# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rtfB 252 6.35e-01 5ptp 1fjrA 195 2.48e+00 1fjrA b.102.1.1 59855 1d8iA 311 3.04e+00 1d8iA d.63.1.1 39541 1o0sA 605 3.22e+00 c.2.1.7,c.58.1.3 86540,86541 1ly1A 181 5.00e+00 c.37.1.1 74334 1d8hA 311 6.50e+00 1d8iA d.63.1.1 39544 1ltqA 301 7.32e+00 c.108.1.9,c.37.1.1 78208,78209 1mwwA 128 1.12e+01 d.80.1.4 91483 1ibvB 229 1.13e+01 1pyaB 228 1.14e+01 1pyaB 1v8fA 276 1.17e+01 c.26.1.4 100503 1kum 108 1.23e+01 1kum b.3.1.1 22525 3mdeA 385 1.25e+01 3mdeA a.29.3.1,e.6.1.1 16594,42855 1pms 136 1.25e+01 1awe b.55.1.1 26966 1tu1A 148 1.31e+01 d.107.1.3 107316 1a5iA 265 1.38e+01 5ptp b.47.1.2 26331 1b65A 375 1.41e+01 1b65A d.154.1.1 42020 1n99A 166 1.46e+01 b.36.1.1,b.36.1.1 85459,85460 1ebfA 358 1.60e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1f5mA 180 1.82e+01 1f5mB d.110.2.1 40895 1f5mB 180 1.82e+01 1f5mB d.110.2.1 40896 1jxcA 68 1.88e+01 g.3.7.5 77201 3sil 379 1.88e+01 3sil b.68.1.1 27542 1dim 381 1.93e+01 3sil b.68.1.1 27544 1b4aA 149 1.95e+01 1b4aA a.4.5.3,d.74.2.1 16088,39721 2sil 381 1.96e+01 3sil b.68.1.1 27543 1dkzA 219 2.10e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1aym3 238 2.19e+01 1aym3 1aj6 219 2.21e+01 1aj6 d.122.1.2 41106 2b5oA 402 2.24e+01 1jltB 122 2.39e+01 a.133.1.2 66868 1ebuA 358 2.40e+01 1ebuA c.2.1.3,d.81.1.2 30035,39950 1vj2A 126 2.44e+01 b.82.1.10 100796 1u1zA 168 2.44e+01 d.38.1.6 107602 1qg0A 308 2.47e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1y8oB 128 2.53e+01 1dkxA 219 2.58e+01 1dkzA a.8.4.1,b.130.1.1 90339,90340 1g55A 343 2.67e+01 1g55A c.66.1.26 34247 1gdvA 85 2.70e+01 1ctj a.3.1.1 60458 1ogiA 303 2.75e+01 b.43.4.2,c.25.1.1 92914,92915 2cfxA 144 2.80e+01 1uch 230 2.84e+01 1uch d.3.1.6 37129 1cf2O 337 2.96e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1gppA 237 2.96e+01 b.86.1.2 76262 1que 303 2.98e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1hleA 345 2.99e+01 1ovaA e.1.1.1 42618 1b2rA 304 3.01e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 1go2A 304 3.02e+01 b.43.4.2,c.25.1.1 76243,76244 2b18A 164 3.03e+01 2bsaA 303 3.08e+01 2aw5A 541 3.08e+01 1sxvA 172 3.13e+01 2c52B 59 3.17e+01 3proD 166 3.17e+01 3proC d.52.1.1,d.52.1.1 38814,38815 1aokB 122 3.19e+01 1poa a.133.1.2 19561 1w34A 304 3.23e+01 1dmhA 311 3.31e+01 1dmhA b.3.6.1 22633 3proC 166 3.31e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1lf2A 331 3.37e+01 b.50.1.2 77914 2axyA 73 3.60e+01 1crkA 380 3.74e+01 1qh4A a.83.1.1,d.128.1.2 18458,41193 2b6nA 278 3.78e+01 3nodB 423 3.84e+01 1nseA d.174.1.1 42513 1qh0A 295 3.86e+01 b.43.4.2,c.25.1.1 68891,68892 2bjuA 453 3.87e+01 1vm6A 228 3.88e+01 c.2.1.3,d.81.1.3 108876,108877 1dp4A 435 4.02e+01 1dp4A c.93.1.1 35710 1g0rA 293 4.12e+01 1g0rA c.68.1.6 34532 1c8zA 265 4.12e+01 1c8zA d.23.1.1 38375 1qp8A 303 4.16e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 1bpr 191 4.25e+01 1dkzA b.130.1.1 43319 1x82A 190 4.47e+01 1dixA 208 4.54e+01 1bk7A d.124.1.1 41122 1pvc3 238 4.55e+01 1aym3 1xa1A 255 4.57e+01 e.3.1.1 109529 1xl3C 92 4.58e+01 1ckqA 276 4.77e+01 1ckqA c.52.1.1 33229 1cl8A 276 4.79e+01 1ckqA c.52.1.1 33230 1twuA 139 4.88e+01 d.32.1.8 107413 2cz2A 223 5.04e+01 1qxrA 189 5.05e+01 b.82.1.7 96552 1bx1A 314 5.09e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1xkzA 255 5.12e+01 1ocxA 182 5.18e+01 b.81.1.3 86814 1x92A 199 5.25e+01 1bb9 115 5.45e+01 1bb9 b.34.2.1 24554 1ex7A 186 5.57e+01 1gky c.37.1.1 59537 1y8qB 640 5.61e+01 1gky 187 5.61e+01 1gky c.37.1.1 31839 1xd3A 230 5.69e+01 1fnd 314 5.74e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1fxoA 293 5.82e+01 1g0rA c.68.1.6 34524 1fnc 314 5.84e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1smeA 329 5.87e+01 1smrA b.50.1.2 26885 1b9wA 89 5.94e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1eo9B 241 5.97e+01 3pchM b.3.6.1 22826 1s31A 273 5.99e+01 1eriA 276 6.03e+01 1ckqA c.52.1.1 33231 1e4eA 343 6.04e+01 1iow c.30.1.2,d.142.1.1 59221,59222 2bokA 241 6.09e+01 2cyeA 133 6.11e+01 1bcpC 199 6.14e+01 1bcpB b.40.2.1,d.169.1.2 25121,42430 1yzfA 195 6.30e+01 1y5eA 169 6.36e+01 1kdj 102 6.40e+01 1plc b.6.1.1 22864 1ej9A 563 6.46e+01 1a36A d.163.1.2,e.15.1.1 42172,43265 1o0iA 138 6.49e+01 d.38.1.5 86532 1acz 108 6.70e+01 1kum b.3.1.1 22524 1fnb 314 6.71e+01 1fnc b.43.4.2,c.25.1.1 25628,31518 1hxs3 237 6.79e+01 1m0wA 491 6.81e+01 c.30.1.4,d.142.1.6 78363,78364 1qpsA 261 6.82e+01 1ckqA c.52.1.1 33234 1q9jA 422 6.84e+01 c.43.1.2,c.43.1.2 104590,104591 4rhv3 236 6.85e+01 1aym3 1hylA 230 7.01e+01 5ptp b.47.1.2 26076 1fzaB 328 7.02e+01 3fib d.171.1.1,h.1.8.1 42480,45621 1vj0A 380 7.02e+01 b.35.1.2,c.2.1.1 100786,100787 1bawA 105 7.03e+01 1plc b.6.1.1 22868 1w2lA 99 7.05e+01 1g2qA 187 7.06e+01 c.61.1.1 65117 1fmb 104 7.15e+01 1fmb b.50.1.1 26777 1f28A 297 7.37e+01 1bkpA d.117.1.1 59608 2blkA 122 7.38e+01 3mddA 385 7.38e+01 3mdeA a.29.3.1,e.6.1.1 16592,42853 2a90A 240 7.39e+01 1pnsB 234 7.40e+01 i.1.1.1 88169 1ak9 275 7.62e+01 1gci c.41.1.1 32517 1mrzA 293 7.63e+01 b.43.5.1,c.26.1.3 91452,91453 2ervA 150 7.67e+01 1j5eB 256 7.69e+01 c.23.15.1 71543 1e79H 146 7.72e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 1fadA 99 7.77e+01 1fadA a.77.1.2 18428 1sviA 195 7.80e+01 c.37.1.8 106048 1g2lA 235 7.83e+01 b.47.1.2 65112 1ctj 89 7.98e+01 1ctj a.3.1.1 15798 1a2s 89 8.05e+01 1ctj a.3.1.1 15800 1m7vA 363 8.11e+01 d.174.1.1 78748 1cmxA 236 8.25e+01 1uch d.3.1.6 37130 1vh4A 435 8.37e+01 b.80.6.1 100640 1rliA 184 8.49e+01 c.23.5.6 97647 1iw7C 1119 8.60e+01 e.29.1.1 71474 1a80 277 8.72e+01 1frb c.1.7.1 28700 1k4tA 592 8.77e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 2bvfA 459 8.84e+01 1d3kA 329 8.86e+01 1nnt c.94.1.2 35889 1ifrA 121 8.90e+01 b.1.16.1 71203 1dtgA 334 8.91e+01 1nnt c.94.1.2 35896 1ret 43 8.96e+01 1ret a.4.1.2 16024 1a31A 538 8.99e+01 1a36A d.163.1.2,e.15.1.1 42170,43263