mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0286.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0286/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173065465 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.11007 sec, elapsed time= 6.23032 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.19106 sec, elapsed time= 6.33774 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0286 numbered 1 through 205 Created new target T0286 from T0286.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0286.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0286.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0286.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 8.93264 sec, elapsed time= 9.62774 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -8.41463 # GDT_score(maxd=8,maxw=2.9)= -7.84237 # GDT_score(maxd=8,maxw=3.2)= -7.54577 # GDT_score(maxd=8,maxw=3.5)= -7.27054 # GDT_score(maxd=10,maxw=3.8)= -8.11819 # GDT_score(maxd=10,maxw=4)= -7.9074 # GDT_score(maxd=10,maxw=4.2)= -7.71669 # GDT_score(maxd=12,maxw=4.3)= -8.77243 # GDT_score(maxd=12,maxw=4.5)= -8.55599 # GDT_score(maxd=12,maxw=4.7)= -8.35796 # GDT_score(maxd=14,maxw=5.2)= -8.94749 # GDT_score(maxd=14,maxw=5.5)= -8.64569 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_791528069.pdb -s /var/tmp/to_scwrl_791528069.seq -o /var/tmp/from_scwrl_791528069.pdb > /var/tmp/scwrl_791528069.log Error: can't open any of /var/tmp/from_scwrl_791528069.pdb or /var/tmp/from_scwrl_791528069_b.pdb or /var/tmp/from_scwrl_791528069_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -8.90244 # GDT_score(maxd=8,maxw=2.9)= -8.00402 # GDT_score(maxd=8,maxw=3.2)= -7.70365 # GDT_score(maxd=8,maxw=3.5)= -7.41964 # GDT_score(maxd=10,maxw=3.8)= -8.35402 # GDT_score(maxd=10,maxw=4)= -8.15583 # GDT_score(maxd=10,maxw=4.2)= -7.97652 # GDT_score(maxd=12,maxw=4.3)= -9.13572 # GDT_score(maxd=12,maxw=4.5)= -8.92481 # GDT_score(maxd=12,maxw=4.7)= -8.7167 # GDT_score(maxd=14,maxw=5.2)= -9.42807 # GDT_score(maxd=14,maxw=5.5)= -9.10006 # command:# request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1369927673.pdb -s /var/tmp/to_scwrl_1369927673.seq -o /var/tmp/from_scwrl_1369927673.pdb > /var/tmp/scwrl_1369927673.log Error: can't open any of /var/tmp/from_scwrl_1369927673.pdb or /var/tmp/from_scwrl_1369927673_b.pdb or /var/tmp/from_scwrl_1369927673_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -9.39024 # GDT_score(maxd=8,maxw=2.9)= -8.42058 # GDT_score(maxd=8,maxw=3.2)= -8.06335 # GDT_score(maxd=8,maxw=3.5)= -7.74851 # GDT_score(maxd=10,maxw=3.8)= -9.02089 # GDT_score(maxd=10,maxw=4)= -8.78936 # GDT_score(maxd=10,maxw=4.2)= -8.57291 # GDT_score(maxd=12,maxw=4.3)= -9.88781 # GDT_score(maxd=12,maxw=4.5)= -9.63295 # GDT_score(maxd=12,maxw=4.7)= -9.36956 # GDT_score(maxd=14,maxw=5.2)= -9.92213 # GDT_score(maxd=14,maxw=5.5)= -9.51689 # command:# request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2004819919.pdb -s /var/tmp/to_scwrl_2004819919.seq -o /var/tmp/from_scwrl_2004819919.pdb > /var/tmp/scwrl_2004819919.log Error: can't open any of /var/tmp/from_scwrl_2004819919.pdb or /var/tmp/from_scwrl_2004819919_b.pdb or /var/tmp/from_scwrl_2004819919_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -9.7561 # GDT_score(maxd=8,maxw=2.9)= -8.54677 # GDT_score(maxd=8,maxw=3.2)= -8.17018 # GDT_score(maxd=8,maxw=3.5)= -7.84619 # GDT_score(maxd=10,maxw=3.8)= -9.06505 # GDT_score(maxd=10,maxw=4)= -8.83131 # GDT_score(maxd=10,maxw=4.2)= -8.59841 # GDT_score(maxd=12,maxw=4.3)= -9.85247 # GDT_score(maxd=12,maxw=4.5)= -9.58236 # GDT_score(maxd=12,maxw=4.7)= -9.29995 # GDT_score(maxd=14,maxw=5.2)= -9.80368 # GDT_score(maxd=14,maxw=5.5)= -9.42858 # command:# request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_385304360.pdb -s /var/tmp/to_scwrl_385304360.seq -o /var/tmp/from_scwrl_385304360.pdb > /var/tmp/scwrl_385304360.log Error: can't open any of /var/tmp/from_scwrl_385304360.pdb or /var/tmp/from_scwrl_385304360_b.pdb or /var/tmp/from_scwrl_385304360_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.717073 # GDT_score = -6.58537 # GDT_score(maxd=8,maxw=2.9)= -6.00828 # GDT_score(maxd=8,maxw=3.2)= -5.80512 # GDT_score(maxd=8,maxw=3.5)= -5.60022 # GDT_score(maxd=10,maxw=3.8)= -6.37622 # GDT_score(maxd=10,maxw=4)= -6.22814 # GDT_score(maxd=10,maxw=4.2)= -6.09416 # GDT_score(maxd=12,maxw=4.3)= -6.95898 # GDT_score(maxd=12,maxw=4.5)= -6.80145 # GDT_score(maxd=12,maxw=4.7)= -6.65733 # GDT_score(maxd=14,maxw=5.2)= -7.10768 # GDT_score(maxd=14,maxw=5.5)= -6.90624 # command:# request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1040635432.pdb -s /var/tmp/to_scwrl_1040635432.seq -o /var/tmp/from_scwrl_1040635432.pdb > /var/tmp/scwrl_1040635432.log Error: can't open any of /var/tmp/from_scwrl_1040635432.pdb or /var/tmp/from_scwrl_1040635432_b.pdb or /var/tmp/from_scwrl_1040635432_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0286.try1-opt2.pdb looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.80488 # GDT_score(maxd=8,maxw=2.9)= -7.5428 # GDT_score(maxd=8,maxw=3.2)= -7.24938 # GDT_score(maxd=8,maxw=3.5)= -7.00431 # GDT_score(maxd=10,maxw=3.8)= -7.74692 # GDT_score(maxd=10,maxw=4)= -7.5785 # GDT_score(maxd=10,maxw=4.2)= -7.40345 # GDT_score(maxd=12,maxw=4.3)= -8.30097 # GDT_score(maxd=12,maxw=4.5)= -8.10548 # GDT_score(maxd=12,maxw=4.7)= -7.92662 # GDT_score(maxd=14,maxw=5.2)= -8.421 # GDT_score(maxd=14,maxw=5.5)= -8.12289 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0286.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.770732 # GDT_score = -6.58537 # GDT_score(maxd=8,maxw=2.9)= -6.01609 # GDT_score(maxd=8,maxw=3.2)= -5.80374 # GDT_score(maxd=8,maxw=3.5)= -5.59896 # GDT_score(maxd=10,maxw=3.8)= -6.38015 # GDT_score(maxd=10,maxw=4)= -6.23188 # GDT_score(maxd=10,maxw=4.2)= -6.09772 # GDT_score(maxd=12,maxw=4.3)= -6.99233 # GDT_score(maxd=12,maxw=4.5)= -6.83333 # GDT_score(maxd=12,maxw=4.7)= -6.68785 # GDT_score(maxd=14,maxw=5.2)= -7.17712 # GDT_score(maxd=14,maxw=5.5)= -6.9719 # command:# ReadConformPDB reading from PDB file T0286.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.829268 # GDT_score = -8.29268 # GDT_score(maxd=8,maxw=2.9)= -7.82913 # GDT_score(maxd=8,maxw=3.2)= -7.55578 # GDT_score(maxd=8,maxw=3.5)= -7.28445 # GDT_score(maxd=10,maxw=3.8)= -8.03454 # GDT_score(maxd=10,maxw=4)= -7.85034 # GDT_score(maxd=10,maxw=4.2)= -7.66234 # GDT_score(maxd=12,maxw=4.3)= -8.54044 # GDT_score(maxd=12,maxw=4.5)= -8.3343 # GDT_score(maxd=12,maxw=4.7)= -8.14571 # GDT_score(maxd=14,maxw=5.2)= -8.5386 # GDT_score(maxd=14,maxw=5.5)= -8.24767 # command:# ReadConformPDB reading from PDB file T0286.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0286.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0286.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0286.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0286.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-15-10.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-15-17.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1840230915.pdb -s /var/tmp/to_scwrl_1840230915.seq -o /var/tmp/from_scwrl_1840230915.pdb > /var/tmp/scwrl_1840230915.log Error: can't open any of /var/tmp/from_scwrl_1840230915.pdb or /var/tmp/from_scwrl_1840230915_b.pdb or /var/tmp/from_scwrl_1840230915_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_229664541.pdb -s /var/tmp/to_scwrl_229664541.seq -o /var/tmp/from_scwrl_229664541.pdb > /var/tmp/scwrl_229664541.log Error: can't open any of /var/tmp/from_scwrl_229664541.pdb or /var/tmp/from_scwrl_229664541_b.pdb or /var/tmp/from_scwrl_229664541_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_200645521.pdb -s /var/tmp/to_scwrl_200645521.seq -o /var/tmp/from_scwrl_200645521.pdb > /var/tmp/scwrl_200645521.log Error: can't open any of /var/tmp/from_scwrl_200645521.pdb or /var/tmp/from_scwrl_200645521_b.pdb or /var/tmp/from_scwrl_200645521_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_404258967.pdb -s /var/tmp/to_scwrl_404258967.seq -o /var/tmp/from_scwrl_404258967.pdb > /var/tmp/scwrl_404258967.log Error: can't open any of /var/tmp/from_scwrl_404258967.pdb or /var/tmp/from_scwrl_404258967_b.pdb or /var/tmp/from_scwrl_404258967_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_557403023.pdb -s /var/tmp/to_scwrl_557403023.seq -o /var/tmp/from_scwrl_557403023.pdb > /var/tmp/scwrl_557403023.log Error: can't open any of /var/tmp/from_scwrl_557403023.pdb or /var/tmp/from_scwrl_557403023_b.pdb or /var/tmp/from_scwrl_557403023_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1704049202.pdb -s /var/tmp/to_scwrl_1704049202.seq -o /var/tmp/from_scwrl_1704049202.pdb > /var/tmp/scwrl_1704049202.log Error: can't open any of /var/tmp/from_scwrl_1704049202.pdb or /var/tmp/from_scwrl_1704049202_b.pdb or /var/tmp/from_scwrl_1704049202_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1656163874.pdb -s /var/tmp/to_scwrl_1656163874.seq -o /var/tmp/from_scwrl_1656163874.pdb > /var/tmp/scwrl_1656163874.log Error: can't open any of /var/tmp/from_scwrl_1656163874.pdb or /var/tmp/from_scwrl_1656163874_b.pdb or /var/tmp/from_scwrl_1656163874_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1066618213.pdb -s /var/tmp/to_scwrl_1066618213.seq -o /var/tmp/from_scwrl_1066618213.pdb > /var/tmp/scwrl_1066618213.log Error: can't open any of /var/tmp/from_scwrl_1066618213.pdb or /var/tmp/from_scwrl_1066618213_b.pdb or /var/tmp/from_scwrl_1066618213_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_698642734.pdb -s /var/tmp/to_scwrl_698642734.seq -o /var/tmp/from_scwrl_698642734.pdb > /var/tmp/scwrl_698642734.log Error: can't open any of /var/tmp/from_scwrl_698642734.pdb or /var/tmp/from_scwrl_698642734_b.pdb or /var/tmp/from_scwrl_698642734_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1911172629.pdb -s /var/tmp/to_scwrl_1911172629.seq -o /var/tmp/from_scwrl_1911172629.pdb > /var/tmp/scwrl_1911172629.log Error: can't open any of /var/tmp/from_scwrl_1911172629.pdb or /var/tmp/from_scwrl_1911172629_b.pdb or /var/tmp/from_scwrl_1911172629_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1985632792.pdb -s /var/tmp/to_scwrl_1985632792.seq -o /var/tmp/from_scwrl_1985632792.pdb > /var/tmp/scwrl_1985632792.log Error: can't open any of /var/tmp/from_scwrl_1985632792.pdb or /var/tmp/from_scwrl_1985632792_b.pdb or /var/tmp/from_scwrl_1985632792_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1853571314.pdb -s /var/tmp/to_scwrl_1853571314.seq -o /var/tmp/from_scwrl_1853571314.pdb > /var/tmp/scwrl_1853571314.log Error: can't open any of /var/tmp/from_scwrl_1853571314.pdb or /var/tmp/from_scwrl_1853571314_b.pdb or /var/tmp/from_scwrl_1853571314_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1549412250.pdb -s /var/tmp/to_scwrl_1549412250.seq -o /var/tmp/from_scwrl_1549412250.pdb > /var/tmp/scwrl_1549412250.log Error: can't open any of /var/tmp/from_scwrl_1549412250.pdb or /var/tmp/from_scwrl_1549412250_b.pdb or /var/tmp/from_scwrl_1549412250_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1210392677.pdb -s /var/tmp/to_scwrl_1210392677.seq -o /var/tmp/from_scwrl_1210392677.pdb > /var/tmp/scwrl_1210392677.log Error: can't open any of /var/tmp/from_scwrl_1210392677.pdb or /var/tmp/from_scwrl_1210392677_b.pdb or /var/tmp/from_scwrl_1210392677_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_602483331.pdb -s /var/tmp/to_scwrl_602483331.seq -o /var/tmp/from_scwrl_602483331.pdb > /var/tmp/scwrl_602483331.log Error: can't open any of /var/tmp/from_scwrl_602483331.pdb or /var/tmp/from_scwrl_602483331_b.pdb or /var/tmp/from_scwrl_602483331_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_659909045.pdb -s /var/tmp/to_scwrl_659909045.seq -o /var/tmp/from_scwrl_659909045.pdb > /var/tmp/scwrl_659909045.log Error: can't open any of /var/tmp/from_scwrl_659909045.pdb or /var/tmp/from_scwrl_659909045_b.pdb or /var/tmp/from_scwrl_659909045_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1897285890.pdb -s /var/tmp/to_scwrl_1897285890.seq -o /var/tmp/from_scwrl_1897285890.pdb > /var/tmp/scwrl_1897285890.log Error: can't open any of /var/tmp/from_scwrl_1897285890.pdb or /var/tmp/from_scwrl_1897285890_b.pdb or /var/tmp/from_scwrl_1897285890_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_264984789.pdb -s /var/tmp/to_scwrl_264984789.seq -o /var/tmp/from_scwrl_264984789.pdb > /var/tmp/scwrl_264984789.log Error: can't open any of /var/tmp/from_scwrl_264984789.pdb or /var/tmp/from_scwrl_264984789_b.pdb or /var/tmp/from_scwrl_264984789_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1824559221.pdb -s /var/tmp/to_scwrl_1824559221.seq -o /var/tmp/from_scwrl_1824559221.pdb > /var/tmp/scwrl_1824559221.log Error: can't open any of /var/tmp/from_scwrl_1824559221.pdb or /var/tmp/from_scwrl_1824559221_b.pdb or /var/tmp/from_scwrl_1824559221_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1754028149.pdb -s /var/tmp/to_scwrl_1754028149.seq -o /var/tmp/from_scwrl_1754028149.pdb > /var/tmp/scwrl_1754028149.log Error: can't open any of /var/tmp/from_scwrl_1754028149.pdb or /var/tmp/from_scwrl_1754028149_b.pdb or /var/tmp/from_scwrl_1754028149_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1882719807.pdb -s /var/tmp/to_scwrl_1882719807.seq -o /var/tmp/from_scwrl_1882719807.pdb > /var/tmp/scwrl_1882719807.log Error: can't open any of /var/tmp/from_scwrl_1882719807.pdb or /var/tmp/from_scwrl_1882719807_b.pdb or /var/tmp/from_scwrl_1882719807_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_536627170.pdb -s /var/tmp/to_scwrl_536627170.seq -o /var/tmp/from_scwrl_536627170.pdb > /var/tmp/scwrl_536627170.log Error: can't open any of /var/tmp/from_scwrl_536627170.pdb or /var/tmp/from_scwrl_536627170_b.pdb or /var/tmp/from_scwrl_536627170_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1291489601.pdb -s /var/tmp/to_scwrl_1291489601.seq -o /var/tmp/from_scwrl_1291489601.pdb > /var/tmp/scwrl_1291489601.log Error: can't open any of /var/tmp/from_scwrl_1291489601.pdb or /var/tmp/from_scwrl_1291489601_b.pdb or /var/tmp/from_scwrl_1291489601_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1194619380.pdb -s /var/tmp/to_scwrl_1194619380.seq -o /var/tmp/from_scwrl_1194619380.pdb > /var/tmp/scwrl_1194619380.log Error: can't open any of /var/tmp/from_scwrl_1194619380.pdb or /var/tmp/from_scwrl_1194619380_b.pdb or /var/tmp/from_scwrl_1194619380_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_797802999.pdb -s /var/tmp/to_scwrl_797802999.seq -o /var/tmp/from_scwrl_797802999.pdb > /var/tmp/scwrl_797802999.log Error: can't open any of /var/tmp/from_scwrl_797802999.pdb or /var/tmp/from_scwrl_797802999_b.pdb or /var/tmp/from_scwrl_797802999_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1860510459.pdb -s /var/tmp/to_scwrl_1860510459.seq -o /var/tmp/from_scwrl_1860510459.pdb > /var/tmp/scwrl_1860510459.log Error: can't open any of /var/tmp/from_scwrl_1860510459.pdb or /var/tmp/from_scwrl_1860510459_b.pdb or /var/tmp/from_scwrl_1860510459_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1986147449.pdb -s /var/tmp/to_scwrl_1986147449.seq -o /var/tmp/from_scwrl_1986147449.pdb > /var/tmp/scwrl_1986147449.log Error: can't open any of /var/tmp/from_scwrl_1986147449.pdb or /var/tmp/from_scwrl_1986147449_b.pdb or /var/tmp/from_scwrl_1986147449_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_20247025.pdb -s /var/tmp/to_scwrl_20247025.seq -o /var/tmp/from_scwrl_20247025.pdb > /var/tmp/scwrl_20247025.log Error: can't open any of /var/tmp/from_scwrl_20247025.pdb or /var/tmp/from_scwrl_20247025_b.pdb or /var/tmp/from_scwrl_20247025_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1717846731.pdb -s /var/tmp/to_scwrl_1717846731.seq -o /var/tmp/from_scwrl_1717846731.pdb > /var/tmp/scwrl_1717846731.log Error: can't open any of /var/tmp/from_scwrl_1717846731.pdb or /var/tmp/from_scwrl_1717846731_b.pdb or /var/tmp/from_scwrl_1717846731_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_223968163.pdb -s /var/tmp/to_scwrl_223968163.seq -o /var/tmp/from_scwrl_223968163.pdb > /var/tmp/scwrl_223968163.log Error: can't open any of /var/tmp/from_scwrl_223968163.pdb or /var/tmp/from_scwrl_223968163_b.pdb or /var/tmp/from_scwrl_223968163_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1060882457.pdb -s /var/tmp/to_scwrl_1060882457.seq -o /var/tmp/from_scwrl_1060882457.pdb > /var/tmp/scwrl_1060882457.log Error: can't open any of /var/tmp/from_scwrl_1060882457.pdb or /var/tmp/from_scwrl_1060882457_b.pdb or /var/tmp/from_scwrl_1060882457_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1410594000.pdb -s /var/tmp/to_scwrl_1410594000.seq -o /var/tmp/from_scwrl_1410594000.pdb > /var/tmp/scwrl_1410594000.log Error: can't open any of /var/tmp/from_scwrl_1410594000.pdb or /var/tmp/from_scwrl_1410594000_b.pdb or /var/tmp/from_scwrl_1410594000_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_453632704.pdb -s /var/tmp/to_scwrl_453632704.seq -o /var/tmp/from_scwrl_453632704.pdb > /var/tmp/scwrl_453632704.log Error: can't open any of /var/tmp/from_scwrl_453632704.pdb or /var/tmp/from_scwrl_453632704_b.pdb or /var/tmp/from_scwrl_453632704_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1261527978.pdb -s /var/tmp/to_scwrl_1261527978.seq -o /var/tmp/from_scwrl_1261527978.pdb > /var/tmp/scwrl_1261527978.log Error: can't open any of /var/tmp/from_scwrl_1261527978.pdb or /var/tmp/from_scwrl_1261527978_b.pdb or /var/tmp/from_scwrl_1261527978_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1814852967.pdb -s /var/tmp/to_scwrl_1814852967.seq -o /var/tmp/from_scwrl_1814852967.pdb > /var/tmp/scwrl_1814852967.log Error: can't open any of /var/tmp/from_scwrl_1814852967.pdb or /var/tmp/from_scwrl_1814852967_b.pdb or /var/tmp/from_scwrl_1814852967_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1011035727.pdb -s /var/tmp/to_scwrl_1011035727.seq -o /var/tmp/from_scwrl_1011035727.pdb > /var/tmp/scwrl_1011035727.log Error: can't open any of /var/tmp/from_scwrl_1011035727.pdb or /var/tmp/from_scwrl_1011035727_b.pdb or /var/tmp/from_scwrl_1011035727_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_818093534.pdb -s /var/tmp/to_scwrl_818093534.seq -o /var/tmp/from_scwrl_818093534.pdb > /var/tmp/scwrl_818093534.log Error: can't open any of /var/tmp/from_scwrl_818093534.pdb or /var/tmp/from_scwrl_818093534_b.pdb or /var/tmp/from_scwrl_818093534_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1323533194.pdb -s /var/tmp/to_scwrl_1323533194.seq -o /var/tmp/from_scwrl_1323533194.pdb > /var/tmp/scwrl_1323533194.log Error: can't open any of /var/tmp/from_scwrl_1323533194.pdb or /var/tmp/from_scwrl_1323533194_b.pdb or /var/tmp/from_scwrl_1323533194_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2077653939.pdb -s /var/tmp/to_scwrl_2077653939.seq -o /var/tmp/from_scwrl_2077653939.pdb > /var/tmp/scwrl_2077653939.log Error: can't open any of /var/tmp/from_scwrl_2077653939.pdb or /var/tmp/from_scwrl_2077653939_b.pdb or /var/tmp/from_scwrl_2077653939_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1516736267.pdb -s /var/tmp/to_scwrl_1516736267.seq -o /var/tmp/from_scwrl_1516736267.pdb > /var/tmp/scwrl_1516736267.log Error: can't open any of /var/tmp/from_scwrl_1516736267.pdb or /var/tmp/from_scwrl_1516736267_b.pdb or /var/tmp/from_scwrl_1516736267_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1087222176.pdb -s /var/tmp/to_scwrl_1087222176.seq -o /var/tmp/from_scwrl_1087222176.pdb > /var/tmp/scwrl_1087222176.log Error: can't open any of /var/tmp/from_scwrl_1087222176.pdb or /var/tmp/from_scwrl_1087222176_b.pdb or /var/tmp/from_scwrl_1087222176_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1915803084.pdb -s /var/tmp/to_scwrl_1915803084.seq -o /var/tmp/from_scwrl_1915803084.pdb > /var/tmp/scwrl_1915803084.log Error: can't open any of /var/tmp/from_scwrl_1915803084.pdb or /var/tmp/from_scwrl_1915803084_b.pdb or /var/tmp/from_scwrl_1915803084_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1222823934.pdb -s /var/tmp/to_scwrl_1222823934.seq -o /var/tmp/from_scwrl_1222823934.pdb > /var/tmp/scwrl_1222823934.log Error: can't open any of /var/tmp/from_scwrl_1222823934.pdb or /var/tmp/from_scwrl_1222823934_b.pdb or /var/tmp/from_scwrl_1222823934_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_489150780.pdb -s /var/tmp/to_scwrl_489150780.seq -o /var/tmp/from_scwrl_489150780.pdb > /var/tmp/scwrl_489150780.log Error: can't open any of /var/tmp/from_scwrl_489150780.pdb or /var/tmp/from_scwrl_489150780_b.pdb or /var/tmp/from_scwrl_489150780_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_978712116.pdb -s /var/tmp/to_scwrl_978712116.seq -o /var/tmp/from_scwrl_978712116.pdb > /var/tmp/scwrl_978712116.log Error: can't open any of /var/tmp/from_scwrl_978712116.pdb or /var/tmp/from_scwrl_978712116_b.pdb or /var/tmp/from_scwrl_978712116_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1825307266.pdb -s /var/tmp/to_scwrl_1825307266.seq -o /var/tmp/from_scwrl_1825307266.pdb > /var/tmp/scwrl_1825307266.log Error: can't open any of /var/tmp/from_scwrl_1825307266.pdb or /var/tmp/from_scwrl_1825307266_b.pdb or /var/tmp/from_scwrl_1825307266_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1149059825.pdb -s /var/tmp/to_scwrl_1149059825.seq -o /var/tmp/from_scwrl_1149059825.pdb > /var/tmp/scwrl_1149059825.log Error: can't open any of /var/tmp/from_scwrl_1149059825.pdb or /var/tmp/from_scwrl_1149059825_b.pdb or /var/tmp/from_scwrl_1149059825_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_728514359.pdb -s /var/tmp/to_scwrl_728514359.seq -o /var/tmp/from_scwrl_728514359.pdb > /var/tmp/scwrl_728514359.log Error: can't open any of /var/tmp/from_scwrl_728514359.pdb or /var/tmp/from_scwrl_728514359_b.pdb or /var/tmp/from_scwrl_728514359_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2090292055.pdb -s /var/tmp/to_scwrl_2090292055.seq -o /var/tmp/from_scwrl_2090292055.pdb > /var/tmp/scwrl_2090292055.log Error: can't open any of /var/tmp/from_scwrl_2090292055.pdb or /var/tmp/from_scwrl_2090292055_b.pdb or /var/tmp/from_scwrl_2090292055_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_826135400.pdb -s /var/tmp/to_scwrl_826135400.seq -o /var/tmp/from_scwrl_826135400.pdb > /var/tmp/scwrl_826135400.log Error: can't open any of /var/tmp/from_scwrl_826135400.pdb or /var/tmp/from_scwrl_826135400_b.pdb or /var/tmp/from_scwrl_826135400_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_335058861.pdb -s /var/tmp/to_scwrl_335058861.seq -o /var/tmp/from_scwrl_335058861.pdb > /var/tmp/scwrl_335058861.log Error: can't open any of /var/tmp/from_scwrl_335058861.pdb or /var/tmp/from_scwrl_335058861_b.pdb or /var/tmp/from_scwrl_335058861_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1825528215.pdb -s /var/tmp/to_scwrl_1825528215.seq -o /var/tmp/from_scwrl_1825528215.pdb > /var/tmp/scwrl_1825528215.log Error: can't open any of /var/tmp/from_scwrl_1825528215.pdb or /var/tmp/from_scwrl_1825528215_b.pdb or /var/tmp/from_scwrl_1825528215_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1362762570.pdb -s /var/tmp/to_scwrl_1362762570.seq -o /var/tmp/from_scwrl_1362762570.pdb > /var/tmp/scwrl_1362762570.log Error: can't open any of /var/tmp/from_scwrl_1362762570.pdb or /var/tmp/from_scwrl_1362762570_b.pdb or /var/tmp/from_scwrl_1362762570_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1626548463.pdb -s /var/tmp/to_scwrl_1626548463.seq -o /var/tmp/from_scwrl_1626548463.pdb > /var/tmp/scwrl_1626548463.log Error: can't open any of /var/tmp/from_scwrl_1626548463.pdb or /var/tmp/from_scwrl_1626548463_b.pdb or /var/tmp/from_scwrl_1626548463_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_872663950.pdb -s /var/tmp/to_scwrl_872663950.seq -o /var/tmp/from_scwrl_872663950.pdb > /var/tmp/scwrl_872663950.log Error: can't open any of /var/tmp/from_scwrl_872663950.pdb or /var/tmp/from_scwrl_872663950_b.pdb or /var/tmp/from_scwrl_872663950_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_13081922.pdb -s /var/tmp/to_scwrl_13081922.seq -o /var/tmp/from_scwrl_13081922.pdb > /var/tmp/scwrl_13081922.log Error: can't open any of /var/tmp/from_scwrl_13081922.pdb or /var/tmp/from_scwrl_13081922_b.pdb or /var/tmp/from_scwrl_13081922_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1339575275.pdb -s /var/tmp/to_scwrl_1339575275.seq -o /var/tmp/from_scwrl_1339575275.pdb > /var/tmp/scwrl_1339575275.log Error: can't open any of /var/tmp/from_scwrl_1339575275.pdb or /var/tmp/from_scwrl_1339575275_b.pdb or /var/tmp/from_scwrl_1339575275_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_711327752.pdb -s /var/tmp/to_scwrl_711327752.seq -o /var/tmp/from_scwrl_711327752.pdb > /var/tmp/scwrl_711327752.log Error: can't open any of /var/tmp/from_scwrl_711327752.pdb or /var/tmp/from_scwrl_711327752_b.pdb or /var/tmp/from_scwrl_711327752_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_33328947.pdb -s /var/tmp/to_scwrl_33328947.seq -o /var/tmp/from_scwrl_33328947.pdb > /var/tmp/scwrl_33328947.log Error: can't open any of /var/tmp/from_scwrl_33328947.pdb or /var/tmp/from_scwrl_33328947_b.pdb or /var/tmp/from_scwrl_33328947_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_909938361.pdb -s /var/tmp/to_scwrl_909938361.seq -o /var/tmp/from_scwrl_909938361.pdb > /var/tmp/scwrl_909938361.log Error: can't open any of /var/tmp/from_scwrl_909938361.pdb or /var/tmp/from_scwrl_909938361_b.pdb or /var/tmp/from_scwrl_909938361_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_935295915.pdb -s /var/tmp/to_scwrl_935295915.seq -o /var/tmp/from_scwrl_935295915.pdb > /var/tmp/scwrl_935295915.log Error: can't open any of /var/tmp/from_scwrl_935295915.pdb or /var/tmp/from_scwrl_935295915_b.pdb or /var/tmp/from_scwrl_935295915_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1094211404.pdb -s /var/tmp/to_scwrl_1094211404.seq -o /var/tmp/from_scwrl_1094211404.pdb > /var/tmp/scwrl_1094211404.log Error: can't open any of /var/tmp/from_scwrl_1094211404.pdb or /var/tmp/from_scwrl_1094211404_b.pdb or /var/tmp/from_scwrl_1094211404_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_173048714.pdb -s /var/tmp/to_scwrl_173048714.seq -o /var/tmp/from_scwrl_173048714.pdb > /var/tmp/scwrl_173048714.log Error: can't open any of /var/tmp/from_scwrl_173048714.pdb or /var/tmp/from_scwrl_173048714_b.pdb or /var/tmp/from_scwrl_173048714_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1388928619.pdb -s /var/tmp/to_scwrl_1388928619.seq -o /var/tmp/from_scwrl_1388928619.pdb > /var/tmp/scwrl_1388928619.log Error: can't open any of /var/tmp/from_scwrl_1388928619.pdb or /var/tmp/from_scwrl_1388928619_b.pdb or /var/tmp/from_scwrl_1388928619_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_208255736.pdb -s /var/tmp/to_scwrl_208255736.seq -o /var/tmp/from_scwrl_208255736.pdb > /var/tmp/scwrl_208255736.log Error: can't open any of /var/tmp/from_scwrl_208255736.pdb or /var/tmp/from_scwrl_208255736_b.pdb or /var/tmp/from_scwrl_208255736_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1987901681.pdb -s /var/tmp/to_scwrl_1987901681.seq -o /var/tmp/from_scwrl_1987901681.pdb > /var/tmp/scwrl_1987901681.log Error: can't open any of /var/tmp/from_scwrl_1987901681.pdb or /var/tmp/from_scwrl_1987901681_b.pdb or /var/tmp/from_scwrl_1987901681_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_252480699.pdb -s /var/tmp/to_scwrl_252480699.seq -o /var/tmp/from_scwrl_252480699.pdb > /var/tmp/scwrl_252480699.log Error: can't open any of /var/tmp/from_scwrl_252480699.pdb or /var/tmp/from_scwrl_252480699_b.pdb or /var/tmp/from_scwrl_252480699_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1026349270.pdb -s /var/tmp/to_scwrl_1026349270.seq -o /var/tmp/from_scwrl_1026349270.pdb > /var/tmp/scwrl_1026349270.log Error: can't open any of /var/tmp/from_scwrl_1026349270.pdb or /var/tmp/from_scwrl_1026349270_b.pdb or /var/tmp/from_scwrl_1026349270_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1163951228.pdb -s /var/tmp/to_scwrl_1163951228.seq -o /var/tmp/from_scwrl_1163951228.pdb > /var/tmp/scwrl_1163951228.log Error: can't open any of /var/tmp/from_scwrl_1163951228.pdb or /var/tmp/from_scwrl_1163951228_b.pdb or /var/tmp/from_scwrl_1163951228_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_182650992.pdb -s /var/tmp/to_scwrl_182650992.seq -o /var/tmp/from_scwrl_182650992.pdb > /var/tmp/scwrl_182650992.log Error: can't open any of /var/tmp/from_scwrl_182650992.pdb or /var/tmp/from_scwrl_182650992_b.pdb or /var/tmp/from_scwrl_182650992_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_395601890.pdb -s /var/tmp/to_scwrl_395601890.seq -o /var/tmp/from_scwrl_395601890.pdb > /var/tmp/scwrl_395601890.log Error: can't open any of /var/tmp/from_scwrl_395601890.pdb or /var/tmp/from_scwrl_395601890_b.pdb or /var/tmp/from_scwrl_395601890_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_103689758.pdb -s /var/tmp/to_scwrl_103689758.seq -o /var/tmp/from_scwrl_103689758.pdb > /var/tmp/scwrl_103689758.log Error: can't open any of /var/tmp/from_scwrl_103689758.pdb or /var/tmp/from_scwrl_103689758_b.pdb or /var/tmp/from_scwrl_103689758_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2098454076.pdb -s /var/tmp/to_scwrl_2098454076.seq -o /var/tmp/from_scwrl_2098454076.pdb > /var/tmp/scwrl_2098454076.log Error: can't open any of /var/tmp/from_scwrl_2098454076.pdb or /var/tmp/from_scwrl_2098454076_b.pdb or /var/tmp/from_scwrl_2098454076_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1618425825.pdb -s /var/tmp/to_scwrl_1618425825.seq -o /var/tmp/from_scwrl_1618425825.pdb > /var/tmp/scwrl_1618425825.log Error: can't open any of /var/tmp/from_scwrl_1618425825.pdb or /var/tmp/from_scwrl_1618425825_b.pdb or /var/tmp/from_scwrl_1618425825_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_592840538.pdb -s /var/tmp/to_scwrl_592840538.seq -o /var/tmp/from_scwrl_592840538.pdb > /var/tmp/scwrl_592840538.log Error: can't open any of /var/tmp/from_scwrl_592840538.pdb or /var/tmp/from_scwrl_592840538_b.pdb or /var/tmp/from_scwrl_592840538_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_929682545.pdb -s /var/tmp/to_scwrl_929682545.seq -o /var/tmp/from_scwrl_929682545.pdb > /var/tmp/scwrl_929682545.log Error: can't open any of /var/tmp/from_scwrl_929682545.pdb or /var/tmp/from_scwrl_929682545_b.pdb or /var/tmp/from_scwrl_929682545_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1296249444.pdb -s /var/tmp/to_scwrl_1296249444.seq -o /var/tmp/from_scwrl_1296249444.pdb > /var/tmp/scwrl_1296249444.log Error: can't open any of /var/tmp/from_scwrl_1296249444.pdb or /var/tmp/from_scwrl_1296249444_b.pdb or /var/tmp/from_scwrl_1296249444_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1741900363.pdb -s /var/tmp/to_scwrl_1741900363.seq -o /var/tmp/from_scwrl_1741900363.pdb > /var/tmp/scwrl_1741900363.log Error: can't open any of /var/tmp/from_scwrl_1741900363.pdb or /var/tmp/from_scwrl_1741900363_b.pdb or /var/tmp/from_scwrl_1741900363_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1658196903.pdb -s /var/tmp/to_scwrl_1658196903.seq -o /var/tmp/from_scwrl_1658196903.pdb > /var/tmp/scwrl_1658196903.log Error: can't open any of /var/tmp/from_scwrl_1658196903.pdb or /var/tmp/from_scwrl_1658196903_b.pdb or /var/tmp/from_scwrl_1658196903_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1239057852.pdb -s /var/tmp/to_scwrl_1239057852.seq -o /var/tmp/from_scwrl_1239057852.pdb > /var/tmp/scwrl_1239057852.log Error: can't open any of /var/tmp/from_scwrl_1239057852.pdb or /var/tmp/from_scwrl_1239057852_b.pdb or /var/tmp/from_scwrl_1239057852_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_420552117.pdb -s /var/tmp/to_scwrl_420552117.seq -o /var/tmp/from_scwrl_420552117.pdb > /var/tmp/scwrl_420552117.log Error: can't open any of /var/tmp/from_scwrl_420552117.pdb or /var/tmp/from_scwrl_420552117_b.pdb or /var/tmp/from_scwrl_420552117_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1993255765.pdb -s /var/tmp/to_scwrl_1993255765.seq -o /var/tmp/from_scwrl_1993255765.pdb > /var/tmp/scwrl_1993255765.log Error: can't open any of /var/tmp/from_scwrl_1993255765.pdb or /var/tmp/from_scwrl_1993255765_b.pdb or /var/tmp/from_scwrl_1993255765_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_917102421.pdb -s /var/tmp/to_scwrl_917102421.seq -o /var/tmp/from_scwrl_917102421.pdb > /var/tmp/scwrl_917102421.log Error: can't open any of /var/tmp/from_scwrl_917102421.pdb or /var/tmp/from_scwrl_917102421_b.pdb or /var/tmp/from_scwrl_917102421_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1783314687.pdb -s /var/tmp/to_scwrl_1783314687.seq -o /var/tmp/from_scwrl_1783314687.pdb > /var/tmp/scwrl_1783314687.log Error: can't open any of /var/tmp/from_scwrl_1783314687.pdb or /var/tmp/from_scwrl_1783314687_b.pdb or /var/tmp/from_scwrl_1783314687_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1472320581.pdb -s /var/tmp/to_scwrl_1472320581.seq -o /var/tmp/from_scwrl_1472320581.pdb > /var/tmp/scwrl_1472320581.log Error: can't open any of /var/tmp/from_scwrl_1472320581.pdb or /var/tmp/from_scwrl_1472320581_b.pdb or /var/tmp/from_scwrl_1472320581_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1789766370.pdb -s /var/tmp/to_scwrl_1789766370.seq -o /var/tmp/from_scwrl_1789766370.pdb > /var/tmp/scwrl_1789766370.log Error: can't open any of /var/tmp/from_scwrl_1789766370.pdb or /var/tmp/from_scwrl_1789766370_b.pdb or /var/tmp/from_scwrl_1789766370_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1796396609.pdb -s /var/tmp/to_scwrl_1796396609.seq -o /var/tmp/from_scwrl_1796396609.pdb > /var/tmp/scwrl_1796396609.log Error: can't open any of /var/tmp/from_scwrl_1796396609.pdb or /var/tmp/from_scwrl_1796396609_b.pdb or /var/tmp/from_scwrl_1796396609_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_664412210.pdb -s /var/tmp/to_scwrl_664412210.seq -o /var/tmp/from_scwrl_664412210.pdb > /var/tmp/scwrl_664412210.log Error: can't open any of /var/tmp/from_scwrl_664412210.pdb or /var/tmp/from_scwrl_664412210_b.pdb or /var/tmp/from_scwrl_664412210_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_353610476.pdb -s /var/tmp/to_scwrl_353610476.seq -o /var/tmp/from_scwrl_353610476.pdb > /var/tmp/scwrl_353610476.log Error: can't open any of /var/tmp/from_scwrl_353610476.pdb or /var/tmp/from_scwrl_353610476_b.pdb or /var/tmp/from_scwrl_353610476_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1829725556.pdb -s /var/tmp/to_scwrl_1829725556.seq -o /var/tmp/from_scwrl_1829725556.pdb > /var/tmp/scwrl_1829725556.log Error: can't open any of /var/tmp/from_scwrl_1829725556.pdb or /var/tmp/from_scwrl_1829725556_b.pdb or /var/tmp/from_scwrl_1829725556_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1574350570.pdb -s /var/tmp/to_scwrl_1574350570.seq -o /var/tmp/from_scwrl_1574350570.pdb > /var/tmp/scwrl_1574350570.log Error: can't open any of /var/tmp/from_scwrl_1574350570.pdb or /var/tmp/from_scwrl_1574350570_b.pdb or /var/tmp/from_scwrl_1574350570_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1288906390.pdb -s /var/tmp/to_scwrl_1288906390.seq -o /var/tmp/from_scwrl_1288906390.pdb > /var/tmp/scwrl_1288906390.log Error: can't open any of /var/tmp/from_scwrl_1288906390.pdb or /var/tmp/from_scwrl_1288906390_b.pdb or /var/tmp/from_scwrl_1288906390_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_776453314.pdb -s /var/tmp/to_scwrl_776453314.seq -o /var/tmp/from_scwrl_776453314.pdb > /var/tmp/scwrl_776453314.log Error: can't open any of /var/tmp/from_scwrl_776453314.pdb or /var/tmp/from_scwrl_776453314_b.pdb or /var/tmp/from_scwrl_776453314_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1747399284.pdb -s /var/tmp/to_scwrl_1747399284.seq -o /var/tmp/from_scwrl_1747399284.pdb > /var/tmp/scwrl_1747399284.log Error: can't open any of /var/tmp/from_scwrl_1747399284.pdb or /var/tmp/from_scwrl_1747399284_b.pdb or /var/tmp/from_scwrl_1747399284_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_530351363.pdb -s /var/tmp/to_scwrl_530351363.seq -o /var/tmp/from_scwrl_530351363.pdb > /var/tmp/scwrl_530351363.log Error: can't open any of /var/tmp/from_scwrl_530351363.pdb or /var/tmp/from_scwrl_530351363_b.pdb or /var/tmp/from_scwrl_530351363_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_984709050.pdb -s /var/tmp/to_scwrl_984709050.seq -o /var/tmp/from_scwrl_984709050.pdb > /var/tmp/scwrl_984709050.log Error: can't open any of /var/tmp/from_scwrl_984709050.pdb or /var/tmp/from_scwrl_984709050_b.pdb or /var/tmp/from_scwrl_984709050_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1587817318.pdb -s /var/tmp/to_scwrl_1587817318.seq -o /var/tmp/from_scwrl_1587817318.pdb > /var/tmp/scwrl_1587817318.log Error: can't open any of /var/tmp/from_scwrl_1587817318.pdb or /var/tmp/from_scwrl_1587817318_b.pdb or /var/tmp/from_scwrl_1587817318_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_782832063.pdb -s /var/tmp/to_scwrl_782832063.seq -o /var/tmp/from_scwrl_782832063.pdb > /var/tmp/scwrl_782832063.log Error: can't open any of /var/tmp/from_scwrl_782832063.pdb or /var/tmp/from_scwrl_782832063_b.pdb or /var/tmp/from_scwrl_782832063_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2011058319.pdb -s /var/tmp/to_scwrl_2011058319.seq -o /var/tmp/from_scwrl_2011058319.pdb > /var/tmp/scwrl_2011058319.log Error: can't open any of /var/tmp/from_scwrl_2011058319.pdb or /var/tmp/from_scwrl_2011058319_b.pdb or /var/tmp/from_scwrl_2011058319_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_604284900.pdb -s /var/tmp/to_scwrl_604284900.seq -o /var/tmp/from_scwrl_604284900.pdb > /var/tmp/scwrl_604284900.log Error: can't open any of /var/tmp/from_scwrl_604284900.pdb or /var/tmp/from_scwrl_604284900_b.pdb or /var/tmp/from_scwrl_604284900_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_965483055.pdb -s /var/tmp/to_scwrl_965483055.seq -o /var/tmp/from_scwrl_965483055.pdb > /var/tmp/scwrl_965483055.log Error: can't open any of /var/tmp/from_scwrl_965483055.pdb or /var/tmp/from_scwrl_965483055_b.pdb or /var/tmp/from_scwrl_965483055_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_259176563.pdb -s /var/tmp/to_scwrl_259176563.seq -o /var/tmp/from_scwrl_259176563.pdb > /var/tmp/scwrl_259176563.log Error: can't open any of /var/tmp/from_scwrl_259176563.pdb or /var/tmp/from_scwrl_259176563_b.pdb or /var/tmp/from_scwrl_259176563_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_707974658.pdb -s /var/tmp/to_scwrl_707974658.seq -o /var/tmp/from_scwrl_707974658.pdb > /var/tmp/scwrl_707974658.log Error: can't open any of /var/tmp/from_scwrl_707974658.pdb or /var/tmp/from_scwrl_707974658_b.pdb or /var/tmp/from_scwrl_707974658_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_916453484.pdb -s /var/tmp/to_scwrl_916453484.seq -o /var/tmp/from_scwrl_916453484.pdb > /var/tmp/scwrl_916453484.log Error: can't open any of /var/tmp/from_scwrl_916453484.pdb or /var/tmp/from_scwrl_916453484_b.pdb or /var/tmp/from_scwrl_916453484_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_AL1.pdb.gz failed. # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1877602388.pdb -s /var/tmp/to_scwrl_1877602388.seq -o /var/tmp/from_scwrl_1877602388.pdb > /var/tmp/scwrl_1877602388.log Error: can't open any of /var/tmp/from_scwrl_1877602388.pdb or /var/tmp/from_scwrl_1877602388_b.pdb or /var/tmp/from_scwrl_1877602388_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed. # naming current conformation MIG_FROST_FLEX_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1300815196.pdb -s /var/tmp/to_scwrl_1300815196.seq -o /var/tmp/from_scwrl_1300815196.pdb > /var/tmp/scwrl_1300815196.log Error: can't open any of /var/tmp/from_scwrl_1300815196.pdb or /var/tmp/from_scwrl_1300815196_b.pdb or /var/tmp/from_scwrl_1300815196_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_FLEX_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1846136029.pdb -s /var/tmp/to_scwrl_1846136029.seq -o /var/tmp/from_scwrl_1846136029.pdb > /var/tmp/scwrl_1846136029.log Error: can't open any of /var/tmp/from_scwrl_1846136029.pdb or /var/tmp/from_scwrl_1846136029_b.pdb or /var/tmp/from_scwrl_1846136029_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1026368186.pdb -s /var/tmp/to_scwrl_1026368186.seq -o /var/tmp/from_scwrl_1026368186.pdb > /var/tmp/scwrl_1026368186.log Error: can't open any of /var/tmp/from_scwrl_1026368186.pdb or /var/tmp/from_scwrl_1026368186_b.pdb or /var/tmp/from_scwrl_1026368186_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_895231913.pdb -s /var/tmp/to_scwrl_895231913.seq -o /var/tmp/from_scwrl_895231913.pdb > /var/tmp/scwrl_895231913.log Error: can't open any of /var/tmp/from_scwrl_895231913.pdb or /var/tmp/from_scwrl_895231913_b.pdb or /var/tmp/from_scwrl_895231913_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1356849285.pdb -s /var/tmp/to_scwrl_1356849285.seq -o /var/tmp/from_scwrl_1356849285.pdb > /var/tmp/scwrl_1356849285.log Error: can't open any of /var/tmp/from_scwrl_1356849285.pdb or /var/tmp/from_scwrl_1356849285_b.pdb or /var/tmp/from_scwrl_1356849285_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_117942391.pdb -s /var/tmp/to_scwrl_117942391.seq -o /var/tmp/from_scwrl_117942391.pdb > /var/tmp/scwrl_117942391.log Error: can't open any of /var/tmp/from_scwrl_117942391.pdb or /var/tmp/from_scwrl_117942391_b.pdb or /var/tmp/from_scwrl_117942391_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1315784029.pdb -s /var/tmp/to_scwrl_1315784029.seq -o /var/tmp/from_scwrl_1315784029.pdb > /var/tmp/scwrl_1315784029.log Error: can't open any of /var/tmp/from_scwrl_1315784029.pdb or /var/tmp/from_scwrl_1315784029_b.pdb or /var/tmp/from_scwrl_1315784029_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1202621403.pdb -s /var/tmp/to_scwrl_1202621403.seq -o /var/tmp/from_scwrl_1202621403.pdb > /var/tmp/scwrl_1202621403.log Error: can't open any of /var/tmp/from_scwrl_1202621403.pdb or /var/tmp/from_scwrl_1202621403_b.pdb or /var/tmp/from_scwrl_1202621403_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1035044812.pdb -s /var/tmp/to_scwrl_1035044812.seq -o /var/tmp/from_scwrl_1035044812.pdb > /var/tmp/scwrl_1035044812.log Error: can't open any of /var/tmp/from_scwrl_1035044812.pdb or /var/tmp/from_scwrl_1035044812_b.pdb or /var/tmp/from_scwrl_1035044812_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_951615070.pdb -s /var/tmp/to_scwrl_951615070.seq -o /var/tmp/from_scwrl_951615070.pdb > /var/tmp/scwrl_951615070.log Error: can't open any of /var/tmp/from_scwrl_951615070.pdb or /var/tmp/from_scwrl_951615070_b.pdb or /var/tmp/from_scwrl_951615070_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_527458338.pdb -s /var/tmp/to_scwrl_527458338.seq -o /var/tmp/from_scwrl_527458338.pdb > /var/tmp/scwrl_527458338.log Error: can't open any of /var/tmp/from_scwrl_527458338.pdb or /var/tmp/from_scwrl_527458338_b.pdb or /var/tmp/from_scwrl_527458338_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_677327536.pdb -s /var/tmp/to_scwrl_677327536.seq -o /var/tmp/from_scwrl_677327536.pdb > /var/tmp/scwrl_677327536.log Error: can't open any of /var/tmp/from_scwrl_677327536.pdb or /var/tmp/from_scwrl_677327536_b.pdb or /var/tmp/from_scwrl_677327536_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_600528032.pdb -s /var/tmp/to_scwrl_600528032.seq -o /var/tmp/from_scwrl_600528032.pdb > /var/tmp/scwrl_600528032.log Error: can't open any of /var/tmp/from_scwrl_600528032.pdb or /var/tmp/from_scwrl_600528032_b.pdb or /var/tmp/from_scwrl_600528032_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1191870548.pdb -s /var/tmp/to_scwrl_1191870548.seq -o /var/tmp/from_scwrl_1191870548.pdb > /var/tmp/scwrl_1191870548.log Error: can't open any of /var/tmp/from_scwrl_1191870548.pdb or /var/tmp/from_scwrl_1191870548_b.pdb or /var/tmp/from_scwrl_1191870548_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1030938012.pdb -s /var/tmp/to_scwrl_1030938012.seq -o /var/tmp/from_scwrl_1030938012.pdb > /var/tmp/scwrl_1030938012.log Error: can't open any of /var/tmp/from_scwrl_1030938012.pdb or /var/tmp/from_scwrl_1030938012_b.pdb or /var/tmp/from_scwrl_1030938012_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_282769942.pdb -s /var/tmp/to_scwrl_282769942.seq -o /var/tmp/from_scwrl_282769942.pdb > /var/tmp/scwrl_282769942.log Error: can't open any of /var/tmp/from_scwrl_282769942.pdb or /var/tmp/from_scwrl_282769942_b.pdb or /var/tmp/from_scwrl_282769942_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_618737472.pdb -s /var/tmp/to_scwrl_618737472.seq -o /var/tmp/from_scwrl_618737472.pdb > /var/tmp/scwrl_618737472.log Error: can't open any of /var/tmp/from_scwrl_618737472.pdb or /var/tmp/from_scwrl_618737472_b.pdb or /var/tmp/from_scwrl_618737472_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_172360755.pdb -s /var/tmp/to_scwrl_172360755.seq -o /var/tmp/from_scwrl_172360755.pdb > /var/tmp/scwrl_172360755.log Error: can't open any of /var/tmp/from_scwrl_172360755.pdb or /var/tmp/from_scwrl_172360755_b.pdb or /var/tmp/from_scwrl_172360755_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1059223256.pdb -s /var/tmp/to_scwrl_1059223256.seq -o /var/tmp/from_scwrl_1059223256.pdb > /var/tmp/scwrl_1059223256.log Error: can't open any of /var/tmp/from_scwrl_1059223256.pdb or /var/tmp/from_scwrl_1059223256_b.pdb or /var/tmp/from_scwrl_1059223256_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_218653110.pdb -s /var/tmp/to_scwrl_218653110.seq -o /var/tmp/from_scwrl_218653110.pdb > /var/tmp/scwrl_218653110.log Error: can't open any of /var/tmp/from_scwrl_218653110.pdb or /var/tmp/from_scwrl_218653110_b.pdb or /var/tmp/from_scwrl_218653110_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_702712119.pdb -s /var/tmp/to_scwrl_702712119.seq -o /var/tmp/from_scwrl_702712119.pdb > /var/tmp/scwrl_702712119.log Error: can't open any of /var/tmp/from_scwrl_702712119.pdb or /var/tmp/from_scwrl_702712119_b.pdb or /var/tmp/from_scwrl_702712119_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2043932306.pdb -s /var/tmp/to_scwrl_2043932306.seq -o /var/tmp/from_scwrl_2043932306.pdb > /var/tmp/scwrl_2043932306.log Error: can't open any of /var/tmp/from_scwrl_2043932306.pdb or /var/tmp/from_scwrl_2043932306_b.pdb or /var/tmp/from_scwrl_2043932306_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1806470428.pdb -s /var/tmp/to_scwrl_1806470428.seq -o /var/tmp/from_scwrl_1806470428.pdb > /var/tmp/scwrl_1806470428.log Error: can't open any of /var/tmp/from_scwrl_1806470428.pdb or /var/tmp/from_scwrl_1806470428_b.pdb or /var/tmp/from_scwrl_1806470428_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1485544181.pdb -s /var/tmp/to_scwrl_1485544181.seq -o /var/tmp/from_scwrl_1485544181.pdb > /var/tmp/scwrl_1485544181.log Error: can't open any of /var/tmp/from_scwrl_1485544181.pdb or /var/tmp/from_scwrl_1485544181_b.pdb or /var/tmp/from_scwrl_1485544181_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1907506978.pdb -s /var/tmp/to_scwrl_1907506978.seq -o /var/tmp/from_scwrl_1907506978.pdb > /var/tmp/scwrl_1907506978.log Error: can't open any of /var/tmp/from_scwrl_1907506978.pdb or /var/tmp/from_scwrl_1907506978_b.pdb or /var/tmp/from_scwrl_1907506978_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_263271682.pdb -s /var/tmp/to_scwrl_263271682.seq -o /var/tmp/from_scwrl_263271682.pdb > /var/tmp/scwrl_263271682.log Error: can't open any of /var/tmp/from_scwrl_263271682.pdb or /var/tmp/from_scwrl_263271682_b.pdb or /var/tmp/from_scwrl_263271682_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_303543589.pdb -s /var/tmp/to_scwrl_303543589.seq -o /var/tmp/from_scwrl_303543589.pdb > /var/tmp/scwrl_303543589.log Error: can't open any of /var/tmp/from_scwrl_303543589.pdb or /var/tmp/from_scwrl_303543589_b.pdb or /var/tmp/from_scwrl_303543589_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_19199894.pdb -s /var/tmp/to_scwrl_19199894.seq -o /var/tmp/from_scwrl_19199894.pdb > /var/tmp/scwrl_19199894.log Error: can't open any of /var/tmp/from_scwrl_19199894.pdb or /var/tmp/from_scwrl_19199894_b.pdb or /var/tmp/from_scwrl_19199894_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_971246340.pdb -s /var/tmp/to_scwrl_971246340.seq -o /var/tmp/from_scwrl_971246340.pdb > /var/tmp/scwrl_971246340.log Error: can't open any of /var/tmp/from_scwrl_971246340.pdb or /var/tmp/from_scwrl_971246340_b.pdb or /var/tmp/from_scwrl_971246340_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1219997072.pdb -s /var/tmp/to_scwrl_1219997072.seq -o /var/tmp/from_scwrl_1219997072.pdb > /var/tmp/scwrl_1219997072.log Error: can't open any of /var/tmp/from_scwrl_1219997072.pdb or /var/tmp/from_scwrl_1219997072_b.pdb or /var/tmp/from_scwrl_1219997072_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1896802282.pdb -s /var/tmp/to_scwrl_1896802282.seq -o /var/tmp/from_scwrl_1896802282.pdb > /var/tmp/scwrl_1896802282.log Error: can't open any of /var/tmp/from_scwrl_1896802282.pdb or /var/tmp/from_scwrl_1896802282_b.pdb or /var/tmp/from_scwrl_1896802282_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_124577889.pdb -s /var/tmp/to_scwrl_124577889.seq -o /var/tmp/from_scwrl_124577889.pdb > /var/tmp/scwrl_124577889.log Error: can't open any of /var/tmp/from_scwrl_124577889.pdb or /var/tmp/from_scwrl_124577889_b.pdb or /var/tmp/from_scwrl_124577889_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_918649455.pdb -s /var/tmp/to_scwrl_918649455.seq -o /var/tmp/from_scwrl_918649455.pdb > /var/tmp/scwrl_918649455.log Error: can't open any of /var/tmp/from_scwrl_918649455.pdb or /var/tmp/from_scwrl_918649455_b.pdb or /var/tmp/from_scwrl_918649455_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_775686821.pdb -s /var/tmp/to_scwrl_775686821.seq -o /var/tmp/from_scwrl_775686821.pdb > /var/tmp/scwrl_775686821.log Error: can't open any of /var/tmp/from_scwrl_775686821.pdb or /var/tmp/from_scwrl_775686821_b.pdb or /var/tmp/from_scwrl_775686821_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1019809803.pdb -s /var/tmp/to_scwrl_1019809803.seq -o /var/tmp/from_scwrl_1019809803.pdb > /var/tmp/scwrl_1019809803.log Error: can't open any of /var/tmp/from_scwrl_1019809803.pdb or /var/tmp/from_scwrl_1019809803_b.pdb or /var/tmp/from_scwrl_1019809803_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_128015094.pdb -s /var/tmp/to_scwrl_128015094.seq -o /var/tmp/from_scwrl_128015094.pdb > /var/tmp/scwrl_128015094.log Error: can't open any of /var/tmp/from_scwrl_128015094.pdb or /var/tmp/from_scwrl_128015094_b.pdb or /var/tmp/from_scwrl_128015094_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_893629212.pdb -s /var/tmp/to_scwrl_893629212.seq -o /var/tmp/from_scwrl_893629212.pdb > /var/tmp/scwrl_893629212.log Error: can't open any of /var/tmp/from_scwrl_893629212.pdb or /var/tmp/from_scwrl_893629212_b.pdb or /var/tmp/from_scwrl_893629212_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_188110185.pdb -s /var/tmp/to_scwrl_188110185.seq -o /var/tmp/from_scwrl_188110185.pdb > /var/tmp/scwrl_188110185.log Error: can't open any of /var/tmp/from_scwrl_188110185.pdb or /var/tmp/from_scwrl_188110185_b.pdb or /var/tmp/from_scwrl_188110185_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1330636497.pdb -s /var/tmp/to_scwrl_1330636497.seq -o /var/tmp/from_scwrl_1330636497.pdb > /var/tmp/scwrl_1330636497.log Error: can't open any of /var/tmp/from_scwrl_1330636497.pdb or /var/tmp/from_scwrl_1330636497_b.pdb or /var/tmp/from_scwrl_1330636497_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1928674024.pdb -s /var/tmp/to_scwrl_1928674024.seq -o /var/tmp/from_scwrl_1928674024.pdb > /var/tmp/scwrl_1928674024.log Error: can't open any of /var/tmp/from_scwrl_1928674024.pdb or /var/tmp/from_scwrl_1928674024_b.pdb or /var/tmp/from_scwrl_1928674024_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1139725255.pdb -s /var/tmp/to_scwrl_1139725255.seq -o /var/tmp/from_scwrl_1139725255.pdb > /var/tmp/scwrl_1139725255.log Error: can't open any of /var/tmp/from_scwrl_1139725255.pdb or /var/tmp/from_scwrl_1139725255_b.pdb or /var/tmp/from_scwrl_1139725255_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1858094836.pdb -s /var/tmp/to_scwrl_1858094836.seq -o /var/tmp/from_scwrl_1858094836.pdb > /var/tmp/scwrl_1858094836.log Error: can't open any of /var/tmp/from_scwrl_1858094836.pdb or /var/tmp/from_scwrl_1858094836_b.pdb or /var/tmp/from_scwrl_1858094836_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_458517913.pdb -s /var/tmp/to_scwrl_458517913.seq -o /var/tmp/from_scwrl_458517913.pdb > /var/tmp/scwrl_458517913.log Error: can't open any of /var/tmp/from_scwrl_458517913.pdb or /var/tmp/from_scwrl_458517913_b.pdb or /var/tmp/from_scwrl_458517913_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1740253287.pdb -s /var/tmp/to_scwrl_1740253287.seq -o /var/tmp/from_scwrl_1740253287.pdb > /var/tmp/scwrl_1740253287.log Error: can't open any of /var/tmp/from_scwrl_1740253287.pdb or /var/tmp/from_scwrl_1740253287_b.pdb or /var/tmp/from_scwrl_1740253287_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_902481738.pdb -s /var/tmp/to_scwrl_902481738.seq -o /var/tmp/from_scwrl_902481738.pdb > /var/tmp/scwrl_902481738.log Error: can't open any of /var/tmp/from_scwrl_902481738.pdb or /var/tmp/from_scwrl_902481738_b.pdb or /var/tmp/from_scwrl_902481738_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1489455924.pdb -s /var/tmp/to_scwrl_1489455924.seq -o /var/tmp/from_scwrl_1489455924.pdb > /var/tmp/scwrl_1489455924.log Error: can't open any of /var/tmp/from_scwrl_1489455924.pdb or /var/tmp/from_scwrl_1489455924_b.pdb or /var/tmp/from_scwrl_1489455924_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2023023229.pdb -s /var/tmp/to_scwrl_2023023229.seq -o /var/tmp/from_scwrl_2023023229.pdb > /var/tmp/scwrl_2023023229.log Error: can't open any of /var/tmp/from_scwrl_2023023229.pdb or /var/tmp/from_scwrl_2023023229_b.pdb or /var/tmp/from_scwrl_2023023229_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1521219209.pdb -s /var/tmp/to_scwrl_1521219209.seq -o /var/tmp/from_scwrl_1521219209.pdb > /var/tmp/scwrl_1521219209.log Error: can't open any of /var/tmp/from_scwrl_1521219209.pdb or /var/tmp/from_scwrl_1521219209_b.pdb or /var/tmp/from_scwrl_1521219209_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1661816679.pdb -s /var/tmp/to_scwrl_1661816679.seq -o /var/tmp/from_scwrl_1661816679.pdb > /var/tmp/scwrl_1661816679.log Error: can't open any of /var/tmp/from_scwrl_1661816679.pdb or /var/tmp/from_scwrl_1661816679_b.pdb or /var/tmp/from_scwrl_1661816679_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_934762839.pdb -s /var/tmp/to_scwrl_934762839.seq -o /var/tmp/from_scwrl_934762839.pdb > /var/tmp/scwrl_934762839.log Error: can't open any of /var/tmp/from_scwrl_934762839.pdb or /var/tmp/from_scwrl_934762839_b.pdb or /var/tmp/from_scwrl_934762839_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1739872319.pdb -s /var/tmp/to_scwrl_1739872319.seq -o /var/tmp/from_scwrl_1739872319.pdb > /var/tmp/scwrl_1739872319.log Error: can't open any of /var/tmp/from_scwrl_1739872319.pdb or /var/tmp/from_scwrl_1739872319_b.pdb or /var/tmp/from_scwrl_1739872319_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_217045151.pdb -s /var/tmp/to_scwrl_217045151.seq -o /var/tmp/from_scwrl_217045151.pdb > /var/tmp/scwrl_217045151.log Error: can't open any of /var/tmp/from_scwrl_217045151.pdb or /var/tmp/from_scwrl_217045151_b.pdb or /var/tmp/from_scwrl_217045151_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_831211498.pdb -s /var/tmp/to_scwrl_831211498.seq -o /var/tmp/from_scwrl_831211498.pdb > /var/tmp/scwrl_831211498.log Error: can't open any of /var/tmp/from_scwrl_831211498.pdb or /var/tmp/from_scwrl_831211498_b.pdb or /var/tmp/from_scwrl_831211498_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1398859101.pdb -s /var/tmp/to_scwrl_1398859101.seq -o /var/tmp/from_scwrl_1398859101.pdb > /var/tmp/scwrl_1398859101.log Error: can't open any of /var/tmp/from_scwrl_1398859101.pdb or /var/tmp/from_scwrl_1398859101_b.pdb or /var/tmp/from_scwrl_1398859101_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1702589332.pdb -s /var/tmp/to_scwrl_1702589332.seq -o /var/tmp/from_scwrl_1702589332.pdb > /var/tmp/scwrl_1702589332.log Error: can't open any of /var/tmp/from_scwrl_1702589332.pdb or /var/tmp/from_scwrl_1702589332_b.pdb or /var/tmp/from_scwrl_1702589332_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_591234829.pdb -s /var/tmp/to_scwrl_591234829.seq -o /var/tmp/from_scwrl_591234829.pdb > /var/tmp/scwrl_591234829.log Error: can't open any of /var/tmp/from_scwrl_591234829.pdb or /var/tmp/from_scwrl_591234829_b.pdb or /var/tmp/from_scwrl_591234829_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1662130783.pdb -s /var/tmp/to_scwrl_1662130783.seq -o /var/tmp/from_scwrl_1662130783.pdb > /var/tmp/scwrl_1662130783.log Error: can't open any of /var/tmp/from_scwrl_1662130783.pdb or /var/tmp/from_scwrl_1662130783_b.pdb or /var/tmp/from_scwrl_1662130783_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2006132921.pdb -s /var/tmp/to_scwrl_2006132921.seq -o /var/tmp/from_scwrl_2006132921.pdb > /var/tmp/scwrl_2006132921.log Error: can't open any of /var/tmp/from_scwrl_2006132921.pdb or /var/tmp/from_scwrl_2006132921_b.pdb or /var/tmp/from_scwrl_2006132921_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_610434724.pdb -s /var/tmp/to_scwrl_610434724.seq -o /var/tmp/from_scwrl_610434724.pdb > /var/tmp/scwrl_610434724.log Error: can't open any of /var/tmp/from_scwrl_610434724.pdb or /var/tmp/from_scwrl_610434724_b.pdb or /var/tmp/from_scwrl_610434724_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_485893476.pdb -s /var/tmp/to_scwrl_485893476.seq -o /var/tmp/from_scwrl_485893476.pdb > /var/tmp/scwrl_485893476.log Error: can't open any of /var/tmp/from_scwrl_485893476.pdb or /var/tmp/from_scwrl_485893476_b.pdb or /var/tmp/from_scwrl_485893476_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1078646347.pdb -s /var/tmp/to_scwrl_1078646347.seq -o /var/tmp/from_scwrl_1078646347.pdb > /var/tmp/scwrl_1078646347.log Error: can't open any of /var/tmp/from_scwrl_1078646347.pdb or /var/tmp/from_scwrl_1078646347_b.pdb or /var/tmp/from_scwrl_1078646347_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_359753359.pdb -s /var/tmp/to_scwrl_359753359.seq -o /var/tmp/from_scwrl_359753359.pdb > /var/tmp/scwrl_359753359.log Error: can't open any of /var/tmp/from_scwrl_359753359.pdb or /var/tmp/from_scwrl_359753359_b.pdb or /var/tmp/from_scwrl_359753359_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_610471366.pdb -s /var/tmp/to_scwrl_610471366.seq -o /var/tmp/from_scwrl_610471366.pdb > /var/tmp/scwrl_610471366.log Error: can't open any of /var/tmp/from_scwrl_610471366.pdb or /var/tmp/from_scwrl_610471366_b.pdb or /var/tmp/from_scwrl_610471366_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1997295802.pdb -s /var/tmp/to_scwrl_1997295802.seq -o /var/tmp/from_scwrl_1997295802.pdb > /var/tmp/scwrl_1997295802.log Error: can't open any of /var/tmp/from_scwrl_1997295802.pdb or /var/tmp/from_scwrl_1997295802_b.pdb or /var/tmp/from_scwrl_1997295802_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1135440180.pdb -s /var/tmp/to_scwrl_1135440180.seq -o /var/tmp/from_scwrl_1135440180.pdb > /var/tmp/scwrl_1135440180.log Error: can't open any of /var/tmp/from_scwrl_1135440180.pdb or /var/tmp/from_scwrl_1135440180_b.pdb or /var/tmp/from_scwrl_1135440180_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1630281168.pdb -s /var/tmp/to_scwrl_1630281168.seq -o /var/tmp/from_scwrl_1630281168.pdb > /var/tmp/scwrl_1630281168.log Error: can't open any of /var/tmp/from_scwrl_1630281168.pdb or /var/tmp/from_scwrl_1630281168_b.pdb or /var/tmp/from_scwrl_1630281168_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2125310896.pdb -s /var/tmp/to_scwrl_2125310896.seq -o /var/tmp/from_scwrl_2125310896.pdb > /var/tmp/scwrl_2125310896.log Error: can't open any of /var/tmp/from_scwrl_2125310896.pdb or /var/tmp/from_scwrl_2125310896_b.pdb or /var/tmp/from_scwrl_2125310896_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2029069392.pdb -s /var/tmp/to_scwrl_2029069392.seq -o /var/tmp/from_scwrl_2029069392.pdb > /var/tmp/scwrl_2029069392.log Error: can't open any of /var/tmp/from_scwrl_2029069392.pdb or /var/tmp/from_scwrl_2029069392_b.pdb or /var/tmp/from_scwrl_2029069392_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1818391353.pdb -s /var/tmp/to_scwrl_1818391353.seq -o /var/tmp/from_scwrl_1818391353.pdb > /var/tmp/scwrl_1818391353.log Error: can't open any of /var/tmp/from_scwrl_1818391353.pdb or /var/tmp/from_scwrl_1818391353_b.pdb or /var/tmp/from_scwrl_1818391353_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1308463747.pdb -s /var/tmp/to_scwrl_1308463747.seq -o /var/tmp/from_scwrl_1308463747.pdb > /var/tmp/scwrl_1308463747.log Error: can't open any of /var/tmp/from_scwrl_1308463747.pdb or /var/tmp/from_scwrl_1308463747_b.pdb or /var/tmp/from_scwrl_1308463747_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1810259769.pdb -s /var/tmp/to_scwrl_1810259769.seq -o /var/tmp/from_scwrl_1810259769.pdb > /var/tmp/scwrl_1810259769.log Error: can't open any of /var/tmp/from_scwrl_1810259769.pdb or /var/tmp/from_scwrl_1810259769_b.pdb or /var/tmp/from_scwrl_1810259769_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_810632962.pdb -s /var/tmp/to_scwrl_810632962.seq -o /var/tmp/from_scwrl_810632962.pdb > /var/tmp/scwrl_810632962.log Error: can't open any of /var/tmp/from_scwrl_810632962.pdb or /var/tmp/from_scwrl_810632962_b.pdb or /var/tmp/from_scwrl_810632962_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1019074937.pdb -s /var/tmp/to_scwrl_1019074937.seq -o /var/tmp/from_scwrl_1019074937.pdb > /var/tmp/scwrl_1019074937.log Error: can't open any of /var/tmp/from_scwrl_1019074937.pdb or /var/tmp/from_scwrl_1019074937_b.pdb or /var/tmp/from_scwrl_1019074937_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_121294035.pdb -s /var/tmp/to_scwrl_121294035.seq -o /var/tmp/from_scwrl_121294035.pdb > /var/tmp/scwrl_121294035.log Error: can't open any of /var/tmp/from_scwrl_121294035.pdb or /var/tmp/from_scwrl_121294035_b.pdb or /var/tmp/from_scwrl_121294035_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_403402603.pdb -s /var/tmp/to_scwrl_403402603.seq -o /var/tmp/from_scwrl_403402603.pdb > /var/tmp/scwrl_403402603.log Error: can't open any of /var/tmp/from_scwrl_403402603.pdb or /var/tmp/from_scwrl_403402603_b.pdb or /var/tmp/from_scwrl_403402603_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1921556674.pdb -s /var/tmp/to_scwrl_1921556674.seq -o /var/tmp/from_scwrl_1921556674.pdb > /var/tmp/scwrl_1921556674.log Error: can't open any of /var/tmp/from_scwrl_1921556674.pdb or /var/tmp/from_scwrl_1921556674_b.pdb or /var/tmp/from_scwrl_1921556674_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1610749959.pdb -s /var/tmp/to_scwrl_1610749959.seq -o /var/tmp/from_scwrl_1610749959.pdb > /var/tmp/scwrl_1610749959.log Error: can't open any of /var/tmp/from_scwrl_1610749959.pdb or /var/tmp/from_scwrl_1610749959_b.pdb or /var/tmp/from_scwrl_1610749959_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_278942185.pdb -s /var/tmp/to_scwrl_278942185.seq -o /var/tmp/from_scwrl_278942185.pdb > /var/tmp/scwrl_278942185.log Error: can't open any of /var/tmp/from_scwrl_278942185.pdb or /var/tmp/from_scwrl_278942185_b.pdb or /var/tmp/from_scwrl_278942185_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1295292236.pdb -s /var/tmp/to_scwrl_1295292236.seq -o /var/tmp/from_scwrl_1295292236.pdb > /var/tmp/scwrl_1295292236.log Error: can't open any of /var/tmp/from_scwrl_1295292236.pdb or /var/tmp/from_scwrl_1295292236_b.pdb or /var/tmp/from_scwrl_1295292236_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1125082992.pdb -s /var/tmp/to_scwrl_1125082992.seq -o /var/tmp/from_scwrl_1125082992.pdb > /var/tmp/scwrl_1125082992.log Error: can't open any of /var/tmp/from_scwrl_1125082992.pdb or /var/tmp/from_scwrl_1125082992_b.pdb or /var/tmp/from_scwrl_1125082992_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1213705023.pdb -s /var/tmp/to_scwrl_1213705023.seq -o /var/tmp/from_scwrl_1213705023.pdb > /var/tmp/scwrl_1213705023.log Error: can't open any of /var/tmp/from_scwrl_1213705023.pdb or /var/tmp/from_scwrl_1213705023_b.pdb or /var/tmp/from_scwrl_1213705023_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_887680910.pdb -s /var/tmp/to_scwrl_887680910.seq -o /var/tmp/from_scwrl_887680910.pdb > /var/tmp/scwrl_887680910.log Error: can't open any of /var/tmp/from_scwrl_887680910.pdb or /var/tmp/from_scwrl_887680910_b.pdb or /var/tmp/from_scwrl_887680910_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1342128143.pdb -s /var/tmp/to_scwrl_1342128143.seq -o /var/tmp/from_scwrl_1342128143.pdb > /var/tmp/scwrl_1342128143.log Error: can't open any of /var/tmp/from_scwrl_1342128143.pdb or /var/tmp/from_scwrl_1342128143_b.pdb or /var/tmp/from_scwrl_1342128143_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2044916521.pdb -s /var/tmp/to_scwrl_2044916521.seq -o /var/tmp/from_scwrl_2044916521.pdb > /var/tmp/scwrl_2044916521.log Error: can't open any of /var/tmp/from_scwrl_2044916521.pdb or /var/tmp/from_scwrl_2044916521_b.pdb or /var/tmp/from_scwrl_2044916521_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_139056364.pdb -s /var/tmp/to_scwrl_139056364.seq -o /var/tmp/from_scwrl_139056364.pdb > /var/tmp/scwrl_139056364.log Error: can't open any of /var/tmp/from_scwrl_139056364.pdb or /var/tmp/from_scwrl_139056364_b.pdb or /var/tmp/from_scwrl_139056364_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_897233830.pdb -s /var/tmp/to_scwrl_897233830.seq -o /var/tmp/from_scwrl_897233830.pdb > /var/tmp/scwrl_897233830.log Error: can't open any of /var/tmp/from_scwrl_897233830.pdb or /var/tmp/from_scwrl_897233830_b.pdb or /var/tmp/from_scwrl_897233830_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_488667704.pdb -s /var/tmp/to_scwrl_488667704.seq -o /var/tmp/from_scwrl_488667704.pdb > /var/tmp/scwrl_488667704.log Error: can't open any of /var/tmp/from_scwrl_488667704.pdb or /var/tmp/from_scwrl_488667704_b.pdb or /var/tmp/from_scwrl_488667704_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1801187147.pdb -s /var/tmp/to_scwrl_1801187147.seq -o /var/tmp/from_scwrl_1801187147.pdb > /var/tmp/scwrl_1801187147.log Error: can't open any of /var/tmp/from_scwrl_1801187147.pdb or /var/tmp/from_scwrl_1801187147_b.pdb or /var/tmp/from_scwrl_1801187147_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_755883104.pdb -s /var/tmp/to_scwrl_755883104.seq -o /var/tmp/from_scwrl_755883104.pdb > /var/tmp/scwrl_755883104.log Error: can't open any of /var/tmp/from_scwrl_755883104.pdb or /var/tmp/from_scwrl_755883104_b.pdb or /var/tmp/from_scwrl_755883104_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1099102427.pdb -s /var/tmp/to_scwrl_1099102427.seq -o /var/tmp/from_scwrl_1099102427.pdb > /var/tmp/scwrl_1099102427.log Error: can't open any of /var/tmp/from_scwrl_1099102427.pdb or /var/tmp/from_scwrl_1099102427_b.pdb or /var/tmp/from_scwrl_1099102427_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_139596976.pdb -s /var/tmp/to_scwrl_139596976.seq -o /var/tmp/from_scwrl_139596976.pdb > /var/tmp/scwrl_139596976.log Error: can't open any of /var/tmp/from_scwrl_139596976.pdb or /var/tmp/from_scwrl_139596976_b.pdb or /var/tmp/from_scwrl_139596976_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1834529451.pdb -s /var/tmp/to_scwrl_1834529451.seq -o /var/tmp/from_scwrl_1834529451.pdb > /var/tmp/scwrl_1834529451.log Error: can't open any of /var/tmp/from_scwrl_1834529451.pdb or /var/tmp/from_scwrl_1834529451_b.pdb or /var/tmp/from_scwrl_1834529451_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1458855786.pdb -s /var/tmp/to_scwrl_1458855786.seq -o /var/tmp/from_scwrl_1458855786.pdb > /var/tmp/scwrl_1458855786.log Error: can't open any of /var/tmp/from_scwrl_1458855786.pdb or /var/tmp/from_scwrl_1458855786_b.pdb or /var/tmp/from_scwrl_1458855786_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_750068342.pdb -s /var/tmp/to_scwrl_750068342.seq -o /var/tmp/from_scwrl_750068342.pdb > /var/tmp/scwrl_750068342.log Error: can't open any of /var/tmp/from_scwrl_750068342.pdb or /var/tmp/from_scwrl_750068342_b.pdb or /var/tmp/from_scwrl_750068342_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1684341607.pdb -s /var/tmp/to_scwrl_1684341607.seq -o /var/tmp/from_scwrl_1684341607.pdb > /var/tmp/scwrl_1684341607.log Error: can't open any of /var/tmp/from_scwrl_1684341607.pdb or /var/tmp/from_scwrl_1684341607_b.pdb or /var/tmp/from_scwrl_1684341607_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_446812320.pdb -s /var/tmp/to_scwrl_446812320.seq -o /var/tmp/from_scwrl_446812320.pdb > /var/tmp/scwrl_446812320.log Error: can't open any of /var/tmp/from_scwrl_446812320.pdb or /var/tmp/from_scwrl_446812320_b.pdb or /var/tmp/from_scwrl_446812320_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_232865863.pdb -s /var/tmp/to_scwrl_232865863.seq -o /var/tmp/from_scwrl_232865863.pdb > /var/tmp/scwrl_232865863.log Error: can't open any of /var/tmp/from_scwrl_232865863.pdb or /var/tmp/from_scwrl_232865863_b.pdb or /var/tmp/from_scwrl_232865863_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1662168856.pdb -s /var/tmp/to_scwrl_1662168856.seq -o /var/tmp/from_scwrl_1662168856.pdb > /var/tmp/scwrl_1662168856.log Error: can't open any of /var/tmp/from_scwrl_1662168856.pdb or /var/tmp/from_scwrl_1662168856_b.pdb or /var/tmp/from_scwrl_1662168856_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_328398066.pdb -s /var/tmp/to_scwrl_328398066.seq -o /var/tmp/from_scwrl_328398066.pdb > /var/tmp/scwrl_328398066.log Error: can't open any of /var/tmp/from_scwrl_328398066.pdb or /var/tmp/from_scwrl_328398066_b.pdb or /var/tmp/from_scwrl_328398066_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2051257217.pdb -s /var/tmp/to_scwrl_2051257217.seq -o /var/tmp/from_scwrl_2051257217.pdb > /var/tmp/scwrl_2051257217.log Error: can't open any of /var/tmp/from_scwrl_2051257217.pdb or /var/tmp/from_scwrl_2051257217_b.pdb or /var/tmp/from_scwrl_2051257217_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_823148957.pdb -s /var/tmp/to_scwrl_823148957.seq -o /var/tmp/from_scwrl_823148957.pdb > /var/tmp/scwrl_823148957.log Error: can't open any of /var/tmp/from_scwrl_823148957.pdb or /var/tmp/from_scwrl_823148957_b.pdb or /var/tmp/from_scwrl_823148957_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2138657835.pdb -s /var/tmp/to_scwrl_2138657835.seq -o /var/tmp/from_scwrl_2138657835.pdb > /var/tmp/scwrl_2138657835.log Error: can't open any of /var/tmp/from_scwrl_2138657835.pdb or /var/tmp/from_scwrl_2138657835_b.pdb or /var/tmp/from_scwrl_2138657835_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_714406532.pdb -s /var/tmp/to_scwrl_714406532.seq -o /var/tmp/from_scwrl_714406532.pdb > /var/tmp/scwrl_714406532.log Error: can't open any of /var/tmp/from_scwrl_714406532.pdb or /var/tmp/from_scwrl_714406532_b.pdb or /var/tmp/from_scwrl_714406532_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1842223893.pdb -s /var/tmp/to_scwrl_1842223893.seq -o /var/tmp/from_scwrl_1842223893.pdb > /var/tmp/scwrl_1842223893.log Error: can't open any of /var/tmp/from_scwrl_1842223893.pdb or /var/tmp/from_scwrl_1842223893_b.pdb or /var/tmp/from_scwrl_1842223893_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_112468224.pdb -s /var/tmp/to_scwrl_112468224.seq -o /var/tmp/from_scwrl_112468224.pdb > /var/tmp/scwrl_112468224.log Error: can't open any of /var/tmp/from_scwrl_112468224.pdb or /var/tmp/from_scwrl_112468224_b.pdb or /var/tmp/from_scwrl_112468224_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1117809134.pdb -s /var/tmp/to_scwrl_1117809134.seq -o /var/tmp/from_scwrl_1117809134.pdb > /var/tmp/scwrl_1117809134.log Error: can't open any of /var/tmp/from_scwrl_1117809134.pdb or /var/tmp/from_scwrl_1117809134_b.pdb or /var/tmp/from_scwrl_1117809134_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1616296920.pdb -s /var/tmp/to_scwrl_1616296920.seq -o /var/tmp/from_scwrl_1616296920.pdb > /var/tmp/scwrl_1616296920.log Error: can't open any of /var/tmp/from_scwrl_1616296920.pdb or /var/tmp/from_scwrl_1616296920_b.pdb or /var/tmp/from_scwrl_1616296920_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1723218183.pdb -s /var/tmp/to_scwrl_1723218183.seq -o /var/tmp/from_scwrl_1723218183.pdb > /var/tmp/scwrl_1723218183.log Error: can't open any of /var/tmp/from_scwrl_1723218183.pdb or /var/tmp/from_scwrl_1723218183_b.pdb or /var/tmp/from_scwrl_1723218183_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1396751320.pdb -s /var/tmp/to_scwrl_1396751320.seq -o /var/tmp/from_scwrl_1396751320.pdb > /var/tmp/scwrl_1396751320.log Error: can't open any of /var/tmp/from_scwrl_1396751320.pdb or /var/tmp/from_scwrl_1396751320_b.pdb or /var/tmp/from_scwrl_1396751320_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_764105511.pdb -s /var/tmp/to_scwrl_764105511.seq -o /var/tmp/from_scwrl_764105511.pdb > /var/tmp/scwrl_764105511.log Error: can't open any of /var/tmp/from_scwrl_764105511.pdb or /var/tmp/from_scwrl_764105511_b.pdb or /var/tmp/from_scwrl_764105511_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_700817529.pdb -s /var/tmp/to_scwrl_700817529.seq -o /var/tmp/from_scwrl_700817529.pdb > /var/tmp/scwrl_700817529.log Error: can't open any of /var/tmp/from_scwrl_700817529.pdb or /var/tmp/from_scwrl_700817529_b.pdb or /var/tmp/from_scwrl_700817529_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_462972697.pdb -s /var/tmp/to_scwrl_462972697.seq -o /var/tmp/from_scwrl_462972697.pdb > /var/tmp/scwrl_462972697.log Error: can't open any of /var/tmp/from_scwrl_462972697.pdb or /var/tmp/from_scwrl_462972697_b.pdb or /var/tmp/from_scwrl_462972697_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1651786420.pdb -s /var/tmp/to_scwrl_1651786420.seq -o /var/tmp/from_scwrl_1651786420.pdb > /var/tmp/scwrl_1651786420.log Error: can't open any of /var/tmp/from_scwrl_1651786420.pdb or /var/tmp/from_scwrl_1651786420_b.pdb or /var/tmp/from_scwrl_1651786420_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2042945673.pdb -s /var/tmp/to_scwrl_2042945673.seq -o /var/tmp/from_scwrl_2042945673.pdb > /var/tmp/scwrl_2042945673.log Error: can't open any of /var/tmp/from_scwrl_2042945673.pdb or /var/tmp/from_scwrl_2042945673_b.pdb or /var/tmp/from_scwrl_2042945673_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_360405572.pdb -s /var/tmp/to_scwrl_360405572.seq -o /var/tmp/from_scwrl_360405572.pdb > /var/tmp/scwrl_360405572.log Error: can't open any of /var/tmp/from_scwrl_360405572.pdb or /var/tmp/from_scwrl_360405572_b.pdb or /var/tmp/from_scwrl_360405572_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1790842784.pdb -s /var/tmp/to_scwrl_1790842784.seq -o /var/tmp/from_scwrl_1790842784.pdb > /var/tmp/scwrl_1790842784.log Error: can't open any of /var/tmp/from_scwrl_1790842784.pdb or /var/tmp/from_scwrl_1790842784_b.pdb or /var/tmp/from_scwrl_1790842784_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_792695856.pdb -s /var/tmp/to_scwrl_792695856.seq -o /var/tmp/from_scwrl_792695856.pdb > /var/tmp/scwrl_792695856.log Error: can't open any of /var/tmp/from_scwrl_792695856.pdb or /var/tmp/from_scwrl_792695856_b.pdb or /var/tmp/from_scwrl_792695856_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_849073276.pdb -s /var/tmp/to_scwrl_849073276.seq -o /var/tmp/from_scwrl_849073276.pdb > /var/tmp/scwrl_849073276.log Error: can't open any of /var/tmp/from_scwrl_849073276.pdb or /var/tmp/from_scwrl_849073276_b.pdb or /var/tmp/from_scwrl_849073276_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1444546284.pdb -s /var/tmp/to_scwrl_1444546284.seq -o /var/tmp/from_scwrl_1444546284.pdb > /var/tmp/scwrl_1444546284.log Error: can't open any of /var/tmp/from_scwrl_1444546284.pdb or /var/tmp/from_scwrl_1444546284_b.pdb or /var/tmp/from_scwrl_1444546284_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1548578959.pdb -s /var/tmp/to_scwrl_1548578959.seq -o /var/tmp/from_scwrl_1548578959.pdb > /var/tmp/scwrl_1548578959.log Error: can't open any of /var/tmp/from_scwrl_1548578959.pdb or /var/tmp/from_scwrl_1548578959_b.pdb or /var/tmp/from_scwrl_1548578959_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1948175703.pdb -s /var/tmp/to_scwrl_1948175703.seq -o /var/tmp/from_scwrl_1948175703.pdb > /var/tmp/scwrl_1948175703.log Error: can't open any of /var/tmp/from_scwrl_1948175703.pdb or /var/tmp/from_scwrl_1948175703_b.pdb or /var/tmp/from_scwrl_1948175703_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1584143260.pdb -s /var/tmp/to_scwrl_1584143260.seq -o /var/tmp/from_scwrl_1584143260.pdb > /var/tmp/scwrl_1584143260.log Error: can't open any of /var/tmp/from_scwrl_1584143260.pdb or /var/tmp/from_scwrl_1584143260_b.pdb or /var/tmp/from_scwrl_1584143260_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1235624764.pdb -s /var/tmp/to_scwrl_1235624764.seq -o /var/tmp/from_scwrl_1235624764.pdb > /var/tmp/scwrl_1235624764.log Error: can't open any of /var/tmp/from_scwrl_1235624764.pdb or /var/tmp/from_scwrl_1235624764_b.pdb or /var/tmp/from_scwrl_1235624764_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1259547842.pdb -s /var/tmp/to_scwrl_1259547842.seq -o /var/tmp/from_scwrl_1259547842.pdb > /var/tmp/scwrl_1259547842.log Error: can't open any of /var/tmp/from_scwrl_1259547842.pdb or /var/tmp/from_scwrl_1259547842_b.pdb or /var/tmp/from_scwrl_1259547842_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_186727956.pdb -s /var/tmp/to_scwrl_186727956.seq -o /var/tmp/from_scwrl_186727956.pdb > /var/tmp/scwrl_186727956.log Error: can't open any of /var/tmp/from_scwrl_186727956.pdb or /var/tmp/from_scwrl_186727956_b.pdb or /var/tmp/from_scwrl_186727956_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_772482725.pdb -s /var/tmp/to_scwrl_772482725.seq -o /var/tmp/from_scwrl_772482725.pdb > /var/tmp/scwrl_772482725.log Error: can't open any of /var/tmp/from_scwrl_772482725.pdb or /var/tmp/from_scwrl_772482725_b.pdb or /var/tmp/from_scwrl_772482725_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1706360163.pdb -s /var/tmp/to_scwrl_1706360163.seq -o /var/tmp/from_scwrl_1706360163.pdb > /var/tmp/scwrl_1706360163.log Error: can't open any of /var/tmp/from_scwrl_1706360163.pdb or /var/tmp/from_scwrl_1706360163_b.pdb or /var/tmp/from_scwrl_1706360163_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_419593819.pdb -s /var/tmp/to_scwrl_419593819.seq -o /var/tmp/from_scwrl_419593819.pdb > /var/tmp/scwrl_419593819.log Error: can't open any of /var/tmp/from_scwrl_419593819.pdb or /var/tmp/from_scwrl_419593819_b.pdb or /var/tmp/from_scwrl_419593819_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_287167934.pdb -s /var/tmp/to_scwrl_287167934.seq -o /var/tmp/from_scwrl_287167934.pdb > /var/tmp/scwrl_287167934.log Error: can't open any of /var/tmp/from_scwrl_287167934.pdb or /var/tmp/from_scwrl_287167934_b.pdb or /var/tmp/from_scwrl_287167934_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2034758229.pdb -s /var/tmp/to_scwrl_2034758229.seq -o /var/tmp/from_scwrl_2034758229.pdb > /var/tmp/scwrl_2034758229.log Error: can't open any of /var/tmp/from_scwrl_2034758229.pdb or /var/tmp/from_scwrl_2034758229_b.pdb or /var/tmp/from_scwrl_2034758229_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_323367389.pdb -s /var/tmp/to_scwrl_323367389.seq -o /var/tmp/from_scwrl_323367389.pdb > /var/tmp/scwrl_323367389.log Error: can't open any of /var/tmp/from_scwrl_323367389.pdb or /var/tmp/from_scwrl_323367389_b.pdb or /var/tmp/from_scwrl_323367389_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1110316891.pdb -s /var/tmp/to_scwrl_1110316891.seq -o /var/tmp/from_scwrl_1110316891.pdb > /var/tmp/scwrl_1110316891.log Error: can't open any of /var/tmp/from_scwrl_1110316891.pdb or /var/tmp/from_scwrl_1110316891_b.pdb or /var/tmp/from_scwrl_1110316891_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2025932417.pdb -s /var/tmp/to_scwrl_2025932417.seq -o /var/tmp/from_scwrl_2025932417.pdb > /var/tmp/scwrl_2025932417.log Error: can't open any of /var/tmp/from_scwrl_2025932417.pdb or /var/tmp/from_scwrl_2025932417_b.pdb or /var/tmp/from_scwrl_2025932417_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1037773922.pdb -s /var/tmp/to_scwrl_1037773922.seq -o /var/tmp/from_scwrl_1037773922.pdb > /var/tmp/scwrl_1037773922.log Error: can't open any of /var/tmp/from_scwrl_1037773922.pdb or /var/tmp/from_scwrl_1037773922_b.pdb or /var/tmp/from_scwrl_1037773922_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_805057138.pdb -s /var/tmp/to_scwrl_805057138.seq -o /var/tmp/from_scwrl_805057138.pdb > /var/tmp/scwrl_805057138.log Error: can't open any of /var/tmp/from_scwrl_805057138.pdb or /var/tmp/from_scwrl_805057138_b.pdb or /var/tmp/from_scwrl_805057138_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_2138400641.pdb -s /var/tmp/to_scwrl_2138400641.seq -o /var/tmp/from_scwrl_2138400641.pdb > /var/tmp/scwrl_2138400641.log Error: can't open any of /var/tmp/from_scwrl_2138400641.pdb or /var/tmp/from_scwrl_2138400641_b.pdb or /var/tmp/from_scwrl_2138400641_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_8099409.pdb -s /var/tmp/to_scwrl_8099409.seq -o /var/tmp/from_scwrl_8099409.pdb > /var/tmp/scwrl_8099409.log Error: can't open any of /var/tmp/from_scwrl_8099409.pdb or /var/tmp/from_scwrl_8099409_b.pdb or /var/tmp/from_scwrl_8099409_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_273870412.pdb -s /var/tmp/to_scwrl_273870412.seq -o /var/tmp/from_scwrl_273870412.pdb > /var/tmp/scwrl_273870412.log Error: can't open any of /var/tmp/from_scwrl_273870412.pdb or /var/tmp/from_scwrl_273870412_b.pdb or /var/tmp/from_scwrl_273870412_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1714135178.pdb -s /var/tmp/to_scwrl_1714135178.seq -o /var/tmp/from_scwrl_1714135178.pdb > /var/tmp/scwrl_1714135178.log Error: can't open any of /var/tmp/from_scwrl_1714135178.pdb or /var/tmp/from_scwrl_1714135178_b.pdb or /var/tmp/from_scwrl_1714135178_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1404850729.pdb -s /var/tmp/to_scwrl_1404850729.seq -o /var/tmp/from_scwrl_1404850729.pdb > /var/tmp/scwrl_1404850729.log Error: can't open any of /var/tmp/from_scwrl_1404850729.pdb or /var/tmp/from_scwrl_1404850729_b.pdb or /var/tmp/from_scwrl_1404850729_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1037975923.pdb -s /var/tmp/to_scwrl_1037975923.seq -o /var/tmp/from_scwrl_1037975923.pdb > /var/tmp/scwrl_1037975923.log Error: can't open any of /var/tmp/from_scwrl_1037975923.pdb or /var/tmp/from_scwrl_1037975923_b.pdb or /var/tmp/from_scwrl_1037975923_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_267469060.pdb -s /var/tmp/to_scwrl_267469060.seq -o /var/tmp/from_scwrl_267469060.pdb > /var/tmp/scwrl_267469060.log Error: can't open any of /var/tmp/from_scwrl_267469060.pdb or /var/tmp/from_scwrl_267469060_b.pdb or /var/tmp/from_scwrl_267469060_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_1867823427.pdb -s /var/tmp/to_scwrl_1867823427.seq -o /var/tmp/from_scwrl_1867823427.pdb > /var/tmp/scwrl_1867823427.log Error: can't open any of /var/tmp/from_scwrl_1867823427.pdb or /var/tmp/from_scwrl_1867823427_b.pdb or /var/tmp/from_scwrl_1867823427_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_542278696.pdb -s /var/tmp/to_scwrl_542278696.seq -o /var/tmp/from_scwrl_542278696.pdb > /var/tmp/scwrl_542278696.log Error: can't open any of /var/tmp/from_scwrl_542278696.pdb or /var/tmp/from_scwrl_542278696_b.pdb or /var/tmp/from_scwrl_542278696_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_162931086.pdb -s /var/tmp/to_scwrl_162931086.seq -o /var/tmp/from_scwrl_162931086.pdb > /var/tmp/scwrl_162931086.log Error: can't open any of /var/tmp/from_scwrl_162931086.pdb or /var/tmp/from_scwrl_162931086_b.pdb or /var/tmp/from_scwrl_162931086_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_80745352.pdb -s /var/tmp/to_scwrl_80745352.seq -o /var/tmp/from_scwrl_80745352.pdb > /var/tmp/scwrl_80745352.log Error: can't open any of /var/tmp/from_scwrl_80745352.pdb or /var/tmp/from_scwrl_80745352_b.pdb or /var/tmp/from_scwrl_80745352_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_185637833.pdb -s /var/tmp/to_scwrl_185637833.seq -o /var/tmp/from_scwrl_185637833.pdb > /var/tmp/scwrl_185637833.log Error: can't open any of /var/tmp/from_scwrl_185637833.pdb or /var/tmp/from_scwrl_185637833_b.pdb or /var/tmp/from_scwrl_185637833_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_955626942.pdb -s /var/tmp/to_scwrl_955626942.seq -o /var/tmp/from_scwrl_955626942.pdb > /var/tmp/scwrl_955626942.log Error: can't open any of /var/tmp/from_scwrl_955626942.pdb or /var/tmp/from_scwrl_955626942_b.pdb or /var/tmp/from_scwrl_955626942_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 185 ; scwrl -i /var/tmp/to_scwrl_929818628.pdb -s /var/tmp/to_scwrl_929818628.seq -o /var/tmp/from_scwrl_929818628.pdb > /var/tmp/scwrl_929818628.log Error: can't open any of /var/tmp/from_scwrl_929818628.pdb or /var/tmp/from_scwrl_929818628_b.pdb or /var/tmp/from_scwrl_929818628_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 45.88 sec, elapsed time= 54.3772 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 374.676 real_cost = 383.28 nFOLD_TS5-scwrl costs 11915.7 real_cost = 536.69 nFOLD_TS4-scwrl costs 12337.3 real_cost = 539.99 nFOLD_TS3-scwrl costs 10837.3 real_cost = 541.669 nFOLD_TS2-scwrl costs 6284.06 real_cost = 535.849 nFOLD_TS1-scwrl costs 5742.01 real_cost = 538.77 mGen-3D_TS1-scwrl costs 5699.49 real_cost = 539.931 keasar-server_TS5-scwrl costs 328.704 real_cost = 384.888 keasar-server_TS4-scwrl costs 356.234 real_cost = 378.812 keasar-server_TS3-scwrl costs 333.405 real_cost = 399.203 keasar-server_TS2-scwrl costs 316.263 real_cost = 381.026 keasar-server_TS1-scwrl costs 344.859 real_cost = 382.026 karypis.srv_TS5-scwrl costs 365.51 real_cost = 407.147 karypis.srv_TS4-scwrl costs 388.698 real_cost = 425.198 karypis.srv_TS3-scwrl costs 336.639 real_cost = 394.197 karypis.srv_TS2-scwrl costs 329.089 real_cost = 404.265 karypis.srv_TS1-scwrl costs 345.768 real_cost = 389.033 karypis.srv.4_TS1-scwrl costs 479.839 real_cost = 402.685 karypis.srv.2_TS5-scwrl costs 342.442 real_cost = 381.916 karypis.srv.2_TS4-scwrl costs 306.114 real_cost = 387.245 karypis.srv.2_TS3-scwrl costs 293.297 real_cost = 399.731 karypis.srv.2_TS2-scwrl costs 290.95 real_cost = 386.478 karypis.srv.2_TS1-scwrl costs 324.353 real_cost = 405.77 gtg_AL5-scwrl costs 17975.4 real_cost = 685.038 gtg_AL4-scwrl costs 21435.4 real_cost = 639.094 gtg_AL3-scwrl costs 36437.2 real_cost = 645.032 gtg_AL2-scwrl costs 12372.6 real_cost = 660.196 gtg_AL1-scwrl costs 15869.5 real_cost = 648.412 forecast-s_AL5-scwrl costs 28175 real_cost = 565.993 forecast-s_AL4-scwrl costs 52904.2 real_cost = 576.611 forecast-s_AL3-scwrl costs 27424.6 real_cost = 558.867 forecast-s_AL2-scwrl costs 40564.1 real_cost = 561.581 forecast-s_AL1-scwrl costs 24338.8 real_cost = 566.82 beautshotbase_TS1-scwrl costs 405.125 real_cost = 393.122 beautshot_TS1-scwrl costs 375.88 real_cost = 372.907 Zhang-Server_TS5-scwrl costs 297.605 real_cost = 387.492 Zhang-Server_TS4-scwrl costs 314.407 real_cost = 381.445 Zhang-Server_TS3-scwrl costs 307.997 real_cost = 388.674 Zhang-Server_TS2-scwrl costs 289.435 real_cost = 384.51 Zhang-Server_TS1-scwrl costs 300.767 real_cost = 382.019 UNI-EID_sfst_AL5-scwrl costs 221868 real_cost = 568.929 UNI-EID_sfst_AL4-scwrl costs 24639.8 real_cost = 566.677 UNI-EID_sfst_AL3-scwrl costs 28379 real_cost = 577.376 UNI-EID_sfst_AL2-scwrl costs 20103.6 real_cost = 563.486 UNI-EID_sfst_AL1-scwrl costs 35236 real_cost = 566.694 UNI-EID_expm_TS1-scwrl costs 11572.5 real_cost = 500.495 UNI-EID_bnmx_TS5-scwrl costs 246924 real_cost = 568.286 UNI-EID_bnmx_TS4-scwrl costs 24639.8 real_cost = 566.677 UNI-EID_bnmx_TS3-scwrl costs 28394.4 real_cost = 579.012 UNI-EID_bnmx_TS2-scwrl costs 26700 real_cost = 568.579 UNI-EID_bnmx_TS1-scwrl costs 35236.4 real_cost = 566.724 SPARKS2_TS5-scwrl costs 317.88 real_cost = 404.27 SPARKS2_TS4-scwrl costs 315.453 real_cost = 383.192 SPARKS2_TS3-scwrl costs 321.767 real_cost = 378.49 SPARKS2_TS2-scwrl costs 294.315 real_cost = 397.533 SPARKS2_TS1-scwrl costs 311.238 real_cost = 389.64 SP4_TS5-scwrl costs 309.552 real_cost = 402.535 SP4_TS4-scwrl costs 320.701 real_cost = 385.03 SP4_TS3-scwrl costs 316.372 real_cost = 392.041 SP4_TS2-scwrl costs 304.115 real_cost = 389.417 SP4_TS1-scwrl costs 324.107 real_cost = 393.777 SP3_TS5-scwrl costs 317.763 real_cost = 401.094 SP3_TS4-scwrl costs 306.028 real_cost = 395.377 SP3_TS3-scwrl costs 328.369 real_cost = 403.079 SP3_TS2-scwrl costs 292.385 real_cost = 401.172 SP3_TS1-scwrl costs 303.534 real_cost = 403.988 SAM_T06_server_TS5-scwrl costs 702.207 real_cost = 471.949 SAM_T06_server_TS4-scwrl costs 761.928 real_cost = 490.38 SAM_T06_server_TS3-scwrl costs 573.002 real_cost = 463.673 SAM_T06_server_TS2-scwrl costs 516.266 real_cost = 433.112 SAM_T06_server_TS1-scwrl costs 260.054 real_cost = 379.427 SAM-T99_AL5-scwrl costs 26018.1 real_cost = 562.539 SAM-T99_AL4-scwrl costs 40396.6 real_cost = 574.061 SAM-T99_AL3-scwrl costs 40115.8 real_cost = 570.493 SAM-T99_AL2-scwrl costs 39971.2 real_cost = 571.167 SAM-T99_AL1-scwrl costs 39306.7 real_cost = 565.772 SAM-T02_AL5-scwrl costs 39793.1 real_cost = 587.905 SAM-T02_AL4-scwrl costs 39014.4 real_cost = 585.885 SAM-T02_AL3-scwrl costs 30590.6 real_cost = 594.87 SAM-T02_AL2-scwrl costs 17927.5 real_cost = 588.651 SAM-T02_AL1-scwrl costs 39042.8 real_cost = 593.247 ROKKY_TS5-scwrl costs 298.844 real_cost = 381.956 ROKKY_TS4-scwrl costs 292.258 real_cost = 400.635 ROKKY_TS3-scwrl costs 303.718 real_cost = 383.823 ROKKY_TS2-scwrl costs 298.156 real_cost = 389.847 ROKKY_TS1-scwrl costs 301.258 real_cost = 377.421 ROBETTA_TS5-scwrl costs 270.415 real_cost = 397.262 ROBETTA_TS4-scwrl costs 266.154 real_cost = 370.79 ROBETTA_TS3-scwrl costs 266.231 real_cost = 392.245 ROBETTA_TS2-scwrl costs 252.569 real_cost = 372.927 ROBETTA_TS1-scwrl costs 260.163 real_cost = 370.313 RAPTOR_TS5-scwrl costs 315.876 real_cost = 399.68 RAPTOR_TS4-scwrl costs 324.111 real_cost = 408.335 RAPTOR_TS3-scwrl costs 298.053 real_cost = 399.297 RAPTOR_TS2-scwrl costs 315.022 real_cost = 403.713 RAPTOR_TS1-scwrl costs 325.831 real_cost = 388.365 RAPTORESS_TS5-scwrl costs 297.109 real_cost = 402.733 RAPTORESS_TS4-scwrl costs 291.061 real_cost = 406.205 RAPTORESS_TS3-scwrl costs 304.716 real_cost = 396.274 RAPTORESS_TS2-scwrl costs 291.078 real_cost = 405.531 RAPTORESS_TS1-scwrl costs 298.595 real_cost = 405.631 RAPTOR-ACE_TS5-scwrl costs 303.534 real_cost = 403.988 RAPTOR-ACE_TS4-scwrl costs 302.811 real_cost = 400.756 RAPTOR-ACE_TS3-scwrl costs 325.134 real_cost = 407.893 RAPTOR-ACE_TS2-scwrl costs 306.028 real_cost = 395.377 RAPTOR-ACE_TS1-scwrl costs 313.646 real_cost = 398.314 Pmodeller6_TS5-scwrl costs 330.061 real_cost = 383.503 Pmodeller6_TS4-scwrl costs 327.936 real_cost = 395.289 Pmodeller6_TS3-scwrl costs 308.389 real_cost = 402.075 Pmodeller6_TS2-scwrl costs 252.569 real_cost = 372.927 Pmodeller6_TS1-scwrl costs 266.231 real_cost = 392.245 Phyre-2_TS5-scwrl costs 450.225 real_cost = 426.064 Phyre-2_TS4-scwrl costs 450.857 real_cost = 425.838 Phyre-2_TS3-scwrl costs 450.857 real_cost = 425.838 Phyre-2_TS2-scwrl costs 450.857 real_cost = 425.838 Phyre-2_TS1-scwrl costs 450.857 real_cost = 425.838 Phyre-1_TS1-scwrl costs 501.935 real_cost = 434.658 Pcons6_TS5-scwrl costs 460.547 real_cost = 391.022 Pcons6_TS4-scwrl costs 260.163 real_cost = 370.313 Pcons6_TS3-scwrl costs 425.113 real_cost = 383.478 Pcons6_TS2-scwrl costs 371.344 real_cost = 389.1 Pcons6_TS1-scwrl costs 356.59 real_cost = 385.812 PROTINFO_TS5-scwrl costs 290.364 real_cost = 385.804 PROTINFO_TS4-scwrl costs 303.409 real_cost = 389.386 PROTINFO_TS3-scwrl costs 307.094 real_cost = 389.585 PROTINFO_TS2-scwrl costs 275.848 real_cost = 397.286 PROTINFO_TS1-scwrl costs 290.023 real_cost = 379.744 PROTINFO-AB_TS5-scwrl costs 279.124 real_cost = 384.473 PROTINFO-AB_TS4-scwrl costs 281.481 real_cost = 381.365 PROTINFO-AB_TS3-scwrl costs 274.634 real_cost = 389.828 PROTINFO-AB_TS2-scwrl costs 281.12 real_cost = 380.067 PROTINFO-AB_TS1-scwrl costs 280.181 real_cost = 380.864 POMYSL_TS5-scwrl costs 419.252 real_cost = 418.849 POMYSL_TS4-scwrl costs 404.849 real_cost = 422.477 POMYSL_TS3-scwrl costs 509.828 real_cost = 413.206 POMYSL_TS2-scwrl costs 432.704 real_cost = 426.244 POMYSL_TS1-scwrl costs 420.457 real_cost = 409.853 NN_PUT_lab_TS1-scwrl costs 303.534 real_cost = 403.988 MetaTasser_TS5-scwrl costs 533.479 real_cost = 388.203 MetaTasser_TS4-scwrl costs 499.384 real_cost = 383.923 MetaTasser_TS3-scwrl costs 489.821 real_cost = 378.294 MetaTasser_TS2-scwrl costs 497.254 real_cost = 381.105 MetaTasser_TS1-scwrl costs 483.173 real_cost = 391.286 Ma-OPUS-server_TS5-scwrl costs 326.035 real_cost = 401.89 Ma-OPUS-server_TS4-scwrl costs 327.365 real_cost = 378.35 Ma-OPUS-server_TS3-scwrl costs 334.126 real_cost = 388.004 Ma-OPUS-server_TS2-scwrl costs 293.771 real_cost = 380.034 Ma-OPUS-server_TS1-scwrl costs 294.656 real_cost = 375.016 MIG_FROST_FLEX_AL1-scwrl costs 361.559 real_cost = 387.141 LOOPP_TS4-scwrl costs 374.797 real_cost = 395.303 LOOPP_TS3-scwrl costs 438.497 real_cost = 394.144 LOOPP_TS2-scwrl costs 310.05 real_cost = 390.464 LOOPP_TS1-scwrl costs 403.372 real_cost = 401.368 Huber-Torda-Server_TS5-scwrl costs 14584.8 real_cost = 571.339 Huber-Torda-Server_TS4-scwrl costs 11706.2 real_cost = 562.643 Huber-Torda-Server_TS3-scwrl costs 8658.54 real_cost = 585.09 Huber-Torda-Server_TS2-scwrl costs 5223.41 real_cost = 532.341 Huber-Torda-Server_TS1-scwrl costs 9588.62 real_cost = 597.024 HHpred3_TS1-scwrl costs 300.955 real_cost = 387.266 HHpred2_TS1-scwrl costs 300.739 real_cost = 387.971 HHpred1_TS1-scwrl costs 322.184 real_cost = 392.955 GeneSilicoMetaServer_TS5-scwrl costs 322.876 real_cost = 391.842 GeneSilicoMetaServer_TS3-scwrl costs 297.102 real_cost = 405.669 GeneSilicoMetaServer_TS2-scwrl costs 319.414 real_cost = 398.049 GeneSilicoMetaServer_TS1-scwrl costs 320.601 real_cost = 393.111 FUNCTION_TS5-scwrl costs 323.647 real_cost = 382.436 FUNCTION_TS4-scwrl costs 328.224 real_cost = 381.761 FUNCTION_TS3-scwrl costs 343.057 real_cost = 379.849 FUNCTION_TS2-scwrl costs 320.888 real_cost = 391.793 FUNCTION_TS1-scwrl costs 330.448 real_cost = 381.481 FUGUE_AL5-scwrl costs 35591 real_cost = 573.561 FUGUE_AL4-scwrl costs 31723.3 real_cost = 538.087 FUGUE_AL3-scwrl costs 26512.4 real_cost = 573.548 FUGUE_AL2-scwrl costs 27439.8 real_cost = 561.612 FUGUE_AL1-scwrl costs 39162.4 real_cost = 562.497 FUGMOD_TS5-scwrl costs 343.938 real_cost = 397.669 FUGMOD_TS4-scwrl costs 384.918 real_cost = 374.772 FUGMOD_TS3-scwrl costs 337.216 real_cost = 400.427 FUGMOD_TS2-scwrl costs 329.626 real_cost = 395.793 FUGMOD_TS1-scwrl costs 371.712 real_cost = 409.086 FPSOLVER-SERVER_TS1-scwrl costs 338.409 real_cost = 384.24 FORTE2_AL5-scwrl costs 76833.2 real_cost = 585.524 FORTE2_AL4-scwrl costs 30801.8 real_cost = 550.855 FORTE2_AL3-scwrl costs 52082.6 real_cost = 588.486 FORTE2_AL2-scwrl costs 26351.6 real_cost = 592.819 FORTE2_AL1-scwrl costs 20660.2 real_cost = 568.605 FORTE1_AL5-scwrl costs 52087.6 real_cost = 588.336 FORTE1_AL4-scwrl costs 37934.7 real_cost = 563.143 FORTE1_AL3-scwrl costs 26351.6 real_cost = 592.819 FORTE1_AL2-scwrl costs 26452.3 real_cost = 564.851 FORTE1_AL1-scwrl costs 39425.2 real_cost = 567.866 FOLDpro_TS5-scwrl costs 311.356 real_cost = 405.14 FOLDpro_TS4-scwrl costs 327.657 real_cost = 408.459 FOLDpro_TS3-scwrl costs 334.521 real_cost = 384.026 FOLDpro_TS2-scwrl costs 306.741 real_cost = 370.257 FOLDpro_TS1-scwrl costs 314.535 real_cost = 386.078 FAMS_TS5-scwrl costs 323.647 real_cost = 382.436 FAMS_TS4-scwrl costs 328.224 real_cost = 381.761 FAMS_TS3-scwrl costs 343.057 real_cost = 379.849 FAMS_TS2-scwrl costs 320.888 real_cost = 391.793 FAMS_TS1-scwrl costs 330.448 real_cost = 381.481 FAMSD_TS5-scwrl costs 372.993 real_cost = 388.496 FAMSD_TS4-scwrl costs 365.338 real_cost = 377.624 FAMSD_TS3-scwrl costs 365.939 real_cost = 394.479 FAMSD_TS2-scwrl costs 364.514 real_cost = 415.687 FAMSD_TS1-scwrl costs 347.225 real_cost = 403.66 Distill_TS5-scwrl costs 2648.19 real_cost = 580.81 Distill_TS4-scwrl costs 2645.91 real_cost = 577.039 Distill_TS3-scwrl costs 2650.08 real_cost = 578.371 Distill_TS2-scwrl costs 2649.03 real_cost = 580.713 Distill_TS1-scwrl costs 2649.33 real_cost = 580.181 CaspIta-FOX_TS5-scwrl costs 463.416 real_cost = 413.416 CaspIta-FOX_TS4-scwrl costs 516.498 real_cost = 398.932 CaspIta-FOX_TS3-scwrl costs 521.806 real_cost = 426.74 CaspIta-FOX_TS2-scwrl costs 453.529 real_cost = 411.001 CaspIta-FOX_TS1-scwrl costs 407.659 real_cost = 416.741 CIRCLE_TS5-scwrl costs 339.779 real_cost = 400.914 CIRCLE_TS4-scwrl costs 367.214 real_cost = 379.141 CIRCLE_TS3-scwrl costs 310.941 real_cost = 408.277 CIRCLE_TS2-scwrl costs 371.374 real_cost = 396.288 CIRCLE_TS1-scwrl costs 319.866 real_cost = 389.772 Bilab-ENABLE_TS5-scwrl costs 307.71 real_cost = 381.765 Bilab-ENABLE_TS4-scwrl costs 371.538 real_cost = 394.638 Bilab-ENABLE_TS3-scwrl costs 324.966 real_cost = 389.733 Bilab-ENABLE_TS2-scwrl costs 319.322 real_cost = 402.728 Bilab-ENABLE_TS1-scwrl costs 301.054 real_cost = 391.354 BayesHH_TS1-scwrl costs 387.375 real_cost = 396.856 ABIpro_TS5-scwrl costs 372.092 real_cost = 380.286 ABIpro_TS4-scwrl costs 366.16 real_cost = 375.264 ABIpro_TS3-scwrl costs 359.241 real_cost = 375.216 ABIpro_TS2-scwrl costs 421.784 real_cost = 365.454 ABIpro_TS1-scwrl costs 364.413 real_cost = 401.864 3Dpro_TS5-scwrl costs 348.946 real_cost = 388.74 3Dpro_TS4-scwrl costs 312.34 real_cost = 397.74 3Dpro_TS3-scwrl costs 326.915 real_cost = 387.082 3Dpro_TS2-scwrl costs 328.276 real_cost = 382.655 3Dpro_TS1-scwrl costs 334.966 real_cost = 378.507 3D-JIGSAW_TS5-scwrl costs 939.832 real_cost = 479.61 3D-JIGSAW_TS4-scwrl costs 381.057 real_cost = 395.583 3D-JIGSAW_TS3-scwrl costs 531.56 real_cost = 409.064 3D-JIGSAW_TS2-scwrl costs 530.002 real_cost = 424.164 3D-JIGSAW_TS1-scwrl costs 409.859 real_cost = 385.597 3D-JIGSAW_RECOM_TS5-scwrl costs 531.579 real_cost = 424.15 3D-JIGSAW_RECOM_TS4-scwrl costs 532.253 real_cost = 424.164 3D-JIGSAW_RECOM_TS3-scwrl costs 372.008 real_cost = 384.147 3D-JIGSAW_RECOM_TS2-scwrl costs 370.741 real_cost = 382.274 3D-JIGSAW_RECOM_TS1-scwrl costs 374.661 real_cost = 386.98 3D-JIGSAW_POPULUS_TS5-scwrl costs 343.887 real_cost = 388.131 3D-JIGSAW_POPULUS_TS4-scwrl costs 355.425 real_cost = 388.47 3D-JIGSAW_POPULUS_TS3-scwrl costs 342.902 real_cost = 386.417 3D-JIGSAW_POPULUS_TS2-scwrl costs 349.172 real_cost = 389.866 3D-JIGSAW_POPULUS_TS1-scwrl costs 345.914 real_cost = 378.707 chimera-15-17.pdb.gz costs 348.211 real_cost = 375.535 chimera-15-10.pdb.gz costs 246.21 real_cost = 377.863 T0286.try9-opt2.repack-nonPC.pdb.gz costs 249.242 real_cost = 371.643 T0286.try9-opt2.pdb.gz costs 246.006 real_cost = 366.807 T0286.try9-opt2.gromacs0.pdb.gz costs 259.501 real_cost = 367.22 T0286.try9-opt1.pdb.gz costs 248.447 real_cost = 372.39 T0286.try9-opt1-scwrl.pdb.gz costs 258.256 real_cost = 368.734 T0286.try8-opt2.repack-nonPC.pdb.gz costs 253.987 real_cost = 377.285 T0286.try8-opt2.pdb.gz costs 252.278 real_cost = 373.495 T0286.try8-opt2.gromacs0.pdb.gz costs 266.5 real_cost = 373.058 T0286.try8-opt1.pdb.gz costs 254.582 real_cost = 372.122 T0286.try8-opt1-scwrl.pdb.gz costs 262.268 real_cost = 368.388 T0286.try7-opt2.repack-nonPC.pdb.gz costs 257.509 real_cost = 373.818 T0286.try7-opt2.pdb.gz costs 256.944 real_cost = 373.009 T0286.try7-opt2.gromacs0.pdb.gz costs 268.747 real_cost = 373.158 T0286.try7-opt1.pdb.gz costs 270.375 real_cost = 378.195 T0286.try7-opt1-scwrl.pdb.gz costs 275.343 real_cost = 379.544 T0286.try6-opt2.repack-nonPC.pdb.gz costs 250.209 real_cost = 368.038 T0286.try6-opt2.pdb.gz costs 247.717 real_cost = 370.253 T0286.try6-opt2.gromacs0.pdb.gz costs 264.329 real_cost = 368.986 T0286.try6-opt1.pdb.gz costs 256.634 real_cost = 372.85 T0286.try6-opt1-scwrl.pdb.gz costs 257.379 real_cost = 372.879 T0286.try5-opt2.repack-nonPC.pdb.gz costs 257.155 real_cost = 373.979 T0286.try5-opt2.pdb.gz costs 255.573 real_cost = 376.276 T0286.try5-opt2.gromacs0.pdb.gz costs 265.084 real_cost = 376.922 T0286.try5-opt1.pdb.gz costs 266.819 real_cost = 378.014 T0286.try5-opt1-scwrl.pdb.gz costs 269.426 real_cost = 378.134 T0286.try4-opt2.repack-nonPC.pdb.gz costs 283.736 real_cost = 388.347 T0286.try4-opt2.pdb.gz costs 279.236 real_cost = 383.909 T0286.try4-opt2.gromacs0.pdb.gz costs 293.995 real_cost = 378.077 T0286.try4-opt1.pdb.gz costs 282.419 real_cost = 387.59 T0286.try4-opt1-scwrl.pdb.gz costs 288.37 real_cost = 384.98 T0286.try3-opt2.repack-nonPC.pdb.gz costs 265.425 real_cost = 389.929 T0286.try3-opt2.pdb.gz costs 262.985 real_cost = 389.436 T0286.try3-opt2.gromacs0.pdb.gz costs 279.295 real_cost = 383.937 T0286.try3-opt1.pdb.gz costs 272.131 real_cost = 388.337 T0286.try3-opt1-scwrl.pdb.gz costs 274.446 real_cost = 385.274 T0286.try2-opt2.repack-nonPC.pdb.gz costs 258.814 real_cost = 382.352 T0286.try2-opt2.pdb.gz costs 257.71 real_cost = 377.99 T0286.try2-opt2.gromacs0.pdb.gz costs 270.343 real_cost = 374.383 T0286.try2-opt1.pdb.gz costs 268.498 real_cost = 382.356 T0286.try2-opt1-scwrl.pdb.gz costs 270.751 real_cost = 386.149 T0286.try19-opt2.repack-nonPC.pdb.gz costs 243.436 real_cost = 378.654 T0286.try19-opt2.pdb.gz costs 238.901 real_cost = 375.161 T0286.try19-opt2.gromacs0.pdb.gz costs 258.285 real_cost = 375.165 T0286.try19-opt1.pdb.gz costs 246.099 real_cost = 378.801 T0286.try19-opt1-scwrl.pdb.gz costs 252.914 real_cost = 381.562 T0286.try18-opt2.repack-nonPC.pdb.gz costs 242.471 real_cost = 380.593 T0286.try18-opt2.pdb.gz costs 237.096 real_cost = 373.903 T0286.try18-opt2.gromacs0.pdb.gz costs 256.351 real_cost = 375.62 T0286.try18-opt1.pdb.gz costs 239.929 real_cost = 378.267 T0286.try18-opt1-scwrl.pdb.gz costs 248.405 real_cost = 381.461 T0286.try17-opt2.repack-nonPC.pdb.gz costs 252.186 real_cost = 380.229 T0286.try17-opt2.pdb.gz costs 249.626 real_cost = 376.755 T0286.try17-opt2.gromacs0.pdb.gz costs 264.449 real_cost = 376.898 T0286.try17-opt1.pdb.gz costs 262.06 real_cost = 378.241 T0286.try17-opt1-scwrl.pdb.gz costs 262.552 real_cost = 375.422 T0286.try16-opt2.repack-nonPC.pdb.gz costs 252.353 real_cost = 375.269 T0286.try16-opt2.pdb.gz costs 250.246 real_cost = 371.817 T0286.try16-opt2.gromacs0.pdb.gz costs 262.366 real_cost = 370.658 T0286.try16-opt1.pdb.gz costs 259.5 real_cost = 374.616 T0286.try16-opt1-scwrl.pdb.gz costs 264.64 real_cost = 378.252 T0286.try15-opt2.repack-nonPC.pdb.gz costs 245.31 real_cost = 381.638 T0286.try15-opt2.pdb.gz costs 240.541 real_cost = 371.558 T0286.try15-opt2.gromacs0.pdb.gz costs 257.702 real_cost = 366.467 T0286.try15-opt1.pdb.gz costs 241.791 real_cost = 371.862 T0286.try15-opt1-scwrl.pdb.gz costs 252.016 real_cost = 376.827 T0286.try14-opt2.repack-nonPC.pdb.gz costs 248.553 real_cost = 371.136 T0286.try14-opt2.pdb.gz costs 244.413 real_cost = 366.536 T0286.try14-opt2.gromacs0.pdb.gz costs 263.87 real_cost = 363.935 T0286.try14-opt1.pdb.gz costs 248.454 real_cost = 366.867 T0286.try14-opt1-scwrl.pdb.gz costs 256.775 real_cost = 371.549 T0286.try13-opt2.repack-nonPC.pdb.gz costs 246.344 real_cost = 381.728 T0286.try13-opt2.pdb.gz costs 242.089 real_cost = 371.636 T0286.try13-opt2.gromacs0.pdb.gz costs 258.111 real_cost = 365.801 T0286.try13-opt1.pdb.gz costs 244.142 real_cost = 367.114 T0286.try13-opt1-scwrl.pdb.gz costs 256.911 real_cost = 371.853 T0286.try12-opt2.repack-nonPC.pdb.gz costs 247.294 real_cost = 372.725 T0286.try12-opt2.pdb.gz costs 243.659 real_cost = 367.229 T0286.try12-opt2.gromacs0.pdb.gz costs 259.609 real_cost = 365.294 T0286.try12-opt1.pdb.gz costs 245.044 real_cost = 366.845 T0286.try12-opt1-scwrl.pdb.gz costs 257.318 real_cost = 371.718 T0286.try11-opt2.repack-nonPC.pdb.gz costs 249.397 real_cost = 377.791 T0286.try11-opt2.pdb.gz costs 247.322 real_cost = 377.286 T0286.try11-opt2.gromacs0.pdb.gz costs 265.097 real_cost = 377.134 T0286.try11-opt1.pdb.gz costs 256.583 real_cost = 381.564 T0286.try11-opt1-scwrl.pdb.gz costs 257.856 real_cost = 381.59 T0286.try10-opt2.repack-nonPC.pdb.gz costs 248.632 real_cost = 382.104 T0286.try10-opt2.pdb.gz costs 247.418 real_cost = 382.003 T0286.try10-opt2.gromacs0.pdb.gz costs 266.752 real_cost = 377.392 T0286.try10-opt1.pdb.gz costs 254.04 real_cost = 384.83 T0286.try10-opt1-scwrl.pdb.gz costs 254.945 real_cost = 384.953 T0286.try1-opt2.repack-nonPC.pdb.gz costs 257.064 real_cost = 374.624 T0286.try1-opt2.pdb.gz costs 255.737 real_cost = 373.819 T0286.try1-opt2.gromacs0.pdb.gz costs 268.94 real_cost = 370.837 T0286.try1-opt1.pdb.gz costs 264.687 real_cost = 382.977 T0286.try1-opt1-scwrl.pdb.gz costs 267.891 real_cost = 382.782 ../model5.ts-submitted costs 725.089 real_cost = 472.692 ../model4.ts-submitted costs 250.238 real_cost = 371.804 ../model3.ts-submitted costs 249.65 real_cost = 376.749 ../model2.ts-submitted costs 240.49 real_cost = 371.57 ../model1.ts-submitted costs 237.148 real_cost = 373.843 align5 costs 897.741 real_cost = 455.568 align4 costs 1801.26 real_cost = 480.049 align3 costs 1418.59 real_cost = 451.115 align2 costs 1179.3 real_cost = 425.925 align1 costs 1892.1 real_cost = 468.283 T0286.try1-opt2.pdb costs 255.737 real_cost = 373.819 model5-scwrl costs 725.089 real_cost = 472.692 model4-scwrl costs 250.238 real_cost = 371.804 model3-scwrl costs 249.65 real_cost = 376.749 model2-scwrl costs 240.49 real_cost = 371.57 model1-scwrl costs 237.148 real_cost = 373.843 T0286 costs 628.611 real_cost = -895 # command:CPU_time= 516.19 sec, elapsed time= 559.552 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty