777.seq -o /var/tmp/from_scwrl_1485870777.pdb > /var/tmp/scwrl_1485870777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1485870777.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1936261131.pdb -s /var/tmp/to_scwrl_1936261131.seq -o /var/tmp/from_scwrl_1936261131.pdb > /var/tmp/scwrl_1936261131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1936261131.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_246388011.pdb -s /var/tmp/to_scwrl_246388011.seq -o /var/tmp/from_scwrl_246388011.pdb > /var/tmp/scwrl_246388011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246388011.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_78576189.pdb -s /var/tmp/to_scwrl_78576189.seq -o /var/tmp/from_scwrl_78576189.pdb > /var/tmp/scwrl_78576189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78576189.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1383242749.pdb -s /var/tmp/to_scwrl_1383242749.seq -o /var/tmp/from_scwrl_1383242749.pdb > /var/tmp/scwrl_1383242749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1383242749.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1791922417.pdb -s /var/tmp/to_scwrl_1791922417.seq -o /var/tmp/from_scwrl_1791922417.pdb > /var/tmp/scwrl_1791922417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1791922417.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_761186683.pdb -s /var/tmp/to_scwrl_761186683.seq -o /var/tmp/from_scwrl_761186683.pdb > /var/tmp/scwrl_761186683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_761186683.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1109121830.pdb -s /var/tmp/to_scwrl_1109121830.seq -o /var/tmp/from_scwrl_1109121830.pdb > /var/tmp/scwrl_1109121830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1109121830.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1632354740.pdb -s /var/tmp/to_scwrl_1632354740.seq -o /var/tmp/from_scwrl_1632354740.pdb > /var/tmp/scwrl_1632354740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1632354740.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_263552828.pdb -s /var/tmp/to_scwrl_263552828.seq -o /var/tmp/from_scwrl_263552828.pdb > /var/tmp/scwrl_263552828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263552828.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_669537141.pdb -s /var/tmp/to_scwrl_669537141.seq -o /var/tmp/from_scwrl_669537141.pdb > /var/tmp/scwrl_669537141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669537141.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_818826657.pdb -s /var/tmp/to_scwrl_818826657.seq -o /var/tmp/from_scwrl_818826657.pdb > /var/tmp/scwrl_818826657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_818826657.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1952472351.pdb -s /var/tmp/to_scwrl_1952472351.seq -o /var/tmp/from_scwrl_1952472351.pdb > /var/tmp/scwrl_1952472351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1952472351.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_454600756.pdb -s /var/tmp/to_scwrl_454600756.seq -o /var/tmp/from_scwrl_454600756.pdb > /var/tmp/scwrl_454600756.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_454600756.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_690377848.pdb -s /var/tmp/to_scwrl_690377848.seq -o /var/tmp/from_scwrl_690377848.pdb > /var/tmp/scwrl_690377848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690377848.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_912318405.pdb -s /var/tmp/to_scwrl_912318405.seq -o /var/tmp/from_scwrl_912318405.pdb > /var/tmp/scwrl_912318405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912318405.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_66650082.pdb -s /var/tmp/to_scwrl_66650082.seq -o /var/tmp/from_scwrl_66650082.pdb > /var/tmp/scwrl_66650082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66650082.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_885137244.pdb -s /var/tmp/to_scwrl_885137244.seq -o /var/tmp/from_scwrl_885137244.pdb > /var/tmp/scwrl_885137244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885137244.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_933480749.pdb -s /var/tmp/to_scwrl_933480749.seq -o /var/tmp/from_scwrl_933480749.pdb > /var/tmp/scwrl_933480749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933480749.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_689750651.pdb -s /var/tmp/to_scwrl_689750651.seq -o /var/tmp/from_scwrl_689750651.pdb > /var/tmp/scwrl_689750651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_689750651.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1073105507.pdb -s /var/tmp/to_scwrl_1073105507.seq -o /var/tmp/from_scwrl_1073105507.pdb > /var/tmp/scwrl_1073105507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073105507.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1421441360.pdb -s /var/tmp/to_scwrl_1421441360.seq -o /var/tmp/from_scwrl_1421441360.pdb > /var/tmp/scwrl_1421441360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1421441360.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_312694035.pdb -s /var/tmp/to_scwrl_312694035.seq -o /var/tmp/from_scwrl_312694035.pdb > /var/tmp/scwrl_312694035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_312694035.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_858396933.pdb -s /var/tmp/to_scwrl_858396933.seq -o /var/tmp/from_scwrl_858396933.pdb > /var/tmp/scwrl_858396933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_858396933.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_556238752.pdb -s /var/tmp/to_scwrl_556238752.seq -o /var/tmp/from_scwrl_556238752.pdb > /var/tmp/scwrl_556238752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_556238752.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_404592757.pdb -s /var/tmp/to_scwrl_404592757.seq -o /var/tmp/from_scwrl_404592757.pdb > /var/tmp/scwrl_404592757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_404592757.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_921186527.pdb -s /var/tmp/to_scwrl_921186527.seq -o /var/tmp/from_scwrl_921186527.pdb > /var/tmp/scwrl_921186527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921186527.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1590147666.pdb -s /var/tmp/to_scwrl_1590147666.seq -o /var/tmp/from_scwrl_1590147666.pdb > /var/tmp/scwrl_1590147666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590147666.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1736410684.pdb -s /var/tmp/to_scwrl_1736410684.seq -o /var/tmp/from_scwrl_1736410684.pdb > /var/tmp/scwrl_1736410684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1736410684.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1819258599.pdb -s /var/tmp/to_scwrl_1819258599.seq -o /var/tmp/from_scwrl_1819258599.pdb > /var/tmp/scwrl_1819258599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819258599.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_AL1.pdb.gz failed. # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_107812200.pdb -s /var/tmp/to_scwrl_107812200.seq -o /var/tmp/from_scwrl_107812200.pdb > /var/tmp/scwrl_107812200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107812200.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed. # naming current conformation MIG_FROST_FLEX_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1074797814.pdb -s /var/tmp/to_scwrl_1074797814.seq -o /var/tmp/from_scwrl_1074797814.pdb > /var/tmp/scwrl_1074797814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074797814.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_FLEX_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1608036083.pdb -s /var/tmp/to_scwrl_1608036083.seq -o /var/tmp/from_scwrl_1608036083.pdb > /var/tmp/scwrl_1608036083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1608036083.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_354200211.pdb -s /var/tmp/to_scwrl_354200211.seq -o /var/tmp/from_scwrl_354200211.pdb > /var/tmp/scwrl_354200211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_354200211.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1153374003.pdb -s /var/tmp/to_scwrl_1153374003.seq -o /var/tmp/from_scwrl_1153374003.pdb > /var/tmp/scwrl_1153374003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153374003.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_843795187.pdb -s /var/tmp/to_scwrl_843795187.seq -o /var/tmp/from_scwrl_843795187.pdb > /var/tmp/scwrl_843795187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843795187.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2146122628.pdb -s /var/tmp/to_scwrl_2146122628.seq -o /var/tmp/from_scwrl_2146122628.pdb > /var/tmp/scwrl_2146122628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2146122628.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1914560686.pdb -s /var/tmp/to_scwrl_1914560686.seq -o /var/tmp/from_scwrl_1914560686.pdb > /var/tmp/scwrl_1914560686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914560686.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1952917017.pdb -s /var/tmp/to_scwrl_1952917017.seq -o /var/tmp/from_scwrl_1952917017.pdb > /var/tmp/scwrl_1952917017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1952917017.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1630993721.pdb -s /var/tmp/to_scwrl_1630993721.seq -o /var/tmp/from_scwrl_1630993721.pdb > /var/tmp/scwrl_1630993721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630993721.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_30629867.pdb -s /var/tmp/to_scwrl_30629867.seq -o /var/tmp/from_scwrl_30629867.pdb > /var/tmp/scwrl_30629867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30629867.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_474970511.pdb -s /var/tmp/to_scwrl_474970511.seq -o /var/tmp/from_scwrl_474970511.pdb > /var/tmp/scwrl_474970511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_474970511.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_302336731.pdb -s /var/tmp/to_scwrl_302336731.seq -o /var/tmp/from_scwrl_302336731.pdb > /var/tmp/scwrl_302336731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_302336731.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1983102219.pdb -s /var/tmp/to_scwrl_1983102219.seq -o /var/tmp/from_scwrl_1983102219.pdb > /var/tmp/scwrl_1983102219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983102219.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_929571267.pdb -s /var/tmp/to_scwrl_929571267.seq -o /var/tmp/from_scwrl_929571267.pdb > /var/tmp/scwrl_929571267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929571267.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_992714579.pdb -s /var/tmp/to_scwrl_992714579.seq -o /var/tmp/from_scwrl_992714579.pdb > /var/tmp/scwrl_992714579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_992714579.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_747936977.pdb -s /var/tmp/to_scwrl_747936977.seq -o /var/tmp/from_scwrl_747936977.pdb > /var/tmp/scwrl_747936977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747936977.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_996221349.pdb -s /var/tmp/to_scwrl_996221349.seq -o /var/tmp/from_scwrl_996221349.pdb > /var/tmp/scwrl_996221349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996221349.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1877851822.pdb -s /var/tmp/to_scwrl_1877851822.seq -o /var/tmp/from_scwrl_1877851822.pdb > /var/tmp/scwrl_1877851822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877851822.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1681417725.pdb -s /var/tmp/to_scwrl_1681417725.seq -o /var/tmp/from_scwrl_1681417725.pdb > /var/tmp/scwrl_1681417725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681417725.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1685971999.pdb -s /var/tmp/to_scwrl_1685971999.seq -o /var/tmp/from_scwrl_1685971999.pdb > /var/tmp/scwrl_1685971999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1685971999.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_803473683.pdb -s /var/tmp/to_scwrl_803473683.seq -o /var/tmp/from_scwrl_803473683.pdb > /var/tmp/scwrl_803473683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_803473683.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_955375440.pdb -s /var/tmp/to_scwrl_955375440.seq -o /var/tmp/from_scwrl_955375440.pdb > /var/tmp/scwrl_955375440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_955375440.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1998666035.pdb -s /var/tmp/to_scwrl_1998666035.seq -o /var/tmp/from_scwrl_1998666035.pdb > /var/tmp/scwrl_1998666035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1998666035.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1661870615.pdb -s /var/tmp/to_scwrl_1661870615.seq -o /var/tmp/from_scwrl_1661870615.pdb > /var/tmp/scwrl_1661870615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661870615.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1511614191.pdb -s /var/tmp/to_scwrl_1511614191.seq -o /var/tmp/from_scwrl_1511614191.pdb > /var/tmp/scwrl_1511614191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1511614191.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_255775145.pdb -s /var/tmp/to_scwrl_255775145.seq -o /var/tmp/from_scwrl_255775145.pdb > /var/tmp/scwrl_255775145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_255775145.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_435573496.pdb -s /var/tmp/to_scwrl_435573496.seq -o /var/tmp/from_scwrl_435573496.pdb > /var/tmp/scwrl_435573496.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_435573496.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_954278212.pdb -s /var/tmp/to_scwrl_954278212.seq -o /var/tmp/from_scwrl_954278212.pdb > /var/tmp/scwrl_954278212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_954278212.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1992185829.pdb -s /var/tmp/to_scwrl_1992185829.seq -o /var/tmp/from_scwrl_1992185829.pdb > /var/tmp/scwrl_1992185829.log sh: line 1: 23307 Killed scwrl3 -i /var/tmp/to_scwrl_1992185829.pdb -s /var/tmp/to_scwrl_1992185829.seq -o /var/tmp/from_scwrl_1992185829.pdb >/var/tmp/scwrl_1992185829.log Error: Couldn't open file /var/tmp/from_scwrl_1992185829.pdb or /var/tmp/from_scwrl_1992185829.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1992185829_b.pdb or decoys//var/tmp/from_scwrl_1992185829_b.pdb.gz for input Trying /var/tmp/from_scwrl_1992185829_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1992185829_b.pdb or /var/tmp/from_scwrl_1992185829_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1992185829_a.pdb or decoys//var/tmp/from_scwrl_1992185829_a.pdb.gz for input Trying /var/tmp/from_scwrl_1992185829_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1992185829_a.pdb or /var/tmp/from_scwrl_1992185829_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1992185829.pdb or /var/tmp/from_scwrl_1992185829_b.pdb or /var/tmp/from_scwrl_1992185829_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_107348448.pdb -s /var/tmp/to_scwrl_107348448.seq -o /var/tmp/from_scwrl_107348448.pdb > /var/tmp/scwrl_107348448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107348448.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1062090412.pdb -s /var/tmp/to_scwrl_1062090412.seq -o /var/tmp/from_scwrl_1062090412.pdb > /var/tmp/scwrl_1062090412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1062090412.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_919499997.pdb -s /var/tmp/to_scwrl_919499997.seq -o /var/tmp/from_scwrl_919499997.pdb > /var/tmp/scwrl_919499997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_919499997.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1715384531.pdb -s /var/tmp/to_scwrl_1715384531.seq -o /var/tmp/from_scwrl_1715384531.pdb > /var/tmp/scwrl_1715384531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1715384531.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1416290622.pdb -s /var/tmp/to_scwrl_1416290622.seq -o /var/tmp/from_scwrl_1416290622.pdb > /var/tmp/scwrl_1416290622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416290622.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2072874001.pdb -s /var/tmp/to_scwrl_2072874001.seq -o /var/tmp/from_scwrl_2072874001.pdb > /var/tmp/scwrl_2072874001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2072874001.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_411696071.pdb -s /var/tmp/to_scwrl_411696071.seq -o /var/tmp/from_scwrl_411696071.pdb > /var/tmp/scwrl_411696071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411696071.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1414929603.pdb -s /var/tmp/to_scwrl_1414929603.seq -o /var/tmp/from_scwrl_1414929603.pdb > /var/tmp/scwrl_1414929603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414929603.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1839951040.pdb -s /var/tmp/to_scwrl_1839951040.seq -o /var/tmp/from_scwrl_1839951040.pdb > /var/tmp/scwrl_1839951040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1839951040.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_217129442.pdb -s /var/tmp/to_scwrl_217129442.seq -o /var/tmp/from_scwrl_217129442.pdb > /var/tmp/scwrl_217129442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_217129442.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_898439678.pdb -s /var/tmp/to_scwrl_898439678.seq -o /var/tmp/from_scwrl_898439678.pdb > /var/tmp/scwrl_898439678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_898439678.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1870580908.pdb -s /var/tmp/to_scwrl_1870580908.seq -o /var/tmp/from_scwrl_1870580908.pdb > /var/tmp/scwrl_1870580908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870580908.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_692099953.pdb -s /var/tmp/to_scwrl_692099953.seq -o /var/tmp/from_scwrl_692099953.pdb > /var/tmp/scwrl_692099953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692099953.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1200776409.pdb -s /var/tmp/to_scwrl_1200776409.seq -o /var/tmp/from_scwrl_1200776409.pdb > /var/tmp/scwrl_1200776409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200776409.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1706199480.pdb -s /var/tmp/to_scwrl_1706199480.seq -o /var/tmp/from_scwrl_1706199480.pdb > /var/tmp/scwrl_1706199480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706199480.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1621671220.pdb -s /var/tmp/to_scwrl_1621671220.seq -o /var/tmp/from_scwrl_1621671220.pdb > /var/tmp/scwrl_1621671220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621671220.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_46007341.pdb -s /var/tmp/to_scwrl_46007341.seq -o /var/tmp/from_scwrl_46007341.pdb > /var/tmp/scwrl_46007341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46007341.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_306652810.pdb -s /var/tmp/to_scwrl_306652810.seq -o /var/tmp/from_scwrl_306652810.pdb > /var/tmp/scwrl_306652810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_306652810.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_470408922.pdb -s /var/tmp/to_scwrl_470408922.seq -o /var/tmp/from_scwrl_470408922.pdb > /var/tmp/scwrl_470408922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470408922.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1923859164.pdb -s /var/tmp/to_scwrl_1923859164.seq -o /var/tmp/from_scwrl_1923859164.pdb > /var/tmp/scwrl_1923859164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923859164.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1988070536.pdb -s /var/tmp/to_scwrl_1988070536.seq -o /var/tmp/from_scwrl_1988070536.pdb > /var/tmp/scwrl_1988070536.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1988070536.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_8897275.pdb -s /var/tmp/to_scwrl_8897275.seq -o /var/tmp/from_scwrl_8897275.pdb > /var/tmp/scwrl_8897275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_8897275.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_579849200.pdb -s /var/tmp/to_scwrl_579849200.seq -o /var/tmp/from_scwrl_579849200.pdb > /var/tmp/scwrl_579849200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_579849200.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_795962329.pdb -s /var/tmp/to_scwrl_795962329.seq -o /var/tmp/from_scwrl_795962329.pdb > /var/tmp/scwrl_795962329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_795962329.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2007563310.pdb -s /var/tmp/to_scwrl_2007563310.seq -o /var/tmp/from_scwrl_2007563310.pdb > /var/tmp/scwrl_2007563310.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007563310.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_94236168.pdb -s /var/tmp/to_scwrl_94236168.seq -o /var/tmp/from_scwrl_94236168.pdb > /var/tmp/scwrl_94236168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94236168.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_160092873.pdb -s /var/tmp/to_scwrl_160092873.seq -o /var/tmp/from_scwrl_160092873.pdb > /var/tmp/scwrl_160092873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_160092873.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_115854808.pdb -s /var/tmp/to_scwrl_115854808.seq -o /var/tmp/from_scwrl_115854808.pdb > /var/tmp/scwrl_115854808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115854808.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_529809664.pdb -s /var/tmp/to_scwrl_529809664.seq -o /var/tmp/from_scwrl_529809664.pdb > /var/tmp/scwrl_529809664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529809664.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1114371084.pdb -s /var/tmp/to_scwrl_1114371084.seq -o /var/tmp/from_scwrl_1114371084.pdb > /var/tmp/scwrl_1114371084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114371084.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2108040637.pdb -s /var/tmp/to_scwrl_2108040637.seq -o /var/tmp/from_scwrl_2108040637.pdb > /var/tmp/scwrl_2108040637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108040637.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_637158112.pdb -s /var/tmp/to_scwrl_637158112.seq -o /var/tmp/from_scwrl_637158112.pdb > /var/tmp/scwrl_637158112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637158112.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_28977849.pdb -s /var/tmp/to_scwrl_28977849.seq -o /var/tmp/from_scwrl_28977849.pdb > /var/tmp/scwrl_28977849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28977849.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_880056987.pdb -s /var/tmp/to_scwrl_880056987.seq -o /var/tmp/from_scwrl_880056987.pdb > /var/tmp/scwrl_880056987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_880056987.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_205058997.pdb -s /var/tmp/to_scwrl_205058997.seq -o /var/tmp/from_scwrl_205058997.pdb > /var/tmp/scwrl_205058997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_205058997.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1445268471.pdb -s /var/tmp/to_scwrl_1445268471.seq -o /var/tmp/from_scwrl_1445268471.pdb > /var/tmp/scwrl_1445268471.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1445268471.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_805447341.pdb -s /var/tmp/to_scwrl_805447341.seq -o /var/tmp/from_scwrl_805447341.pdb > /var/tmp/scwrl_805447341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805447341.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_616755068.pdb -s /var/tmp/to_scwrl_616755068.seq -o /var/tmp/from_scwrl_616755068.pdb > /var/tmp/scwrl_616755068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_616755068.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_712714428.pdb -s /var/tmp/to_scwrl_712714428.seq -o /var/tmp/from_scwrl_712714428.pdb > /var/tmp/scwrl_712714428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_712714428.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_497914735.pdb -s /var/tmp/to_scwrl_497914735.seq -o /var/tmp/from_scwrl_497914735.pdb > /var/tmp/scwrl_497914735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_497914735.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_833884510.pdb -s /var/tmp/to_scwrl_833884510.seq -o /var/tmp/from_scwrl_833884510.pdb > /var/tmp/scwrl_833884510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833884510.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1611154106.pdb -s /var/tmp/to_scwrl_1611154106.seq -o /var/tmp/from_scwrl_1611154106.pdb > /var/tmp/scwrl_1611154106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1611154106.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_221011996.pdb -s /var/tmp/to_scwrl_221011996.seq -o /var/tmp/from_scwrl_221011996.pdb > /var/tmp/scwrl_221011996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_221011996.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1525984463.pdb -s /var/tmp/to_scwrl_1525984463.seq -o /var/tmp/from_scwrl_1525984463.pdb > /var/tmp/scwrl_1525984463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1525984463.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_664446869.pdb -s /var/tmp/to_scwrl_664446869.seq -o /var/tmp/from_scwrl_664446869.pdb > /var/tmp/scwrl_664446869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_664446869.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1927211476.pdb -s /var/tmp/to_scwrl_1927211476.seq -o /var/tmp/from_scwrl_1927211476.pdb > /var/tmp/scwrl_1927211476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1927211476.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1000172037.pdb -s /var/tmp/to_scwrl_1000172037.seq -o /var/tmp/from_scwrl_1000172037.pdb > /var/tmp/scwrl_1000172037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000172037.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_710454210.pdb -s /var/tmp/to_scwrl_710454210.seq -o /var/tmp/from_scwrl_710454210.pdb > /var/tmp/scwrl_710454210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_710454210.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_86380639.pdb -s /var/tmp/to_scwrl_86380639.seq -o /var/tmp/from_scwrl_86380639.pdb > /var/tmp/scwrl_86380639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86380639.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1470580958.pdb -s /var/tmp/to_scwrl_1470580958.seq -o /var/tmp/from_scwrl_1470580958.pdb > /var/tmp/scwrl_1470580958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1470580958.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_486829727.pdb -s /var/tmp/to_scwrl_486829727.seq -o /var/tmp/from_scwrl_486829727.pdb > /var/tmp/scwrl_486829727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_486829727.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2074451175.pdb -s /var/tmp/to_scwrl_2074451175.seq -o /var/tmp/from_scwrl_2074451175.pdb > /var/tmp/scwrl_2074451175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074451175.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1479478233.pdb -s /var/tmp/to_scwrl_1479478233.seq -o /var/tmp/from_scwrl_1479478233.pdb > /var/tmp/scwrl_1479478233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1479478233.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1066678927.pdb -s /var/tmp/to_scwrl_1066678927.seq -o /var/tmp/from_scwrl_1066678927.pdb > /var/tmp/scwrl_1066678927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066678927.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_722929857.pdb -s /var/tmp/to_scwrl_722929857.seq -o /var/tmp/from_scwrl_722929857.pdb > /var/tmp/scwrl_722929857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_722929857.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1339557896.pdb -s /var/tmp/to_scwrl_1339557896.seq -o /var/tmp/from_scwrl_1339557896.pdb > /var/tmp/scwrl_1339557896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1339557896.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1160915095.pdb -s /var/tmp/to_scwrl_1160915095.seq -o /var/tmp/from_scwrl_1160915095.pdb > /var/tmp/scwrl_1160915095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160915095.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_883022731.pdb -s /var/tmp/to_scwrl_883022731.seq -o /var/tmp/from_scwrl_883022731.pdb > /var/tmp/scwrl_883022731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_883022731.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1455412704.pdb -s /var/tmp/to_scwrl_1455412704.seq -o /var/tmp/from_scwrl_1455412704.pdb > /var/tmp/scwrl_1455412704.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455412704.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1690724759.pdb -s /var/tmp/to_scwrl_1690724759.seq -o /var/tmp/from_scwrl_1690724759.pdb > /var/tmp/scwrl_1690724759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690724759.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1997393815.pdb -s /var/tmp/to_scwrl_1997393815.seq -o /var/tmp/from_scwrl_1997393815.pdb > /var/tmp/scwrl_1997393815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1997393815.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)P106.CA and (T0287)F110.CA only 0.0000000e+00 apart, marking (T0287)F110.CA as missing WARNING: atoms too close: (T0287)I120.CA and (T0287)P123.CA only 0.0000000e+00 apart, marking (T0287)P123.CA as missing WARNING: atoms too close: (T0287)F121.CA and (T0287)K132.CA only 0.0000000e+00 apart, marking (T0287)K132.CA as missing WARNING: atoms too close: (T0287)L122.CA and (T0287)M133.CA only 0.0000000e+00 apart, marking (T0287)M133.CA as missing WARNING: atoms too close: (T0287)T147.CA and (T0287)E160.CA only 0.0000000e+00 apart, marking (T0287)E160.CA as missing WARNING: atoms too close: (T0287)N148.CA and (T0287)E161.CA only 0.0000000e+00 apart, marking (T0287)E161.CA as missing WARNING: atoms too close: (T0287)M157.CA and (T0287)V162.CA only 0.0000000e+00 apart, marking (T0287)V162.CA as missing WARNING: atoms too close: (T0287)T158.CA and (T0287)N163.CA only 0.0000000e+00 apart, marking (T0287)N163.CA as missing WARNING: atoms too close: (T0287)D159.CA and (T0287)A166.CA only 0.0000000e+00 apart, marking (T0287)A166.CA as missing WARNING: atoms too close: (T0287)F164.CA and (T0287)I171.CA only 0.0000000e+00 apart, marking (T0287)I171.CA as missing WARNING: atoms too close: (T0287)Y165.CA and (T0287)E172.CA only 0.0000000e+00 apart, marking (T0287)E172.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1415969694.pdb -s /var/tmp/to_scwrl_1415969694.seq -o /var/tmp/from_scwrl_1415969694.pdb > /var/tmp/scwrl_1415969694.log Error: Couldn't open file /var/tmp/from_scwrl_1415969694.pdb or /var/tmp/from_scwrl_1415969694.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1415969694_b.pdb or decoys//var/tmp/from_scwrl_1415969694_b.pdb.gz for input Trying /var/tmp/from_scwrl_1415969694_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1415969694_b.pdb or /var/tmp/from_scwrl_1415969694_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1415969694_a.pdb or decoys//var/tmp/from_scwrl_1415969694_a.pdb.gz for input Trying /var/tmp/from_scwrl_1415969694_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1415969694_a.pdb or /var/tmp/from_scwrl_1415969694_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1415969694.pdb or /var/tmp/from_scwrl_1415969694_b.pdb or /var/tmp/from_scwrl_1415969694_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)L32.CA and (T0287)N33.CA only 0.0000000e+00 apart, marking (T0287)N33.CA as missing WARNING: atoms too close: (T0287)M138.CA and (T0287)L154.CA only 0.0000000e+00 apart, marking (T0287)L154.CA as missing WARNING: atoms too close: (T0287)D139.CA and (T0287)D159.CA only 0.0000000e+00 apart, marking (T0287)D159.CA as missing WARNING: atoms too close: (T0287)F164.CA and (T0287)N167.CA only 0.0000000e+00 apart, marking (T0287)N167.CA as missing WARNING: atoms too close: (T0287)Y165.CA and (T0287)L168.CA only 0.0000000e+00 apart, marking (T0287)L168.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_180399225.pdb -s /var/tmp/to_scwrl_180399225.seq -o /var/tmp/from_scwrl_180399225.pdb > /var/tmp/scwrl_180399225.log Error: Couldn't open file /var/tmp/from_scwrl_180399225.pdb or /var/tmp/from_scwrl_180399225.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_180399225_b.pdb or decoys//var/tmp/from_scwrl_180399225_b.pdb.gz for input Trying /var/tmp/from_scwrl_180399225_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_180399225_b.pdb or /var/tmp/from_scwrl_180399225_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_180399225_a.pdb or decoys//var/tmp/from_scwrl_180399225_a.pdb.gz for input Trying /var/tmp/from_scwrl_180399225_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_180399225_a.pdb or /var/tmp/from_scwrl_180399225_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_180399225.pdb or /var/tmp/from_scwrl_180399225_b.pdb or /var/tmp/from_scwrl_180399225_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)D71.CA and (T0287)Y72.CA only 0.0000000e+00 apart, marking (T0287)Y72.CA as missing WARNING: atoms too close: (T0287)L90.CA and (T0287)E97.CA only 0.0000000e+00 apart, marking (T0287)E97.CA as missing WARNING: atoms too close: (T0287)L91.CA and (T0287)L98.CA only 0.0000000e+00 apart, marking (T0287)L98.CA as missing WARNING: atoms too close: (T0287)E92.CA and (T0287)L99.CA only 0.0000000e+00 apart, marking (T0287)L99.CA as missing WARNING: atoms too close: (T0287)S93.CA and (T0287)H100.CA only 0.0000000e+00 apart, marking (T0287)H100.CA as missing WARNING: atoms too close: (T0287)F185.CA and (T0287)D186.CA only 0.0000000e+00 apart, marking (T0287)D186.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2026371665.pdb -s /var/tmp/to_scwrl_2026371665.seq -o /var/tmp/from_scwrl_2026371665.pdb > /var/tmp/scwrl_2026371665.log Error: Couldn't open file /var/tmp/from_scwrl_2026371665.pdb or /var/tmp/from_scwrl_2026371665.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2026371665_b.pdb or decoys//var/tmp/from_scwrl_2026371665_b.pdb.gz for input Trying /var/tmp/from_scwrl_2026371665_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_2026371665_b.pdb or /var/tmp/from_scwrl_2026371665_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2026371665_a.pdb or decoys//var/tmp/from_scwrl_2026371665_a.pdb.gz for input Trying /var/tmp/from_scwrl_2026371665_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_2026371665_a.pdb or /var/tmp/from_scwrl_2026371665_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_2026371665.pdb or /var/tmp/from_scwrl_2026371665_b.pdb or /var/tmp/from_scwrl_2026371665_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_148543035.pdb -s /var/tmp/to_scwrl_148543035.seq -o /var/tmp/from_scwrl_148543035.pdb > /var/tmp/scwrl_148543035.log Error: Couldn't open file /var/tmp/from_scwrl_148543035.pdb or /var/tmp/from_scwrl_148543035.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_148543035_b.pdb or decoys//var/tmp/from_scwrl_148543035_b.pdb.gz for input Trying /var/tmp/from_scwrl_148543035_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_148543035_b.pdb or /var/tmp/from_scwrl_148543035_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_148543035_a.pdb or decoys//var/tmp/from_scwrl_148543035_a.pdb.gz for input Trying /var/tmp/from_scwrl_148543035_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_148543035_a.pdb or /var/tmp/from_scwrl_148543035_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_148543035.pdb or /var/tmp/from_scwrl_148543035_b.pdb or /var/tmp/from_scwrl_148543035_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_385458222.pdb -s /var/tmp/to_scwrl_385458222.seq -o /var/tmp/from_scwrl_385458222.pdb > /var/tmp/scwrl_385458222.log Error: Couldn't open file /var/tmp/from_scwrl_385458222.pdb or /var/tmp/from_scwrl_385458222.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_385458222_b.pdb or decoys//var/tmp/from_scwrl_385458222_b.pdb.gz for input Trying /var/tmp/from_scwrl_385458222_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_385458222_b.pdb or /var/tmp/from_scwrl_385458222_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_385458222_a.pdb or decoys//var/tmp/from_scwrl_385458222_a.pdb.gz for input Trying /var/tmp/from_scwrl_385458222_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_385458222_a.pdb or /var/tmp/from_scwrl_385458222_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_385458222.pdb or /var/tmp/from_scwrl_385458222_b.pdb or /var/tmp/from_scwrl_385458222_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)P106.CA and (T0287)F110.CA only 0.0000000e+00 apart, marking (T0287)F110.CA as missing WARNING: atoms too close: (T0287)I120.CA and (T0287)P123.CA only 0.0000000e+00 apart, marking (T0287)P123.CA as missing WARNING: atoms too close: (T0287)F121.CA and (T0287)K132.CA only 0.0000000e+00 apart, marking (T0287)K132.CA as missing WARNING: atoms too close: (T0287)L122.CA and (T0287)M133.CA only 0.0000000e+00 apart, marking (T0287)M133.CA as missing WARNING: atoms too close: (T0287)T147.CA and (T0287)E160.CA only 0.0000000e+00 apart, marking (T0287)E160.CA as missing WARNING: atoms too close: (T0287)N148.N and (T0287)E161.N only 0.0000000e+00 apart, marking (T0287)E161.N as missing WARNING: atoms too close: (T0287)N148.CA and (T0287)E161.CA only 0.0000000e+00 apart, marking (T0287)E161.CA as missing WARNING: atoms too close: (T0287)N148.CB and (T0287)E161.CB only 0.0000000e+00 apart, marking (T0287)E161.CB as missing WARNING: atoms too close: (T0287)N148.C and (T0287)E161.C only 0.0000000e+00 apart, marking (T0287)E161.C as missing WARNING: atoms too close: (T0287)M157.CA and (T0287)V162.CA only 0.0000000e+00 apart, marking (T0287)V162.CA as missing WARNING: atoms too close: (T0287)T158.CA and (T0287)N163.CA only 0.0000000e+00 apart, marking (T0287)N163.CA as missing WARNING: atoms too close: (T0287)D159.CA and (T0287)A166.CA only 0.0000000e+00 apart, marking (T0287)D159.CA as missing WARNING: atoms too close: (T0287)F164.CA and (T0287)I171.CA only 0.0000000e+00 apart, marking (T0287)I171.CA as missing WARNING: atoms too close: (T0287)Y165.CA and (T0287)E172.CA only 0.0000000e+00 apart, marking (T0287)E172.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1324156489.pdb -s /var/tmp/to_scwrl_1324156489.seq -o /var/tmp/from_scwrl_1324156489.pdb > /var/tmp/scwrl_1324156489.log Error: Couldn't open file /var/tmp/from_scwrl_1324156489.pdb or /var/tmp/from_scwrl_1324156489.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1324156489_b.pdb or decoys//var/tmp/from_scwrl_1324156489_b.pdb.gz for input Trying /var/tmp/from_scwrl_1324156489_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1324156489_b.pdb or /var/tmp/from_scwrl_1324156489_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1324156489_a.pdb or decoys//var/tmp/from_scwrl_1324156489_a.pdb.gz for input Trying /var/tmp/from_scwrl_1324156489_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1324156489_a.pdb or /var/tmp/from_scwrl_1324156489_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1324156489.pdb or /var/tmp/from_scwrl_1324156489_b.pdb or /var/tmp/from_scwrl_1324156489_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_953990376.pdb -s /var/tmp/to_scwrl_953990376.seq -o /var/tmp/from_scwrl_953990376.pdb > /var/tmp/scwrl_953990376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953990376.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1002213290.pdb -s /var/tmp/to_scwrl_1002213290.seq -o /var/tmp/from_scwrl_1002213290.pdb > /var/tmp/scwrl_1002213290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1002213290.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_2036870918.pdb -s /var/tmp/to_scwrl_2036870918.seq -o /var/tmp/from_scwrl_2036870918.pdb > /var/tmp/scwrl_2036870918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036870918.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1451905110.pdb -s /var/tmp/to_scwrl_1451905110.seq -o /var/tmp/from_scwrl_1451905110.pdb > /var/tmp/scwrl_1451905110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451905110.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1836097800.pdb -s /var/tmp/to_scwrl_1836097800.seq -o /var/tmp/from_scwrl_1836097800.pdb > /var/tmp/scwrl_1836097800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836097800.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1500541377.pdb -s /var/tmp/to_scwrl_1500541377.seq -o /var/tmp/from_scwrl_1500541377.pdb > /var/tmp/scwrl_1500541377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500541377.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1672917106.pdb -s /var/tmp/to_scwrl_1672917106.seq -o /var/tmp/from_scwrl_1672917106.pdb > /var/tmp/scwrl_1672917106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1672917106.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1214598616.pdb -s /var/tmp/to_scwrl_1214598616.seq -o /var/tmp/from_scwrl_1214598616.pdb > /var/tmp/scwrl_1214598616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214598616.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_17504599.pdb -s /var/tmp/to_scwrl_17504599.seq -o /var/tmp/from_scwrl_17504599.pdb > /var/tmp/scwrl_17504599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_17504599.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1452644935.pdb -s /var/tmp/to_scwrl_1452644935.seq -o /var/tmp/from_scwrl_1452644935.pdb > /var/tmp/scwrl_1452644935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452644935.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_67287006.pdb -s /var/tmp/to_scwrl_67287006.seq -o /var/tmp/from_scwrl_67287006.pdb > /var/tmp/scwrl_67287006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_67287006.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_727958809.pdb -s /var/tmp/to_scwrl_727958809.seq -o /var/tmp/from_scwrl_727958809.pdb > /var/tmp/scwrl_727958809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_727958809.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1539025575.pdb -s /var/tmp/to_scwrl_1539025575.seq -o /var/tmp/from_scwrl_1539025575.pdb > /var/tmp/scwrl_1539025575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1539025575.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1537867964.pdb -s /var/tmp/to_scwrl_1537867964.seq -o /var/tmp/from_scwrl_1537867964.pdb > /var/tmp/scwrl_1537867964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537867964.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1214788536.pdb -s /var/tmp/to_scwrl_1214788536.seq -o /var/tmp/from_scwrl_1214788536.pdb > /var/tmp/scwrl_1214788536.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214788536.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1465993103.pdb -s /var/tmp/to_scwrl_1465993103.seq -o /var/tmp/from_scwrl_1465993103.pdb > /var/tmp/scwrl_1465993103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1465993103.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_869862552.pdb -s /var/tmp/to_scwrl_869862552.seq -o /var/tmp/from_scwrl_869862552.pdb > /var/tmp/scwrl_869862552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_869862552.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)K38.O and (T0287)K39.N only 0.0000000e+00 apart, marking (T0287)K39.N as missing WARNING: atoms too close: (T0287)M130.O and (T0287)F131.N only 0.0000000e+00 apart, marking (T0287)F131.N as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_133983816.pdb -s /var/tmp/to_scwrl_133983816.seq -o /var/tmp/from_scwrl_133983816.pdb > /var/tmp/scwrl_133983816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_133983816.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_41439314.pdb -s /var/tmp/to_scwrl_41439314.seq -o /var/tmp/from_scwrl_41439314.pdb > /var/tmp/scwrl_41439314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_41439314.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_61936801.pdb -s /var/tmp/to_scwrl_61936801.seq -o /var/tmp/from_scwrl_61936801.pdb > /var/tmp/scwrl_61936801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_61936801.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1294898911.pdb -s /var/tmp/to_scwrl_1294898911.seq -o /var/tmp/from_scwrl_1294898911.pdb > /var/tmp/scwrl_1294898911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1294898911.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_924462045.pdb -s /var/tmp/to_scwrl_924462045.seq -o /var/tmp/from_scwrl_924462045.pdb > /var/tmp/scwrl_924462045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_924462045.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1517349506.pdb -s /var/tmp/to_scwrl_1517349506.seq -o /var/tmp/from_scwrl_1517349506.pdb > /var/tmp/scwrl_1517349506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1517349506.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_838140025.pdb -s /var/tmp/to_scwrl_838140025.seq -o /var/tmp/from_scwrl_838140025.pdb > /var/tmp/scwrl_838140025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838140025.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_774372213.pdb -s /var/tmp/to_scwrl_774372213.seq -o /var/tmp/from_scwrl_774372213.pdb > /var/tmp/scwrl_774372213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_774372213.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_785835554.pdb -s /var/tmp/to_scwrl_785835554.seq -o /var/tmp/from_scwrl_785835554.pdb > /var/tmp/scwrl_785835554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_785835554.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1018539250.pdb -s /var/tmp/to_scwrl_1018539250.seq -o /var/tmp/from_scwrl_1018539250.pdb > /var/tmp/scwrl_1018539250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1018539250.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_653260231.pdb -s /var/tmp/to_scwrl_653260231.seq -o /var/tmp/from_scwrl_653260231.pdb > /var/tmp/scwrl_653260231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_653260231.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 WARNING: atom 674 has residue number 1 < previous residue 195 in servers/mGen-3D_TS1.pdb.gz # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_934378589.pdb -s /var/tmp/to_scwrl_934378589.seq -o /var/tmp/from_scwrl_934378589.pdb > /var/tmp/scwrl_934378589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_934378589.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1403997471.pdb -s /var/tmp/to_scwrl_1403997471.seq -o /var/tmp/from_scwrl_1403997471.pdb > /var/tmp/scwrl_1403997471.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1403997471.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1977416721.pdb -s /var/tmp/to_scwrl_1977416721.seq -o /var/tmp/from_scwrl_1977416721.pdb > /var/tmp/scwrl_1977416721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977416721.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1888368965.pdb -s /var/tmp/to_scwrl_1888368965.seq -o /var/tmp/from_scwrl_1888368965.pdb > /var/tmp/scwrl_1888368965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888368965.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_258727114.pdb -s /var/tmp/to_scwrl_258727114.seq -o /var/tmp/from_scwrl_258727114.pdb > /var/tmp/scwrl_258727114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_258727114.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1866803992.pdb -s /var/tmp/to_scwrl_1866803992.seq -o /var/tmp/from_scwrl_1866803992.pdb > /var/tmp/scwrl_1866803992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1866803992.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 180 ; scwrl3 -i /var/tmp/to_scwrl_1192790428.pdb -s /var/tmp/to_scwrl_1192790428.seq -o /var/tmp/from_scwrl_1192790428.pdb > /var/tmp/scwrl_1192790428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192790428.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 40.6798 sec, elapsed time= 660.524 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 272.851 shub_TS1 costs 0 real_cost = 270.941 nFOLD_TS5-scwrl costs 0 real_cost = 395.445 nFOLD_TS5 costs 0 real_cost = 470.048 nFOLD_TS4-scwrl costs 0 real_cost = 367.392 nFOLD_TS4 costs 0 real_cost = 436.943 nFOLD_TS3-scwrl costs 0 real_cost = 306.755 nFOLD_TS3 costs 0 real_cost = 406.722 nFOLD_TS2-scwrl costs 0 real_cost = 282.735 nFOLD_TS2 costs 0 real_cost = 378.602 nFOLD_TS1-scwrl costs 0 real_cost = 328.792 nFOLD_TS1 costs 0 real_cost = 422.949 mGen-3D_TS1-scwrl costs 0 real_cost = 353.123 mGen-3D_TS1 costs 0 real_cost = 427.402 keasar-server_TS5-scwrl costs 0 real_cost = 252.05 keasar-server_TS5 costs 0 real_cost = 254.271 keasar-server_TS4-scwrl costs 0 real_cost = 232.642 keasar-server_TS4 costs 0 real_cost = 235.82 keasar-server_TS3-scwrl costs 0 real_cost = 167.662 keasar-server_TS3 costs 0 real_cost = 168.573 keasar-server_TS2-scwrl costs 0 real_cost = 276.671 keasar-server_TS2 costs 0 real_cost = 272.241 keasar-server_TS1-scwrl costs 0 real_cost = 262.301 keasar-server_TS1 costs 0 real_cost = 261.461 karypis.srv_TS5-scwrl costs 0 real_cost = 286.254 karypis.srv_TS5 costs 0 real_cost = 287.665 karypis.srv_TS4-scwrl costs 0 real_cost = 239.553 karypis.srv_TS4 costs 0 real_cost = 236.699 karypis.srv_TS3-scwrl costs 0 real_cost = 325.988 karypis.srv_TS3 costs 0 real_cost = 322.686 karypis.srv_TS2-scwrl costs 0 real_cost = 350.916 karypis.srv_TS2 costs 0 real_cost = 347.575 karypis.srv_TS1-scwrl costs 0 real_cost = 338.706 karypis.srv_TS1 costs 0 real_cost = 336.59 karypis.srv.4_TS1-scwrl costs 0 real_cost = 315.073 karypis.srv.4_TS1 costs 0 real_cost = 316.146 karypis.srv.2_TS5-scwrl costs 0 real_cost = 268.55 karypis.srv.2_TS5 costs 0 real_cost = 268.55 karypis.srv.2_TS4-scwrl costs 0 real_cost = 287.254 karypis.srv.2_TS4 costs 0 real_cost = 287.254 karypis.srv.2_TS3-scwrl costs 0 real_cost = 264.874 karypis.srv.2_TS3 costs 0 real_cost = 264.844 karypis.srv.2_TS2-scwrl costs 0 real_cost = 311.149 karypis.srv.2_TS2 costs 0 real_cost = 311.135 karypis.srv.2_TS1-scwrl costs 0 real_cost = 269.238 karypis.srv.2_TS1 costs 0 real_cost = 269.238 beautshotbase_TS1-scwrl costs 0 real_cost = 246.482 beautshotbase_TS1 costs 0 real_cost = 248.287 beautshot_TS1-scwrl costs 0 real_cost = 241.74 beautshot_TS1 costs 0 real_cost = 249.194 Zhang-Server_TS5-scwrl costs 0 real_cost = 172.6 Zhang-Server_TS5 costs 0 real_cost = 181.253 Zhang-Server_TS4-scwrl costs 0 real_cost = 199.245 Zhang-Server_TS4 costs 0 real_cost = 202.347 Zhang-Server_TS3-scwrl costs 0 real_cost = 223.949 Zhang-Server_TS3 costs 0 real_cost = 228.367 Zhang-Server_TS2-scwrl costs 0 real_cost = 126.633 Zhang-Server_TS2 costs 0 real_cost = 135.835 Zhang-Server_TS1-scwrl costs 0 real_cost = 181.47 Zhang-Server_TS1 costs 0 real_cost = 187.335 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 302.869 UNI-EID_sfst_AL5 costs 0 real_cost = 418.567 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 313.567 UNI-EID_sfst_AL4 costs 0 real_cost = 412.995 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 340.356 UNI-EID_sfst_AL3 costs 0 real_cost = 431.081 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 269.357 UNI-EID_sfst_AL2 costs 0 real_cost = 412.795 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 327.032 UNI-EID_sfst_AL1 costs 0 real_cost = 457.451 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 404.317 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 542.299 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 538.486 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 533.839 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 544.73 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 551.898 SPARKS2_TS5-scwrl costs 0 real_cost = 224.121 SPARKS2_TS5 costs 0 real_cost = 231.107 SPARKS2_TS4-scwrl costs 0 real_cost = 286.321 SPARKS2_TS4 costs 0 real_cost = 282.62 SPARKS2_TS3-scwrl costs 0 real_cost = 241.858 SPARKS2_TS3 costs 0 real_cost = 249.19 SPARKS2_TS2-scwrl costs 0 real_cost = 240.21 SPARKS2_TS2 costs 0 real_cost = 244.314 SPARKS2_TS1-scwrl costs 0 real_cost = 173.923 SPARKS2_TS1 costs 0 real_cost = 186.489 SP4_TS5-scwrl costs 0 real_cost = 252.057 SP4_TS5 costs 0 real_cost = 255.08 SP4_TS4-scwrl costs 0 real_cost = 241.467 SP4_TS4 costs 0 real_cost = 238.248 SP4_TS3-scwrl costs 0 real_cost = 183.597 SP4_TS3 costs 0 real_cost = 193.512 SP4_TS2-scwrl costs 0 real_cost = 273.008 SP4_TS2 costs 0 real_cost = 278.249 SP4_TS1-scwrl costs 0 real_cost = 244.826 SP4_TS1 costs 0 real_cost = 249.565 SP3_TS5-scwrl costs 0 real_cost = 265.301 SP3_TS5 costs 0 real_cost = 261.356 SP3_TS4-scwrl costs 0 real_cost = 175.338 SP3_TS4 costs 0 real_cost = 181.453 SP3_TS3-scwrl costs 0 real_cost = 277.841 SP3_TS3 costs 0 real_cost = 280.994 SP3_TS2-scwrl costs 0 real_cost = 249.389 SP3_TS2 costs 0 real_cost = 248.192 SP3_TS1-scwrl costs 0 real_cost = 243.834 SP3_TS1 costs 0 real_cost = 250.803 SAM_T06_server_TS5-scwrl costs 0 real_cost = 472.343 SAM_T06_server_TS5 costs 0 real_cost = 461.238 SAM_T06_server_TS4-scwrl costs 0 real_cost = 435.403 SAM_T06_server_TS4 costs 0 real_cost = 412.719 SAM_T06_server_TS3-scwrl costs 0 real_cost = 359.322 SAM_T06_server_TS3 costs 0 real_cost = 342.462 SAM_T06_server_TS2-scwrl costs 0 real_cost = 377.628 SAM_T06_server_TS2 costs 0 real_cost = 355.897 SAM_T06_server_TS1-scwrl costs 0 real_cost = 295.138 SAM_T06_server_TS1 costs 0 real_cost = 295.875 SAM-T02_AL5-scwrl costs 0 real_cost = 406.633 SAM-T02_AL5 costs 0 real_cost = 484.147 SAM-T02_AL4-scwrl costs 0 real_cost = 610.143 SAM-T02_AL4 costs 0 real_cost = 648.001 SAM-T02_AL3-scwrl costs 0 real_cost = 483.343 SAM-T02_AL3 costs 0 real_cost = 536.603 SAM-T02_AL2-scwrl costs 0 real_cost = 364.714 SAM-T02_AL2 costs 0 real_cost = 415.831 SAM-T02_AL1-scwrl costs 0 real_cost = 513.789 SAM-T02_AL1 costs 0 real_cost = 573.061 ROKKY_TS2-scwrl costs 0 real_cost = 477.037 ROKKY_TS2 costs 0 real_cost = 477.037 ROKKY_TS1-scwrl costs 0 real_cost = 472.277 ROKKY_TS1 costs 0 real_cost = 472.277 ROBETTA_TS5-scwrl costs 0 real_cost = 437.307 ROBETTA_TS5 costs 0 real_cost = 437.306 ROBETTA_TS4-scwrl costs 0 real_cost = 396.039 ROBETTA_TS4 costs 0 real_cost = 396.039 ROBETTA_TS3-scwrl costs 0 real_cost = 406.295 ROBETTA_TS3 costs 0 real_cost = 406.296 ROBETTA_TS2-scwrl costs 0 real_cost = 394.184 ROBETTA_TS2 costs 0 real_cost = 394.184 ROBETTA_TS1-scwrl costs 0 real_cost = 394.993 ROBETTA_TS1 costs 0 real_cost = 394.993 RAPTOR_TS5-scwrl costs 0 real_cost = 280.294 RAPTOR_TS5 costs 0 real_cost = 272.536 RAPTOR_TS4-scwrl costs 0 real_cost = 269.659 RAPTOR_TS4 costs 0 real_cost = 279.641 RAPTOR_TS3-scwrl costs 0 real_cost = 260.444 RAPTOR_TS3 costs 0 real_cost = 263.945 RAPTOR_TS2-scwrl costs 0 real_cost = 207.066 RAPTOR_TS2 costs 0 real_cost = 210.94 RAPTOR_TS1-scwrl costs 0 real_cost = 263.594 RAPTOR_TS1 costs 0 real_cost = 273.975 RAPTORESS_TS5-scwrl costs 0 real_cost = 212.332 RAPTORESS_TS5 costs 0 real_cost = 214.219 RAPTORESS_TS4-scwrl costs 0 real_cost = 282.087 RAPTORESS_TS4 costs 0 real_cost = 283.305 RAPTORESS_TS3-scwrl costs 0 real_cost = 288.414 RAPTORESS_TS3 costs 0 real_cost = 297.834 RAPTORESS_TS2-scwrl costs 0 real_cost = 282.151 RAPTORESS_TS2 costs 0 real_cost = 290.582 RAPTORESS_TS1-scwrl costs 0 real_cost = 325.65 RAPTORESS_TS1 costs 0 real_cost = 329.017 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 190.173 RAPTOR-ACE_TS5 costs 0 real_cost = 192.057 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 244.042 RAPTOR-ACE_TS4 costs 0 real_cost = 254.171 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 175.338 RAPTOR-ACE_TS3 costs 0 real_cost = 181.453 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 224.061 RAPTOR-ACE_TS2 costs 0 real_cost = 221.738 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 216.413 RAPTOR-ACE_TS1 costs 0 real_cost = 231.258 Pmodeller6_TS5-scwrl costs 0 real_cost = 229.044 Pmodeller6_TS5 costs 0 real_cost = 228.822 Pmodeller6_TS4-scwrl costs 0 real_cost = 245.647 Pmodeller6_TS4 costs 0 real_cost = 242.657 Pmodeller6_TS3-scwrl costs 0 real_cost = 198.242 Pmodeller6_TS3 costs 0 real_cost = 198.257 Pmodeller6_TS2-scwrl costs 0 real_cost = 173.036 Pmodeller6_TS2 costs 0 real_cost = 173.036 Pmodeller6_TS1-scwrl costs 0 real_cost = 155.013 Pmodeller6_TS1 costs 0 real_cost = 153.413 Phyre-2_TS5-scwrl costs 0 real_cost = 333.607 Phyre-2_TS5 costs 0 real_cost = 314.28 Phyre-2_TS4-scwrl costs 0 real_cost = 332.195 Phyre-2_TS4 costs 0 real_cost = 306.643 Phyre-2_TS3-scwrl costs 0 real_cost = 345.421 Phyre-2_TS3 costs 0 real_cost = 319.734 Phyre-2_TS2-scwrl costs 0 real_cost = 322.765 Phyre-2_TS2 costs 0 real_cost = 303.446 Phyre-2_TS1-scwrl costs 0 real_cost = 273.636 Phyre-2_TS1 costs 0 real_cost = 279 Phyre-1_TS1-scwrl costs 0 real_cost = 398.482 Phyre-1_TS1 costs 0 real_cost = 383.814 Pcons6_TS5-scwrl costs 0 real_cost = 173.036 Pcons6_TS5 costs 0 real_cost = 173.036 Pcons6_TS4-scwrl costs 0 real_cost = 345.301 Pcons6_TS4 costs 0 real_cost = 342.447 Pcons6_TS3-scwrl costs 0 real_cost = 409.532 Pcons6_TS3 costs 0 real_cost = 408.025 Pcons6_TS2-scwrl costs 0 real_cost = 227.097 Pcons6_TS1-scwrl costs 0 real_cost = 299.543 Pcons6_TS1 costs 0 real_cost = 297.445 PROTINFO_TS5-scwrl costs 0 real_cost = 325.665 PROTINFO_TS5 costs 0 real_cost = 329.298 PROTINFO_TS4-scwrl costs 0 real_cost = 340.611 PROTINFO_TS4 costs 0 real_cost = 340.423 PROTINFO_TS3-scwrl costs 0 real_cost = 258.203 PROTINFO_TS3 costs 0 real_cost = 260.688 PROTINFO_TS2-scwrl costs 0 real_cost = 255.778 PROTINFO_TS2 costs 0 real_cost = 255.662 PROTINFO_TS1-scwrl costs 0 real_cost = 262.451 PROTINFO_TS1 costs 0 real_cost = 254.878 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 247.04 PROTINFO-AB_TS5 costs 0 real_cost = 249.474 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 225.579 PROTINFO-AB_TS4 costs 0 real_cost = 225.31 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 232.257 PROTINFO-AB_TS3 costs 0 real_cost = 237.674 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 230.038 PROTINFO-AB_TS2 costs 0 real_cost = 235.88 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 223.121 PROTINFO-AB_TS1 costs 0 real_cost = 226.733 POMYSL_TS5-scwrl costs 0 real_cost = 306.996 POMYSL_TS5 costs 0 real_cost = 320.548 POMYSL_TS4-scwrl costs 0 real_cost = 296.638 POMYSL_TS4 costs 0 real_cost = 307.332 POMYSL_TS3-scwrl costs 0 real_cost = 299.474 POMYSL_TS3 costs 0 real_cost = 304.373 POMYSL_TS2-scwrl costs 0 real_cost = 293.424 POMYSL_TS2 costs 0 real_cost = 304.094 POMYSL_TS1-scwrl costs 0 real_cost = 282.042 POMYSL_TS1 costs 0 real_cost = 296.756 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 258.218 NN_PUT_lab_TS1 costs 0 real_cost = 262.225 MetaTasser_TS5-scwrl costs 0 real_cost = 186.031 MetaTasser_TS5 costs 0 real_cost = 185.901 MetaTasser_TS4-scwrl costs 0 real_cost = 179.951 MetaTasser_TS4 costs 0 real_cost = 178.484 MetaTasser_TS3-scwrl costs 0 real_cost = 168.191 MetaTasser_TS3 costs 0 real_cost = 168.607 MetaTasser_TS2-scwrl costs 0 real_cost = 210.648 MetaTasser_TS2 costs 0 real_cost = 212.619 MetaTasser_TS1-scwrl costs 0 real_cost = 211.849 MetaTasser_TS1 costs 0 real_cost = 207.527 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 323.422 Ma-OPUS-server_TS5 costs 0 real_cost = 334.394 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 265.72 Ma-OPUS-server_TS4 costs 0 real_cost = 267.812 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 326.627 Ma-OPUS-server_TS3 costs 0 real_cost = 326.229 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 311.14 Ma-OPUS-server_TS2 costs 0 real_cost = 311.863 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 327.285 Ma-OPUS-server_TS1 costs 0 real_cost = 326.847 MIG_FROST_FLEX_AL1-scwrl costs 0 real_cost = 292.426 MIG_FROST_FLEX_AL1 costs 0 real_cost = 292.426 MIG_FROST_AL1 costs 0 real_cost = 292.417 LOOPP_TS5 costs 0 real_cost = 303.35 LOOPP_TS4-scwrl costs 0 real_cost = 333.292 LOOPP_TS4 costs 0 real_cost = 330.765 LOOPP_TS3-scwrl costs 0 real_cost = 255.101 LOOPP_TS3 costs 0 real_cost = 258.148 LOOPP_TS2-scwrl costs 0 real_cost = 235.154 LOOPP_TS2 costs 0 real_cost = 235.09 LOOPP_TS1-scwrl costs 0 real_cost = 258.218 LOOPP_TS1 costs 0 real_cost = 262.225 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 415.011 Huber-Torda-Server_TS5 costs 0 real_cost = 470.718 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 364.606 Huber-Torda-Server_TS4 costs 0 real_cost = 446.844 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 405.588 Huber-Torda-Server_TS3 costs 0 real_cost = 472.553 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 427.067 Huber-Torda-Server_TS2 costs 0 real_cost = 492.309 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 312.765 Huber-Torda-Server_TS1 costs 0 real_cost = 397.167 HHpred3_TS1-scwrl costs 0 real_cost = 281.741 HHpred3_TS1 costs 0 real_cost = 279.605 HHpred2_TS1-scwrl costs 0 real_cost = 281.741 HHpred2_TS1 costs 0 real_cost = 279.605 HHpred1_TS1-scwrl costs 0 real_cost = 281.741 HHpred1_TS1 costs 0 real_cost = 279.605 Frankenstein_TS3-scwrl costs 0 real_cost = 408.111 Frankenstein_TS3 costs 0 real_cost = 408.504 Frankenstein_TS2-scwrl costs 0 real_cost = 408.111 Frankenstein_TS2 costs 0 real_cost = 408.504 Frankenstein_TS1-scwrl costs 0 real_cost = 405.498 Frankenstein_TS1 costs 0 real_cost = 405.99 FUNCTION_TS5-scwrl costs 0 real_cost = 280.714 FUNCTION_TS5 costs 0 real_cost = 282.977 FUNCTION_TS4-scwrl costs 0 real_cost = 236.611 FUNCTION_TS4 costs 0 real_cost = 241.018 FUNCTION_TS3-scwrl costs 0 real_cost = 238.055 FUNCTION_TS3 costs 0 real_cost = 237.529 FUNCTION_TS2-scwrl costs 0 real_cost = 240.358 FUNCTION_TS2 costs 0 real_cost = 247.877 FUNCTION_TS1-scwrl costs 0 real_cost = 187.207 FUNCTION_TS1 costs 0 real_cost = 187.104 FUGUE_AL5-scwrl costs 0 real_cost = 322.056 FUGUE_AL5 costs 0 real_cost = 466.792 FUGUE_AL4-scwrl costs 0 real_cost = 316.979 FUGUE_AL4 costs 0 real_cost = 461.71 FUGUE_AL3-scwrl costs 0 real_cost = 461.66 FUGUE_AL3 costs 0 real_cost = 514.452 FUGUE_AL2-scwrl costs 0 real_cost = 508.645 FUGUE_AL2 costs 0 real_cost = 510.76 FUGUE_AL1-scwrl costs 0 real_cost = 279.575 FUGUE_AL1 costs 0 real_cost = 437.561 FUGMOD_TS5-scwrl costs 0 real_cost = 285.281 FUGMOD_TS5 costs 0 real_cost = 287.117 FUGMOD_TS4-scwrl costs 0 real_cost = 278.062 FUGMOD_TS4 costs 0 real_cost = 279.35 FUGMOD_TS3-scwrl costs 0 real_cost = 461.086 FUGMOD_TS3 costs 0 real_cost = 463.632 FUGMOD_TS2-scwrl costs 0 real_cost = 499.371 FUGMOD_TS2 costs 0 real_cost = 486.2 FUGMOD_TS1-scwrl costs 0 real_cost = 243.974 FUGMOD_TS1 costs 0 real_cost = 243.847 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 348.556 FPSOLVER-SERVER_TS1 costs 0 real_cost = 355.58 FORTE2_AL5-scwrl costs 0 real_cost = 382.011 FORTE2_AL5 costs 0 real_cost = 515.711 FORTE2_AL4-scwrl costs 0 real_cost = 318.284 FORTE2_AL4 costs 0 real_cost = 456.681 FORTE2_AL3-scwrl costs 0 real_cost = 409.68 FORTE2_AL3 costs 0 real_cost = 519.784 FORTE2_AL2-scwrl costs 0 real_cost = 319.863 FORTE2_AL2 costs 0 real_cost = 481.02 FORTE2_AL1-scwrl costs 0 real_cost = 417.938 FORTE2_AL1 costs 0 real_cost = 497.903 FORTE1_AL5-scwrl costs 0 real_cost = 382.011 FORTE1_AL5 costs 0 real_cost = 515.711 FORTE1_AL4-scwrl costs 0 real_cost = 318.284 FORTE1_AL4 costs 0 real_cost = 456.681 FORTE1_AL3-scwrl costs 0 real_cost = 409.68 FORTE1_AL3 costs 0 real_cost = 519.784 FORTE1_AL2-scwrl costs 0 real_cost = 319.863 FORTE1_AL2 costs 0 real_cost = 481.02 FORTE1_AL1-scwrl costs 0 real_cost = 417.938 FORTE1_AL1 costs 0 real_cost = 497.903 FOLDpro_TS5-scwrl costs 0 real_cost = 257.835 FOLDpro_TS5 costs 0 real_cost = 260.987 FOLDpro_TS4-scwrl costs 0 real_cost = 267.955 FOLDpro_TS4 costs 0 real_cost = 268.849 FOLDpro_TS3-scwrl costs 0 real_cost = 272.448 FOLDpro_TS3 costs 0 real_cost = 270.728 FOLDpro_TS2-scwrl costs 0 real_cost = 236.431 FOLDpro_TS2 costs 0 real_cost = 247.059 FOLDpro_TS1-scwrl costs 0 real_cost = 256.644 FOLDpro_TS1 costs 0 real_cost = 263.401 FAMS_TS5-scwrl costs 0 real_cost = 267.885 FAMS_TS5 costs 0 real_cost = 270.521 FAMS_TS4-scwrl costs 0 real_cost = 243.314 FAMS_TS4 costs 0 real_cost = 250.778 FAMS_TS3-scwrl costs 0 real_cost = 231.787 FAMS_TS3 costs 0 real_cost = 244.234 FAMS_TS2-scwrl costs 0 real_cost = 247.983 FAMS_TS2 costs 0 real_cost = 259.539 FAMS_TS1-scwrl costs 0 real_cost = 229.514 FAMS_TS1 costs 0 real_cost = 223.594 FAMSD_TS5-scwrl costs 0 real_cost = 227.695 FAMSD_TS5 costs 0 real_cost = 234.609 FAMSD_TS4-scwrl costs 0 real_cost = 235.827 FAMSD_TS4 costs 0 real_cost = 239.73 FAMSD_TS3-scwrl costs 0 real_cost = 221.193 FAMSD_TS3 costs 0 real_cost = 225.912 FAMSD_TS2-scwrl costs 0 real_cost = 229.752 FAMSD_TS2 costs 0 real_cost = 233.876 FAMSD_TS1-scwrl costs 0 real_cost = 241.793 FAMSD_TS1 costs 0 real_cost = 241.073 Distill_TS5-scwrl costs 0 real_cost = 524.607 Distill_TS4-scwrl costs 0 real_cost = 520.463 Distill_TS3-scwrl costs 0 real_cost = 523.903 Distill_TS2-scwrl costs 0 real_cost = 520.457 Distill_TS1-scwrl costs 0 real_cost = 519.042 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 290.915 CaspIta-FOX_TS5 costs 0 real_cost = 286.102 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 357.839 CaspIta-FOX_TS4 costs 0 real_cost = 354.662 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 376.742 CaspIta-FOX_TS3 costs 0 real_cost = 372.554 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 252.577 CaspIta-FOX_TS2 costs 0 real_cost = 249.664 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 314.623 CaspIta-FOX_TS1 costs 0 real_cost = 313.773 CIRCLE_TS5-scwrl costs 0 real_cost = 221.193 CIRCLE_TS5 costs 0 real_cost = 225.912 CIRCLE_TS4-scwrl costs 0 real_cost = 229.752 CIRCLE_TS4 costs 0 real_cost = 233.876 CIRCLE_TS3-scwrl costs 0 real_cost = 222.249 CIRCLE_TS3 costs 0 real_cost = 227.582 CIRCLE_TS2-scwrl costs 0 real_cost = 241.793 CIRCLE_TS2 costs 0 real_cost = 241.073 CIRCLE_TS1-scwrl costs 0 real_cost = 236.108 CIRCLE_TS1 costs 0 real_cost = 243.576 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 168.017 Bilab-ENABLE_TS5 costs 0 real_cost = 167.358 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 178.604 Bilab-ENABLE_TS4 costs 0 real_cost = 178.599 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 185.277 Bilab-ENABLE_TS3 costs 0 real_cost = 185.268 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 155.349 Bilab-ENABLE_TS2 costs 0 real_cost = 156.379 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 158.876 Bilab-ENABLE_TS1 costs 0 real_cost = 158.86 BayesHH_TS1-scwrl costs 0 real_cost = 290.128 BayesHH_TS1 costs 0 real_cost = 300.865 ABIpro_TS5-scwrl costs 0 real_cost = 237.201 ABIpro_TS5 costs 0 real_cost = 237.194 ABIpro_TS4-scwrl costs 0 real_cost = 251.879 ABIpro_TS4 costs 0 real_cost = 251.879 ABIpro_TS3-scwrl costs 0 real_cost = 278.282 ABIpro_TS3 costs 0 real_cost = 278.281 ABIpro_TS2-scwrl costs 0 real_cost = 264.74 ABIpro_TS2 costs 0 real_cost = 264.754 ABIpro_TS1-scwrl costs 0 real_cost = 230.946 ABIpro_TS1 costs 0 real_cost = 230.949 3Dpro_TS5-scwrl costs 0 real_cost = 238.417 3Dpro_TS5 costs 0 real_cost = 245.691 3Dpro_TS4-scwrl costs 0 real_cost = 233.009 3Dpro_TS4 costs 0 real_cost = 241.875 3Dpro_TS3-scwrl costs 0 real_cost = 338.639 3Dpro_TS3 costs 0 real_cost = 339.991 3Dpro_TS2-scwrl costs 0 real_cost = 271.491 3Dpro_TS2 costs 0 real_cost = 279.591 3Dpro_TS1-scwrl costs 0 real_cost = 249.861 3Dpro_TS1 costs 0 real_cost = 256.39 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 279.489 3D-JIGSAW_TS5 costs 0 real_cost = 288.731 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 228.519 3D-JIGSAW_TS4 costs 0 real_cost = 233.766 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 296.332 3D-JIGSAW_TS3 costs 0 real_cost = 300.256 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 278.235 3D-JIGSAW_TS2 costs 0 real_cost = 283.737 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 251.363 3D-JIGSAW_TS1 costs 0 real_cost = 258.757 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 279.489 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 288.731 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 228.519 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 233.766 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 296.332 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 300.256 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 278.235 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 283.737 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 251.363 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 258.757 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 279.705 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 276.586 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 269 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 267.2 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 239.309 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 238.509 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 210.663 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 210.663 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 227.901 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 226.101 short.pdb.gz costs 0 real_cost = 259.448 robetta-model5.pdb.gz costs 0 real_cost = 437.306 robetta-model4.pdb.gz costs 0 real_cost = 396.039 robetta-model3.pdb.gz costs 0 real_cost = 406.296 robetta-model2.pdb.gz costs 0 real_cost = 394.184 robetta-model1.pdb.gz costs 0 real_cost = 394.993 first-T0287.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 290.036 first-T0287.try1-opt2.pdb.gz costs 0 real_cost = 291.942 first-T0287.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 294.518 first-T0287.try1-opt1.pdb.gz costs 0 real_cost = 295.465 first-T0287.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 294.848 T0287.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 299.337 T0287.try9-opt2.pdb.gz costs 0 real_cost = 298.481 T0287.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 293.974 T0287.try9-opt1.pdb.gz costs 0 real_cost = 294.858 T0287.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 293.983 T0287.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 294.306 T0287.try8-opt2.pdb.gz costs 0 real_cost = 296.786 T0287.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 295.419 T0287.try8-opt1.pdb.gz costs 0 real_cost = 293.496 T0287.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 292.802 T0287.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 300.759 T0287.try7-opt2.pdb.gz costs 0 real_cost = 301.611 T0287.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 299.77 T0287.try7-opt1.pdb.gz costs 0 real_cost = 300.44 T0287.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 299.674 T0287.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 301.152 T0287.try6-opt2.pdb.gz costs 0 real_cost = 301.721 T0287.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 297.855 T0287.try6-opt1.pdb.gz costs 0 real_cost = 306.636 T0287.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 306.731 T0287.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 293.058 T0287.try5-opt2.pdb.gz costs 0 real_cost = 293.42 T0287.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 295.249 T0287.try5-opt1.pdb.gz costs 0 real_cost = 294.133 T0287.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 293.101 T0287.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 291.762 T0287.try4-opt2.pdb.gz costs 0 real_cost = 294.933 T0287.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 294.607 T0287.try4-opt1.pdb.gz costs 0 real_cost = 294.087 T0287.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 293.884 T0287.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 288.4 T0287.try3-opt2.pdb.gz costs 0 real_cost = 288.9 T0287.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 286.835 T0287.try3-opt1.pdb.gz costs 0 real_cost = 287.828 T0287.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 287.1 T0287.try24-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 240.994 T0287.try24-opt2.pdb.gz costs 0 real_cost = 242.53 T0287.try24-opt2.gromacs0.pdb.gz costs 0 real_cost = 243.409 T0287.try24-opt1.pdb.gz costs 0 real_cost = 242.305 T0287.try24-opt1-scwrl.pdb.gz costs 0 real_cost = 238.727 T0287.try23-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 206.385 T0287.try23-opt2.pdb.gz costs 0 real_cost = 212.086 T0287.try23-opt2.gromacs0.pdb.gz costs 0 real_cost = 209.701 T0287.try23-opt1.pdb.gz costs 0 real_cost = 207.811 T0287.try23-opt1-scwrl.pdb.gz costs 0 real_cost = 202.388 T0287.try22-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 203.274 T0287.try22-opt2.pdb.gz costs 0 real_cost = 207.975 T0287.try22-opt2.gromacs0.pdb.gz costs 0 real_cost = 206.617 T0287.try22-opt1.pdb.gz costs 0 real_cost = 210.471 T0287.try22-opt1-scwrl.pdb.gz costs 0 real_cost = 207.928 T0287.try21-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 297.619 T0287.try21-opt2.pdb.gz costs 0 real_cost = 298.351 T0287.try21-opt2.gromacs0.pdb.gz costs 0 real_cost = 295.85 T0287.try21-opt1.pdb.gz costs 0 real_cost = 298.269 T0287.try21-opt1-scwrl.pdb.gz costs 0 real_cost = 296.874 T0287.try20-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 272.855 T0287.try20-opt2.pdb.gz costs 0 real_cost = 277.856 T0287.try20-opt2.gromacs0.pdb.gz costs 0 real_cost = 279.674 T0287.try20-opt1.pdb.gz costs 0 real_cost = 278.462 T0287.try20-opt1-scwrl.pdb.gz costs 0 real_cost = 276.67 T0287.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 189.308 T0287.try2-opt2.pdb.gz costs 0 real_cost = 189.931 T0287.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 192.763 T0287.try2-opt1.pdb.gz costs 0 real_cost = 188.073 T0287.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 187.885 T0287.try19-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 210.78 T0287.try19-opt2.pdb.gz costs 0 real_cost = 211.301 T0287.try19-opt2.gromacs0.pdb.gz costs 0 real_cost = 205.938 T0287.try19-opt1.pdb.gz costs 0 real_cost = 210.694 T0287.try19-opt1-scwrl.pdb.gz costs 0 real_cost = 211.673 T0287.try18-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 238.869 T0287.try18-opt2.pdb.gz costs 0 real_cost = 241.729 T0287.try18-opt2.gromacs0.pdb.gz costs 0 real_cost = 241.423 T0287.try18-opt1.pdb.gz costs 0 real_cost = 241.547 T0287.try18-opt1-scwrl.pdb.gz costs 0 real_cost = 237.486 T0287.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 276.436 T0287.try17-opt2.pdb.gz costs 0 real_cost = 277.717 T0287.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 283.438 T0287.try17-opt1.pdb.gz costs 0 real_cost = 277.381 T0287.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 278.499 T0287.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 275.975 T0287.try16-opt2.pdb.gz costs 0 real_cost = 277.492 T0287.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 281.835 T0287.try16-opt1.pdb.gz costs 0 real_cost = 276.569 T0287.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 277.262 T0287.try15-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 278.012 T0287.try15-opt2.pdb.gz costs 0 real_cost = 278.096 T0287.try15-opt2.gromacs0.pdb.gz costs 0 real_cost = 284.011 T0287.try15-opt1.pdb.gz costs 0 real_cost = 279.218 T0287.try15-opt1-scwrl.pdb.gz costs 0 real_cost = 279.105 T0287.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 276.132 T0287.try14-opt2.pdb.gz costs 0 real_cost = 279.741 T0287.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 279.467 T0287.try14-opt1.pdb.gz costs 0 real_cost = 279.135 T0287.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 277.802 T0287.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 196.526 T0287.try13-opt2.pdb.gz costs 0 real_cost = 197.79 T0287.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 202.567 T0287.try13-opt1.pdb.gz costs 0 real_cost = 197.039 T0287.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 194.777 T0287.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 212.549 T0287.try12-opt2.pdb.gz costs 0 real_cost = 210.966 T0287.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 207.771 T0287.try12-opt2-old.pdb.gz costs 0 real_cost = 213.226 T0287.try12-opt1.pdb.gz costs 0 real_cost = 208.327 T0287.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 206.429 T0287.try12-opt1-scwrl-old.pdb.gz costs 0 real_cost = 214.316 T0287.try12-opt1-old.pdb.gz costs 0 real_cost = 212.34 T0287.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 241.255 T0287.try11-opt2.pdb.gz costs 0 real_cost = 242.358 T0287.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 238.276 T0287.try11-opt1.pdb.gz costs 0 real_cost = 237.718 T0287.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 239.048 T0287.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 264.426 T0287.try10-opt2.pdb.gz costs 0 real_cost = 264.551 T0287.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 259.981 T0287.try10-opt1.pdb.gz costs 0 real_cost = 261.246 T0287.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 261.486 T0287.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 289.702 T0287.try1-opt2.pdb.gz costs 0 real_cost = 289.032 T0287.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 289.657 T0287.try1-opt1.pdb.gz costs 0 real_cost = 293.323 T0287.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 293.6 ../model5.ts-submitted costs 0 real_cost = 298.367 ../model4.ts-submitted costs 0 real_cost = 211.737 ../model3.ts-submitted costs 0 real_cost = 277.994 ../model2.ts-submitted costs 0 real_cost = 288.708 ../model1.ts-submitted costs 0 real_cost = 242.51 align5 costs 0 real_cost = 413.525 align4 costs 0 real_cost = 366.468 align3 costs 0 real_cost = 369.998 align2 costs 0 real_cost = 451.092 align1 costs 0 real_cost = 340.585 T0287.try1-opt2.pdb costs 0 real_cost = 289.036 model5-scwrl costs 0 real_cost = 296.145 model5.ts-submitted costs 0 real_cost = 298.367 model4-scwrl costs 0 real_cost = 204.676 model4.ts-submitted costs 0 real_cost = 211.737 model3-scwrl costs 0 real_cost = 277.536 model3.ts-submitted costs 0 real_cost = 277.994 model2-scwrl costs 0 real_cost = 289.04 model2.ts-submitted costs 0 real_cost = 288.708 model1-scwrl costs 0 real_cost = 238.979 model1.ts-submitted costs 0 real_cost = 242.698 2g3vA costs 0 real_cost = -831.8 # command:CPU_time= 391.543 sec, elapsed time= 1013.56 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty