# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b0b 142 1.67e-01 2fal a.1.1.2 15010 1josA 128 2.04e-01 d.52.7.1 84191 1e9gA 286 7.92e-01 1wgjA b.40.5.1 59393 1iomA 377 1.02e+00 a.103.1.1 83698 1alvA 173 1.60e+00 1alvA a.39.1.8 17370 1b4pA 217 1.66e+00 a.45.1.1,c.47.1.5 83158,83159 1k6iA 352 1.73e+00 c.2.1.2 68223 1dlwA 116 1.90e+00 1dlyA a.1.1.1 14982 1hh8A 213 2.04e+00 1e96B a.118.8.1 61042 1a6m 151 2.26e+00 1a6m a.1.1.2 15018 1rjdA 334 3.03e+00 c.66.1.37 97558 1oneA 436 3.07e+00 4enl c.1.11.1,d.54.1.1 29200,38844 1mla 309 3.21e+00 1mla c.19.1.1,d.58.23.1 31031,39383 1dowA 205 3.37e+00 1dovA a.24.9.1 16626 1dc1A 323 3.43e+00 1dc1A c.52.1.11 33321 1s9rA 410 3.68e+00 d.126.1.4 98758 1a32 88 4.21e+00 1a32 a.16.1.2 16384 2cfuA 658 4.72e+00 1b4fA 82 4.83e+00 1b4fA a.60.1.2 17934 1l9lA 74 5.22e+00 a.64.1.1 77827 1n08A 163 5.65e+00 b.43.5.1 79730 1on2A 142 5.84e+00 a.4.5.24,a.76.1.1 87103,87104 1fs7A 485 5.87e+00 1qdbA a.138.1.3 19691 1e7wA 291 6.07e+00 c.2.1.2 59373 1hw1A 239 6.64e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1mba 147 6.65e+00 2fal a.1.1.2 15149 1hxiA 121 6.91e+00 1hxiA a.118.8.1 61366 1it2A 146 6.96e+00 a.1.1.2 66365 1tmxA 293 7.12e+00 1k94A 165 7.31e+00 a.39.1.8 68333 1dk0A 188 7.59e+00 1b2vA d.35.1.1 38530 1r1tA 122 8.39e+00 a.4.5.5 104769 1ikpA 613 9.75e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1as4B 37 1.00e+01 1as4B 1rfyA 102 1.03e+01 1ezwA 349 1.04e+01 1ezwA c.1.16.3 29558 1f7lA 121 1.11e+01 1f7lA d.150.1.2 59666 1si6X 282 1.28e+01 1amx 180 1.29e+01 1amx b.2.3.1 22410 1moq 368 1.38e+01 1moq c.80.1.1 35302 1oxjA 173 1.46e+01 a.60.1.2,a.118.1.13 87517,87518 1qo7A 394 1.49e+01 1qo7A c.69.1.11 34697 1eazA 125 1.53e+01 b.55.1.1 70113 1jtvA 327 1.56e+01 c.2.1.2 84230 1no5A 114 1.56e+01 d.218.1.5 92014 1pwxA 254 1.57e+01 c.2.1.2 95262 1k3yA 221 1.57e+01 a.45.1.1,c.47.1.5 77245,77246 1a8y 367 1.60e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1p5zB 263 1.62e+01 c.37.1.1 87815 1ek6A 348 1.65e+01 1xel c.2.1.2 29800 1hz4A 373 1.68e+01 a.118.8.2 65960 1kqpA 271 1.77e+01 c.26.2.1 72883 1tt8A 164 1.87e+01 1axn 323 1.90e+01 1avc a.65.1.1 18149 16vpA 366 1.92e+01 16vpA d.180.1.1 42601 1sauA 115 1.94e+01 1psrA 100 1.97e+01 1psrA a.39.1.2 17180 1d3vA 323 1.99e+01 1d3vA c.42.1.1 32559 1nofA 383 2.00e+01 b.71.1.2,c.1.8.3 92020,92021 1gs9A 165 2.03e+01 a.24.1.1 83313 1sx7A 164 2.04e+01 1jboA 162 2.17e+01 a.1.1.3 84150 1zoiA 276 2.24e+01 1mtyB 384 2.26e+01 1mtyB a.25.1.2 16740 1orc 71 2.31e+01 1orc a.35.1.2 17054 1nkd 65 2.45e+01 1nkd a.30.1.1 16974 1llfA 534 2.47e+01 c.69.1.17 78094 1brt 277 2.53e+01 1brt c.69.1.12 34699 1d2vC 466 2.56e+01 1mhlC 1i19A 561 2.56e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1jigA 146 2.61e+01 a.25.1.1 71685 1nxuA 333 2.65e+01 c.122.1.1 86389 1eexG 173 2.71e+01 1dioG a.23.2.1 16490 1nwwA 149 2.74e+01 d.17.4.8 86306 1rcqA 357 2.77e+01 b.49.2.2,c.1.6.1 104882,104883 1q92A 197 2.79e+01 c.108.1.8 96250 1mtyG 162 2.80e+01 1mtyG a.23.3.1 16498 1ok7A 366 2.96e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1ornA 226 2.98e+01 a.96.1.1 87342 1fvkA 189 3.20e+01 1fvkA c.47.1.13 90351 1nkpA 88 3.22e+01 a.38.1.1 80573 1pa7A 130 3.27e+01 a.40.1.1 94410 1rrmA 386 3.33e+01 e.22.1.2 105081 1kgsA 225 3.37e+01 a.4.6.1,c.23.1.1 68596,68597 1gxyA 226 3.42e+01 d.166.1.3 76380 1o5kA 306 3.44e+01 c.1.10.1 92504 1b0xA 94 3.53e+01 1b4fA a.60.1.2 17933 1eaqA 140 3.54e+01 b.2.5.6 76144 1pbjA 125 3.59e+01 d.37.1.1,d.37.1.1 94414,94415 1a0p 290 3.75e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1ix9A 205 3.81e+01 a.2.11.1,d.44.1.1 76899,76900 1k2xB 143 3.82e+01 1m65A 245 3.89e+01 c.6.3.1 84847 1co6A 107 3.90e+01 1ycc a.3.1.1 15894 1odmA 331 3.96e+01 b.82.2.1 86875 1k07A 263 4.04e+01 d.157.1.1 77218 1in6A 334 4.05e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1qnrA 344 4.15e+01 1qnoA c.1.8.3 28834 1r5rA 119 4.18e+01 a.39.2.1 97104 1ccwB 483 4.31e+01 1cb7B c.1.19.2 29646 1g5aA 628 4.36e+01 b.71.1.1,c.1.8.1 65152,65153 1bkrA 109 4.40e+01 1bkrA a.40.1.1 17394 1m6kA 251 4.46e+01 e.3.1.1 78695 1p4cA 380 4.70e+01 c.1.4.1 94100 1hdhA 536 4.80e+01 c.76.1.2 65805 1oz2A 331 4.84e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1b3uA 588 4.86e+01 1b3uA a.118.1.2 19135 1p4oA 322 4.96e+01 d.144.1.7 87775 1b65A 375 4.97e+01 1b65A d.154.1.1 42020 1lq9A 112 5.26e+01 d.58.4.3 78129 1914 232 5.29e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1b5pA 385 5.35e+01 c.67.1.1 90403 1p5dX 463 5.35e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1i4uA 181 5.46e+01 b.60.1.1 61732 1ak0 270 5.71e+01 1ak0 a.124.1.2 19345 1ayaA 101 5.82e+01 1qadA d.93.1.1 40460 1qopB 396 5.86e+01 2tysB c.79.1.1 35270 1gqzA 274 5.88e+01 d.21.1.1,d.21.1.1 83311,83312 1kicA 339 5.93e+01 c.70.1.1 72510 1pjxA 314 6.08e+01 b.68.6.1 104167 1n9eA 787 6.10e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1akhA 61 6.25e+01 1akhA a.4.1.1 15980 1eca 136 6.34e+01 1flp a.1.1.2 15209 1q2hA 69 6.40e+01 a.34.4.1 104498 1oaiA 59 6.59e+01 a.5.2.3 81255 1iooA 196 6.73e+01 d.124.1.1 71250 1r7jA 95 6.86e+01 a.4.5.49 104836 1e1hA 287 6.88e+01 d.92.1.7 83167 1jsdB 176 7.10e+01 h.3.1.1 63259 1n3lA 372 7.24e+01 c.26.1.1 79966 1orrA 347 7.32e+01 c.2.1.2 93460 1a76 326 7.33e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1jlvA 209 7.54e+01 a.45.1.1,c.47.1.5 71729,71730 1dwkA 156 7.56e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1b2pA 119 7.65e+01 1b2pA b.78.1.1 27998 1nnlA 225 7.79e+01 c.108.1.4 85906 1dqeA 137 8.12e+01 1dqeA a.39.2.1 17388 1h12A 405 8.12e+01 a.102.1.2 83447 1dk8A 147 8.16e+01 1agrE a.91.1.1 18548 1euwA 152 8.20e+01 1dupA b.85.4.1 28349 1b35B 255 8.30e+01 1b35B b.121.4.1 23334 1pv5A 264 8.47e+01 d.251.1.1 95150 1rl0A 255 8.58e+01 1aquA 297 8.63e+01 1aquA c.37.1.5 31942 1ayx 492 8.71e+01 1ayx a.102.1.1 18825 1p99A 295 8.84e+01 c.94.1.1 94384 1nu4A 97 8.88e+01 d.58.7.1 80731 1q0pA 223 8.97e+01 c.62.1.1 95507