mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0285.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0285/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173108343 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.19906 sec, elapsed time= 6.2821 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.28704 sec, elapsed time= 6.39781 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0285 numbered 1 through 125 Created new target T0285 from T0285.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0285.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0285.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0285.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 8.89465 sec, elapsed time= 9.52983 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -13.6 # GDT_score(maxd=8,maxw=2.9)= -12.5797 # GDT_score(maxd=8,maxw=3.2)= -12.0763 # GDT_score(maxd=8,maxw=3.5)= -11.6583 # GDT_score(maxd=10,maxw=3.8)= -13.0646 # GDT_score(maxd=10,maxw=4)= -12.7713 # GDT_score(maxd=10,maxw=4.2)= -12.4795 # GDT_score(maxd=12,maxw=4.3)= -13.9823 # GDT_score(maxd=12,maxw=4.5)= -13.6429 # GDT_score(maxd=12,maxw=4.7)= -13.3007 # GDT_score(maxd=14,maxw=5.2)= -14.0206 # GDT_score(maxd=14,maxw=5.5)= -13.5333 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2076256153.pdb -s /var/tmp/to_scwrl_2076256153.seq -o /var/tmp/from_scwrl_2076256153.pdb > /var/tmp/scwrl_2076256153.log Error: can't open any of /var/tmp/from_scwrl_2076256153.pdb or /var/tmp/from_scwrl_2076256153_b.pdb or /var/tmp/from_scwrl_2076256153_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -14.6 # GDT_score(maxd=8,maxw=2.9)= -13.1147 # GDT_score(maxd=8,maxw=3.2)= -12.5561 # GDT_score(maxd=8,maxw=3.5)= -12.0285 # GDT_score(maxd=10,maxw=3.8)= -13.7815 # GDT_score(maxd=10,maxw=4)= -13.3966 # GDT_score(maxd=10,maxw=4.2)= -13.0253 # GDT_score(maxd=12,maxw=4.3)= -14.7948 # GDT_score(maxd=12,maxw=4.5)= -14.3862 # GDT_score(maxd=12,maxw=4.7)= -14.0123 # GDT_score(maxd=14,maxw=5.2)= -14.8308 # GDT_score(maxd=14,maxw=5.5)= -14.2992 # command:# request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_943621431.pdb -s /var/tmp/to_scwrl_943621431.seq -o /var/tmp/from_scwrl_943621431.pdb > /var/tmp/scwrl_943621431.log Error: can't open any of /var/tmp/from_scwrl_943621431.pdb or /var/tmp/from_scwrl_943621431_b.pdb or /var/tmp/from_scwrl_943621431_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -11.8 # GDT_score(maxd=8,maxw=2.9)= -10.7078 # GDT_score(maxd=8,maxw=3.2)= -10.304 # GDT_score(maxd=8,maxw=3.5)= -9.96934 # GDT_score(maxd=10,maxw=3.8)= -11.2712 # GDT_score(maxd=10,maxw=4)= -11.0277 # GDT_score(maxd=10,maxw=4.2)= -10.7811 # GDT_score(maxd=12,maxw=4.3)= -12.3316 # GDT_score(maxd=12,maxw=4.5)= -12.0369 # GDT_score(maxd=12,maxw=4.7)= -11.763 # GDT_score(maxd=14,maxw=5.2)= -12.6708 # GDT_score(maxd=14,maxw=5.5)= -12.2466 # command:# request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1063179511.pdb -s /var/tmp/to_scwrl_1063179511.seq -o /var/tmp/from_scwrl_1063179511.pdb > /var/tmp/scwrl_1063179511.log Error: can't open any of /var/tmp/from_scwrl_1063179511.pdb or /var/tmp/from_scwrl_1063179511_b.pdb or /var/tmp/from_scwrl_1063179511_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -11.4 # GDT_score(maxd=8,maxw=2.9)= -10.2164 # GDT_score(maxd=8,maxw=3.2)= -9.78363 # GDT_score(maxd=8,maxw=3.5)= -9.40965 # GDT_score(maxd=10,maxw=3.8)= -10.8884 # GDT_score(maxd=10,maxw=4)= -10.584 # GDT_score(maxd=10,maxw=4.2)= -10.3085 # GDT_score(maxd=12,maxw=4.3)= -11.9295 # GDT_score(maxd=12,maxw=4.5)= -11.6126 # GDT_score(maxd=12,maxw=4.7)= -11.3227 # GDT_score(maxd=14,maxw=5.2)= -12.2746 # GDT_score(maxd=14,maxw=5.5)= -11.8669 # command:# request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1812759427.pdb -s /var/tmp/to_scwrl_1812759427.seq -o /var/tmp/from_scwrl_1812759427.pdb > /var/tmp/scwrl_1812759427.log Error: can't open any of /var/tmp/from_scwrl_1812759427.pdb or /var/tmp/from_scwrl_1812759427_b.pdb or /var/tmp/from_scwrl_1812759427_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -14 # GDT_score(maxd=8,maxw=2.9)= -11.6924 # GDT_score(maxd=8,maxw=3.2)= -11.1213 # GDT_score(maxd=8,maxw=3.5)= -10.648 # GDT_score(maxd=10,maxw=3.8)= -12.7826 # GDT_score(maxd=10,maxw=4)= -12.4235 # GDT_score(maxd=10,maxw=4.2)= -12.0985 # GDT_score(maxd=12,maxw=4.3)= -14.3338 # GDT_score(maxd=12,maxw=4.5)= -13.9431 # GDT_score(maxd=12,maxw=4.7)= -13.5541 # GDT_score(maxd=14,maxw=5.2)= -14.7193 # GDT_score(maxd=14,maxw=5.5)= -14.1346 # command:# request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1967866166.pdb -s /var/tmp/to_scwrl_1967866166.seq -o /var/tmp/from_scwrl_1967866166.pdb > /var/tmp/scwrl_1967866166.log Error: can't open any of /var/tmp/from_scwrl_1967866166.pdb or /var/tmp/from_scwrl_1967866166_b.pdb or /var/tmp/from_scwrl_1967866166_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0285.try1-opt2.pdb looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -14.6 # GDT_score(maxd=8,maxw=2.9)= -13.1838 # GDT_score(maxd=8,maxw=3.2)= -12.6188 # GDT_score(maxd=8,maxw=3.5)= -12.0737 # GDT_score(maxd=10,maxw=3.8)= -13.828 # GDT_score(maxd=10,maxw=4)= -13.4166 # GDT_score(maxd=10,maxw=4.2)= -13.0444 # GDT_score(maxd=12,maxw=4.3)= -14.8136 # GDT_score(maxd=12,maxw=4.5)= -14.4041 # GDT_score(maxd=12,maxw=4.7)= -14.0294 # GDT_score(maxd=14,maxw=5.2)= -14.8489 # GDT_score(maxd=14,maxw=5.5)= -14.3163 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0285.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.472 # GDT_score = -9.8 # GDT_score(maxd=8,maxw=2.9)= -8.73186 # GDT_score(maxd=8,maxw=3.2)= -8.36325 # GDT_score(maxd=8,maxw=3.5)= -8.05783 # GDT_score(maxd=10,maxw=3.8)= -9.42009 # GDT_score(maxd=10,maxw=4)= -9.18908 # GDT_score(maxd=10,maxw=4.2)= -8.98008 # GDT_score(maxd=12,maxw=4.3)= -10.3106 # GDT_score(maxd=12,maxw=4.5)= -10.0657 # GDT_score(maxd=12,maxw=4.7)= -9.84162 # GDT_score(maxd=14,maxw=5.2)= -10.3995 # GDT_score(maxd=14,maxw=5.5)= -10.0214 # command:# ReadConformPDB reading from PDB file T0285.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.656 # GDT_score = -10.6 # GDT_score(maxd=8,maxw=2.9)= -9.07483 # GDT_score(maxd=8,maxw=3.2)= -8.59906 # GDT_score(maxd=8,maxw=3.5)= -8.20486 # GDT_score(maxd=10,maxw=3.8)= -9.69346 # GDT_score(maxd=10,maxw=4)= -9.40879 # GDT_score(maxd=10,maxw=4.2)= -9.1508 # GDT_score(maxd=12,maxw=4.3)= -10.6221 # GDT_score(maxd=12,maxw=4.5)= -10.3208 # GDT_score(maxd=12,maxw=4.7)= -10.0178 # GDT_score(maxd=14,maxw=5.2)= -10.5943 # GDT_score(maxd=14,maxw=5.5)= -10.1473 # command:# ReadConformPDB reading from PDB file T0285.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0285.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0285.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try1-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try9-opt2.gromacs0.pdb.gz looking for model 1 Error: Reading chain from PDB file T0285.try9-opt2.gromacs0.pdb.gz failed. # ReadConformPDB reading from PDB file T0285.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0285.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1576048229.pdb -s /var/tmp/to_scwrl_1576048229.seq -o /var/tmp/from_scwrl_1576048229.pdb > /var/tmp/scwrl_1576048229.log Error: can't open any of /var/tmp/from_scwrl_1576048229.pdb or /var/tmp/from_scwrl_1576048229_b.pdb or /var/tmp/from_scwrl_1576048229_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1691624676.pdb -s /var/tmp/to_scwrl_1691624676.seq -o /var/tmp/from_scwrl_1691624676.pdb > /var/tmp/scwrl_1691624676.log Error: can't open any of /var/tmp/from_scwrl_1691624676.pdb or /var/tmp/from_scwrl_1691624676_b.pdb or /var/tmp/from_scwrl_1691624676_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_884790190.pdb -s /var/tmp/to_scwrl_884790190.seq -o /var/tmp/from_scwrl_884790190.pdb > /var/tmp/scwrl_884790190.log Error: can't open any of /var/tmp/from_scwrl_884790190.pdb or /var/tmp/from_scwrl_884790190_b.pdb or /var/tmp/from_scwrl_884790190_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1484057191.pdb -s /var/tmp/to_scwrl_1484057191.seq -o /var/tmp/from_scwrl_1484057191.pdb > /var/tmp/scwrl_1484057191.log Error: can't open any of /var/tmp/from_scwrl_1484057191.pdb or /var/tmp/from_scwrl_1484057191_b.pdb or /var/tmp/from_scwrl_1484057191_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_840694207.pdb -s /var/tmp/to_scwrl_840694207.seq -o /var/tmp/from_scwrl_840694207.pdb > /var/tmp/scwrl_840694207.log Error: can't open any of /var/tmp/from_scwrl_840694207.pdb or /var/tmp/from_scwrl_840694207_b.pdb or /var/tmp/from_scwrl_840694207_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1924469986.pdb -s /var/tmp/to_scwrl_1924469986.seq -o /var/tmp/from_scwrl_1924469986.pdb > /var/tmp/scwrl_1924469986.log Error: can't open any of /var/tmp/from_scwrl_1924469986.pdb or /var/tmp/from_scwrl_1924469986_b.pdb or /var/tmp/from_scwrl_1924469986_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1806316865.pdb -s /var/tmp/to_scwrl_1806316865.seq -o /var/tmp/from_scwrl_1806316865.pdb > /var/tmp/scwrl_1806316865.log Error: can't open any of /var/tmp/from_scwrl_1806316865.pdb or /var/tmp/from_scwrl_1806316865_b.pdb or /var/tmp/from_scwrl_1806316865_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2044551642.pdb -s /var/tmp/to_scwrl_2044551642.seq -o /var/tmp/from_scwrl_2044551642.pdb > /var/tmp/scwrl_2044551642.log Error: can't open any of /var/tmp/from_scwrl_2044551642.pdb or /var/tmp/from_scwrl_2044551642_b.pdb or /var/tmp/from_scwrl_2044551642_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_323461568.pdb -s /var/tmp/to_scwrl_323461568.seq -o /var/tmp/from_scwrl_323461568.pdb > /var/tmp/scwrl_323461568.log Error: can't open any of /var/tmp/from_scwrl_323461568.pdb or /var/tmp/from_scwrl_323461568_b.pdb or /var/tmp/from_scwrl_323461568_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_303758251.pdb -s /var/tmp/to_scwrl_303758251.seq -o /var/tmp/from_scwrl_303758251.pdb > /var/tmp/scwrl_303758251.log Error: can't open any of /var/tmp/from_scwrl_303758251.pdb or /var/tmp/from_scwrl_303758251_b.pdb or /var/tmp/from_scwrl_303758251_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_555342717.pdb -s /var/tmp/to_scwrl_555342717.seq -o /var/tmp/from_scwrl_555342717.pdb > /var/tmp/scwrl_555342717.log Error: can't open any of /var/tmp/from_scwrl_555342717.pdb or /var/tmp/from_scwrl_555342717_b.pdb or /var/tmp/from_scwrl_555342717_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1686972055.pdb -s /var/tmp/to_scwrl_1686972055.seq -o /var/tmp/from_scwrl_1686972055.pdb > /var/tmp/scwrl_1686972055.log Error: can't open any of /var/tmp/from_scwrl_1686972055.pdb or /var/tmp/from_scwrl_1686972055_b.pdb or /var/tmp/from_scwrl_1686972055_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1193217653.pdb -s /var/tmp/to_scwrl_1193217653.seq -o /var/tmp/from_scwrl_1193217653.pdb > /var/tmp/scwrl_1193217653.log Error: can't open any of /var/tmp/from_scwrl_1193217653.pdb or /var/tmp/from_scwrl_1193217653_b.pdb or /var/tmp/from_scwrl_1193217653_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_412610078.pdb -s /var/tmp/to_scwrl_412610078.seq -o /var/tmp/from_scwrl_412610078.pdb > /var/tmp/scwrl_412610078.log Error: can't open any of /var/tmp/from_scwrl_412610078.pdb or /var/tmp/from_scwrl_412610078_b.pdb or /var/tmp/from_scwrl_412610078_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1527156175.pdb -s /var/tmp/to_scwrl_1527156175.seq -o /var/tmp/from_scwrl_1527156175.pdb > /var/tmp/scwrl_1527156175.log Error: can't open any of /var/tmp/from_scwrl_1527156175.pdb or /var/tmp/from_scwrl_1527156175_b.pdb or /var/tmp/from_scwrl_1527156175_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1084943893.pdb -s /var/tmp/to_scwrl_1084943893.seq -o /var/tmp/from_scwrl_1084943893.pdb > /var/tmp/scwrl_1084943893.log Error: can't open any of /var/tmp/from_scwrl_1084943893.pdb or /var/tmp/from_scwrl_1084943893_b.pdb or /var/tmp/from_scwrl_1084943893_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_494593634.pdb -s /var/tmp/to_scwrl_494593634.seq -o /var/tmp/from_scwrl_494593634.pdb > /var/tmp/scwrl_494593634.log Error: can't open any of /var/tmp/from_scwrl_494593634.pdb or /var/tmp/from_scwrl_494593634_b.pdb or /var/tmp/from_scwrl_494593634_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1917942624.pdb -s /var/tmp/to_scwrl_1917942624.seq -o /var/tmp/from_scwrl_1917942624.pdb > /var/tmp/scwrl_1917942624.log Error: can't open any of /var/tmp/from_scwrl_1917942624.pdb or /var/tmp/from_scwrl_1917942624_b.pdb or /var/tmp/from_scwrl_1917942624_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1662620120.pdb -s /var/tmp/to_scwrl_1662620120.seq -o /var/tmp/from_scwrl_1662620120.pdb > /var/tmp/scwrl_1662620120.log Error: can't open any of /var/tmp/from_scwrl_1662620120.pdb or /var/tmp/from_scwrl_1662620120_b.pdb or /var/tmp/from_scwrl_1662620120_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1516629545.pdb -s /var/tmp/to_scwrl_1516629545.seq -o /var/tmp/from_scwrl_1516629545.pdb > /var/tmp/scwrl_1516629545.log Error: can't open any of /var/tmp/from_scwrl_1516629545.pdb or /var/tmp/from_scwrl_1516629545_b.pdb or /var/tmp/from_scwrl_1516629545_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1921501433.pdb -s /var/tmp/to_scwrl_1921501433.seq -o /var/tmp/from_scwrl_1921501433.pdb > /var/tmp/scwrl_1921501433.log Error: can't open any of /var/tmp/from_scwrl_1921501433.pdb or /var/tmp/from_scwrl_1921501433_b.pdb or /var/tmp/from_scwrl_1921501433_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1090107057.pdb -s /var/tmp/to_scwrl_1090107057.seq -o /var/tmp/from_scwrl_1090107057.pdb > /var/tmp/scwrl_1090107057.log Error: can't open any of /var/tmp/from_scwrl_1090107057.pdb or /var/tmp/from_scwrl_1090107057_b.pdb or /var/tmp/from_scwrl_1090107057_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1324407227.pdb -s /var/tmp/to_scwrl_1324407227.seq -o /var/tmp/from_scwrl_1324407227.pdb > /var/tmp/scwrl_1324407227.log Error: can't open any of /var/tmp/from_scwrl_1324407227.pdb or /var/tmp/from_scwrl_1324407227_b.pdb or /var/tmp/from_scwrl_1324407227_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1343756053.pdb -s /var/tmp/to_scwrl_1343756053.seq -o /var/tmp/from_scwrl_1343756053.pdb > /var/tmp/scwrl_1343756053.log Error: can't open any of /var/tmp/from_scwrl_1343756053.pdb or /var/tmp/from_scwrl_1343756053_b.pdb or /var/tmp/from_scwrl_1343756053_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_370722430.pdb -s /var/tmp/to_scwrl_370722430.seq -o /var/tmp/from_scwrl_370722430.pdb > /var/tmp/scwrl_370722430.log Error: can't open any of /var/tmp/from_scwrl_370722430.pdb or /var/tmp/from_scwrl_370722430_b.pdb or /var/tmp/from_scwrl_370722430_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2070000817.pdb -s /var/tmp/to_scwrl_2070000817.seq -o /var/tmp/from_scwrl_2070000817.pdb > /var/tmp/scwrl_2070000817.log Error: can't open any of /var/tmp/from_scwrl_2070000817.pdb or /var/tmp/from_scwrl_2070000817_b.pdb or /var/tmp/from_scwrl_2070000817_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1272528559.pdb -s /var/tmp/to_scwrl_1272528559.seq -o /var/tmp/from_scwrl_1272528559.pdb > /var/tmp/scwrl_1272528559.log Error: can't open any of /var/tmp/from_scwrl_1272528559.pdb or /var/tmp/from_scwrl_1272528559_b.pdb or /var/tmp/from_scwrl_1272528559_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1314343861.pdb -s /var/tmp/to_scwrl_1314343861.seq -o /var/tmp/from_scwrl_1314343861.pdb > /var/tmp/scwrl_1314343861.log Error: can't open any of /var/tmp/from_scwrl_1314343861.pdb or /var/tmp/from_scwrl_1314343861_b.pdb or /var/tmp/from_scwrl_1314343861_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_985696681.pdb -s /var/tmp/to_scwrl_985696681.seq -o /var/tmp/from_scwrl_985696681.pdb > /var/tmp/scwrl_985696681.log Error: can't open any of /var/tmp/from_scwrl_985696681.pdb or /var/tmp/from_scwrl_985696681_b.pdb or /var/tmp/from_scwrl_985696681_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_937804340.pdb -s /var/tmp/to_scwrl_937804340.seq -o /var/tmp/from_scwrl_937804340.pdb > /var/tmp/scwrl_937804340.log Error: can't open any of /var/tmp/from_scwrl_937804340.pdb or /var/tmp/from_scwrl_937804340_b.pdb or /var/tmp/from_scwrl_937804340_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1134726380.pdb -s /var/tmp/to_scwrl_1134726380.seq -o /var/tmp/from_scwrl_1134726380.pdb > /var/tmp/scwrl_1134726380.log Error: can't open any of /var/tmp/from_scwrl_1134726380.pdb or /var/tmp/from_scwrl_1134726380_b.pdb or /var/tmp/from_scwrl_1134726380_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_414261264.pdb -s /var/tmp/to_scwrl_414261264.seq -o /var/tmp/from_scwrl_414261264.pdb > /var/tmp/scwrl_414261264.log Error: can't open any of /var/tmp/from_scwrl_414261264.pdb or /var/tmp/from_scwrl_414261264_b.pdb or /var/tmp/from_scwrl_414261264_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_481945369.pdb -s /var/tmp/to_scwrl_481945369.seq -o /var/tmp/from_scwrl_481945369.pdb > /var/tmp/scwrl_481945369.log Error: can't open any of /var/tmp/from_scwrl_481945369.pdb or /var/tmp/from_scwrl_481945369_b.pdb or /var/tmp/from_scwrl_481945369_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2019516570.pdb -s /var/tmp/to_scwrl_2019516570.seq -o /var/tmp/from_scwrl_2019516570.pdb > /var/tmp/scwrl_2019516570.log Error: can't open any of /var/tmp/from_scwrl_2019516570.pdb or /var/tmp/from_scwrl_2019516570_b.pdb or /var/tmp/from_scwrl_2019516570_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1898318455.pdb -s /var/tmp/to_scwrl_1898318455.seq -o /var/tmp/from_scwrl_1898318455.pdb > /var/tmp/scwrl_1898318455.log Error: can't open any of /var/tmp/from_scwrl_1898318455.pdb or /var/tmp/from_scwrl_1898318455_b.pdb or /var/tmp/from_scwrl_1898318455_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1322639575.pdb -s /var/tmp/to_scwrl_1322639575.seq -o /var/tmp/from_scwrl_1322639575.pdb > /var/tmp/scwrl_1322639575.log Error: can't open any of /var/tmp/from_scwrl_1322639575.pdb or /var/tmp/from_scwrl_1322639575_b.pdb or /var/tmp/from_scwrl_1322639575_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1796502909.pdb -s /var/tmp/to_scwrl_1796502909.seq -o /var/tmp/from_scwrl_1796502909.pdb > /var/tmp/scwrl_1796502909.log Error: can't open any of /var/tmp/from_scwrl_1796502909.pdb or /var/tmp/from_scwrl_1796502909_b.pdb or /var/tmp/from_scwrl_1796502909_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1557151673.pdb -s /var/tmp/to_scwrl_1557151673.seq -o /var/tmp/from_scwrl_1557151673.pdb > /var/tmp/scwrl_1557151673.log Error: can't open any of /var/tmp/from_scwrl_1557151673.pdb or /var/tmp/from_scwrl_1557151673_b.pdb or /var/tmp/from_scwrl_1557151673_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1219707571.pdb -s /var/tmp/to_scwrl_1219707571.seq -o /var/tmp/from_scwrl_1219707571.pdb > /var/tmp/scwrl_1219707571.log Error: can't open any of /var/tmp/from_scwrl_1219707571.pdb or /var/tmp/from_scwrl_1219707571_b.pdb or /var/tmp/from_scwrl_1219707571_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2119964477.pdb -s /var/tmp/to_scwrl_2119964477.seq -o /var/tmp/from_scwrl_2119964477.pdb > /var/tmp/scwrl_2119964477.log Error: can't open any of /var/tmp/from_scwrl_2119964477.pdb or /var/tmp/from_scwrl_2119964477_b.pdb or /var/tmp/from_scwrl_2119964477_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1860909924.pdb -s /var/tmp/to_scwrl_1860909924.seq -o /var/tmp/from_scwrl_1860909924.pdb > /var/tmp/scwrl_1860909924.log Error: can't open any of /var/tmp/from_scwrl_1860909924.pdb or /var/tmp/from_scwrl_1860909924_b.pdb or /var/tmp/from_scwrl_1860909924_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1775050288.pdb -s /var/tmp/to_scwrl_1775050288.seq -o /var/tmp/from_scwrl_1775050288.pdb > /var/tmp/scwrl_1775050288.log Error: can't open any of /var/tmp/from_scwrl_1775050288.pdb or /var/tmp/from_scwrl_1775050288_b.pdb or /var/tmp/from_scwrl_1775050288_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1659452886.pdb -s /var/tmp/to_scwrl_1659452886.seq -o /var/tmp/from_scwrl_1659452886.pdb > /var/tmp/scwrl_1659452886.log Error: can't open any of /var/tmp/from_scwrl_1659452886.pdb or /var/tmp/from_scwrl_1659452886_b.pdb or /var/tmp/from_scwrl_1659452886_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_906643931.pdb -s /var/tmp/to_scwrl_906643931.seq -o /var/tmp/from_scwrl_906643931.pdb > /var/tmp/scwrl_906643931.log Error: can't open any of /var/tmp/from_scwrl_906643931.pdb or /var/tmp/from_scwrl_906643931_b.pdb or /var/tmp/from_scwrl_906643931_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_40176719.pdb -s /var/tmp/to_scwrl_40176719.seq -o /var/tmp/from_scwrl_40176719.pdb > /var/tmp/scwrl_40176719.log Error: can't open any of /var/tmp/from_scwrl_40176719.pdb or /var/tmp/from_scwrl_40176719_b.pdb or /var/tmp/from_scwrl_40176719_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1039125415.pdb -s /var/tmp/to_scwrl_1039125415.seq -o /var/tmp/from_scwrl_1039125415.pdb > /var/tmp/scwrl_1039125415.log Error: can't open any of /var/tmp/from_scwrl_1039125415.pdb or /var/tmp/from_scwrl_1039125415_b.pdb or /var/tmp/from_scwrl_1039125415_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1991587824.pdb -s /var/tmp/to_scwrl_1991587824.seq -o /var/tmp/from_scwrl_1991587824.pdb > /var/tmp/scwrl_1991587824.log Error: can't open any of /var/tmp/from_scwrl_1991587824.pdb or /var/tmp/from_scwrl_1991587824_b.pdb or /var/tmp/from_scwrl_1991587824_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_534770353.pdb -s /var/tmp/to_scwrl_534770353.seq -o /var/tmp/from_scwrl_534770353.pdb > /var/tmp/scwrl_534770353.log Error: can't open any of /var/tmp/from_scwrl_534770353.pdb or /var/tmp/from_scwrl_534770353_b.pdb or /var/tmp/from_scwrl_534770353_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_809584393.pdb -s /var/tmp/to_scwrl_809584393.seq -o /var/tmp/from_scwrl_809584393.pdb > /var/tmp/scwrl_809584393.log Error: can't open any of /var/tmp/from_scwrl_809584393.pdb or /var/tmp/from_scwrl_809584393_b.pdb or /var/tmp/from_scwrl_809584393_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1506724298.pdb -s /var/tmp/to_scwrl_1506724298.seq -o /var/tmp/from_scwrl_1506724298.pdb > /var/tmp/scwrl_1506724298.log Error: can't open any of /var/tmp/from_scwrl_1506724298.pdb or /var/tmp/from_scwrl_1506724298_b.pdb or /var/tmp/from_scwrl_1506724298_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2051399898.pdb -s /var/tmp/to_scwrl_2051399898.seq -o /var/tmp/from_scwrl_2051399898.pdb > /var/tmp/scwrl_2051399898.log Error: can't open any of /var/tmp/from_scwrl_2051399898.pdb or /var/tmp/from_scwrl_2051399898_b.pdb or /var/tmp/from_scwrl_2051399898_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_583602179.pdb -s /var/tmp/to_scwrl_583602179.seq -o /var/tmp/from_scwrl_583602179.pdb > /var/tmp/scwrl_583602179.log Error: can't open any of /var/tmp/from_scwrl_583602179.pdb or /var/tmp/from_scwrl_583602179_b.pdb or /var/tmp/from_scwrl_583602179_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_449347709.pdb -s /var/tmp/to_scwrl_449347709.seq -o /var/tmp/from_scwrl_449347709.pdb > /var/tmp/scwrl_449347709.log Error: can't open any of /var/tmp/from_scwrl_449347709.pdb or /var/tmp/from_scwrl_449347709_b.pdb or /var/tmp/from_scwrl_449347709_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1228323479.pdb -s /var/tmp/to_scwrl_1228323479.seq -o /var/tmp/from_scwrl_1228323479.pdb > /var/tmp/scwrl_1228323479.log Error: can't open any of /var/tmp/from_scwrl_1228323479.pdb or /var/tmp/from_scwrl_1228323479_b.pdb or /var/tmp/from_scwrl_1228323479_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1927358233.pdb -s /var/tmp/to_scwrl_1927358233.seq -o /var/tmp/from_scwrl_1927358233.pdb > /var/tmp/scwrl_1927358233.log Error: can't open any of /var/tmp/from_scwrl_1927358233.pdb or /var/tmp/from_scwrl_1927358233_b.pdb or /var/tmp/from_scwrl_1927358233_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_820070140.pdb -s /var/tmp/to_scwrl_820070140.seq -o /var/tmp/from_scwrl_820070140.pdb > /var/tmp/scwrl_820070140.log Error: can't open any of /var/tmp/from_scwrl_820070140.pdb or /var/tmp/from_scwrl_820070140_b.pdb or /var/tmp/from_scwrl_820070140_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1150840649.pdb -s /var/tmp/to_scwrl_1150840649.seq -o /var/tmp/from_scwrl_1150840649.pdb > /var/tmp/scwrl_1150840649.log Error: can't open any of /var/tmp/from_scwrl_1150840649.pdb or /var/tmp/from_scwrl_1150840649_b.pdb or /var/tmp/from_scwrl_1150840649_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1052403146.pdb -s /var/tmp/to_scwrl_1052403146.seq -o /var/tmp/from_scwrl_1052403146.pdb > /var/tmp/scwrl_1052403146.log Error: can't open any of /var/tmp/from_scwrl_1052403146.pdb or /var/tmp/from_scwrl_1052403146_b.pdb or /var/tmp/from_scwrl_1052403146_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2134414001.pdb -s /var/tmp/to_scwrl_2134414001.seq -o /var/tmp/from_scwrl_2134414001.pdb > /var/tmp/scwrl_2134414001.log Error: can't open any of /var/tmp/from_scwrl_2134414001.pdb or /var/tmp/from_scwrl_2134414001_b.pdb or /var/tmp/from_scwrl_2134414001_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2136537331.pdb -s /var/tmp/to_scwrl_2136537331.seq -o /var/tmp/from_scwrl_2136537331.pdb > /var/tmp/scwrl_2136537331.log Error: can't open any of /var/tmp/from_scwrl_2136537331.pdb or /var/tmp/from_scwrl_2136537331_b.pdb or /var/tmp/from_scwrl_2136537331_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1990207486.pdb -s /var/tmp/to_scwrl_1990207486.seq -o /var/tmp/from_scwrl_1990207486.pdb > /var/tmp/scwrl_1990207486.log Error: can't open any of /var/tmp/from_scwrl_1990207486.pdb or /var/tmp/from_scwrl_1990207486_b.pdb or /var/tmp/from_scwrl_1990207486_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1121656734.pdb -s /var/tmp/to_scwrl_1121656734.seq -o /var/tmp/from_scwrl_1121656734.pdb > /var/tmp/scwrl_1121656734.log Error: can't open any of /var/tmp/from_scwrl_1121656734.pdb or /var/tmp/from_scwrl_1121656734_b.pdb or /var/tmp/from_scwrl_1121656734_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_403314948.pdb -s /var/tmp/to_scwrl_403314948.seq -o /var/tmp/from_scwrl_403314948.pdb > /var/tmp/scwrl_403314948.log Error: can't open any of /var/tmp/from_scwrl_403314948.pdb or /var/tmp/from_scwrl_403314948_b.pdb or /var/tmp/from_scwrl_403314948_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_324669208.pdb -s /var/tmp/to_scwrl_324669208.seq -o /var/tmp/from_scwrl_324669208.pdb > /var/tmp/scwrl_324669208.log Error: can't open any of /var/tmp/from_scwrl_324669208.pdb or /var/tmp/from_scwrl_324669208_b.pdb or /var/tmp/from_scwrl_324669208_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_993689659.pdb -s /var/tmp/to_scwrl_993689659.seq -o /var/tmp/from_scwrl_993689659.pdb > /var/tmp/scwrl_993689659.log Error: can't open any of /var/tmp/from_scwrl_993689659.pdb or /var/tmp/from_scwrl_993689659_b.pdb or /var/tmp/from_scwrl_993689659_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_154149756.pdb -s /var/tmp/to_scwrl_154149756.seq -o /var/tmp/from_scwrl_154149756.pdb > /var/tmp/scwrl_154149756.log Error: can't open any of /var/tmp/from_scwrl_154149756.pdb or /var/tmp/from_scwrl_154149756_b.pdb or /var/tmp/from_scwrl_154149756_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1647308784.pdb -s /var/tmp/to_scwrl_1647308784.seq -o /var/tmp/from_scwrl_1647308784.pdb > /var/tmp/scwrl_1647308784.log Error: can't open any of /var/tmp/from_scwrl_1647308784.pdb or /var/tmp/from_scwrl_1647308784_b.pdb or /var/tmp/from_scwrl_1647308784_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_642708921.pdb -s /var/tmp/to_scwrl_642708921.seq -o /var/tmp/from_scwrl_642708921.pdb > /var/tmp/scwrl_642708921.log Error: can't open any of /var/tmp/from_scwrl_642708921.pdb or /var/tmp/from_scwrl_642708921_b.pdb or /var/tmp/from_scwrl_642708921_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1711301429.pdb -s /var/tmp/to_scwrl_1711301429.seq -o /var/tmp/from_scwrl_1711301429.pdb > /var/tmp/scwrl_1711301429.log Error: can't open any of /var/tmp/from_scwrl_1711301429.pdb or /var/tmp/from_scwrl_1711301429_b.pdb or /var/tmp/from_scwrl_1711301429_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_719532709.pdb -s /var/tmp/to_scwrl_719532709.seq -o /var/tmp/from_scwrl_719532709.pdb > /var/tmp/scwrl_719532709.log Error: can't open any of /var/tmp/from_scwrl_719532709.pdb or /var/tmp/from_scwrl_719532709_b.pdb or /var/tmp/from_scwrl_719532709_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_615189752.pdb -s /var/tmp/to_scwrl_615189752.seq -o /var/tmp/from_scwrl_615189752.pdb > /var/tmp/scwrl_615189752.log Error: can't open any of /var/tmp/from_scwrl_615189752.pdb or /var/tmp/from_scwrl_615189752_b.pdb or /var/tmp/from_scwrl_615189752_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1424727706.pdb -s /var/tmp/to_scwrl_1424727706.seq -o /var/tmp/from_scwrl_1424727706.pdb > /var/tmp/scwrl_1424727706.log Error: can't open any of /var/tmp/from_scwrl_1424727706.pdb or /var/tmp/from_scwrl_1424727706_b.pdb or /var/tmp/from_scwrl_1424727706_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_347099350.pdb -s /var/tmp/to_scwrl_347099350.seq -o /var/tmp/from_scwrl_347099350.pdb > /var/tmp/scwrl_347099350.log Error: can't open any of /var/tmp/from_scwrl_347099350.pdb or /var/tmp/from_scwrl_347099350_b.pdb or /var/tmp/from_scwrl_347099350_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_127158991.pdb -s /var/tmp/to_scwrl_127158991.seq -o /var/tmp/from_scwrl_127158991.pdb > /var/tmp/scwrl_127158991.log Error: can't open any of /var/tmp/from_scwrl_127158991.pdb or /var/tmp/from_scwrl_127158991_b.pdb or /var/tmp/from_scwrl_127158991_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_183887991.pdb -s /var/tmp/to_scwrl_183887991.seq -o /var/tmp/from_scwrl_183887991.pdb > /var/tmp/scwrl_183887991.log Error: can't open any of /var/tmp/from_scwrl_183887991.pdb or /var/tmp/from_scwrl_183887991_b.pdb or /var/tmp/from_scwrl_183887991_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_387276069.pdb -s /var/tmp/to_scwrl_387276069.seq -o /var/tmp/from_scwrl_387276069.pdb > /var/tmp/scwrl_387276069.log Error: can't open any of /var/tmp/from_scwrl_387276069.pdb or /var/tmp/from_scwrl_387276069_b.pdb or /var/tmp/from_scwrl_387276069_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1166284405.pdb -s /var/tmp/to_scwrl_1166284405.seq -o /var/tmp/from_scwrl_1166284405.pdb > /var/tmp/scwrl_1166284405.log Error: can't open any of /var/tmp/from_scwrl_1166284405.pdb or /var/tmp/from_scwrl_1166284405_b.pdb or /var/tmp/from_scwrl_1166284405_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_27992168.pdb -s /var/tmp/to_scwrl_27992168.seq -o /var/tmp/from_scwrl_27992168.pdb > /var/tmp/scwrl_27992168.log Error: can't open any of /var/tmp/from_scwrl_27992168.pdb or /var/tmp/from_scwrl_27992168_b.pdb or /var/tmp/from_scwrl_27992168_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_922046422.pdb -s /var/tmp/to_scwrl_922046422.seq -o /var/tmp/from_scwrl_922046422.pdb > /var/tmp/scwrl_922046422.log Error: can't open any of /var/tmp/from_scwrl_922046422.pdb or /var/tmp/from_scwrl_922046422_b.pdb or /var/tmp/from_scwrl_922046422_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1975868798.pdb -s /var/tmp/to_scwrl_1975868798.seq -o /var/tmp/from_scwrl_1975868798.pdb > /var/tmp/scwrl_1975868798.log Error: can't open any of /var/tmp/from_scwrl_1975868798.pdb or /var/tmp/from_scwrl_1975868798_b.pdb or /var/tmp/from_scwrl_1975868798_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1534716466.pdb -s /var/tmp/to_scwrl_1534716466.seq -o /var/tmp/from_scwrl_1534716466.pdb > /var/tmp/scwrl_1534716466.log Error: can't open any of /var/tmp/from_scwrl_1534716466.pdb or /var/tmp/from_scwrl_1534716466_b.pdb or /var/tmp/from_scwrl_1534716466_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_825962674.pdb -s /var/tmp/to_scwrl_825962674.seq -o /var/tmp/from_scwrl_825962674.pdb > /var/tmp/scwrl_825962674.log Error: can't open any of /var/tmp/from_scwrl_825962674.pdb or /var/tmp/from_scwrl_825962674_b.pdb or /var/tmp/from_scwrl_825962674_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_411987331.pdb -s /var/tmp/to_scwrl_411987331.seq -o /var/tmp/from_scwrl_411987331.pdb > /var/tmp/scwrl_411987331.log Error: can't open any of /var/tmp/from_scwrl_411987331.pdb or /var/tmp/from_scwrl_411987331_b.pdb or /var/tmp/from_scwrl_411987331_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1984064176.pdb -s /var/tmp/to_scwrl_1984064176.seq -o /var/tmp/from_scwrl_1984064176.pdb > /var/tmp/scwrl_1984064176.log Error: can't open any of /var/tmp/from_scwrl_1984064176.pdb or /var/tmp/from_scwrl_1984064176_b.pdb or /var/tmp/from_scwrl_1984064176_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2054286153.pdb -s /var/tmp/to_scwrl_2054286153.seq -o /var/tmp/from_scwrl_2054286153.pdb > /var/tmp/scwrl_2054286153.log Error: can't open any of /var/tmp/from_scwrl_2054286153.pdb or /var/tmp/from_scwrl_2054286153_b.pdb or /var/tmp/from_scwrl_2054286153_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_191861917.pdb -s /var/tmp/to_scwrl_191861917.seq -o /var/tmp/from_scwrl_191861917.pdb > /var/tmp/scwrl_191861917.log Error: can't open any of /var/tmp/from_scwrl_191861917.pdb or /var/tmp/from_scwrl_191861917_b.pdb or /var/tmp/from_scwrl_191861917_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_656650669.pdb -s /var/tmp/to_scwrl_656650669.seq -o /var/tmp/from_scwrl_656650669.pdb > /var/tmp/scwrl_656650669.log Error: can't open any of /var/tmp/from_scwrl_656650669.pdb or /var/tmp/from_scwrl_656650669_b.pdb or /var/tmp/from_scwrl_656650669_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1057643156.pdb -s /var/tmp/to_scwrl_1057643156.seq -o /var/tmp/from_scwrl_1057643156.pdb > /var/tmp/scwrl_1057643156.log Error: can't open any of /var/tmp/from_scwrl_1057643156.pdb or /var/tmp/from_scwrl_1057643156_b.pdb or /var/tmp/from_scwrl_1057643156_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1244265062.pdb -s /var/tmp/to_scwrl_1244265062.seq -o /var/tmp/from_scwrl_1244265062.pdb > /var/tmp/scwrl_1244265062.log Error: can't open any of /var/tmp/from_scwrl_1244265062.pdb or /var/tmp/from_scwrl_1244265062_b.pdb or /var/tmp/from_scwrl_1244265062_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_643581023.pdb -s /var/tmp/to_scwrl_643581023.seq -o /var/tmp/from_scwrl_643581023.pdb > /var/tmp/scwrl_643581023.log Error: can't open any of /var/tmp/from_scwrl_643581023.pdb or /var/tmp/from_scwrl_643581023_b.pdb or /var/tmp/from_scwrl_643581023_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1046696840.pdb -s /var/tmp/to_scwrl_1046696840.seq -o /var/tmp/from_scwrl_1046696840.pdb > /var/tmp/scwrl_1046696840.log Error: can't open any of /var/tmp/from_scwrl_1046696840.pdb or /var/tmp/from_scwrl_1046696840_b.pdb or /var/tmp/from_scwrl_1046696840_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1086988901.pdb -s /var/tmp/to_scwrl_1086988901.seq -o /var/tmp/from_scwrl_1086988901.pdb > /var/tmp/scwrl_1086988901.log Error: can't open any of /var/tmp/from_scwrl_1086988901.pdb or /var/tmp/from_scwrl_1086988901_b.pdb or /var/tmp/from_scwrl_1086988901_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1765237757.pdb -s /var/tmp/to_scwrl_1765237757.seq -o /var/tmp/from_scwrl_1765237757.pdb > /var/tmp/scwrl_1765237757.log Error: can't open any of /var/tmp/from_scwrl_1765237757.pdb or /var/tmp/from_scwrl_1765237757_b.pdb or /var/tmp/from_scwrl_1765237757_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1450011787.pdb -s /var/tmp/to_scwrl_1450011787.seq -o /var/tmp/from_scwrl_1450011787.pdb > /var/tmp/scwrl_1450011787.log Error: can't open any of /var/tmp/from_scwrl_1450011787.pdb or /var/tmp/from_scwrl_1450011787_b.pdb or /var/tmp/from_scwrl_1450011787_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1411658110.pdb -s /var/tmp/to_scwrl_1411658110.seq -o /var/tmp/from_scwrl_1411658110.pdb > /var/tmp/scwrl_1411658110.log Error: can't open any of /var/tmp/from_scwrl_1411658110.pdb or /var/tmp/from_scwrl_1411658110_b.pdb or /var/tmp/from_scwrl_1411658110_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_611443769.pdb -s /var/tmp/to_scwrl_611443769.seq -o /var/tmp/from_scwrl_611443769.pdb > /var/tmp/scwrl_611443769.log Error: can't open any of /var/tmp/from_scwrl_611443769.pdb or /var/tmp/from_scwrl_611443769_b.pdb or /var/tmp/from_scwrl_611443769_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1604161543.pdb -s /var/tmp/to_scwrl_1604161543.seq -o /var/tmp/from_scwrl_1604161543.pdb > /var/tmp/scwrl_1604161543.log Error: can't open any of /var/tmp/from_scwrl_1604161543.pdb or /var/tmp/from_scwrl_1604161543_b.pdb or /var/tmp/from_scwrl_1604161543_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_911483248.pdb -s /var/tmp/to_scwrl_911483248.seq -o /var/tmp/from_scwrl_911483248.pdb > /var/tmp/scwrl_911483248.log Error: can't open any of /var/tmp/from_scwrl_911483248.pdb or /var/tmp/from_scwrl_911483248_b.pdb or /var/tmp/from_scwrl_911483248_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1254152690.pdb -s /var/tmp/to_scwrl_1254152690.seq -o /var/tmp/from_scwrl_1254152690.pdb > /var/tmp/scwrl_1254152690.log Error: can't open any of /var/tmp/from_scwrl_1254152690.pdb or /var/tmp/from_scwrl_1254152690_b.pdb or /var/tmp/from_scwrl_1254152690_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1167979325.pdb -s /var/tmp/to_scwrl_1167979325.seq -o /var/tmp/from_scwrl_1167979325.pdb > /var/tmp/scwrl_1167979325.log Error: can't open any of /var/tmp/from_scwrl_1167979325.pdb or /var/tmp/from_scwrl_1167979325_b.pdb or /var/tmp/from_scwrl_1167979325_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1631015956.pdb -s /var/tmp/to_scwrl_1631015956.seq -o /var/tmp/from_scwrl_1631015956.pdb > /var/tmp/scwrl_1631015956.log Error: can't open any of /var/tmp/from_scwrl_1631015956.pdb or /var/tmp/from_scwrl_1631015956_b.pdb or /var/tmp/from_scwrl_1631015956_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1869342442.pdb -s /var/tmp/to_scwrl_1869342442.seq -o /var/tmp/from_scwrl_1869342442.pdb > /var/tmp/scwrl_1869342442.log Error: can't open any of /var/tmp/from_scwrl_1869342442.pdb or /var/tmp/from_scwrl_1869342442_b.pdb or /var/tmp/from_scwrl_1869342442_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_445223386.pdb -s /var/tmp/to_scwrl_445223386.seq -o /var/tmp/from_scwrl_445223386.pdb > /var/tmp/scwrl_445223386.log Error: can't open any of /var/tmp/from_scwrl_445223386.pdb or /var/tmp/from_scwrl_445223386_b.pdb or /var/tmp/from_scwrl_445223386_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1978115306.pdb -s /var/tmp/to_scwrl_1978115306.seq -o /var/tmp/from_scwrl_1978115306.pdb > /var/tmp/scwrl_1978115306.log Error: can't open any of /var/tmp/from_scwrl_1978115306.pdb or /var/tmp/from_scwrl_1978115306_b.pdb or /var/tmp/from_scwrl_1978115306_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1996501433.pdb -s /var/tmp/to_scwrl_1996501433.seq -o /var/tmp/from_scwrl_1996501433.pdb > /var/tmp/scwrl_1996501433.log Error: can't open any of /var/tmp/from_scwrl_1996501433.pdb or /var/tmp/from_scwrl_1996501433_b.pdb or /var/tmp/from_scwrl_1996501433_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed. # naming current conformation MIG_FROST_FLEX_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_629111377.pdb -s /var/tmp/to_scwrl_629111377.seq -o /var/tmp/from_scwrl_629111377.pdb > /var/tmp/scwrl_629111377.log Error: can't open any of /var/tmp/from_scwrl_629111377.pdb or /var/tmp/from_scwrl_629111377_b.pdb or /var/tmp/from_scwrl_629111377_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_FLEX_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 14 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_217907728.pdb -s /var/tmp/to_scwrl_217907728.seq -o /var/tmp/from_scwrl_217907728.pdb > /var/tmp/scwrl_217907728.log Error: can't open any of /var/tmp/from_scwrl_217907728.pdb or /var/tmp/from_scwrl_217907728_b.pdb or /var/tmp/from_scwrl_217907728_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1015302192.pdb -s /var/tmp/to_scwrl_1015302192.seq -o /var/tmp/from_scwrl_1015302192.pdb > /var/tmp/scwrl_1015302192.log Error: can't open any of /var/tmp/from_scwrl_1015302192.pdb or /var/tmp/from_scwrl_1015302192_b.pdb or /var/tmp/from_scwrl_1015302192_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_657103545.pdb -s /var/tmp/to_scwrl_657103545.seq -o /var/tmp/from_scwrl_657103545.pdb > /var/tmp/scwrl_657103545.log Error: can't open any of /var/tmp/from_scwrl_657103545.pdb or /var/tmp/from_scwrl_657103545_b.pdb or /var/tmp/from_scwrl_657103545_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1139954149.pdb -s /var/tmp/to_scwrl_1139954149.seq -o /var/tmp/from_scwrl_1139954149.pdb > /var/tmp/scwrl_1139954149.log Error: can't open any of /var/tmp/from_scwrl_1139954149.pdb or /var/tmp/from_scwrl_1139954149_b.pdb or /var/tmp/from_scwrl_1139954149_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_843687344.pdb -s /var/tmp/to_scwrl_843687344.seq -o /var/tmp/from_scwrl_843687344.pdb > /var/tmp/scwrl_843687344.log Error: can't open any of /var/tmp/from_scwrl_843687344.pdb or /var/tmp/from_scwrl_843687344_b.pdb or /var/tmp/from_scwrl_843687344_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_44336365.pdb -s /var/tmp/to_scwrl_44336365.seq -o /var/tmp/from_scwrl_44336365.pdb > /var/tmp/scwrl_44336365.log Error: can't open any of /var/tmp/from_scwrl_44336365.pdb or /var/tmp/from_scwrl_44336365_b.pdb or /var/tmp/from_scwrl_44336365_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1965916823.pdb -s /var/tmp/to_scwrl_1965916823.seq -o /var/tmp/from_scwrl_1965916823.pdb > /var/tmp/scwrl_1965916823.log Error: can't open any of /var/tmp/from_scwrl_1965916823.pdb or /var/tmp/from_scwrl_1965916823_b.pdb or /var/tmp/from_scwrl_1965916823_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1255674674.pdb -s /var/tmp/to_scwrl_1255674674.seq -o /var/tmp/from_scwrl_1255674674.pdb > /var/tmp/scwrl_1255674674.log Error: can't open any of /var/tmp/from_scwrl_1255674674.pdb or /var/tmp/from_scwrl_1255674674_b.pdb or /var/tmp/from_scwrl_1255674674_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2028400541.pdb -s /var/tmp/to_scwrl_2028400541.seq -o /var/tmp/from_scwrl_2028400541.pdb > /var/tmp/scwrl_2028400541.log Error: can't open any of /var/tmp/from_scwrl_2028400541.pdb or /var/tmp/from_scwrl_2028400541_b.pdb or /var/tmp/from_scwrl_2028400541_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1872719329.pdb -s /var/tmp/to_scwrl_1872719329.seq -o /var/tmp/from_scwrl_1872719329.pdb > /var/tmp/scwrl_1872719329.log Error: can't open any of /var/tmp/from_scwrl_1872719329.pdb or /var/tmp/from_scwrl_1872719329_b.pdb or /var/tmp/from_scwrl_1872719329_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1447536591.pdb -s /var/tmp/to_scwrl_1447536591.seq -o /var/tmp/from_scwrl_1447536591.pdb > /var/tmp/scwrl_1447536591.log Error: can't open any of /var/tmp/from_scwrl_1447536591.pdb or /var/tmp/from_scwrl_1447536591_b.pdb or /var/tmp/from_scwrl_1447536591_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_537567563.pdb -s /var/tmp/to_scwrl_537567563.seq -o /var/tmp/from_scwrl_537567563.pdb > /var/tmp/scwrl_537567563.log Error: can't open any of /var/tmp/from_scwrl_537567563.pdb or /var/tmp/from_scwrl_537567563_b.pdb or /var/tmp/from_scwrl_537567563_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_782878839.pdb -s /var/tmp/to_scwrl_782878839.seq -o /var/tmp/from_scwrl_782878839.pdb > /var/tmp/scwrl_782878839.log Error: can't open any of /var/tmp/from_scwrl_782878839.pdb or /var/tmp/from_scwrl_782878839_b.pdb or /var/tmp/from_scwrl_782878839_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_544318007.pdb -s /var/tmp/to_scwrl_544318007.seq -o /var/tmp/from_scwrl_544318007.pdb > /var/tmp/scwrl_544318007.log Error: can't open any of /var/tmp/from_scwrl_544318007.pdb or /var/tmp/from_scwrl_544318007_b.pdb or /var/tmp/from_scwrl_544318007_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1181148585.pdb -s /var/tmp/to_scwrl_1181148585.seq -o /var/tmp/from_scwrl_1181148585.pdb > /var/tmp/scwrl_1181148585.log Error: can't open any of /var/tmp/from_scwrl_1181148585.pdb or /var/tmp/from_scwrl_1181148585_b.pdb or /var/tmp/from_scwrl_1181148585_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1829575678.pdb -s /var/tmp/to_scwrl_1829575678.seq -o /var/tmp/from_scwrl_1829575678.pdb > /var/tmp/scwrl_1829575678.log Error: can't open any of /var/tmp/from_scwrl_1829575678.pdb or /var/tmp/from_scwrl_1829575678_b.pdb or /var/tmp/from_scwrl_1829575678_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1631306909.pdb -s /var/tmp/to_scwrl_1631306909.seq -o /var/tmp/from_scwrl_1631306909.pdb > /var/tmp/scwrl_1631306909.log Error: can't open any of /var/tmp/from_scwrl_1631306909.pdb or /var/tmp/from_scwrl_1631306909_b.pdb or /var/tmp/from_scwrl_1631306909_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_798902696.pdb -s /var/tmp/to_scwrl_798902696.seq -o /var/tmp/from_scwrl_798902696.pdb > /var/tmp/scwrl_798902696.log Error: can't open any of /var/tmp/from_scwrl_798902696.pdb or /var/tmp/from_scwrl_798902696_b.pdb or /var/tmp/from_scwrl_798902696_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1132103819.pdb -s /var/tmp/to_scwrl_1132103819.seq -o /var/tmp/from_scwrl_1132103819.pdb > /var/tmp/scwrl_1132103819.log Error: can't open any of /var/tmp/from_scwrl_1132103819.pdb or /var/tmp/from_scwrl_1132103819_b.pdb or /var/tmp/from_scwrl_1132103819_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_895481373.pdb -s /var/tmp/to_scwrl_895481373.seq -o /var/tmp/from_scwrl_895481373.pdb > /var/tmp/scwrl_895481373.log Error: can't open any of /var/tmp/from_scwrl_895481373.pdb or /var/tmp/from_scwrl_895481373_b.pdb or /var/tmp/from_scwrl_895481373_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1410346465.pdb -s /var/tmp/to_scwrl_1410346465.seq -o /var/tmp/from_scwrl_1410346465.pdb > /var/tmp/scwrl_1410346465.log Error: can't open any of /var/tmp/from_scwrl_1410346465.pdb or /var/tmp/from_scwrl_1410346465_b.pdb or /var/tmp/from_scwrl_1410346465_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_588781716.pdb -s /var/tmp/to_scwrl_588781716.seq -o /var/tmp/from_scwrl_588781716.pdb > /var/tmp/scwrl_588781716.log Error: can't open any of /var/tmp/from_scwrl_588781716.pdb or /var/tmp/from_scwrl_588781716_b.pdb or /var/tmp/from_scwrl_588781716_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1806964620.pdb -s /var/tmp/to_scwrl_1806964620.seq -o /var/tmp/from_scwrl_1806964620.pdb > /var/tmp/scwrl_1806964620.log Error: can't open any of /var/tmp/from_scwrl_1806964620.pdb or /var/tmp/from_scwrl_1806964620_b.pdb or /var/tmp/from_scwrl_1806964620_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_517015509.pdb -s /var/tmp/to_scwrl_517015509.seq -o /var/tmp/from_scwrl_517015509.pdb > /var/tmp/scwrl_517015509.log Error: can't open any of /var/tmp/from_scwrl_517015509.pdb or /var/tmp/from_scwrl_517015509_b.pdb or /var/tmp/from_scwrl_517015509_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1756761042.pdb -s /var/tmp/to_scwrl_1756761042.seq -o /var/tmp/from_scwrl_1756761042.pdb > /var/tmp/scwrl_1756761042.log Error: can't open any of /var/tmp/from_scwrl_1756761042.pdb or /var/tmp/from_scwrl_1756761042_b.pdb or /var/tmp/from_scwrl_1756761042_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1290496929.pdb -s /var/tmp/to_scwrl_1290496929.seq -o /var/tmp/from_scwrl_1290496929.pdb > /var/tmp/scwrl_1290496929.log Error: can't open any of /var/tmp/from_scwrl_1290496929.pdb or /var/tmp/from_scwrl_1290496929_b.pdb or /var/tmp/from_scwrl_1290496929_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_238874304.pdb -s /var/tmp/to_scwrl_238874304.seq -o /var/tmp/from_scwrl_238874304.pdb > /var/tmp/scwrl_238874304.log Error: can't open any of /var/tmp/from_scwrl_238874304.pdb or /var/tmp/from_scwrl_238874304_b.pdb or /var/tmp/from_scwrl_238874304_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_54500781.pdb -s /var/tmp/to_scwrl_54500781.seq -o /var/tmp/from_scwrl_54500781.pdb > /var/tmp/scwrl_54500781.log Error: can't open any of /var/tmp/from_scwrl_54500781.pdb or /var/tmp/from_scwrl_54500781_b.pdb or /var/tmp/from_scwrl_54500781_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1121128588.pdb -s /var/tmp/to_scwrl_1121128588.seq -o /var/tmp/from_scwrl_1121128588.pdb > /var/tmp/scwrl_1121128588.log Error: can't open any of /var/tmp/from_scwrl_1121128588.pdb or /var/tmp/from_scwrl_1121128588_b.pdb or /var/tmp/from_scwrl_1121128588_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_87892090.pdb -s /var/tmp/to_scwrl_87892090.seq -o /var/tmp/from_scwrl_87892090.pdb > /var/tmp/scwrl_87892090.log Error: can't open any of /var/tmp/from_scwrl_87892090.pdb or /var/tmp/from_scwrl_87892090_b.pdb or /var/tmp/from_scwrl_87892090_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_683612158.pdb -s /var/tmp/to_scwrl_683612158.seq -o /var/tmp/from_scwrl_683612158.pdb > /var/tmp/scwrl_683612158.log Error: can't open any of /var/tmp/from_scwrl_683612158.pdb or /var/tmp/from_scwrl_683612158_b.pdb or /var/tmp/from_scwrl_683612158_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1339036316.pdb -s /var/tmp/to_scwrl_1339036316.seq -o /var/tmp/from_scwrl_1339036316.pdb > /var/tmp/scwrl_1339036316.log Error: can't open any of /var/tmp/from_scwrl_1339036316.pdb or /var/tmp/from_scwrl_1339036316_b.pdb or /var/tmp/from_scwrl_1339036316_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1103194281.pdb -s /var/tmp/to_scwrl_1103194281.seq -o /var/tmp/from_scwrl_1103194281.pdb > /var/tmp/scwrl_1103194281.log Error: can't open any of /var/tmp/from_scwrl_1103194281.pdb or /var/tmp/from_scwrl_1103194281_b.pdb or /var/tmp/from_scwrl_1103194281_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1340715702.pdb -s /var/tmp/to_scwrl_1340715702.seq -o /var/tmp/from_scwrl_1340715702.pdb > /var/tmp/scwrl_1340715702.log Error: can't open any of /var/tmp/from_scwrl_1340715702.pdb or /var/tmp/from_scwrl_1340715702_b.pdb or /var/tmp/from_scwrl_1340715702_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_331506819.pdb -s /var/tmp/to_scwrl_331506819.seq -o /var/tmp/from_scwrl_331506819.pdb > /var/tmp/scwrl_331506819.log Error: can't open any of /var/tmp/from_scwrl_331506819.pdb or /var/tmp/from_scwrl_331506819_b.pdb or /var/tmp/from_scwrl_331506819_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1946881625.pdb -s /var/tmp/to_scwrl_1946881625.seq -o /var/tmp/from_scwrl_1946881625.pdb > /var/tmp/scwrl_1946881625.log Error: can't open any of /var/tmp/from_scwrl_1946881625.pdb or /var/tmp/from_scwrl_1946881625_b.pdb or /var/tmp/from_scwrl_1946881625_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1385052067.pdb -s /var/tmp/to_scwrl_1385052067.seq -o /var/tmp/from_scwrl_1385052067.pdb > /var/tmp/scwrl_1385052067.log Error: can't open any of /var/tmp/from_scwrl_1385052067.pdb or /var/tmp/from_scwrl_1385052067_b.pdb or /var/tmp/from_scwrl_1385052067_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_149939996.pdb -s /var/tmp/to_scwrl_149939996.seq -o /var/tmp/from_scwrl_149939996.pdb > /var/tmp/scwrl_149939996.log Error: can't open any of /var/tmp/from_scwrl_149939996.pdb or /var/tmp/from_scwrl_149939996_b.pdb or /var/tmp/from_scwrl_149939996_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1055072653.pdb -s /var/tmp/to_scwrl_1055072653.seq -o /var/tmp/from_scwrl_1055072653.pdb > /var/tmp/scwrl_1055072653.log Error: can't open any of /var/tmp/from_scwrl_1055072653.pdb or /var/tmp/from_scwrl_1055072653_b.pdb or /var/tmp/from_scwrl_1055072653_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1265968961.pdb -s /var/tmp/to_scwrl_1265968961.seq -o /var/tmp/from_scwrl_1265968961.pdb > /var/tmp/scwrl_1265968961.log Error: can't open any of /var/tmp/from_scwrl_1265968961.pdb or /var/tmp/from_scwrl_1265968961_b.pdb or /var/tmp/from_scwrl_1265968961_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2022659325.pdb -s /var/tmp/to_scwrl_2022659325.seq -o /var/tmp/from_scwrl_2022659325.pdb > /var/tmp/scwrl_2022659325.log Error: can't open any of /var/tmp/from_scwrl_2022659325.pdb or /var/tmp/from_scwrl_2022659325_b.pdb or /var/tmp/from_scwrl_2022659325_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_355125597.pdb -s /var/tmp/to_scwrl_355125597.seq -o /var/tmp/from_scwrl_355125597.pdb > /var/tmp/scwrl_355125597.log Error: can't open any of /var/tmp/from_scwrl_355125597.pdb or /var/tmp/from_scwrl_355125597_b.pdb or /var/tmp/from_scwrl_355125597_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1803536524.pdb -s /var/tmp/to_scwrl_1803536524.seq -o /var/tmp/from_scwrl_1803536524.pdb > /var/tmp/scwrl_1803536524.log Error: can't open any of /var/tmp/from_scwrl_1803536524.pdb or /var/tmp/from_scwrl_1803536524_b.pdb or /var/tmp/from_scwrl_1803536524_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_658054517.pdb -s /var/tmp/to_scwrl_658054517.seq -o /var/tmp/from_scwrl_658054517.pdb > /var/tmp/scwrl_658054517.log Error: can't open any of /var/tmp/from_scwrl_658054517.pdb or /var/tmp/from_scwrl_658054517_b.pdb or /var/tmp/from_scwrl_658054517_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_899443605.pdb -s /var/tmp/to_scwrl_899443605.seq -o /var/tmp/from_scwrl_899443605.pdb > /var/tmp/scwrl_899443605.log Error: can't open any of /var/tmp/from_scwrl_899443605.pdb or /var/tmp/from_scwrl_899443605_b.pdb or /var/tmp/from_scwrl_899443605_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_837201463.pdb -s /var/tmp/to_scwrl_837201463.seq -o /var/tmp/from_scwrl_837201463.pdb > /var/tmp/scwrl_837201463.log Error: can't open any of /var/tmp/from_scwrl_837201463.pdb or /var/tmp/from_scwrl_837201463_b.pdb or /var/tmp/from_scwrl_837201463_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_340146549.pdb -s /var/tmp/to_scwrl_340146549.seq -o /var/tmp/from_scwrl_340146549.pdb > /var/tmp/scwrl_340146549.log Error: can't open any of /var/tmp/from_scwrl_340146549.pdb or /var/tmp/from_scwrl_340146549_b.pdb or /var/tmp/from_scwrl_340146549_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_383266867.pdb -s /var/tmp/to_scwrl_383266867.seq -o /var/tmp/from_scwrl_383266867.pdb > /var/tmp/scwrl_383266867.log Error: can't open any of /var/tmp/from_scwrl_383266867.pdb or /var/tmp/from_scwrl_383266867_b.pdb or /var/tmp/from_scwrl_383266867_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1636104159.pdb -s /var/tmp/to_scwrl_1636104159.seq -o /var/tmp/from_scwrl_1636104159.pdb > /var/tmp/scwrl_1636104159.log Error: can't open any of /var/tmp/from_scwrl_1636104159.pdb or /var/tmp/from_scwrl_1636104159_b.pdb or /var/tmp/from_scwrl_1636104159_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1472250368.pdb -s /var/tmp/to_scwrl_1472250368.seq -o /var/tmp/from_scwrl_1472250368.pdb > /var/tmp/scwrl_1472250368.log Error: can't open any of /var/tmp/from_scwrl_1472250368.pdb or /var/tmp/from_scwrl_1472250368_b.pdb or /var/tmp/from_scwrl_1472250368_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1278748239.pdb -s /var/tmp/to_scwrl_1278748239.seq -o /var/tmp/from_scwrl_1278748239.pdb > /var/tmp/scwrl_1278748239.log Error: can't open any of /var/tmp/from_scwrl_1278748239.pdb or /var/tmp/from_scwrl_1278748239_b.pdb or /var/tmp/from_scwrl_1278748239_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_898966978.pdb -s /var/tmp/to_scwrl_898966978.seq -o /var/tmp/from_scwrl_898966978.pdb > /var/tmp/scwrl_898966978.log Error: can't open any of /var/tmp/from_scwrl_898966978.pdb or /var/tmp/from_scwrl_898966978_b.pdb or /var/tmp/from_scwrl_898966978_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2061032084.pdb -s /var/tmp/to_scwrl_2061032084.seq -o /var/tmp/from_scwrl_2061032084.pdb > /var/tmp/scwrl_2061032084.log Error: can't open any of /var/tmp/from_scwrl_2061032084.pdb or /var/tmp/from_scwrl_2061032084_b.pdb or /var/tmp/from_scwrl_2061032084_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_938229213.pdb -s /var/tmp/to_scwrl_938229213.seq -o /var/tmp/from_scwrl_938229213.pdb > /var/tmp/scwrl_938229213.log Error: can't open any of /var/tmp/from_scwrl_938229213.pdb or /var/tmp/from_scwrl_938229213_b.pdb or /var/tmp/from_scwrl_938229213_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1415982486.pdb -s /var/tmp/to_scwrl_1415982486.seq -o /var/tmp/from_scwrl_1415982486.pdb > /var/tmp/scwrl_1415982486.log Error: can't open any of /var/tmp/from_scwrl_1415982486.pdb or /var/tmp/from_scwrl_1415982486_b.pdb or /var/tmp/from_scwrl_1415982486_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1670309479.pdb -s /var/tmp/to_scwrl_1670309479.seq -o /var/tmp/from_scwrl_1670309479.pdb > /var/tmp/scwrl_1670309479.log Error: can't open any of /var/tmp/from_scwrl_1670309479.pdb or /var/tmp/from_scwrl_1670309479_b.pdb or /var/tmp/from_scwrl_1670309479_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_81242495.pdb -s /var/tmp/to_scwrl_81242495.seq -o /var/tmp/from_scwrl_81242495.pdb > /var/tmp/scwrl_81242495.log Error: can't open any of /var/tmp/from_scwrl_81242495.pdb or /var/tmp/from_scwrl_81242495_b.pdb or /var/tmp/from_scwrl_81242495_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1654856790.pdb -s /var/tmp/to_scwrl_1654856790.seq -o /var/tmp/from_scwrl_1654856790.pdb > /var/tmp/scwrl_1654856790.log Error: can't open any of /var/tmp/from_scwrl_1654856790.pdb or /var/tmp/from_scwrl_1654856790_b.pdb or /var/tmp/from_scwrl_1654856790_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1724810260.pdb -s /var/tmp/to_scwrl_1724810260.seq -o /var/tmp/from_scwrl_1724810260.pdb > /var/tmp/scwrl_1724810260.log Error: can't open any of /var/tmp/from_scwrl_1724810260.pdb or /var/tmp/from_scwrl_1724810260_b.pdb or /var/tmp/from_scwrl_1724810260_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1202371083.pdb -s /var/tmp/to_scwrl_1202371083.seq -o /var/tmp/from_scwrl_1202371083.pdb > /var/tmp/scwrl_1202371083.log Error: can't open any of /var/tmp/from_scwrl_1202371083.pdb or /var/tmp/from_scwrl_1202371083_b.pdb or /var/tmp/from_scwrl_1202371083_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1742748880.pdb -s /var/tmp/to_scwrl_1742748880.seq -o /var/tmp/from_scwrl_1742748880.pdb > /var/tmp/scwrl_1742748880.log Error: can't open any of /var/tmp/from_scwrl_1742748880.pdb or /var/tmp/from_scwrl_1742748880_b.pdb or /var/tmp/from_scwrl_1742748880_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_260938771.pdb -s /var/tmp/to_scwrl_260938771.seq -o /var/tmp/from_scwrl_260938771.pdb > /var/tmp/scwrl_260938771.log Error: can't open any of /var/tmp/from_scwrl_260938771.pdb or /var/tmp/from_scwrl_260938771_b.pdb or /var/tmp/from_scwrl_260938771_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_393923753.pdb -s /var/tmp/to_scwrl_393923753.seq -o /var/tmp/from_scwrl_393923753.pdb > /var/tmp/scwrl_393923753.log Error: can't open any of /var/tmp/from_scwrl_393923753.pdb or /var/tmp/from_scwrl_393923753_b.pdb or /var/tmp/from_scwrl_393923753_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_698459515.pdb -s /var/tmp/to_scwrl_698459515.seq -o /var/tmp/from_scwrl_698459515.pdb > /var/tmp/scwrl_698459515.log Error: can't open any of /var/tmp/from_scwrl_698459515.pdb or /var/tmp/from_scwrl_698459515_b.pdb or /var/tmp/from_scwrl_698459515_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1601654474.pdb -s /var/tmp/to_scwrl_1601654474.seq -o /var/tmp/from_scwrl_1601654474.pdb > /var/tmp/scwrl_1601654474.log Error: can't open any of /var/tmp/from_scwrl_1601654474.pdb or /var/tmp/from_scwrl_1601654474_b.pdb or /var/tmp/from_scwrl_1601654474_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_725430572.pdb -s /var/tmp/to_scwrl_725430572.seq -o /var/tmp/from_scwrl_725430572.pdb > /var/tmp/scwrl_725430572.log Error: can't open any of /var/tmp/from_scwrl_725430572.pdb or /var/tmp/from_scwrl_725430572_b.pdb or /var/tmp/from_scwrl_725430572_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_497857494.pdb -s /var/tmp/to_scwrl_497857494.seq -o /var/tmp/from_scwrl_497857494.pdb > /var/tmp/scwrl_497857494.log Error: can't open any of /var/tmp/from_scwrl_497857494.pdb or /var/tmp/from_scwrl_497857494_b.pdb or /var/tmp/from_scwrl_497857494_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_839222895.pdb -s /var/tmp/to_scwrl_839222895.seq -o /var/tmp/from_scwrl_839222895.pdb > /var/tmp/scwrl_839222895.log Error: can't open any of /var/tmp/from_scwrl_839222895.pdb or /var/tmp/from_scwrl_839222895_b.pdb or /var/tmp/from_scwrl_839222895_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_875370568.pdb -s /var/tmp/to_scwrl_875370568.seq -o /var/tmp/from_scwrl_875370568.pdb > /var/tmp/scwrl_875370568.log Error: can't open any of /var/tmp/from_scwrl_875370568.pdb or /var/tmp/from_scwrl_875370568_b.pdb or /var/tmp/from_scwrl_875370568_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1552930146.pdb -s /var/tmp/to_scwrl_1552930146.seq -o /var/tmp/from_scwrl_1552930146.pdb > /var/tmp/scwrl_1552930146.log Error: can't open any of /var/tmp/from_scwrl_1552930146.pdb or /var/tmp/from_scwrl_1552930146_b.pdb or /var/tmp/from_scwrl_1552930146_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2105191857.pdb -s /var/tmp/to_scwrl_2105191857.seq -o /var/tmp/from_scwrl_2105191857.pdb > /var/tmp/scwrl_2105191857.log Error: can't open any of /var/tmp/from_scwrl_2105191857.pdb or /var/tmp/from_scwrl_2105191857_b.pdb or /var/tmp/from_scwrl_2105191857_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_750546247.pdb -s /var/tmp/to_scwrl_750546247.seq -o /var/tmp/from_scwrl_750546247.pdb > /var/tmp/scwrl_750546247.log Error: can't open any of /var/tmp/from_scwrl_750546247.pdb or /var/tmp/from_scwrl_750546247_b.pdb or /var/tmp/from_scwrl_750546247_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1908055744.pdb -s /var/tmp/to_scwrl_1908055744.seq -o /var/tmp/from_scwrl_1908055744.pdb > /var/tmp/scwrl_1908055744.log Error: can't open any of /var/tmp/from_scwrl_1908055744.pdb or /var/tmp/from_scwrl_1908055744_b.pdb or /var/tmp/from_scwrl_1908055744_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1761244734.pdb -s /var/tmp/to_scwrl_1761244734.seq -o /var/tmp/from_scwrl_1761244734.pdb > /var/tmp/scwrl_1761244734.log Error: can't open any of /var/tmp/from_scwrl_1761244734.pdb or /var/tmp/from_scwrl_1761244734_b.pdb or /var/tmp/from_scwrl_1761244734_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1408600763.pdb -s /var/tmp/to_scwrl_1408600763.seq -o /var/tmp/from_scwrl_1408600763.pdb > /var/tmp/scwrl_1408600763.log Error: can't open any of /var/tmp/from_scwrl_1408600763.pdb or /var/tmp/from_scwrl_1408600763_b.pdb or /var/tmp/from_scwrl_1408600763_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_660015702.pdb -s /var/tmp/to_scwrl_660015702.seq -o /var/tmp/from_scwrl_660015702.pdb > /var/tmp/scwrl_660015702.log Error: can't open any of /var/tmp/from_scwrl_660015702.pdb or /var/tmp/from_scwrl_660015702_b.pdb or /var/tmp/from_scwrl_660015702_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_450962551.pdb -s /var/tmp/to_scwrl_450962551.seq -o /var/tmp/from_scwrl_450962551.pdb > /var/tmp/scwrl_450962551.log Error: can't open any of /var/tmp/from_scwrl_450962551.pdb or /var/tmp/from_scwrl_450962551_b.pdb or /var/tmp/from_scwrl_450962551_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1748747312.pdb -s /var/tmp/to_scwrl_1748747312.seq -o /var/tmp/from_scwrl_1748747312.pdb > /var/tmp/scwrl_1748747312.log Error: can't open any of /var/tmp/from_scwrl_1748747312.pdb or /var/tmp/from_scwrl_1748747312_b.pdb or /var/tmp/from_scwrl_1748747312_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1043282569.pdb -s /var/tmp/to_scwrl_1043282569.seq -o /var/tmp/from_scwrl_1043282569.pdb > /var/tmp/scwrl_1043282569.log Error: can't open any of /var/tmp/from_scwrl_1043282569.pdb or /var/tmp/from_scwrl_1043282569_b.pdb or /var/tmp/from_scwrl_1043282569_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2087066710.pdb -s /var/tmp/to_scwrl_2087066710.seq -o /var/tmp/from_scwrl_2087066710.pdb > /var/tmp/scwrl_2087066710.log Error: can't open any of /var/tmp/from_scwrl_2087066710.pdb or /var/tmp/from_scwrl_2087066710_b.pdb or /var/tmp/from_scwrl_2087066710_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1073514034.pdb -s /var/tmp/to_scwrl_1073514034.seq -o /var/tmp/from_scwrl_1073514034.pdb > /var/tmp/scwrl_1073514034.log Error: can't open any of /var/tmp/from_scwrl_1073514034.pdb or /var/tmp/from_scwrl_1073514034_b.pdb or /var/tmp/from_scwrl_1073514034_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_174547161.pdb -s /var/tmp/to_scwrl_174547161.seq -o /var/tmp/from_scwrl_174547161.pdb > /var/tmp/scwrl_174547161.log Error: can't open any of /var/tmp/from_scwrl_174547161.pdb or /var/tmp/from_scwrl_174547161_b.pdb or /var/tmp/from_scwrl_174547161_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_838550041.pdb -s /var/tmp/to_scwrl_838550041.seq -o /var/tmp/from_scwrl_838550041.pdb > /var/tmp/scwrl_838550041.log Error: can't open any of /var/tmp/from_scwrl_838550041.pdb or /var/tmp/from_scwrl_838550041_b.pdb or /var/tmp/from_scwrl_838550041_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_987062472.pdb -s /var/tmp/to_scwrl_987062472.seq -o /var/tmp/from_scwrl_987062472.pdb > /var/tmp/scwrl_987062472.log Error: can't open any of /var/tmp/from_scwrl_987062472.pdb or /var/tmp/from_scwrl_987062472_b.pdb or /var/tmp/from_scwrl_987062472_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1112776373.pdb -s /var/tmp/to_scwrl_1112776373.seq -o /var/tmp/from_scwrl_1112776373.pdb > /var/tmp/scwrl_1112776373.log Error: can't open any of /var/tmp/from_scwrl_1112776373.pdb or /var/tmp/from_scwrl_1112776373_b.pdb or /var/tmp/from_scwrl_1112776373_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_107048880.pdb -s /var/tmp/to_scwrl_107048880.seq -o /var/tmp/from_scwrl_107048880.pdb > /var/tmp/scwrl_107048880.log Error: can't open any of /var/tmp/from_scwrl_107048880.pdb or /var/tmp/from_scwrl_107048880_b.pdb or /var/tmp/from_scwrl_107048880_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_509888304.pdb -s /var/tmp/to_scwrl_509888304.seq -o /var/tmp/from_scwrl_509888304.pdb > /var/tmp/scwrl_509888304.log Error: can't open any of /var/tmp/from_scwrl_509888304.pdb or /var/tmp/from_scwrl_509888304_b.pdb or /var/tmp/from_scwrl_509888304_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1194018868.pdb -s /var/tmp/to_scwrl_1194018868.seq -o /var/tmp/from_scwrl_1194018868.pdb > /var/tmp/scwrl_1194018868.log Error: can't open any of /var/tmp/from_scwrl_1194018868.pdb or /var/tmp/from_scwrl_1194018868_b.pdb or /var/tmp/from_scwrl_1194018868_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1761905670.pdb -s /var/tmp/to_scwrl_1761905670.seq -o /var/tmp/from_scwrl_1761905670.pdb > /var/tmp/scwrl_1761905670.log Error: can't open any of /var/tmp/from_scwrl_1761905670.pdb or /var/tmp/from_scwrl_1761905670_b.pdb or /var/tmp/from_scwrl_1761905670_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_87214918.pdb -s /var/tmp/to_scwrl_87214918.seq -o /var/tmp/from_scwrl_87214918.pdb > /var/tmp/scwrl_87214918.log Error: can't open any of /var/tmp/from_scwrl_87214918.pdb or /var/tmp/from_scwrl_87214918_b.pdb or /var/tmp/from_scwrl_87214918_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_248906305.pdb -s /var/tmp/to_scwrl_248906305.seq -o /var/tmp/from_scwrl_248906305.pdb > /var/tmp/scwrl_248906305.log Error: can't open any of /var/tmp/from_scwrl_248906305.pdb or /var/tmp/from_scwrl_248906305_b.pdb or /var/tmp/from_scwrl_248906305_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1357170903.pdb -s /var/tmp/to_scwrl_1357170903.seq -o /var/tmp/from_scwrl_1357170903.pdb > /var/tmp/scwrl_1357170903.log Error: can't open any of /var/tmp/from_scwrl_1357170903.pdb or /var/tmp/from_scwrl_1357170903_b.pdb or /var/tmp/from_scwrl_1357170903_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_348153689.pdb -s /var/tmp/to_scwrl_348153689.seq -o /var/tmp/from_scwrl_348153689.pdb > /var/tmp/scwrl_348153689.log Error: can't open any of /var/tmp/from_scwrl_348153689.pdb or /var/tmp/from_scwrl_348153689_b.pdb or /var/tmp/from_scwrl_348153689_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_642830058.pdb -s /var/tmp/to_scwrl_642830058.seq -o /var/tmp/from_scwrl_642830058.pdb > /var/tmp/scwrl_642830058.log Error: can't open any of /var/tmp/from_scwrl_642830058.pdb or /var/tmp/from_scwrl_642830058_b.pdb or /var/tmp/from_scwrl_642830058_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_2055630418.pdb -s /var/tmp/to_scwrl_2055630418.seq -o /var/tmp/from_scwrl_2055630418.pdb > /var/tmp/scwrl_2055630418.log Error: can't open any of /var/tmp/from_scwrl_2055630418.pdb or /var/tmp/from_scwrl_2055630418_b.pdb or /var/tmp/from_scwrl_2055630418_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1949808163.pdb -s /var/tmp/to_scwrl_1949808163.seq -o /var/tmp/from_scwrl_1949808163.pdb > /var/tmp/scwrl_1949808163.log Error: can't open any of /var/tmp/from_scwrl_1949808163.pdb or /var/tmp/from_scwrl_1949808163_b.pdb or /var/tmp/from_scwrl_1949808163_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1368260629.pdb -s /var/tmp/to_scwrl_1368260629.seq -o /var/tmp/from_scwrl_1368260629.pdb > /var/tmp/scwrl_1368260629.log Error: can't open any of /var/tmp/from_scwrl_1368260629.pdb or /var/tmp/from_scwrl_1368260629_b.pdb or /var/tmp/from_scwrl_1368260629_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_406004265.pdb -s /var/tmp/to_scwrl_406004265.seq -o /var/tmp/from_scwrl_406004265.pdb > /var/tmp/scwrl_406004265.log Error: can't open any of /var/tmp/from_scwrl_406004265.pdb or /var/tmp/from_scwrl_406004265_b.pdb or /var/tmp/from_scwrl_406004265_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_641547412.pdb -s /var/tmp/to_scwrl_641547412.seq -o /var/tmp/from_scwrl_641547412.pdb > /var/tmp/scwrl_641547412.log Error: can't open any of /var/tmp/from_scwrl_641547412.pdb or /var/tmp/from_scwrl_641547412_b.pdb or /var/tmp/from_scwrl_641547412_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_96147551.pdb -s /var/tmp/to_scwrl_96147551.seq -o /var/tmp/from_scwrl_96147551.pdb > /var/tmp/scwrl_96147551.log Error: can't open any of /var/tmp/from_scwrl_96147551.pdb or /var/tmp/from_scwrl_96147551_b.pdb or /var/tmp/from_scwrl_96147551_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1958934412.pdb -s /var/tmp/to_scwrl_1958934412.seq -o /var/tmp/from_scwrl_1958934412.pdb > /var/tmp/scwrl_1958934412.log Error: can't open any of /var/tmp/from_scwrl_1958934412.pdb or /var/tmp/from_scwrl_1958934412_b.pdb or /var/tmp/from_scwrl_1958934412_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_599255622.pdb -s /var/tmp/to_scwrl_599255622.seq -o /var/tmp/from_scwrl_599255622.pdb > /var/tmp/scwrl_599255622.log Error: can't open any of /var/tmp/from_scwrl_599255622.pdb or /var/tmp/from_scwrl_599255622_b.pdb or /var/tmp/from_scwrl_599255622_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_846693798.pdb -s /var/tmp/to_scwrl_846693798.seq -o /var/tmp/from_scwrl_846693798.pdb > /var/tmp/scwrl_846693798.log Error: can't open any of /var/tmp/from_scwrl_846693798.pdb or /var/tmp/from_scwrl_846693798_b.pdb or /var/tmp/from_scwrl_846693798_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1719506509.pdb -s /var/tmp/to_scwrl_1719506509.seq -o /var/tmp/from_scwrl_1719506509.pdb > /var/tmp/scwrl_1719506509.log Error: can't open any of /var/tmp/from_scwrl_1719506509.pdb or /var/tmp/from_scwrl_1719506509_b.pdb or /var/tmp/from_scwrl_1719506509_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_213016709.pdb -s /var/tmp/to_scwrl_213016709.seq -o /var/tmp/from_scwrl_213016709.pdb > /var/tmp/scwrl_213016709.log Error: can't open any of /var/tmp/from_scwrl_213016709.pdb or /var/tmp/from_scwrl_213016709_b.pdb or /var/tmp/from_scwrl_213016709_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_107810914.pdb -s /var/tmp/to_scwrl_107810914.seq -o /var/tmp/from_scwrl_107810914.pdb > /var/tmp/scwrl_107810914.log Error: can't open any of /var/tmp/from_scwrl_107810914.pdb or /var/tmp/from_scwrl_107810914_b.pdb or /var/tmp/from_scwrl_107810914_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_232038564.pdb -s /var/tmp/to_scwrl_232038564.seq -o /var/tmp/from_scwrl_232038564.pdb > /var/tmp/scwrl_232038564.log Error: can't open any of /var/tmp/from_scwrl_232038564.pdb or /var/tmp/from_scwrl_232038564_b.pdb or /var/tmp/from_scwrl_232038564_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_663979260.pdb -s /var/tmp/to_scwrl_663979260.seq -o /var/tmp/from_scwrl_663979260.pdb > /var/tmp/scwrl_663979260.log Error: can't open any of /var/tmp/from_scwrl_663979260.pdb or /var/tmp/from_scwrl_663979260_b.pdb or /var/tmp/from_scwrl_663979260_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1856558227.pdb -s /var/tmp/to_scwrl_1856558227.seq -o /var/tmp/from_scwrl_1856558227.pdb > /var/tmp/scwrl_1856558227.log Error: can't open any of /var/tmp/from_scwrl_1856558227.pdb or /var/tmp/from_scwrl_1856558227_b.pdb or /var/tmp/from_scwrl_1856558227_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1275321132.pdb -s /var/tmp/to_scwrl_1275321132.seq -o /var/tmp/from_scwrl_1275321132.pdb > /var/tmp/scwrl_1275321132.log Error: can't open any of /var/tmp/from_scwrl_1275321132.pdb or /var/tmp/from_scwrl_1275321132_b.pdb or /var/tmp/from_scwrl_1275321132_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_603562323.pdb -s /var/tmp/to_scwrl_603562323.seq -o /var/tmp/from_scwrl_603562323.pdb > /var/tmp/scwrl_603562323.log Error: can't open any of /var/tmp/from_scwrl_603562323.pdb or /var/tmp/from_scwrl_603562323_b.pdb or /var/tmp/from_scwrl_603562323_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_782588614.pdb -s /var/tmp/to_scwrl_782588614.seq -o /var/tmp/from_scwrl_782588614.pdb > /var/tmp/scwrl_782588614.log Error: can't open any of /var/tmp/from_scwrl_782588614.pdb or /var/tmp/from_scwrl_782588614_b.pdb or /var/tmp/from_scwrl_782588614_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1449868293.pdb -s /var/tmp/to_scwrl_1449868293.seq -o /var/tmp/from_scwrl_1449868293.pdb > /var/tmp/scwrl_1449868293.log Error: can't open any of /var/tmp/from_scwrl_1449868293.pdb or /var/tmp/from_scwrl_1449868293_b.pdb or /var/tmp/from_scwrl_1449868293_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1442112363.pdb -s /var/tmp/to_scwrl_1442112363.seq -o /var/tmp/from_scwrl_1442112363.pdb > /var/tmp/scwrl_1442112363.log Error: can't open any of /var/tmp/from_scwrl_1442112363.pdb or /var/tmp/from_scwrl_1442112363_b.pdb or /var/tmp/from_scwrl_1442112363_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1769651085.pdb -s /var/tmp/to_scwrl_1769651085.seq -o /var/tmp/from_scwrl_1769651085.pdb > /var/tmp/scwrl_1769651085.log Error: can't open any of /var/tmp/from_scwrl_1769651085.pdb or /var/tmp/from_scwrl_1769651085_b.pdb or /var/tmp/from_scwrl_1769651085_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_415161020.pdb -s /var/tmp/to_scwrl_415161020.seq -o /var/tmp/from_scwrl_415161020.pdb > /var/tmp/scwrl_415161020.log Error: can't open any of /var/tmp/from_scwrl_415161020.pdb or /var/tmp/from_scwrl_415161020_b.pdb or /var/tmp/from_scwrl_415161020_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1549161243.pdb -s /var/tmp/to_scwrl_1549161243.seq -o /var/tmp/from_scwrl_1549161243.pdb > /var/tmp/scwrl_1549161243.log Error: can't open any of /var/tmp/from_scwrl_1549161243.pdb or /var/tmp/from_scwrl_1549161243_b.pdb or /var/tmp/from_scwrl_1549161243_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_132055743.pdb -s /var/tmp/to_scwrl_132055743.seq -o /var/tmp/from_scwrl_132055743.pdb > /var/tmp/scwrl_132055743.log Error: can't open any of /var/tmp/from_scwrl_132055743.pdb or /var/tmp/from_scwrl_132055743_b.pdb or /var/tmp/from_scwrl_132055743_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1609179888.pdb -s /var/tmp/to_scwrl_1609179888.seq -o /var/tmp/from_scwrl_1609179888.pdb > /var/tmp/scwrl_1609179888.log Error: can't open any of /var/tmp/from_scwrl_1609179888.pdb or /var/tmp/from_scwrl_1609179888_b.pdb or /var/tmp/from_scwrl_1609179888_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1163583266.pdb -s /var/tmp/to_scwrl_1163583266.seq -o /var/tmp/from_scwrl_1163583266.pdb > /var/tmp/scwrl_1163583266.log Error: can't open any of /var/tmp/from_scwrl_1163583266.pdb or /var/tmp/from_scwrl_1163583266_b.pdb or /var/tmp/from_scwrl_1163583266_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_219270661.pdb -s /var/tmp/to_scwrl_219270661.seq -o /var/tmp/from_scwrl_219270661.pdb > /var/tmp/scwrl_219270661.log Error: can't open any of /var/tmp/from_scwrl_219270661.pdb or /var/tmp/from_scwrl_219270661_b.pdb or /var/tmp/from_scwrl_219270661_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1858086193.pdb -s /var/tmp/to_scwrl_1858086193.seq -o /var/tmp/from_scwrl_1858086193.pdb > /var/tmp/scwrl_1858086193.log Error: can't open any of /var/tmp/from_scwrl_1858086193.pdb or /var/tmp/from_scwrl_1858086193_b.pdb or /var/tmp/from_scwrl_1858086193_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_373270523.pdb -s /var/tmp/to_scwrl_373270523.seq -o /var/tmp/from_scwrl_373270523.pdb > /var/tmp/scwrl_373270523.log Error: can't open any of /var/tmp/from_scwrl_373270523.pdb or /var/tmp/from_scwrl_373270523_b.pdb or /var/tmp/from_scwrl_373270523_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_567424350.pdb -s /var/tmp/to_scwrl_567424350.seq -o /var/tmp/from_scwrl_567424350.pdb > /var/tmp/scwrl_567424350.log Error: can't open any of /var/tmp/from_scwrl_567424350.pdb or /var/tmp/from_scwrl_567424350_b.pdb or /var/tmp/from_scwrl_567424350_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_353432604.pdb -s /var/tmp/to_scwrl_353432604.seq -o /var/tmp/from_scwrl_353432604.pdb > /var/tmp/scwrl_353432604.log Error: can't open any of /var/tmp/from_scwrl_353432604.pdb or /var/tmp/from_scwrl_353432604_b.pdb or /var/tmp/from_scwrl_353432604_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_281417295.pdb -s /var/tmp/to_scwrl_281417295.seq -o /var/tmp/from_scwrl_281417295.pdb > /var/tmp/scwrl_281417295.log Error: can't open any of /var/tmp/from_scwrl_281417295.pdb or /var/tmp/from_scwrl_281417295_b.pdb or /var/tmp/from_scwrl_281417295_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_369748867.pdb -s /var/tmp/to_scwrl_369748867.seq -o /var/tmp/from_scwrl_369748867.pdb > /var/tmp/scwrl_369748867.log Error: can't open any of /var/tmp/from_scwrl_369748867.pdb or /var/tmp/from_scwrl_369748867_b.pdb or /var/tmp/from_scwrl_369748867_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1721693233.pdb -s /var/tmp/to_scwrl_1721693233.seq -o /var/tmp/from_scwrl_1721693233.pdb > /var/tmp/scwrl_1721693233.log Error: can't open any of /var/tmp/from_scwrl_1721693233.pdb or /var/tmp/from_scwrl_1721693233_b.pdb or /var/tmp/from_scwrl_1721693233_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_687421560.pdb -s /var/tmp/to_scwrl_687421560.seq -o /var/tmp/from_scwrl_687421560.pdb > /var/tmp/scwrl_687421560.log Error: can't open any of /var/tmp/from_scwrl_687421560.pdb or /var/tmp/from_scwrl_687421560_b.pdb or /var/tmp/from_scwrl_687421560_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1011296279.pdb -s /var/tmp/to_scwrl_1011296279.seq -o /var/tmp/from_scwrl_1011296279.pdb > /var/tmp/scwrl_1011296279.log Error: can't open any of /var/tmp/from_scwrl_1011296279.pdb or /var/tmp/from_scwrl_1011296279_b.pdb or /var/tmp/from_scwrl_1011296279_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1817840784.pdb -s /var/tmp/to_scwrl_1817840784.seq -o /var/tmp/from_scwrl_1817840784.pdb > /var/tmp/scwrl_1817840784.log Error: can't open any of /var/tmp/from_scwrl_1817840784.pdb or /var/tmp/from_scwrl_1817840784_b.pdb or /var/tmp/from_scwrl_1817840784_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_498872325.pdb -s /var/tmp/to_scwrl_498872325.seq -o /var/tmp/from_scwrl_498872325.pdb > /var/tmp/scwrl_498872325.log Error: can't open any of /var/tmp/from_scwrl_498872325.pdb or /var/tmp/from_scwrl_498872325_b.pdb or /var/tmp/from_scwrl_498872325_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1610551900.pdb -s /var/tmp/to_scwrl_1610551900.seq -o /var/tmp/from_scwrl_1610551900.pdb > /var/tmp/scwrl_1610551900.log Error: can't open any of /var/tmp/from_scwrl_1610551900.pdb or /var/tmp/from_scwrl_1610551900_b.pdb or /var/tmp/from_scwrl_1610551900_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_517050935.pdb -s /var/tmp/to_scwrl_517050935.seq -o /var/tmp/from_scwrl_517050935.pdb > /var/tmp/scwrl_517050935.log Error: can't open any of /var/tmp/from_scwrl_517050935.pdb or /var/tmp/from_scwrl_517050935_b.pdb or /var/tmp/from_scwrl_517050935_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_70895187.pdb -s /var/tmp/to_scwrl_70895187.seq -o /var/tmp/from_scwrl_70895187.pdb > /var/tmp/scwrl_70895187.log Error: can't open any of /var/tmp/from_scwrl_70895187.pdb or /var/tmp/from_scwrl_70895187_b.pdb or /var/tmp/from_scwrl_70895187_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_1823568609.pdb -s /var/tmp/to_scwrl_1823568609.seq -o /var/tmp/from_scwrl_1823568609.pdb > /var/tmp/scwrl_1823568609.log Error: can't open any of /var/tmp/from_scwrl_1823568609.pdb or /var/tmp/from_scwrl_1823568609_b.pdb or /var/tmp/from_scwrl_1823568609_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_624861850.pdb -s /var/tmp/to_scwrl_624861850.seq -o /var/tmp/from_scwrl_624861850.pdb > /var/tmp/scwrl_624861850.log Error: can't open any of /var/tmp/from_scwrl_624861850.pdb or /var/tmp/from_scwrl_624861850_b.pdb or /var/tmp/from_scwrl_624861850_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 113 ; scwrl -i /var/tmp/to_scwrl_302933751.pdb -s /var/tmp/to_scwrl_302933751.seq -o /var/tmp/from_scwrl_302933751.pdb > /var/tmp/scwrl_302933751.log Error: can't open any of /var/tmp/from_scwrl_302933751.pdb or /var/tmp/from_scwrl_302933751_b.pdb or /var/tmp/from_scwrl_302933751_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 31.6632 sec, elapsed time= 38.5194 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 391.154 real_cost = 365.798 nFOLD_TS5-scwrl costs 10638.5 real_cost = 414.153 nFOLD_TS4-scwrl costs 6281.3 real_cost = 458.33 nFOLD_TS3-scwrl costs 11316.4 real_cost = 382.552 nFOLD_TS2-scwrl costs 51079.9 real_cost = 441.478 nFOLD_TS1-scwrl costs 9519.8 real_cost = 382.659 mGen-3D_TS1-scwrl costs 9519.8 real_cost = 382.659 keasar-server_TS5-scwrl costs 374.803 real_cost = 340.891 keasar-server_TS4-scwrl costs 378.42 real_cost = 309.819 keasar-server_TS3-scwrl costs 379.459 real_cost = 320.088 keasar-server_TS2-scwrl costs 391.3 real_cost = 371.566 keasar-server_TS1-scwrl costs 385.373 real_cost = 323.856 karypis.srv_TS5-scwrl costs 344.212 real_cost = 368.442 karypis.srv_TS4-scwrl costs 362.506 real_cost = 365.8 karypis.srv_TS3-scwrl costs 304.702 real_cost = 359.8 karypis.srv_TS2-scwrl costs 360.384 real_cost = 372.919 karypis.srv_TS1-scwrl costs 373.471 real_cost = 360.092 karypis.srv.4_TS1-scwrl costs 527.612 real_cost = 355.596 karypis.srv.2_TS5-scwrl costs 413.096 real_cost = 383.657 karypis.srv.2_TS4-scwrl costs 346.607 real_cost = 364.459 karypis.srv.2_TS3-scwrl costs 404.37 real_cost = 376.557 karypis.srv.2_TS2-scwrl costs 346.281 real_cost = 351.213 karypis.srv.2_TS1-scwrl costs 397.603 real_cost = 346.952 forecast-s_AL5-scwrl costs 46788.8 real_cost = 497.519 forecast-s_AL4-scwrl costs 14325.7 real_cost = 456.655 forecast-s_AL3-scwrl costs 34658.7 real_cost = 473.549 forecast-s_AL2-scwrl costs 39874 real_cost = 473.761 forecast-s_AL1-scwrl costs 10367.5 real_cost = 501.782 beautshotbase_TS1-scwrl costs 444.815 real_cost = 357.339 beautshot_TS1-scwrl costs 397.752 real_cost = 342.582 Zhang-Server_TS5-scwrl costs 377.833 real_cost = 324.501 Zhang-Server_TS4-scwrl costs 406.112 real_cost = 320.276 Zhang-Server_TS3-scwrl costs 359.749 real_cost = 318.943 Zhang-Server_TS2-scwrl costs 327.008 real_cost = 317.796 Zhang-Server_TS1-scwrl costs 436.179 real_cost = 330.356 UNI-EID_sfst_AL5-scwrl costs 17748.8 real_cost = 455.603 UNI-EID_sfst_AL4-scwrl costs 24127.9 real_cost = 490.865 UNI-EID_sfst_AL3-scwrl costs 5628.96 real_cost = 498.714 UNI-EID_sfst_AL2-scwrl costs 45731.5 real_cost = 513.372 UNI-EID_sfst_AL1-scwrl costs 4547.8 real_cost = 451.602 UNI-EID_expm_TS1-scwrl costs 2725.86 real_cost = 504.959 UNI-EID_bnmx_TS5-scwrl costs 30455.6 real_cost = 482.962 UNI-EID_bnmx_TS4-scwrl costs 21847.7 real_cost = 440.528 UNI-EID_bnmx_TS3-scwrl costs 5828.94 real_cost = 496.251 UNI-EID_bnmx_TS2-scwrl costs 46301.1 real_cost = 484.994 UNI-EID_bnmx_TS1-scwrl costs 5274.79 real_cost = 447.996 SPARKS2_TS5-scwrl costs 335.825 real_cost = 309.181 SPARKS2_TS4-scwrl costs 331.581 real_cost = 370.738 SPARKS2_TS3-scwrl costs 354.13 real_cost = 353.707 SPARKS2_TS2-scwrl costs 314.971 real_cost = 355.207 SPARKS2_TS1-scwrl costs 337.666 real_cost = 354.632 SP4_TS5-scwrl costs 369.854 real_cost = 366.885 SP4_TS4-scwrl costs 364.01 real_cost = 307.146 SP4_TS3-scwrl costs 369.717 real_cost = 329.671 SP4_TS2-scwrl costs 334.447 real_cost = 361.803 SP4_TS1-scwrl costs 326.994 real_cost = 354.998 SP3_TS5-scwrl costs 313.534 real_cost = 353.713 SP3_TS4-scwrl costs 330.06 real_cost = 330.491 SP3_TS3-scwrl costs 307.561 real_cost = 323.728 SP3_TS2-scwrl costs 331.488 real_cost = 355.55 SP3_TS1-scwrl costs 384.457 real_cost = 352.518 SAM_T06_server_TS5-scwrl costs 446.072 real_cost = 386.341 SAM_T06_server_TS4-scwrl costs 526.053 real_cost = 363.321 SAM_T06_server_TS3-scwrl costs 677.857 real_cost = 447.861 SAM_T06_server_TS2-scwrl costs 822.656 real_cost = 425.131 SAM_T06_server_TS1-scwrl costs 254.733 real_cost = 348.262 SAM-T02_AL5-scwrl costs 72935.1 real_cost = 473.073 SAM-T02_AL4-scwrl costs 3361.18 real_cost = 504.946 SAM-T02_AL3-scwrl costs 3819.53 real_cost = 500.999 SAM-T02_AL2-scwrl costs 8169.34 real_cost = 504.128 SAM-T02_AL1-scwrl costs 29434.6 real_cost = 472.579 ROKKY_TS5-scwrl costs 3855.08 real_cost = 401.218 ROKKY_TS4-scwrl costs 7759.17 real_cost = 410.174 ROKKY_TS3-scwrl costs 10063.8 real_cost = 392.124 ROKKY_TS2-scwrl costs 6122.87 real_cost = 421.961 ROKKY_TS1-scwrl costs 13009.1 real_cost = 404.355 ROBETTA_TS5-scwrl costs 265.055 real_cost = 314.018 ROBETTA_TS4-scwrl costs 262.778 real_cost = 314.783 ROBETTA_TS3-scwrl costs 291.858 real_cost = 315.94 ROBETTA_TS2-scwrl costs 272.072 real_cost = 321.484 ROBETTA_TS1-scwrl costs 279.274 real_cost = 318.054 RAPTOR_TS5-scwrl costs 320.344 real_cost = 325.037 RAPTOR_TS4-scwrl costs 326.829 real_cost = 347.58 RAPTOR_TS3-scwrl costs 371.163 real_cost = 354.523 RAPTOR_TS2-scwrl costs 340.023 real_cost = 350.65 RAPTOR_TS1-scwrl costs 326.339 real_cost = 354.244 RAPTORESS_TS5-scwrl costs 313.285 real_cost = 352.394 RAPTORESS_TS4-scwrl costs 316.484 real_cost = 321.045 RAPTORESS_TS3-scwrl costs 318.881 real_cost = 355.725 RAPTORESS_TS2-scwrl costs 316.468 real_cost = 357.514 RAPTORESS_TS1-scwrl costs 325.052 real_cost = 364.251 RAPTOR-ACE_TS5-scwrl costs 315.554 real_cost = 340.842 RAPTOR-ACE_TS4-scwrl costs 366.505 real_cost = 356.739 RAPTOR-ACE_TS3-scwrl costs 331.488 real_cost = 355.55 RAPTOR-ACE_TS2-scwrl costs 326.171 real_cost = 352.834 RAPTOR-ACE_TS1-scwrl costs 313.534 real_cost = 353.713 Pmodeller6_TS5-scwrl costs 412.472 real_cost = 343.965 Pmodeller6_TS4-scwrl costs 402.745 real_cost = 337.037 Pmodeller6_TS3-scwrl costs 427.606 real_cost = 335.403 Pmodeller6_TS2-scwrl costs 431.547 real_cost = 348.019 Pmodeller6_TS1-scwrl costs 389.385 real_cost = 315.476 Phyre-2_TS5-scwrl costs 986.489 real_cost = 455.752 Phyre-2_TS4-scwrl costs 986.489 real_cost = 455.752 Phyre-2_TS3-scwrl costs 987.932 real_cost = 425.538 Phyre-2_TS2-scwrl costs 457.635 real_cost = 362.831 Phyre-2_TS1-scwrl costs 495.83 real_cost = 369.944 Phyre-1_TS1-scwrl costs 987.529 real_cost = 453.553 Pcons6_TS5-scwrl costs 427.606 real_cost = 335.403 Pcons6_TS4-scwrl costs 400.612 real_cost = 331.004 Pcons6_TS3-scwrl costs 429.497 real_cost = 343.807 Pcons6_TS2-scwrl costs 421.767 real_cost = 346.044 Pcons6_TS1-scwrl costs 402.745 real_cost = 337.037 PROTINFO_TS5-scwrl costs 299.011 real_cost = 302.549 PROTINFO_TS4-scwrl costs 313.114 real_cost = 313.609 PROTINFO_TS3-scwrl costs 302.527 real_cost = 300.345 PROTINFO_TS2-scwrl costs 313.09 real_cost = 326.199 PROTINFO_TS1-scwrl costs 315.655 real_cost = 316.675 PROTINFO-AB_TS5-scwrl costs 332.281 real_cost = 335.73 PROTINFO-AB_TS4-scwrl costs 338.136 real_cost = 325.405 PROTINFO-AB_TS3-scwrl costs 334.221 real_cost = 339.844 PROTINFO-AB_TS2-scwrl costs 339.381 real_cost = 330.924 PROTINFO-AB_TS1-scwrl costs 341.869 real_cost = 334.846 POMYSL_TS5-scwrl costs 398.402 real_cost = 370.796 POMYSL_TS4-scwrl costs 401.478 real_cost = 375.728 POMYSL_TS3-scwrl costs 401.734 real_cost = 385.51 POMYSL_TS2-scwrl costs 404.944 real_cost = 367.625 POMYSL_TS1-scwrl costs 399.587 real_cost = 365.93 NN_PUT_lab_TS1-scwrl costs 384.457 real_cost = 352.518 MetaTasser_TS5-scwrl costs 490.635 real_cost = 339.988 MetaTasser_TS4-scwrl costs 465.031 real_cost = 349.723 MetaTasser_TS3-scwrl costs 503.916 real_cost = 348.145 MetaTasser_TS2-scwrl costs 498.61 real_cost = 346.571 MetaTasser_TS1-scwrl costs 511.715 real_cost = 337.447 Ma-OPUS-server_TS5-scwrl costs 364.792 real_cost = 365.866 Ma-OPUS-server_TS4-scwrl costs 353.801 real_cost = 345.065 Ma-OPUS-server_TS3-scwrl costs 350.818 real_cost = 350.519 Ma-OPUS-server_TS2-scwrl costs 341.517 real_cost = 321.185 Ma-OPUS-server_TS1-scwrl costs 346.918 real_cost = 357.802 MIG_FROST_FLEX_AL1-scwrl costs 4364.3 real_cost = 490.091 LOOPP_TS5-scwrl costs 439.545 real_cost = 356.711 LOOPP_TS4-scwrl costs 506.097 real_cost = 383.205 LOOPP_TS3-scwrl costs 450.826 real_cost = 380.628 LOOPP_TS2-scwrl costs 386.123 real_cost = 347.566 LOOPP_TS1-scwrl costs 458.435 real_cost = 361.686 Huber-Torda-Server_TS5-scwrl costs 12810.6 real_cost = 408.919 Huber-Torda-Server_TS4-scwrl costs 20886.2 real_cost = 471.048 Huber-Torda-Server_TS3-scwrl costs 218884 real_cost = 486.249 Huber-Torda-Server_TS2-scwrl costs 17000.3 real_cost = 458.762 Huber-Torda-Server_TS1-scwrl costs 18233 real_cost = 487.512 HHpred3_TS1-scwrl costs 428.428 real_cost = 392.764 HHpred2_TS1-scwrl costs 462.532 real_cost = 390.943 HHpred1_TS1-scwrl costs 462.532 real_cost = 390.943 GeneSilicoMetaServer_TS5-scwrl costs 468.015 real_cost = 424.086 GeneSilicoMetaServer_TS4-scwrl costs 374.653 real_cost = 327.349 GeneSilicoMetaServer_TS3-scwrl costs 416.691 real_cost = 335.354 GeneSilicoMetaServer_TS2-scwrl costs 312.262 real_cost = 309.119 GeneSilicoMetaServer_TS1-scwrl costs 404.757 real_cost = 362.29 FUNCTION_TS5-scwrl costs 405.695 real_cost = 334.342 FUNCTION_TS4-scwrl costs 390.089 real_cost = 306.536 FUNCTION_TS3-scwrl costs 369.311 real_cost = 312.365 FUNCTION_TS2-scwrl costs 383.074 real_cost = 342.904 FUNCTION_TS1-scwrl costs 380.426 real_cost = 343.99 FUGUE_AL5-scwrl costs 14829.5 real_cost = 457.22 FUGUE_AL4-scwrl costs 20370.7 real_cost = 476.285 FUGUE_AL2-scwrl costs 3848.63 real_cost = 459.576 FUGUE_AL1-scwrl costs 55708 real_cost = 450.321 FUGMOD_TS5-scwrl costs 325.445 real_cost = 342.464 FUGMOD_TS4-scwrl costs 328.846 real_cost = 369.673 FUGMOD_TS3-scwrl costs 343.512 real_cost = 345.318 FUGMOD_TS2-scwrl costs 778.32 real_cost = 423.415 FUGMOD_TS1-scwrl costs 402.199 real_cost = 323.333 FPSOLVER-SERVER_TS1-scwrl costs 360.394 real_cost = 336.611 FORTE2_AL5-scwrl costs 330785 real_cost = 452.893 FORTE2_AL4-scwrl costs 266300 real_cost = 472.968 FORTE2_AL3-scwrl costs 127741 real_cost = 416.128 FORTE2_AL2-scwrl costs 121425 real_cost = 474.044 FORTE2_AL1-scwrl costs 60116.7 real_cost = 457.753 FORTE1_AL5-scwrl costs 266300 real_cost = 472.968 FORTE1_AL4-scwrl costs 127741 real_cost = 416.128 FORTE1_AL3-scwrl costs 71630.5 real_cost = 460.751 FORTE1_AL2-scwrl costs 121425 real_cost = 474.044 FORTE1_AL1-scwrl costs 60116.7 real_cost = 457.753 FOLDpro_TS5-scwrl costs 333.364 real_cost = 328.798 FOLDpro_TS4-scwrl costs 337.93 real_cost = 358.009 FOLDpro_TS3-scwrl costs 363.211 real_cost = 360.997 FOLDpro_TS2-scwrl costs 334.216 real_cost = 357.146 FOLDpro_TS1-scwrl costs 351.244 real_cost = 339.73 FAMS_TS5-scwrl costs 405.695 real_cost = 334.342 FAMS_TS4-scwrl costs 390.089 real_cost = 306.536 FAMS_TS3-scwrl costs 369.311 real_cost = 312.365 FAMS_TS2-scwrl costs 383.074 real_cost = 342.904 FAMS_TS1-scwrl costs 380.426 real_cost = 343.99 FAMSD_TS5-scwrl costs 737.283 real_cost = 403.733 FAMSD_TS4-scwrl costs 364.921 real_cost = 325.66 FAMSD_TS3-scwrl costs 391.666 real_cost = 343.309 FAMSD_TS2-scwrl costs 408.763 real_cost = 349.912 FAMSD_TS1-scwrl costs 410.2 real_cost = 330.845 Distill_TS5-scwrl costs 2127.06 real_cost = 427.968 Distill_TS4-scwrl costs 2132.8 real_cost = 429.787 Distill_TS3-scwrl costs 2120.91 real_cost = 418.346 Distill_TS2-scwrl costs 2123.02 real_cost = 430.201 Distill_TS1-scwrl costs 2125.04 real_cost = 425.57 CaspIta-FOX_TS5-scwrl costs 470.452 real_cost = 367.434 CaspIta-FOX_TS4-scwrl costs 650.021 real_cost = 414.215 CaspIta-FOX_TS3-scwrl costs 528.098 real_cost = 310.964 CaspIta-FOX_TS2-scwrl costs 594.932 real_cost = 390.508 CaspIta-FOX_TS1-scwrl costs 461.663 real_cost = 326.589 CIRCLE_TS5-scwrl costs 352.7 real_cost = 321.248 CIRCLE_TS4-scwrl costs 360.6 real_cost = 341.282 CIRCLE_TS3-scwrl costs 367.082 real_cost = 348.816 CIRCLE_TS2-scwrl costs 347.969 real_cost = 284.347 CIRCLE_TS1-scwrl costs 364.599 real_cost = 318.559 Bilab-ENABLE_TS5-scwrl costs 338.562 real_cost = 320.941 Bilab-ENABLE_TS4-scwrl costs 338.714 real_cost = 319.707 Bilab-ENABLE_TS3-scwrl costs 311.876 real_cost = 349.118 Bilab-ENABLE_TS2-scwrl costs 347.761 real_cost = 337.9 Bilab-ENABLE_TS1-scwrl costs 334.393 real_cost = 329.766 BayesHH_TS1-scwrl costs 375.674 real_cost = 356.343 ABIpro_TS5-scwrl costs 345.273 real_cost = 298.225 ABIpro_TS4-scwrl costs 392.403 real_cost = 327.914 ABIpro_TS3-scwrl costs 344.988 real_cost = 320.481 ABIpro_TS2-scwrl costs 386.7 real_cost = 305.481 ABIpro_TS1-scwrl costs 352.389 real_cost = 331.548 3Dpro_TS5-scwrl costs 371.484 real_cost = 362.357 3Dpro_TS4-scwrl costs 378.59 real_cost = 333.566 3Dpro_TS3-scwrl costs 340.977 real_cost = 363.504 3Dpro_TS2-scwrl costs 357.066 real_cost = 365.381 3Dpro_TS1-scwrl costs 357.085 real_cost = 340.33 3D-JIGSAW_TS5-scwrl costs 407.708 real_cost = 330.601 3D-JIGSAW_TS4-scwrl costs 453.798 real_cost = 342.194 3D-JIGSAW_TS3-scwrl costs 540.213 real_cost = 401.729 3D-JIGSAW_TS2-scwrl costs 436.382 real_cost = 340.047 3D-JIGSAW_TS1-scwrl costs 577.555 real_cost = 375.843 3D-JIGSAW_RECOM_TS5-scwrl costs 444.267 real_cost = 353.576 3D-JIGSAW_RECOM_TS4-scwrl costs 443.948 real_cost = 335.253 3D-JIGSAW_RECOM_TS3-scwrl costs 521.285 real_cost = 347.281 3D-JIGSAW_RECOM_TS2-scwrl costs 521.941 real_cost = 347.277 3D-JIGSAW_RECOM_TS1-scwrl costs 436.519 real_cost = 320.446 3D-JIGSAW_POPULUS_TS5-scwrl costs 353.331 real_cost = 308.547 3D-JIGSAW_POPULUS_TS4-scwrl costs 361.364 real_cost = 321.167 3D-JIGSAW_POPULUS_TS3-scwrl costs 372.152 real_cost = 336.986 3D-JIGSAW_POPULUS_TS2-scwrl costs 355.275 real_cost = 333.706 3D-JIGSAW_POPULUS_TS1-scwrl costs 412.034 real_cost = 297.697 T0285.try9-opt2.repack-nonPC.pdb.gz costs 244.015 real_cost = 311.048 T0285.try9-opt2.pdb.gz costs 239.429 real_cost = 307.956 T0285.try9-opt1.pdb.gz costs 240.904 real_cost = 309.891 T0285.try9-opt1-scwrl.pdb.gz costs 257.692 real_cost = 309.36 T0285.try8-opt2.repack-nonPC.pdb.gz costs 244.631 real_cost = 313.239 T0285.try8-opt2.pdb.gz costs 241.015 real_cost = 309.992 T0285.try8-opt2.gromacs0.pdb.gz costs 251.585 real_cost = 308.502 T0285.try8-opt1.pdb.gz costs 249.717 real_cost = 308.287 T0285.try8-opt1-scwrl.pdb.gz costs 260.763 real_cost = 308.478 T0285.try7-opt2.repack-nonPC.pdb.gz costs 251.391 real_cost = 336.668 T0285.try7-opt2.pdb.gz costs 247.372 real_cost = 336.685 T0285.try7-opt2.gromacs0.pdb.gz costs 275.068 real_cost = 334.793 T0285.try7-opt1.pdb.gz costs 259.931 real_cost = 335.015 T0285.try7-opt1-scwrl.pdb.gz costs 267.942 real_cost = 334.896 T0285.try6-opt2.repack-nonPC.pdb.gz costs 244.211 real_cost = 349.129 T0285.try6-opt2.pdb.gz costs 241.582 real_cost = 348.996 T0285.try6-opt2.gromacs0.pdb.gz costs 272.003 real_cost = 348.309 T0285.try6-opt1.pdb.gz costs 247.879 real_cost = 349.278 T0285.try6-opt1-scwrl.pdb.gz costs 255.305 real_cost = 349.325 T0285.try5-opt2.repack-nonPC.pdb.gz costs 256.884 real_cost = 343.794 T0285.try5-opt2.pdb.gz costs 255.47 real_cost = 343.975 T0285.try5-opt2.gromacs0.pdb.gz costs 277.694 real_cost = 343.02 T0285.try5-opt1.pdb.gz costs 268.363 real_cost = 342.608 T0285.try5-opt1-scwrl.pdb.gz costs 273.234 real_cost = 342.69 T0285.try4-opt2.repack-nonPC.pdb.gz costs 261.463 real_cost = 328.826 T0285.try4-opt2.pdb.gz costs 257.329 real_cost = 325.847 T0285.try4-opt2.gromacs0.pdb.gz costs 285.032 real_cost = 324.576 T0285.try4-opt1.pdb.gz costs 266.904 real_cost = 326.94 T0285.try4-opt1-scwrl.pdb.gz costs 273.518 real_cost = 327.029 T0285.try3-opt2.repack-nonPC.pdb.gz costs 257.535 real_cost = 333.347 T0285.try3-opt2.pdb.gz costs 254.079 real_cost = 330.215 T0285.try3-opt2.gromacs0.pdb.gz costs 284.708 real_cost = 330.169 T0285.try3-opt1.pdb.gz costs 266.696 real_cost = 330.355 T0285.try3-opt1-scwrl.pdb.gz costs 272.335 real_cost = 330.275 T0285.try22-opt2.repack-nonPC.pdb.gz costs 276.985 real_cost = 326.17 T0285.try22-opt2.pdb.gz costs 273.822 real_cost = 327.523 T0285.try22-opt2.gromacs0.pdb.gz costs 290.216 real_cost = 327.728 T0285.try22-opt1.pdb.gz costs 281.255 real_cost = 327.393 T0285.try22-opt1-scwrl.pdb.gz costs 284.09 real_cost = 326.475 T0285.try21-opt2.repack-nonPC.pdb.gz costs 267.123 real_cost = 322.949 T0285.try21-opt2.pdb.gz costs 263.372 real_cost = 322.99 T0285.try21-opt2.gromacs0.pdb.gz costs 286.8 real_cost = 323.611 T0285.try21-opt1.pdb.gz costs 276.416 real_cost = 323.7 T0285.try21-opt1-scwrl.pdb.gz costs 278.769 real_cost = 323.829 T0285.try20-opt2.repack-nonPC.pdb.gz costs 291.915 real_cost = 326.518 T0285.try20-opt2.pdb.gz costs 288.747 real_cost = 326.262 T0285.try20-opt2.gromacs0.pdb.gz costs 332.109 real_cost = 332.461 T0285.try20-opt1.pdb.gz costs 300.754 real_cost = 331.841 T0285.try20-opt1-scwrl.pdb.gz costs 305.345 real_cost = 331.311 T0285.try2-opt2.repack-nonPC.pdb.gz costs 256.718 real_cost = 330.757 T0285.try2-opt2.pdb.gz costs 254.686 real_cost = 331.256 T0285.try2-opt2.gromacs0.pdb.gz costs 270.79 real_cost = 332.63 T0285.try2-opt1.pdb.gz costs 264.635 real_cost = 331.945 T0285.try2-opt1-scwrl.pdb.gz costs 269.055 real_cost = 331.806 T0285.try19-opt2.repack-nonPC.pdb.gz costs 259.009 real_cost = 336.862 T0285.try19-opt2.pdb.gz costs 252.711 real_cost = 338.785 T0285.try19-opt2.gromacs0.pdb.gz costs 269.439 real_cost = 340.035 T0285.try19-opt1.pdb.gz costs 255.747 real_cost = 340.812 T0285.try19-opt1-scwrl.pdb.gz costs 263.687 real_cost = 339.006 T0285.try18-opt2.repack-nonPC.pdb.gz costs 262.128 real_cost = 336.986 T0285.try18-opt2.pdb.gz costs 270.089 real_cost = 310.209 T0285.try18-opt2.gromacs0.pdb.gz costs 284.047 real_cost = 304.565 T0285.try18-opt1.pdb.gz costs 282.838 real_cost = 309.482 T0285.try18-opt1-scwrl.pdb.gz costs 284.611 real_cost = 309.35 T0285.try17-opt2.repack-nonPC.pdb.gz costs 269.972 real_cost = 321.098 T0285.try17-opt2.pdb.gz costs 267.516 real_cost = 321.619 T0285.try17-opt2.gromacs0.pdb.gz costs 287.655 real_cost = 321.998 T0285.try17-opt1.pdb.gz costs 283.093 real_cost = 322.694 T0285.try17-opt1-scwrl.pdb.gz costs 283.981 real_cost = 322.022 T0285.try16-opt2.repack-nonPC.pdb.gz costs 250.819 real_cost = 343.171 T0285.try16-opt2.pdb.gz costs 248.129 real_cost = 342.641 T0285.try16-opt2.gromacs0.pdb.gz costs 260.521 real_cost = 341.067 T0285.try16-opt1.pdb.gz costs 260.939 real_cost = 342.678 T0285.try16-opt1-scwrl.pdb.gz costs 260.734 real_cost = 342.324 T0285.try15-opt2.repack-nonPC.pdb.gz costs 256.031 real_cost = 339.87 T0285.try15-opt2.pdb.gz costs 252.11 real_cost = 340.099 T0285.try15-opt2.gromacs0.pdb.gz costs 276.656 real_cost = 338.619 T0285.try15-opt1.pdb.gz costs 262.613 real_cost = 341.558 T0285.try15-opt1-scwrl.pdb.gz costs 264.121 real_cost = 341.646 T0285.try14-opt2.repack-nonPC.pdb.gz costs 252.154 real_cost = 338.544 T0285.try14-opt2.pdb.gz costs 248.947 real_cost = 338.735 T0285.try14-opt2.gromacs0.pdb.gz costs 269.729 real_cost = 342.193 T0285.try14-opt1.pdb.gz costs 263.374 real_cost = 341.526 T0285.try14-opt1-scwrl.pdb.gz costs 263.664 real_cost = 341.39 T0285.try13-opt2.repack-nonPC.pdb.gz costs 289.653 real_cost = 357.033 T0285.try13-opt2.pdb.gz costs 287.161 real_cost = 357.174 T0285.try13-opt2.gromacs0.pdb.gz costs 303.84 real_cost = 357.624 T0285.try13-opt1.pdb.gz costs 298.323 real_cost = 357.371 T0285.try13-opt1-scwrl.pdb.gz costs 299.954 real_cost = 357.518 T0285.try12-opt2.repack-nonPC.pdb.gz costs 280.1 real_cost = 357.158 T0285.try12-opt2.pdb.gz costs 276.839 real_cost = 350.593 T0285.try12-opt2.gromacs0.pdb.gz costs 295.487 real_cost = 350.206 T0285.try12-opt1.pdb.gz costs 287.938 real_cost = 350.046 T0285.try12-opt1-scwrl.pdb.gz costs 287.801 real_cost = 349.872 T0285.try11-opt1.pdb.gz costs 285.64 real_cost = 323.688 T0285.try11-opt1-scwrl.pdb.gz costs 287.913 real_cost = 330.439 T0285.try10-opt2.repack-nonPC.pdb.gz costs 252.624 real_cost = 343.246 T0285.try10-opt2.pdb.gz costs 250.403 real_cost = 343.154 T0285.try10-opt2.gromacs0.pdb.gz costs 275.527 real_cost = 343.043 T0285.try10-opt1.pdb.gz costs 265.717 real_cost = 344.229 T0285.try10-opt1-scwrl.pdb.gz costs 267.332 real_cost = 344.3 T0285.try1-opt2.repack-nonPC.pdb.gz costs 258.821 real_cost = 332.182 T0285.try1-opt2.pdb.gz costs 254.582 real_cost = 332.03 T0285.try1-opt2.gromacs0.repack-nonPC.pdb.gz costs 278.306 real_cost = 334.647 T0285.try1-opt2.gromacs0.pdb.gz costs 275.166 real_cost = 335.294 T0285.try1-opt1.pdb.gz costs 267.82 real_cost = 331.94 T0285.try1-opt1-scwrl.pdb.gz costs 271.51 real_cost = 331.712 ../model5.ts-submitted costs 252.664 real_cost = 338.79 ../model4.ts-submitted costs 248.18 real_cost = 336.906 ../model3.ts-submitted costs 241.464 real_cost = 349.064 ../model2.ts-submitted costs 254.579 real_cost = 332.012 ../model1.ts-submitted costs 248.133 real_cost = 342.003 align5 costs 1007.36 real_cost = 419.737 align4 costs 750.538 real_cost = 403.705 align3 costs 618.583 real_cost = 386.405 align2 costs 885.136 real_cost = 437.113 align1 costs 1259.85 real_cost = 426.488 T0285.try1-opt2.pdb costs 254.582 real_cost = 332.244 model5-scwrl costs 252.664 real_cost = 338.79 model4-scwrl costs 248.18 real_cost = 336.906 model3-scwrl costs 241.464 real_cost = 349.064 model2-scwrl costs 254.579 real_cost = 332.012 model1-scwrl costs 248.133 real_cost = 342.003 T0285 costs 438.796 real_cost = -895 # command:CPU_time= 190.87 sec, elapsed time= 224.8 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty