# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cunA 410 6.64e-01 1cpt 412 1.62e+00 1cpt a.104.1.1 18968 1klxA 138 2.08e+00 a.118.18.1 77440 2g09A 297 4.72e+00 1ytzT 107 6.34e+00 1b0b 142 6.75e+00 2fal a.1.1.2 15010 1wmqA 147 6.83e+00 1wpuA 147 6.83e+00 2sas 185 9.39e+00 2sas a.39.1.5 17258 1tia 279 1.01e+01 3tgl c.69.1.17 34737 2bduA 297 1.02e+01 1yviA 149 1.06e+01 1z2iA 358 1.13e+01 1gpjA 404 1.22e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1josA 128 1.23e+01 d.52.7.1 84191 1sglA 209 1.23e+01 d.124.1.1 105536 1xvhA 129 1.36e+01 1wwzA 159 1.46e+01 1eg3A 261 1.53e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1r6uA 437 1.58e+01 c.26.1.1 97163 1io1A 398 1.61e+01 1io1A e.32.1.1 62611 1f3aA 222 1.63e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1fzcA 87 1.63e+01 1fzcA h.1.8.1 45590 2cwyA 94 1.90e+01 1knqA 175 1.98e+01 c.37.1.17 72786 1e9gA 286 1.99e+01 1wgjA b.40.5.1 59393 1uedA 406 2.01e+01 a.104.1.1 99256 1sumB 235 2.06e+01 a.7.12.1 106025 1k47A 337 2.09e+01 d.14.1.5,d.58.26.4 72040,72041 1efyA 350 2.10e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1tmxA 293 2.21e+01 1iomA 377 2.30e+01 a.103.1.1 83698 1utuA 108 2.34e+01 1g8pA 350 2.37e+01 1g8pA c.37.1.20 60376 1rsy 152 2.43e+01 1rsy b.7.1.2 23192 1k8kD 300 2.51e+01 d.198.2.1,d.198.2.1 68309,68310 2d2sA 235 2.58e+01 1qopB 396 2.64e+01 2tysB c.79.1.1 35270 1a8y 367 2.65e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1pbjA 125 2.72e+01 d.37.1.1,d.37.1.1 94414,94415 1z3xA 238 2.81e+01 1w5tA 412 2.87e+01 1ab4 477 2.98e+01 1ab4 e.11.1.1 43251 2cy7A 396 2.99e+01 2ezvA 269 3.01e+01 1vfgA 390 3.08e+01 a.173.1.1,d.218.1.4 108570,108571 1c02A 166 3.14e+01 1qspA a.24.10.2 16633 1bzpA 153 3.15e+01 1a6m a.1.1.2 15020 1vqwA 457 3.17e+01 2trcP 217 3.20e+01 1b9yC c.47.1.6 33051 1icrA 217 3.27e+01 1vfrA d.90.1.1 62274 1z9fA 153 3.29e+01 1g24A 211 3.31e+01 1g24A d.166.1.1 42270 1fkmA 396 3.42e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1ykiA 217 3.46e+01 1ewqA 765 3.58e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1xq8A 140 3.59e+01 1s35A 214 3.59e+01 a.7.1.1,a.7.1.1 98420,98421 1hh8A 213 3.63e+01 1e96B a.118.8.1 61042 1xw5A 217 3.67e+01 1dk0A 188 3.71e+01 1b2vA d.35.1.1 38530 1guxA 218 3.71e+01 1guxA a.74.1.3 18388 1k78A 149 3.74e+01 a.4.1.5,a.4.1.5 68255,68256 1yi8A 351 3.74e+01 2a9kB 223 3.80e+01 1mla 309 3.84e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1y9qA 192 3.87e+01 1zm0A 114 3.89e+01 2bivA 243 3.92e+01 1mym 154 4.09e+01 1a6m a.1.1.2 15054 2c4jA 218 4.14e+01 1k0dA 260 4.35e+01 a.45.1.1,c.47.1.5 67930,67931 1t6uA 117 4.35e+01 a.24.22.1 106584 2b7eA 59 4.36e+01 1wm5A 208 4.46e+01 1xx0A 127 4.48e+01 1qbjA 81 4.49e+01 1qbjA a.4.5.19 16155 1y1xA 191 4.55e+01 5csmA 256 4.56e+01 5csmA a.130.1.2 19494 1w4vA 119 4.62e+01 2ezk 99 4.63e+01 2ezk a.4.1.2 16027 1uvzA 119 4.63e+01 1mlo 154 4.64e+01 1a6m a.1.1.2 15085 1k3yA 221 4.67e+01 a.45.1.1,c.47.1.5 77245,77246 1xgkA 352 4.72e+01 1zhhB 242 4.80e+01 2mgb 154 4.83e+01 1a6m a.1.1.2 15102 2d7vA 162 4.86e+01 1k9uA 78 4.86e+01 a.39.1.10 84348 2czrA 226 4.95e+01 1l9lA 74 4.97e+01 a.64.1.1 77827 1ee4A 423 5.04e+01 1ee4A a.118.1.1 19128 2mgg 154 5.09e+01 1a6m a.1.1.2 15069 1vcsA 102 5.10e+01 1bo1A 416 5.16e+01 1bo1A d.143.1.2 41591 1w33A 181 5.18e+01 2spl 154 5.20e+01 1a6m a.1.1.2 15047 2bb6A 414 5.20e+01 1quqB 121 5.21e+01 1quqB b.40.4.3 25305 1ytaA 180 5.21e+01 1mll 154 5.22e+01 1a6m a.1.1.2 15057 1it2A 146 5.28e+01 a.1.1.2 66365 1htyA 1015 5.29e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1fjgI 128 5.41e+01 1fjfI d.14.1.1 37559 1fs7A 485 5.49e+01 1qdbA a.138.1.3 19691 1h3lA 87 5.49e+01 a.177.1.1 76639 1s9rA 410 5.51e+01 d.126.1.4 98758 1a32 88 5.61e+01 1a32 a.16.1.2 16384 1y21A 282 5.64e+01 2c5uA 375 5.67e+01 1rjdA 334 5.74e+01 c.66.1.37 97558 1qwnA 1045 5.80e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1mod 154 5.94e+01 1a6m a.1.1.2 15107 1ru3A 732 5.94e+01 e.26.1.3 97835 2br9A 234 5.94e+01 1mv8A 436 6.11e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1j9yA 385 6.17e+01 1j9yA c.1.8.3 62791 1oi1A 221 6.18e+01 b.34.9.3,b.34.9.3 87037,87038 1cc1L 498 6.22e+01 1h2rL e.18.1.1 43301 1zl8B 54 6.23e+01 1s7zA 117 6.29e+01 a.159.3.1 98715 1ofcX 304 6.34e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 4enl 436 6.37e+01 4enl c.1.11.1,d.54.1.1 29202,38846 1bkdS 439 6.43e+01 1bkdS a.117.1.1 19111 1hw1A 239 6.46e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1g5aA 628 6.48e+01 b.71.1.1,c.1.8.1 65152,65153 1mlg 154 6.52e+01 1a6m a.1.1.2 15104 1uz3A 102 6.53e+01 1qwlA 505 6.56e+01 e.5.1.1 96483 103m 154 6.58e+01 1a6m a.1.1.2 15124 1feuA 206 6.59e+01 1feuA b.53.1.1 59801 1y8qA 346 6.69e+01 1wa5B 530 6.76e+01 1x05A 129 6.79e+01 1koqA 253 6.85e+01 2cba b.74.1.1 27964 1sz9A 144 6.95e+01 a.118.9.4 106139 1jgsA 138 7.07e+01 a.4.5.28 66683 1tljA 213 7.11e+01 d.282.1.1 107126 1or7A 194 7.19e+01 a.4.13.2,a.177.1.1 87332,87333 1o5zA 442 7.25e+01 c.59.1.2,c.72.2.2 92530,92531 1qr6A 584 7.42e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 1tph1 247 7.45e+01 1amk 1foeA 377 7.50e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1j1bA 420 7.55e+01 d.144.1.7 90758 1i1rB 181 7.60e+01 1i1rB a.26.1.1 61548 1vajA 214 7.63e+01 2hddA 61 7.67e+01 2hddA a.4.1.1 15971 1rrmA 386 7.70e+01 e.22.1.2 105081 1lj2A 110 7.91e+01 h.1.13.2 73926 1si6X 282 7.94e+01 1wd7A 261 7.97e+01 1a6m 151 7.97e+01 1a6m a.1.1.2 15018 1ad3A 452 7.99e+01 1ad3A c.82.1.1 35335 1zq7A 207 7.99e+01 1ikpA 613 8.00e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1eaqA 140 8.15e+01 b.2.5.6 76144 1alvA 173 8.16e+01 1alvA a.39.1.8 17370 1rx0A 393 8.18e+01 a.29.3.1,e.6.1.1 98007,98008 1wcwA 261 8.31e+01 1ji6A 589 8.34e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1h6qA 168 8.41e+01 1h6qA b.88.1.2 60692 1k6xA 352 8.43e+01 c.2.1.2 68238 1wpbA 172 8.51e+01 1us6A 102 8.54e+01 a.2.13.1 107999 1bw0A 416 8.61e+01 1bw0A c.67.1.1 34385 1oneA 436 8.66e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1b4pA 217 8.67e+01 a.45.1.1,c.47.1.5 83158,83159 1rfyA 102 8.79e+01 1r8sE 203 8.86e+01 a.118.3.1 97248 1p68A 102 8.99e+01 k.8.1.1 94158