# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ly1A 181 2.07e-01 c.37.1.1 74334 1g55A 343 5.30e-01 1g55A c.66.1.26 34247 1d8hA 311 5.92e-01 1d8iA d.63.1.1 39544 1ltqA 301 6.81e-01 c.108.1.9,c.37.1.1 78208,78209 1fjrA 195 7.27e-01 1fjrA b.102.1.1 59855 1bx1A 314 7.68e-01 1fnc b.43.4.2,c.25.1.1 25629,31519 1fnd 314 8.04e-01 1fnc b.43.4.2,c.25.1.1 25626,31516 2cjtA 131 8.07e-01 1o0sA 605 8.59e-01 c.2.1.7,c.58.1.3 86540,86541 1ifrA 121 1.39e+00 b.1.16.1 71203 1ppjB 439 1.47e+00 d.185.1.1,d.185.1.1 104254,104255 1mrzA 293 1.59e+00 b.43.5.1,c.26.1.3 91452,91453 1f5mA 180 1.65e+00 1f5mB d.110.2.1 40895 2b18A 164 1.84e+00 1om4A 422 1.91e+00 d.174.1.1 87067 1rwiA 270 2.10e+00 b.68.9.1 97987 1rliA 184 2.21e+00 c.23.5.6 97647 1aym3 238 2.58e+00 1aym3 1tu1A 148 2.66e+00 d.107.1.3 107316 1b65A 375 2.69e+00 1b65A d.154.1.1 42020 1xkzA 255 2.70e+00 1vj2A 126 2.87e+00 b.82.1.10 100796 1bb9 115 3.49e+00 1bb9 b.34.2.1 24554 1jltB 122 3.50e+00 a.133.1.2 66868 1ogiA 303 3.66e+00 b.43.4.2,c.25.1.1 92914,92915 2cyeA 133 3.67e+00 2bmwA 304 4.06e+00 1b9wA 89 4.37e+00 1b9wA g.3.11.4,g.3.11.4 44334,44335 2ff4A 388 4.39e+00 1ryoA 327 4.64e+00 c.94.1.2 98108 1g73C 121 4.66e+00 1g3fA g.52.1.1 45375 1m7vA 363 5.06e+00 d.174.1.1 78748 1k7kA 221 5.10e+00 c.51.4.1 72104 1y8oB 128 5.13e+00 1e5mA 416 5.44e+00 1dd8A c.95.1.1,c.95.1.1 58973,58974 1yemA 179 5.63e+00 1zgoA 223 5.80e+00 1vr3A 191 6.18e+00 1twuA 139 6.35e+00 d.32.1.8 107413 2esnA 310 6.50e+00 1sxvA 172 6.55e+00 1e19A 314 6.58e+00 1b7bA c.73.1.1 34967 3proC 166 6.67e+00 3proC d.52.1.1,d.52.1.1 38812,38813 1mwwA 128 7.35e+00 d.80.1.4 91483 1dbhA 354 7.37e+00 1awe a.87.1.1,b.55.1.1 18514,26967 2cz2A 223 7.54e+00 1ocxA 182 7.65e+00 b.81.1.3 86814 1i58A 189 7.89e+00 1b3qA d.122.1.3 61773 1v8fA 276 8.39e+00 c.26.1.4 100503 1xd3A 230 8.49e+00 1fadA 99 8.60e+00 1fadA a.77.1.2 18428 2fmlA 273 8.69e+00 2biiA 424 8.78e+00 1x82A 190 9.00e+00 1x99A 145 9.44e+00 1naqA 112 9.57e+00 d.58.5.2 91761 1rg9A 383 9.70e+00 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1vl2A 421 9.91e+00 c.26.2.1,d.210.1.1 108708,108709 1bdb 277 1.01e+01 1bdb c.2.1.2 29874 1kao 167 1.01e+01 1ctqA c.37.1.8 32014 3sil 379 1.02e+01 3sil b.68.1.1 27542 2eifA 136 1.02e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 2a90A 240 1.05e+01 1jd5A 124 1.06e+01 g.52.1.1 66544 1ebfA 358 1.08e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1kdj 102 1.09e+01 1plc b.6.1.1 22864 1ohpA 125 1.12e+01 2b1xA 470 1.13e+01 1pyaB 228 1.13e+01 1pyaB 1ywnA 316 1.17e+01 1dbxA 158 1.21e+01 1dbuA d.116.1.1 40928 1dmhA 311 1.23e+01 1dmhA b.3.6.1 22633 1gppA 237 1.26e+01 b.86.1.2 76262 1odfA 290 1.26e+01 c.37.1.6 92782 1g8aA 227 1.29e+01 c.66.1.3 90506 1umwA 237 1.30e+01 d.223.1.2,d.223.1.2 99631,99632 1tuaA 191 1.33e+01 d.51.1.1,d.51.1.1 107321,107322 2avtA 378 1.33e+01 1i19A 561 1.35e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2hf9A 226 1.37e+01 1j7xA 302 1.38e+01 c.14.1.2 66425 1vj0A 380 1.40e+01 b.35.1.2,c.2.1.1 100786,100787 2bwqA 129 1.41e+01 1o0iA 138 1.43e+01 d.38.1.5 86532 2ch4A 320 1.47e+01 2gj8A 172 1.50e+01 1tvdA 116 1.51e+01 1tvdA b.1.1.1 20650 1eaqA 140 1.56e+01 b.2.5.6 76144 2g8yA 385 1.57e+01 1t46A 313 1.61e+01 d.144.1.7 106397 1b8aA 438 1.63e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1eljA 381 1.64e+01 4mbp c.94.1.1 35791 2ausB 60 1.68e+01 1yn4A 99 1.68e+01 1g2nA 264 1.69e+01 1lbd a.123.1.1 60227 2czvC 120 1.70e+01 1iybA 208 1.70e+01 d.124.1.1 90720 1dy9A 187 1.72e+01 1jxpA b.47.1.3 26400 1in0A 163 1.72e+01 d.58.49.1,d.58.49.1 83694,83695 1b6rA 355 1.75e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1dm9A 133 1.75e+01 1dm9A d.66.1.3 39560 1kutA 230 1.78e+01 d.143.1.1 73017 2axyA 73 1.79e+01 1bkjA 240 1.79e+01 1bkjA d.90.1.1 40243 1bw0A 416 1.81e+01 1bw0A c.67.1.1 34385 1xaoA 121 1.82e+01 2cwsA 237 1.86e+01 2h3bA 494 1.91e+01 1w2lA 99 1.92e+01 2gm5A 139 1.93e+01 2blkA 122 1.98e+01 1y5eA 169 2.00e+01 1hw6A 278 2.02e+01 1frb c.1.7.1 61296 1s3zA 165 2.07e+01 d.108.1.1 105250 1avbA 226 2.09e+01 1led b.29.1.1 24158 1to2E 281 2.09e+01 1w85A 368 2.11e+01 1ryp2 233 2.13e+01 1ryp2 1jae 471 2.14e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1h12A 405 2.23e+01 a.102.1.2 83447 1zndA 174 2.28e+01 2bvfA 459 2.28e+01 1qy1A 174 2.28e+01 b.60.1.1 96568 1gdvA 85 2.30e+01 1ctj a.3.1.1 60458 1eazA 125 2.30e+01 b.55.1.1 70113 1tmxA 293 2.33e+01 1i2mA 216 2.37e+01 1byuA c.37.1.8 61568 1fdr 248 2.38e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1res 43 2.41e+01 1ret a.4.1.2 16023 1j1lA 290 2.48e+01 b.82.1.12 90766 1wjxA 122 2.53e+01 1yfsA 465 2.53e+01 1x6mA 196 2.56e+01 1cl8A 276 2.57e+01 1ckqA c.52.1.1 33230 1lkkA 105 2.57e+01 1lckA d.93.1.1 40412 2a9dA 372 2.59e+01 1jxcA 68 2.71e+01 g.3.7.5 77201 1bs0A 384 2.78e+01 1bs0A c.67.1.4 34490 1o59A 355 2.80e+01 b.18.1.22,b.18.1.22 92495,92496 1yqfA 203 2.80e+01 1uekA 275 2.85e+01 d.14.1.5,d.58.26.5 88483,88484 1utcA 363 2.86e+01 a.118.1.4,b.69.6.1 99914,99915 1gky 187 2.98e+01 1gky c.37.1.1 31839 1jetA 517 3.00e+01 1jevA c.94.1.1 35718 1y60A 169 3.04e+01 1vd5A 377 3.08e+01 a.102.1.7 108518 1owfA 99 3.08e+01 a.55.1.1 87487 1xzoA 174 3.14e+01 1sqwA 188 3.20e+01 1kte 105 3.21e+01 1kte c.47.1.1 32771 1mwmA 320 3.22e+01 c.55.1.1,c.55.1.1 79580,79581 2gs8A 317 3.25e+01 1g4mA 393 3.29e+01 b.1.18.11,b.1.18.11 65143,65144 1xneA 113 3.30e+01 2d0oA 610 3.33e+01 1gp6A 356 3.33e+01 b.82.2.1 65441 1j83A 180 3.35e+01 b.18.1.12 66430 1ex7A 186 3.38e+01 1gky c.37.1.1 59537 1v8bA 479 3.41e+01 1fuiA 591 3.49e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1fp2A 352 3.50e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1jiwI 106 3.51e+01 1smpI b.61.2.1 63078 2fv1A 377 3.51e+01 1l0wA 580 3.55e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1gzcA 239 3.56e+01 b.29.1.1 70803 2d4rA 147 3.58e+01 1ga3A 113 3.58e+01 1ga3A a.26.1.2 60411 2c52B 59 3.59e+01 2f1lA 187 3.62e+01 2bkrA 212 3.63e+01 1amx 180 3.64e+01 1amx b.2.3.1 22410 1iwmA 186 3.72e+01 b.125.1.2 83758 1aohA 147 3.76e+01 1aohA b.2.2.2 22401 1x9gA 200 3.79e+01 c.33.1.3 109527 1n1cA 217 3.83e+01 a.184.1.1 85254 1ufkA 254 3.83e+01 c.66.1.39 99340 1s21A 206 3.83e+01 d.166.1.4 105222 1svy 114 3.88e+01 1svy d.109.1.1 40831 2bh8A 101 3.92e+01 1dkzA 219 3.96e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 2bj7A 138 4.00e+01 2bpsA 81 4.11e+01 1xl3C 92 4.11e+01 1j1tA 233 4.16e+01 b.29.1.18 90771 1ae9A 179 4.25e+01 1ae9A d.163.1.1 42153 1jb7B 260 4.30e+01 1otcB b.40.4.3 62839 2bhgA 209 4.30e+01 1ztuA 341 4.33e+01 1dcs 311 4.33e+01 1dcs b.82.2.1 28124 1ta9A 450 4.35e+01 1emzA 21 4.41e+01 j.35.1.1 46282 1gxuA 91 4.44e+01 d.58.10.1 76378 1m40A 263 4.46e+01 e.3.1.1 74437 1q1oA 98 4.47e+01 d.15.2.2 95596 1t33A 224 4.49e+01 a.4.1.9,a.121.1.1 106295,106296 1b8oA 284 4.51e+01 1b8oA c.56.2.1 33762 1gcqC 70 4.52e+01 1gcpA b.34.2.1 60436 1l0bA 229 4.52e+01 c.15.1.3,c.15.1.3 73391,73392 1trb 320 4.53e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1qksA 567 4.53e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2he7A 283 4.55e+01 1y7rA 133 4.56e+01 2f1rA 171 4.57e+01 1k38A 254 4.63e+01 e.3.1.1 84303 1vd3A 217 4.68e+01 1h4rA 314 4.71e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1fmb 104 4.71e+01 1fmb b.50.1.1 26777 1xknA 355 4.76e+01 1ru4A 400 4.78e+01 b.80.1.9 97836 1je0A 236 4.84e+01 c.56.2.1 66581 2gu2A 312 4.85e+01 1ko3A 230 4.87e+01 d.157.1.1 90974 1jofA 365 4.88e+01 b.69.10.1 71775 1w96A 554 4.90e+01 1orc 71 4.96e+01 1orc a.35.1.2 17054 2d0iA 333 5.03e+01 1rurH 218 5.06e+01 b.1.1.1,b.1.1.2 97879,97880 1jz8A 1023 5.07e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1svpA 161 5.08e+01 1svpA b.47.1.3 26384 1y07A 128 5.19e+01 1f5vA 240 5.27e+01 1bkjA d.90.1.1 40255 1rlw 126 5.31e+01 1rlw b.7.1.1 23177 1k5nB 100 5.33e+01 b.1.1.2 77268 1ogsA 497 5.35e+01 b.71.1.2,c.1.8.3 86997,86998 2frgP 106 5.35e+01 1rq2A 382 5.37e+01 c.32.1.1,d.79.2.1 105048,105049 1ze3D 125 5.39e+01 2ervA 150 5.40e+01 2bf9A 36 5.46e+01 2bycA 137 5.52e+01 1wdvA 152 5.73e+01 1dytA 133 5.75e+01 7rsa d.5.1.1 37288 1opd 85 5.91e+01 1ptf d.94.1.1 40560 1ik9A 213 5.93e+01 b.59.1.1,h.1.11.1 66176,66177 1gvnA 90 5.96e+01 a.8.2.1 76353 1h8eH 146 6.02e+01 1e79H b.93.1.1 60757 2bw3A 534 6.02e+01 1tjyA 316 6.03e+01 c.93.1.1 107062 1e25A 282 6.07e+01 1e25A e.3.1.1 42731 1f28A 297 6.12e+01 1bkpA d.117.1.1 59608 1cp2A 269 6.12e+01 1cp2A c.37.1.10 32269 1vapA 123 6.18e+01 1poa a.133.1.2 19548 1sbp 310 6.19e+01 1sbp c.94.1.1 35760 1kwgA 645 6.28e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2evwX 166 6.29e+01 1jyhA 157 6.30e+01 d.60.1.3 71956 1lba 146 6.34e+01 1lba d.118.1.1 41062 1rm6B 324 6.35e+01 1xtmA 175 6.36e+01 2fy7A 287 6.38e+01 2av4A 162 6.40e+01 3chbD 104 6.41e+01 3chbD b.40.2.1 24970 1kktA 511 6.46e+01 a.102.2.1 68687 2frnA 278 6.47e+01 1whzA 70 6.53e+01 1ia8A 289 6.53e+01 1ia8A d.144.1.7 62112 1gvp 87 6.54e+01 1gvp b.40.4.7 25369 1xs1A 193 6.62e+01 1ixcA 294 6.67e+01 a.4.5.37,c.94.1.1 83764,83765 1vqoW 154 6.81e+01 1tqnA 486 6.83e+01 a.104.1.1 107238 2gu1A 361 6.91e+01 1wteA 272 6.94e+01 2hlcA 230 6.94e+01 5ptp b.47.1.2 26074 2h03A 291 6.97e+01 1ifqA 138 6.98e+01 1ifqA d.110.4.1 62350 1gxrA 337 7.04e+01 b.69.4.1 70722 1wloA 136 7.16e+01 1crzA 403 7.17e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1ci9A 392 7.21e+01 e.3.1.1 64767 1ohtA 215 7.22e+01 d.118.1.1 87036 1cjxA 357 7.24e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1i2aA 219 7.36e+01 e.24.1.1 90660 1njhA 119 7.38e+01 b.128.1.1 85787 1gw5S 142 7.39e+01 d.110.4.2 70633 1xklA 273 7.40e+01 1zxuA 217 7.40e+01 1j96A 323 7.43e+01 c.1.7.1 71616 1zlbA 122 7.44e+01 1lst 239 7.48e+01 1lst c.94.1.1 35755 2as0A 396 7.50e+01 1yzfA 195 7.50e+01 2aotA 292 7.53e+01 2cu3A 64 7.56e+01 1b2pA 119 7.65e+01 1b2pA b.78.1.1 27998 1b35A 260 7.73e+01 1b35A b.121.4.1 23333 1luzA 88 7.87e+01 b.40.4.5 74271 1y81A 138 7.88e+01 1qwtA 255 7.91e+01 b.26.1.3 96501 2ge7A 108 7.93e+01 1b7yB 785 8.03e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ctj 89 8.03e+01 1ctj a.3.1.1 15798 1hleA 345 8.11e+01 1ovaA e.1.1.1 42618 1kv7A 488 8.24e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1ru0A 105 8.37e+01 2fjrA 189 8.37e+01 2ai4A 119 8.45e+01 1q15A 503 8.49e+01 c.26.2.1,d.153.1.1 95538,95539 1odkA 235 8.50e+01 c.56.2.1 86863 2czdA 208 8.51e+01 2ffcA 353 8.59e+01 1zsqA 528 8.61e+01 1ibyA 112 8.63e+01 1ibzA b.6.1.4 62233 1x1eA 239 8.65e+01 1rxyA 253 8.72e+01 c.56.2.1 98065 1ckmA 330 8.79e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1wvhA 134 8.83e+01 2afwA 329 8.84e+01 1s4iA 175 8.87e+01 1ra0A 430 8.98e+01