# List of top-scoring protein chains for T0285.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2lao 238 6.72e+00 1lst c.94.1.1 35758 1lst 239 6.73e+00 1lst c.94.1.1 35755 1xd3A 230 7.79e+00 1gawA 314 9.23e+00 1fnc b.43.4.2,c.25.1.1 25643,31533 1t8cA 143 1.11e+01 1qfzA 308 1.23e+01 1fnc b.43.4.2,c.25.1.1 25633,31523 1qg0A 308 1.23e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1qgaA 308 1.23e+01 1fnc b.43.4.2,c.25.1.1 25637,31527 1o0sA 605 1.41e+01 c.2.1.7,c.58.1.3 86540,86541 2a59A 159 1.76e+01 1kyyA 159 1.81e+01 c.16.1.1 73307 1kz4A 159 1.83e+01 c.16.1.1 73323 1kz9A 159 1.84e+01 c.16.1.1 73339 1fjrA 195 1.86e+01 1fjrA b.102.1.1 59855 1kz6A 159 1.86e+01 c.16.1.1 73328 1kz1A 159 2.00e+01 c.16.1.1 73318 1ly1A 181 2.23e+01 c.37.1.1 74334 1ywnA 316 2.32e+01 1sv6A 269 2.35e+01 d.177.1.1 106043 1sm4A 296 2.39e+01 b.43.4.2,c.25.1.1 98913,98914 1wuzA 103 2.91e+01 1c41A 200 2.96e+01 1di0A c.16.1.1 30962 1frqA 314 2.99e+01 1fnc b.43.4.2,c.25.1.1 25632,31522 1bx0A 314 2.99e+01 1fnc b.43.4.2,c.25.1.1 25630,31520 1bx1A 314 2.99e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1fnd 314 3.04e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1frn 314 3.07e+01 1fnc b.43.4.2,c.25.1.1 25631,31521 1fsu 492 3.26e+01 1auk c.76.1.2 35032 2etlA 228 3.46e+01 1ivtA 122 3.48e+01 b.1.16.1 71443 1gr1A 303 3.50e+01 b.43.4.2,c.25.1.1 76319,76320 1ifrA 121 3.52e+01 b.1.16.1 71203 1bawA 105 3.57e+01 1plc b.6.1.1 22868 1ltqA 301 3.59e+01 c.108.1.9,c.37.1.1 78208,78209 1k0eA 453 3.71e+01 d.161.1.1 67938 1bqeA 295 3.74e+01 b.43.4.2,c.25.1.1 64760,64761 1vr2A 316 3.74e+01 1fgkA d.144.1.7 41701 2bsaA 303 3.92e+01 1qgyA 295 3.95e+01 b.43.4.2,c.25.1.1 96344,96345 1bjk 295 3.96e+01 1fnc b.43.4.2,c.25.1.1 25649,31539 1h85A 295 3.98e+01 b.43.4.2,c.25.1.1 65716,65717 1go2A 304 3.98e+01 b.43.4.2,c.25.1.1 76243,76244 1w35A 304 3.98e+01 1w34A 304 3.98e+01 1quf 304 3.98e+01 1fnc b.43.4.2,c.25.1.1 25650,31540 1que 303 3.98e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1gjrA 304 3.98e+01 b.43.4.2,c.25.1.1 70197,70198 1b2rA 304 3.98e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 1ogjA 303 3.98e+01 b.43.4.2,c.25.1.1 92916,92917 1e62A 304 3.99e+01 1fnc b.43.4.2,c.25.1.1 59285,59286 1e63A 304 3.99e+01 1fnc b.43.4.2,c.25.1.1 59287,59288 1e64A 304 4.00e+01 1fnc b.43.4.2,c.25.1.1 59289,59290 1qgzA 295 4.04e+01 b.43.4.2,c.25.1.1 68889,68890 1yzfA 195 4.09e+01 1qh0A 295 4.14e+01 b.43.4.2,c.25.1.1 68891,68892 1yb4A 295 4.17e+01 1ewyA 303 4.26e+01 1fnc b.43.4.2,c.25.1.1 25651,31541 1iq3A 110 4.30e+01 1iq3A a.39.1.6 62640 1b65A 375 4.60e+01 1b65A d.154.1.1 42020 1bdb 277 5.04e+01 1bdb c.2.1.2 29874 1rlw 126 5.41e+01 1rlw b.7.1.1 23177 1bdg 451 5.46e+01 1qhaA c.55.1.3,c.55.1.3 33461,33462 1bci 138 5.72e+01 1rlw b.7.1.1 23180 1vj2A 126 5.77e+01 b.82.1.10 100796 1rflA 172 5.93e+01 c.37.1.8 97384 1zrtE 191 6.09e+01 1i4sA 147 6.29e+01 a.149.1.1 66026 1gdvA 85 6.40e+01 1ctj a.3.1.1 60458 1pms 136 6.40e+01 1awe b.55.1.1 26966 1jfzA 154 6.51e+01 a.149.1.1 66655 1adwA 123 6.65e+01 1bqk b.6.1.1 22893 1fdr 248 6.67e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1j9lA 247 7.00e+01 c.106.1.1 62762 2eboA 74 7.07e+01 2eboA h.3.2.1 45754 3sil 379 7.24e+01 3sil b.68.1.1 27542 2sil 381 7.26e+01 3sil b.68.1.1 27543 2f1rA 171 7.38e+01 1y6bA 366 7.81e+01 1ufgA 151 7.81e+01 b.1.16.1 107814 1rc7A 220 8.05e+01 a.149.1.1,d.50.1.1 97289,97290 1yyoA 221 8.05e+01 1sgfG 237 8.08e+01 5ptp b.47.1.2 26309 1yrqH 549 8.20e+01 1yqwQ 549 8.26e+01 2ez6A 221 8.29e+01 1yykA 221 8.29e+01 1ex7A 186 8.39e+01 1gky c.37.1.1 59537 1gky 187 8.39e+01 1gky c.37.1.1 31839 2f2eA 146 8.44e+01 2bkuA 177 8.50e+01 2b5oA 402 8.70e+01 1odfA 290 8.72e+01 c.37.1.6 92782 1x4aA 109 8.75e+01 1wa5A 176 8.76e+01 1nh2C 79 8.81e+01 b.56.1.1 91875