# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gky 187 1.90e+00 1gky c.37.1.1 31839 1ex7A 186 2.03e+00 1gky c.37.1.1 59537 1fjrA 195 2.56e+00 1fjrA b.102.1.1 59855 1uch 230 3.20e+00 1uch d.3.1.6 37129 1ifrA 121 3.21e+00 b.1.16.1 71203 1cjxA 357 3.47e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 1xd3A 230 3.50e+00 1i4sA 147 4.96e+00 a.149.1.1 66026 1mrzA 293 5.62e+00 b.43.5.1,c.26.1.3 91452,91453 1o0sA 605 6.68e+00 c.2.1.7,c.58.1.3 86540,86541 1jfzA 154 8.26e+00 a.149.1.1 66655 1fdr 248 9.72e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 2ez6A 221 1.05e+01 1bb9 115 1.10e+01 1bb9 b.34.2.1 24554 1ltqA 301 1.21e+01 c.108.1.9,c.37.1.1 78208,78209 1y8oB 128 1.33e+01 2f2eA 146 1.34e+01 1ly1A 181 1.51e+01 c.37.1.1 74334 1o59A 355 1.58e+01 b.18.1.22,b.18.1.22 92495,92496 1aokB 122 1.70e+01 1poa a.133.1.2 19561 1vj2A 126 1.92e+01 b.82.1.10 100796 1sr4B 261 1.95e+01 d.151.1.1 105949 1fsu 492 2.06e+01 1auk c.76.1.2 35032 1wmsA 177 2.08e+01 c.37.1.8 109414 1b65A 375 2.21e+01 1b65A d.154.1.1 42020 1xtlA 175 2.23e+01 2eboA 74 2.25e+01 2eboA h.3.2.1 45754 1x6iA 91 2.42e+01 1jltB 122 2.43e+01 a.133.1.2 66868 1ywnA 316 2.44e+01 1s4iA 175 2.44e+01 1ycdA 243 2.56e+01 1s8fA 177 2.76e+01 c.37.1.8 105370 1bawA 105 2.85e+01 1plc b.6.1.1 22868 1f06A 320 2.86e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1xfrA 128 2.88e+01 1xtmA 175 2.94e+01 3dapA 320 2.96e+01 1dapA c.2.1.3,d.81.1.3 30051,39966 1xo7A 166 2.99e+01 1fxoA 293 3.02e+01 1g0rA c.68.1.6 34524 1dapA 320 3.03e+01 1dapA c.2.1.3,d.81.1.3 30053,39968 2a90A 240 3.15e+01 1pms 136 3.41e+01 1awe b.55.1.1 26966 1g0rA 293 3.42e+01 1g0rA c.68.1.6 34532 1d8iA 311 3.46e+01 1d8iA d.63.1.1 39541 1jxcA 68 3.48e+01 g.3.7.5 77201 1rlw 126 3.48e+01 1rlw b.7.1.1 23177 1soxA 466 3.53e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 2a9dA 372 3.54e+01 1qxrA 189 3.76e+01 b.82.1.7 96552 1x9gA 200 3.77e+01 c.33.1.3 109527 1mzgA 146 3.78e+01 d.224.1.1 79696 1x82A 190 4.26e+01 1j9jA 247 4.32e+01 c.106.1.1 62758 1dy9A 187 4.36e+01 1jxpA b.47.1.3 26400 1f5mA 180 4.40e+01 1f5mB d.110.2.1 40895 1t0fC 54 4.56e+01 1iq3A 110 4.56e+01 1iq3A a.39.1.6 62640 1yzvA 204 4.84e+01 2bsaA 303 4.90e+01 1gm0A 142 4.91e+01 a.39.2.1 65297 2cfxA 144 4.92e+01 1fslA 143 4.99e+01 2gdm a.1.1.2 15229 2sil 381 5.04e+01 3sil b.68.1.1 27543 1qorA 327 5.12e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1binA 143 5.13e+01 2gdm a.1.1.2 15231 1j9lA 247 5.41e+01 c.106.1.1 62762 1c8zA 265 5.44e+01 1c8zA d.23.1.1 38375 2f1rA 171 5.45e+01 1o6dA 163 5.58e+01 c.116.1.3 92567 1xl3C 92 5.61e+01 1xhbA 472 5.61e+01 1zn8A 180 5.64e+01 1ocxA 182 5.71e+01 b.81.1.3 86814 1tuzA 118 5.82e+01 1kum 108 5.83e+01 1kum b.3.1.1 22525 1go2A 304 5.92e+01 b.43.4.2,c.25.1.1 76243,76244 1lst 239 5.93e+01 1lst c.94.1.1 35755 1b2rA 304 5.94e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 1binB 143 5.99e+01 2gdm a.1.1.2 15232 1tzvA 142 6.00e+01 a.79.1.1 107526 1w34A 304 6.02e+01 1qh0A 295 6.04e+01 b.43.4.2,c.25.1.1 68891,68892 1fmb 104 6.13e+01 1fmb b.50.1.1 26777 1wlpB 138 6.30e+01 1gdtA 183 6.32e+01 2rslA a.4.1.2,c.53.1.1 16021,33348 1d8hA 311 6.35e+01 1d8iA d.63.1.1 39544 1ikoP 178 6.43e+01 b.6.1.5 71243 1bx1A 314 6.43e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1b6rA 355 6.54e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 2esnA 310 6.75e+01 1dqeA 137 6.75e+01 1dqeA a.39.2.1 17388 1v8fA 276 6.78e+01 c.26.1.4 100503 1mwwA 128 6.86e+01 d.80.1.4 91483 3sil 379 6.89e+01 3sil b.68.1.1 27542 1ny9A 143 6.89e+01 a.181.1.1 86401 1gcqC 70 7.01e+01 1gcpA b.34.2.1 60436 1yn4A 99 7.03e+01 1bdb 277 7.04e+01 1bdb c.2.1.2 29874 1dim 381 7.51e+01 3sil b.68.1.1 27544 2aw5A 541 7.52e+01 1v74B 87 7.52e+01 a.24.20.1 100443 1s31A 273 7.53e+01 1mwmA 320 7.55e+01 c.55.1.1,c.55.1.1 79580,79581 1eiyB 785 7.61e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16305,16306,25314,39313,40782,41458 1f5mB 180 7.63e+01 1f5mB d.110.2.1 40896 1gcpA 70 7.72e+01 1gcpA b.34.2.1 60430 1kdj 102 7.95e+01 1plc b.6.1.1 22864 1uuzA 137 7.99e+01 d.233.1.1 100024 1vbkA 307 8.20e+01 1qjgA 125 8.22e+01 1opy d.17.4.3 38102 1f9xA 120 8.25e+01 1g3fA g.52.1.1 59748 1fnc 314 8.39e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1qg0A 308 8.53e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1fuiA 591 8.57e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1qoxN 449 8.69e+01 1qoxN c.1.8.4 28978 1odeA 122 8.77e+01 d.79.1.2 86846 1que 303 8.84e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1ohpA 125 8.92e+01 1a41 234 8.92e+01 1a41 d.163.1.2 42174 1fnd 314 8.92e+01 1fnc b.43.4.2,c.25.1.1 25626,31516