# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2trcP 217 6.59e-01 1b9yC c.47.1.6 33051 2sas 185 1.74e+00 2sas a.39.1.5 17258 1fzcA 87 1.89e+00 1fzcA h.1.8.1 45590 2a1jB 91 5.33e+00 1pvaA 110 6.04e+00 1a75A a.39.1.4 17207 1ov3A 138 7.24e+00 b.34.2.1,b.34.2.1 87451,87452 1ytzT 107 7.94e+00 2fs3A 282 7.98e+00 1ppjD 241 8.46e+00 a.3.1.3,f.23.11.1 104258,104259 1ru3A 732 9.22e+00 e.26.1.3 97835 1lj2A 110 9.50e+00 h.1.13.2 73926 2b7eA 59 9.68e+00 1fh6A 282 1.01e+01 1fh6A 1g24A 211 1.18e+01 1g24A d.166.1.1 42270 1b0b 142 1.19e+01 2fal a.1.1.2 15010 1ohgA 282 1.31e+01 d.183.1.1 93018 1tmxA 293 1.39e+01 1utuA 108 1.40e+01 1y9wA 140 1.62e+01 1vlrA 350 1.65e+01 d.13.1.3,d.246.1.1 108860,108861 1z7mA 344 1.68e+01 1ugpA 203 1.75e+01 d.149.1.1 107831 1r29A 127 1.84e+01 d.42.1.1 96856 2cujA 108 1.85e+01 1mm4A 170 1.88e+01 f.4.1.2 79294 2occH 85 1.91e+01 2occH a.51.1.1 17796 1tetL 216 2.07e+01 32c2A b.1.1.1,b.1.1.2 19902,20996 2atxA 194 2.09e+01 1ireA 204 2.11e+01 d.149.1.1 76769 1yviA 149 2.13e+01 2b3yA 888 2.20e+01 1icxA 155 2.22e+01 d.129.3.1 71191 2b99A 156 2.29e+01 1bdyA 123 2.45e+01 1bdyA b.7.1.1 23190 2a9kB 223 2.50e+01 1gdeA 389 2.51e+01 c.67.1.1 60456 1k9uA 78 2.54e+01 a.39.1.10 84348 1v54H 85 2.57e+01 a.51.1.1 100329 1kk8B 139 2.72e+01 a.39.1.5 77430 2bq4A 116 2.76e+01 2hddA 61 2.86e+01 2hddA a.4.1.1 15971 1wdcB 156 2.99e+01 1wdcB a.39.1.5 17302 2fk4A 75 3.01e+01 3ladA 476 3.03e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1t6sA 162 3.06e+01 2ezk 99 3.08e+01 2ezk a.4.1.2 16027 1x3kA 152 3.09e+01 1v5sA 126 3.14e+01 d.129.6.1 108384 1vorW 173 3.20e+01 1a32 88 3.21e+01 1a32 a.16.1.2 16384 1g1eB 89 3.25e+01 1g1eB a.59.1.1 17931 1uz3A 102 3.36e+01 1oqyA 368 3.44e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1ng2A 193 3.70e+01 b.34.2.1,b.34.2.1 85660,85661 1pmzA 86 3.78e+01 a.39.1.10 104195 1vmbA 140 3.81e+01 1qbjA 81 3.82e+01 1qbjA a.4.5.19 16155 1q3eA 207 3.83e+01 b.82.3.2 95669 1w2qA 127 3.84e+01 1el4A 195 3.87e+01 1ej3A a.39.1.5 59453 1enh 54 3.87e+01 2hddA a.4.1.1 15973 1xsnA 335 3.95e+01 1v9nA 360 4.01e+01 1f6vA 91 4.19e+01 1f6vA a.49.1.1 17791 1z21A 112 4.26e+01 1vekA 84 4.29e+01 1h6qA 168 4.34e+01 1h6qA b.88.1.2 60692 2cb5A 453 4.37e+01 3gcb d.3.1.1 37035 1rztA 331 4.60e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2auaA 224 4.73e+01 1c3gA 170 4.79e+01 1c3gA b.4.1.1,b.4.1.1 22831,22832 1zk8A 183 4.80e+01 1s7zA 117 4.80e+01 a.159.3.1 98715 1j58A 385 4.86e+01 b.82.1.2 71531 1pbjA 125 5.23e+01 d.37.1.1,d.37.1.1 94414,94415 1zb1A 392 5.32e+01 1g8pA 350 5.44e+01 1g8pA c.37.1.20 60376 2bcqA 335 5.45e+01 1xvhA 129 5.56e+01 1hstA 90 5.71e+01 1hstA a.4.5.13 16140 1y14A 187 6.05e+01 1sqrA 95 6.08e+01 1ppjE 196 6.13e+01 b.33.1.1,f.23.12.1 104260,104261 1zl8B 54 6.17e+01 1gw5S 142 6.18e+01 d.110.4.2 70633 1yrkA 126 6.23e+01 1ux5A 411 6.35e+01 a.207.1.1 100144 1josA 128 6.39e+01 d.52.7.1 84191 1o6zA 303 6.40e+01 c.2.1.5,d.162.1.1 81107,81108 1knqA 175 6.41e+01 c.37.1.17 72786 1qv1A 195 6.41e+01 a.39.1.5 96347 1ytaA 180 6.54e+01 1oaoC 729 6.79e+01 e.26.1.3 86746 1jyhA 157 6.84e+01 d.60.1.3 71956 1feuA 206 6.85e+01 1feuA b.53.1.1 59801 2gnxA 365 6.97e+01 1jtvA 327 7.30e+01 c.2.1.2 84230 1mjuL 219 7.56e+01 b.1.1.1,b.1.1.2 91304,91305 1djrD 103 7.57e+01 3chbD b.40.2.1 24865 2ahjB 212 7.64e+01 2ahjB b.34.4.4 24599 1mg4A 113 7.70e+01 d.15.11.1 84953 1kgsA 225 7.70e+01 a.4.6.1,c.23.1.1 68596,68597 2kinA 238 7.76e+01 1bg2 c.37.1.9 32190 1jf2A 195 7.79e+01 1ej3A a.39.1.5 62930 1otfA 62 7.94e+01 1otfA d.80.1.1 39820 1ncwL 219 8.06e+01 b.1.1.1,b.1.1.2 85557,85558 1lq9A 112 8.11e+01 d.58.4.3 78129 1c4kA 730 8.24e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1x67A 146 8.31e+01 1f06A 320 8.39e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1m4zA 238 8.56e+01 b.34.12.1 78630 1bxyA 60 8.56e+01 1bxyA d.59.1.1 39525 1wn0A 145 8.57e+01 1sra 151 8.60e+01 1sra a.39.1.3 17190 1psrA 100 8.61e+01 1psrA a.39.1.2 17180 1xg7A 250 8.62e+01 2ap3A 199 8.76e+01 2cunA 410 8.76e+01 1mba 147 8.77e+01 2fal a.1.1.2 15149 2cz1B 212 8.82e+01 1nr3A 122 8.89e+01 d.236.1.1 86092 1rkuA 206 8.95e+01 c.108.1.11 97627