# List of top-scoring protein chains for T0285.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2lao 238 1.98e+00 1lst c.94.1.1 35758 1lst 239 1.98e+00 1lst c.94.1.1 35755 1xd3A 230 2.39e+00 1gawA 314 2.97e+00 1fnc b.43.4.2,c.25.1.1 25643,31533 1t8cA 143 3.75e+00 1qfzA 308 4.27e+00 1fnc b.43.4.2,c.25.1.1 25633,31523 1qg0A 308 4.27e+00 1fnc b.43.4.2,c.25.1.1 25639,31529 1qgaA 308 4.27e+00 1fnc b.43.4.2,c.25.1.1 25637,31527 1o0sA 605 5.10e+00 c.2.1.7,c.58.1.3 86540,86541 2a59A 159 6.72e+00 1kyyA 159 6.98e+00 c.16.1.1 73307 1kz4A 159 7.05e+00 c.16.1.1 73323 1kz9A 159 7.15e+00 c.16.1.1 73339 1fjrA 195 7.21e+00 1fjrA b.102.1.1 59855 1kz6A 159 7.22e+00 c.16.1.1 73328 1kz1A 159 7.92e+00 c.16.1.1 73318 1ly1A 181 9.09e+00 c.37.1.1 74334 1ywnA 316 9.52e+00 1sv6A 269 9.70e+00 d.177.1.1 106043 1sm4A 296 9.90e+00 b.43.4.2,c.25.1.1 98913,98914 1wuzA 103 1.27e+01 1c41A 200 1.30e+01 1di0A c.16.1.1 30962 1frqA 314 1.31e+01 1fnc b.43.4.2,c.25.1.1 25632,31522 1bx0A 314 1.31e+01 1fnc b.43.4.2,c.25.1.1 25630,31520 1bx1A 314 1.31e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1fnd 314 1.34e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1frn 314 1.36e+01 1fnc b.43.4.2,c.25.1.1 25631,31521 1fsu 492 1.46e+01 1auk c.76.1.2 35032 2etlA 228 1.57e+01 1ivtA 122 1.59e+01 b.1.16.1 71443 1gr1A 303 1.60e+01 b.43.4.2,c.25.1.1 76319,76320 1ifrA 121 1.61e+01 b.1.16.1 71203 1bawA 105 1.64e+01 1plc b.6.1.1 22868 1ltqA 301 1.65e+01 c.108.1.9,c.37.1.1 78208,78209 1k0eA 453 1.72e+01 d.161.1.1 67938 1bqeA 295 1.73e+01 b.43.4.2,c.25.1.1 64760,64761 1vr2A 316 1.74e+01 1fgkA d.144.1.7 41701 2bsaA 303 1.84e+01 1qgyA 295 1.86e+01 b.43.4.2,c.25.1.1 96344,96345 1bjk 295 1.86e+01 1fnc b.43.4.2,c.25.1.1 25649,31539 1h85A 295 1.87e+01 b.43.4.2,c.25.1.1 65716,65717 1go2A 304 1.88e+01 b.43.4.2,c.25.1.1 76243,76244 1w35A 304 1.88e+01 1w34A 304 1.88e+01 1quf 304 1.88e+01 1fnc b.43.4.2,c.25.1.1 25650,31540 1que 303 1.88e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1gjrA 304 1.88e+01 b.43.4.2,c.25.1.1 70197,70198 1b2rA 304 1.88e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 1ogjA 303 1.88e+01 b.43.4.2,c.25.1.1 92916,92917 1e62A 304 1.88e+01 1fnc b.43.4.2,c.25.1.1 59285,59286 1e63A 304 1.88e+01 1fnc b.43.4.2,c.25.1.1 59287,59288 1e64A 304 1.89e+01 1fnc b.43.4.2,c.25.1.1 59289,59290 1qgzA 295 1.91e+01 b.43.4.2,c.25.1.1 68889,68890 1yzfA 195 1.94e+01 1qh0A 295 1.97e+01 b.43.4.2,c.25.1.1 68891,68892 1yb4A 295 1.99e+01 1ewyA 303 2.04e+01 1fnc b.43.4.2,c.25.1.1 25651,31541 1iq3A 110 2.06e+01 1iq3A a.39.1.6 62640 1b65A 375 2.25e+01 1b65A d.154.1.1 42020 1bdb 277 2.52e+01 1bdb c.2.1.2 29874 1rlw 126 2.74e+01 1rlw b.7.1.1 23177 1bdg 451 2.78e+01 1qhaA c.55.1.3,c.55.1.3 33461,33462 1bci 138 2.94e+01 1rlw b.7.1.1 23180 1vj2A 126 2.97e+01 b.82.1.10 100796 1rflA 172 3.08e+01 c.37.1.8 97384 1zrtE 191 3.18e+01 1i4sA 147 3.31e+01 a.149.1.1 66026 1gdvA 85 3.38e+01 1ctj a.3.1.1 60458 1pms 136 3.39e+01 1awe b.55.1.1 26966 1jfzA 154 3.46e+01 a.149.1.1 66655 1adwA 123 3.54e+01 1bqk b.6.1.1 22893 1fdr 248 3.56e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1j9lA 247 3.78e+01 c.106.1.1 62762 2eboA 74 3.82e+01 2eboA h.3.2.1 45754 3sil 379 3.94e+01 3sil b.68.1.1 27542 2sil 381 3.95e+01 3sil b.68.1.1 27543 2f1rA 171 4.03e+01 1y6bA 366 4.32e+01 1ufgA 151 4.33e+01 b.1.16.1 107814 1rc7A 220 4.49e+01 a.149.1.1,d.50.1.1 97289,97290 1yyoA 221 4.49e+01 1sgfG 237 4.51e+01 5ptp b.47.1.2 26309 1yrqH 549 4.59e+01 1yqwQ 549 4.63e+01 2ez6A 221 4.66e+01 1yykA 221 4.66e+01 1ex7A 186 4.72e+01 1gky c.37.1.1 59537 1gky 187 4.73e+01 1gky c.37.1.1 31839 2f2eA 146 4.76e+01 2bkuA 177 4.80e+01 2b5oA 402 4.94e+01 1odfA 290 4.95e+01 c.37.1.6 92782 1x4aA 109 4.97e+01 1wa5A 176 4.98e+01 1nh2C 79 5.02e+01 b.56.1.1 91875 1yz9A 221 5.18e+01 1frfL 564 5.29e+01 1h2rL e.18.1.1 43300 1tzvA 142 5.33e+01 a.79.1.1 107526 1mwwA 128 5.50e+01 d.80.1.4 91483 1vpqA 273 5.59e+01 1wmsA 177 5.73e+01 c.37.1.8 109414 1s8fA 177 5.76e+01 c.37.1.8 105370 1eboA 131 5.90e+01 2eboA h.3.2.1 45757 1x6iA 91 6.13e+01 1jxcA 68 6.21e+01 g.3.7.5 77201 1ocxA 182 6.59e+01 b.81.1.3 86814 1qorA 327 6.61e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1vf5B 160 6.67e+01 f.32.1.1 100579 1i19A 561 6.69e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1yzlA 179 6.71e+01 1hlm 159 6.91e+01 1hlb a.1.1.2 15626 1eif 135 6.94e+01 1bkb b.34.5.2,b.40.4.5 24608,25340 2eifA 136 6.97e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1mrzA 293 6.99e+01 b.43.5.1,c.26.1.3 91452,91453 1rtfB 252 7.16e+01 5ptp 1x5uA 105 7.40e+01 1bdaA 265 7.44e+01 5ptp b.47.1.2 26329 1dxlA 470 7.64e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30585,30586,40214 1xygA 359 7.79e+01 1d8hA 311 7.84e+01 1d8iA d.63.1.1 39544 1dboA 506 7.90e+01 1dbgA b.80.1.4 28034 1fuiA 591 7.93e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 2ce7A 476 8.07e+01 2ajaA 376 8.12e+01 1oflA 481 8.23e+01 b.80.1.4 103934 1cgn 127 8.27e+01 1bbhA a.24.3.2 16548 1o59A 355 8.36e+01 b.18.1.22,b.18.1.22 92495,92496 1sg3A 349 8.65e+01 b.18.1.22,b.18.1.22 98847,98848 2b9wA 424 8.74e+01 1z8fA 228 9.00e+01