# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2sas 185 1.88e-01 2sas a.39.1.5 17258 1g24A 211 4.41e-01 1g24A d.166.1.1 42270 2a9kB 223 1.28e+00 1fzcA 87 1.62e+00 1fzcA h.1.8.1 45590 1pvaA 110 1.93e+00 1a75A a.39.1.4 17207 2trcP 217 2.29e+00 1b9yC c.47.1.6 33051 2b7eA 59 2.84e+00 1knqA 175 4.19e+00 c.37.1.17 72786 1u8sA 192 5.21e+00 d.58.18.5,d.58.18.5 107737,107738 1b0b 142 5.95e+00 2fal a.1.1.2 15010 1z77A 200 6.09e+00 1q0bA 367 6.24e+00 c.37.1.9 95502 1x88A 359 6.38e+00 2bznA 351 6.73e+00 2atxA 194 6.86e+00 1josA 128 7.79e+00 d.52.7.1 84191 1a8y 367 7.89e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1eerA 166 7.95e+00 1eerA a.26.1.2 16846 1y14A 187 8.15e+00 1icxA 155 8.42e+00 d.129.3.1 71191 2c6qA 351 8.69e+00 2ahrA 259 8.93e+00 1iomA 377 9.69e+00 a.103.1.1 83698 3ladA 476 1.00e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1vmbA 140 1.13e+01 1xg7A 250 1.16e+01 1foeA 377 1.16e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1kgsA 225 1.20e+01 a.4.6.1,c.23.1.1 68596,68597 1bo1A 416 1.22e+01 1bo1A d.143.1.2 41591 1f06A 320 1.26e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1y1xA 191 1.27e+01 2b3yA 888 1.32e+01 1feuA 206 1.33e+01 1feuA b.53.1.1 59801 1k47A 337 1.33e+01 d.14.1.5,d.58.26.4 72040,72041 1k78A 149 1.39e+01 a.4.1.5,a.4.1.5 68255,68256 1e9gA 286 1.46e+01 1wgjA b.40.5.1 59393 1dk0A 188 1.58e+01 1b2vA d.35.1.1 38530 1ru3A 732 1.62e+01 e.26.1.3 97835 1xsnA 335 1.65e+01 1tuhA 156 1.67e+01 d.17.4.11 107345 1jqgA 433 1.68e+01 c.56.5.1,d.58.3.1 71791,71792 1x3kA 152 1.68e+01 1wr2A 238 1.69e+01 1rz4A 226 1.73e+01 a.4.5.53,a.118.1.18 105131,105132 2cunA 410 1.79e+01 1jmvA 141 1.82e+01 c.26.2.4 66897 1y8aA 332 1.85e+01 1rztA 331 1.87e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1fts 295 1.90e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 1e3aA 260 2.11e+01 1ajqA d.153.1.2 41838 2bcqA 335 2.16e+01 1hh8A 213 2.20e+01 1e96B a.118.8.1 61042 1qbjA 81 2.26e+01 1qbjA a.4.5.19 16155 1rtxA 123 2.31e+01 a.1.1.1 97827 1gk9A 260 2.37e+01 d.153.1.2 65246 1lj2A 110 2.42e+01 h.1.13.2 73926 1x67A 146 2.44e+01 1yf2A 425 2.80e+01 1p5jA 372 2.91e+01 c.79.1.1 104067 1wcv1 257 2.94e+01 2bleA 367 2.97e+01 1s7zA 117 2.99e+01 a.159.3.1 98715 1gw5S 142 3.03e+01 d.110.4.2 70633 1wpuA 147 3.15e+01 1s69A 124 3.22e+01 a.1.1.1 105305 2g2dA 193 3.22e+01 2a1jB 91 3.28e+01 1r29A 127 3.31e+01 d.42.1.1 96856 1ff9A 450 3.36e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1bxyA 60 3.37e+01 1bxyA d.59.1.1 39525 1wm5A 208 3.38e+01 1iseA 185 3.41e+01 d.67.3.1 90691 1l9lA 74 3.55e+01 a.64.1.1 77827 1b7yA 350 3.57e+01 1pysA d.104.1.1 40776 1s1pA 331 3.59e+01 c.1.7.1 98350 2fk4A 75 3.70e+01 1zgwA 139 3.74e+01 1gjsA 65 3.83e+01 1gab a.8.1.2 60578 1tzvA 142 3.84e+01 a.79.1.1 107526 1pysA 350 3.90e+01 1pysA d.104.1.1 40775 1xs0A 136 4.06e+01 1p68A 102 4.15e+01 k.8.1.1 94158 2b99A 156 4.20e+01 1zmtA 254 4.20e+01 1veaA 148 4.23e+01 d.275.1.1 108529 2hddA 61 4.27e+01 2hddA a.4.1.1 15971 1ytzT 107 4.32e+01 2gk4A 232 4.33e+01 1pk5A 248 4.39e+01 a.123.1.1 88139 1r71A 178 4.44e+01 a.4.14.1 104823 1yviA 149 4.56e+01 1rkuA 206 4.60e+01 c.108.1.11 97627 1qgoA 264 4.70e+01 1qgoA c.92.1.2 35596 1xk4C 113 4.70e+01 1t64A 377 4.78e+01 c.42.1.2 106543 1wmqA 147 4.78e+01 1zk8A 183 4.84e+01 1in4A 334 4.85e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1qzgA 187 4.94e+01 b.40.4.3 96643 1go4A 205 5.01e+01 d.135.1.1 70292 1x79A 98 5.04e+01 1sz9A 144 5.10e+01 a.118.9.4 106139 1s9rA 410 5.51e+01 d.126.1.4 98758 1xvhA 129 5.51e+01 1u8bA 133 5.53e+01 1ojqA 212 5.62e+01 d.166.1.1 93146 2acjA 66 5.63e+01 1rxwA 336 5.80e+01 a.60.7.1,c.120.1.2 98059,98060 1r4vA 171 5.95e+01 a.197.1.1 97049 1guxA 218 6.02e+01 1guxA a.74.1.3 18388 2bnkA 67 6.02e+01 1jf2A 195 6.04e+01 1ej3A a.39.1.5 62930 1wdcB 156 6.11e+01 1wdcB a.39.1.5 17302 2acaA 189 6.13e+01 1gesA 450 6.21e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1pwxA 254 6.25e+01 c.2.1.2 95262 2cwaA 263 6.27e+01 1cx4A 305 6.34e+01 b.82.3.2,b.82.3.2 59099,59100 1gz8A 299 6.42e+01 d.144.1.7 83405 1colA 204 6.47e+01 1a87 f.1.1.1 43378 1alvA 173 6.49e+01 1alvA a.39.1.8 17370 1ab4 477 6.59e+01 1ab4 e.11.1.1 43251 2mgg 154 6.59e+01 1a6m a.1.1.2 15069 1mg4A 113 6.66e+01 d.15.11.1 84953 2c5rA 67 6.66e+01 1mod 154 6.69e+01 1a6m a.1.1.2 15107 2gasA 307 6.70e+01 1xeeA 91 6.76e+01 1psrA 100 6.77e+01 1psrA a.39.1.2 17180 1ssqA 267 6.86e+01 b.81.1.6 105993 1in6A 334 7.07e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1dgnA 89 7.08e+01 1dgnA a.77.1.3 18436 1gpqA 135 7.18e+01 d.233.1.1 83295 1i1nA 226 7.24e+01 c.66.1.7 71102 1mlo 154 7.29e+01 1a6m a.1.1.2 15085 1f3aA 222 7.31e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1mll 154 7.58e+01 1a6m a.1.1.2 15057 1hcl 298 7.62e+01 1hcl d.144.1.7 41593 2csbA 519 7.86e+01 1pbjA 125 7.92e+01 d.37.1.1,d.37.1.1 94414,94415 1mlg 154 7.95e+01 1a6m a.1.1.2 15104 1qhdA 398 7.97e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1rcqA 357 8.08e+01 b.49.2.2,c.1.6.1 104882,104883 1mym 154 8.11e+01 1a6m a.1.1.2 15054 6paxA 133 8.12e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1ypfA 336 8.16e+01 1y0zA 330 8.19e+01 103m 154 8.19e+01 1a6m a.1.1.2 15124 2mgb 154 8.21e+01 1a6m a.1.1.2 15102 1fc3A 120 8.23e+01 1fc3A a.4.6.3 16237 1hq0A 295 8.24e+01 1hzgA d.194.1.1 61122 1kk8B 139 8.28e+01 a.39.1.5 77430 1vliA 385 8.41e+01 b.85.1.1,c.1.10.6 108830,108831 2f5xA 312 8.43e+01 1el4A 195 8.47e+01 1ej3A a.39.1.5 59453 1tp4A 97 8.53e+01 a.189.1.1 107183 1bzpA 153 8.64e+01 1a6m a.1.1.2 15020 1lcyA 325 8.85e+01 b.36.1.4,b.47.1.1 73834,73835 1ymqA 261 8.89e+01 1wy2A 351 8.90e+01