# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 2.89e-01 2fal a.1.1.2 15010 1josA 128 7.06e-01 d.52.7.1 84191 1hh8A 213 9.17e-01 1e96B a.118.8.1 61042 1e9gA 286 2.01e+00 1wgjA b.40.5.1 59393 1tmxA 293 2.03e+00 1a8y 367 3.69e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1dk0A 188 3.86e+00 1b2vA d.35.1.1 38530 1alvA 173 4.66e+00 1alvA a.39.1.8 17370 1k6iA 352 5.11e+00 c.2.1.2 68223 1b4pA 217 5.24e+00 a.45.1.1,c.47.1.5 83158,83159 1iomA 377 5.49e+00 a.103.1.1 83698 1hw1A 239 5.81e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1n08A 163 6.11e+00 b.43.5.1 79730 1a6m 151 6.24e+00 1a6m a.1.1.2 15018 1l9lA 74 6.45e+00 a.64.1.1 77827 1mla 309 6.62e+00 1mla c.19.1.1,d.58.23.1 31031,39383 1dc1A 323 7.23e+00 1dc1A c.52.1.11 33321 1fs7A 485 7.62e+00 1qdbA a.138.1.3 19691 2gnxA 365 8.49e+00 1dlwA 116 9.04e+00 1dlyA a.1.1.1 14982 1jboA 162 9.14e+00 a.1.1.3 84150 1dowA 205 9.90e+00 1dovA a.24.9.1 16626 1pjxA 314 1.05e+01 b.68.6.1 104167 1rjdA 334 1.06e+01 c.66.1.37 97558 1pbjA 125 1.10e+01 d.37.1.1,d.37.1.1 94414,94415 1qo7A 394 1.20e+01 1qo7A c.69.1.11 34697 1pwxA 254 1.24e+01 c.2.1.2 95262 2cfuA 658 1.27e+01 1mba 147 1.27e+01 2fal a.1.1.2 15149 1it2A 146 1.34e+01 a.1.1.2 66365 1a32 88 1.34e+01 1a32 a.16.1.2 16384 1s9rA 410 1.37e+01 d.126.1.4 98758 1e1hB 174 1.47e+01 1jigA 146 1.59e+01 a.25.1.1 71685 1ezwA 349 1.59e+01 1ezwA c.1.16.3 29558 1oneA 436 1.60e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1hxiA 121 1.73e+01 1hxiA a.118.8.1 61366 1as4B 37 1.87e+01 1as4B 1no5A 114 1.89e+01 d.218.1.5 92014 1f7lA 121 1.94e+01 1f7lA d.150.1.2 59666 1pa7A 130 1.99e+01 a.40.1.1 94410 1rrmA 386 2.02e+01 e.22.1.2 105081 1on2A 142 2.04e+01 a.4.5.24,a.76.1.1 87103,87104 1k3xA 262 2.04e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1si6X 282 2.09e+01 1lniA 96 2.11e+01 d.1.1.2 74046 1d2vC 466 2.34e+01 1mhlC 1k94A 165 2.37e+01 a.39.1.8 68333 1rfyA 102 2.39e+01 1d3vA 323 2.47e+01 1d3vA c.42.1.1 32559 1hz4A 373 2.60e+01 a.118.8.2 65960 1kgsA 225 2.65e+01 a.4.6.1,c.23.1.1 68596,68597 1psrA 100 2.70e+01 1psrA a.39.1.2 17180 16vpA 366 2.74e+01 16vpA d.180.1.1 42601 1ornA 226 2.89e+01 a.96.1.1 87342 1e7wA 291 2.92e+01 c.2.1.2 59373 1k3yA 221 3.03e+01 a.45.1.1,c.47.1.5 77245,77246 1ikpA 613 3.04e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1p5zB 263 3.35e+01 c.37.1.1 87815 1cqxA 403 3.55e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1eaqA 140 3.61e+01 b.2.5.6 76144 1moq 368 3.95e+01 1moq c.80.1.1 35302 1axn 323 4.05e+01 1avc a.65.1.1 18149 1jtvA 327 4.78e+01 c.2.1.2 84230 1ok7A 366 5.09e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1g8mA 593 5.22e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1mtyG 162 5.25e+01 1mtyG a.23.3.1 16498 1ayaA 101 5.47e+01 1qadA d.93.1.1 40460 1gs9A 165 5.51e+01 a.24.1.1 83313 1kqpA 271 5.53e+01 c.26.2.1 72883 1nkd 65 5.54e+01 1nkd a.30.1.1 16974 1sauA 115 5.59e+01 1rcqA 357 5.78e+01 b.49.2.2,c.1.6.1 104882,104883 1zoiA 276 5.88e+01 1ek6A 348 6.06e+01 1xel c.2.1.2 29800 1r1tA 122 6.08e+01 a.4.5.5 104769 1qh5A 260 6.11e+01 1qh5A d.157.1.2 42057 1f74A 293 6.51e+01 1nal3 c.1.10.1 29079 1b2pA 119 6.59e+01 1b2pA b.78.1.1 27998 1eazA 125 6.75e+01 b.55.1.1 70113 1orrA 347 6.82e+01 c.2.1.2 93460 1co6A 107 6.82e+01 1ycc a.3.1.1 15894 1r5rA 119 6.84e+01 a.39.2.1 97104 1hx0A 496 6.92e+01 b.71.1.1,c.1.8.1 61346,61347 1nkpA 88 6.93e+01 a.38.1.1 80573 1qnrA 344 6.93e+01 1qnoA c.1.8.3 28834 1eexG 173 7.25e+01 1dioG a.23.2.1 16490 1amx 180 7.57e+01 1amx b.2.3.1 22410 1b34B 118 7.68e+01 1b34B b.38.1.1 24797 1pv5A 264 7.76e+01 d.251.1.1 95150 1i4uA 181 7.87e+01 b.60.1.1 61732 1lq9A 112 8.02e+01 d.58.4.3 78129 1nwwA 149 8.09e+01 d.17.4.8 86306 1r7jA 95 8.45e+01 a.4.5.49 104836 1mdc 133 8.45e+01 1hmt b.60.1.2 27198 1ijqA 316 8.69e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1in6A 334 8.70e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1behA 187 8.83e+01 1a44 b.17.1.1 23700