# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cjtA 131 1.29e+00 1gky 187 1.52e+00 1gky c.37.1.1 31839 1ex7A 186 1.59e+00 1gky c.37.1.1 59537 1fjrA 195 1.83e+00 1fjrA b.102.1.1 59855 1ifrA 121 1.88e+00 b.1.16.1 71203 1o0sA 605 2.84e+00 c.2.1.7,c.58.1.3 86540,86541 1xd3A 230 3.41e+00 1ltqA 301 3.46e+00 c.108.1.9,c.37.1.1 78208,78209 2eboA 74 5.34e+00 2eboA h.3.2.1 45754 1ly1A 181 5.34e+00 c.37.1.1 74334 1cjxA 357 6.02e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 1y8oB 128 6.09e+00 1sr4B 261 6.22e+00 d.151.1.1 105949 1fdr 248 6.71e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 2gj8A 172 6.74e+00 1mrzA 293 7.46e+00 b.43.5.1,c.26.1.3 91452,91453 1bb9 115 7.68e+00 1bb9 b.34.2.1 24554 1f06A 320 8.49e+00 1dapA c.2.1.3,d.81.1.3 59556,59557 1jfzA 154 9.69e+00 a.149.1.1 66655 1vj2A 126 1.21e+01 b.82.1.10 100796 2ez6A 221 1.21e+01 1s4iA 175 1.29e+01 1x6iA 91 1.33e+01 2a90A 240 1.33e+01 1o59A 355 1.35e+01 b.18.1.22,b.18.1.22 92495,92496 2f2eA 146 1.63e+01 1mzgA 146 1.68e+01 d.224.1.1 79696 1t0fC 54 1.70e+01 1jltB 122 1.70e+01 a.133.1.2 66868 1xtmA 175 1.80e+01 1wmsA 177 1.84e+01 c.37.1.8 109414 2h2tB 175 1.86e+01 2cfxA 144 1.98e+01 1d8hA 311 2.08e+01 1d8iA d.63.1.1 39544 1x9gA 200 2.12e+01 c.33.1.3 109527 1bh9B 89 2.14e+01 1bh9B a.22.1.3 16485 2f1rA 171 2.16e+01 1kdj 102 2.25e+01 1plc b.6.1.1 22864 1xfrA 128 2.31e+01 1ocxA 182 2.35e+01 b.81.1.3 86814 1xo7A 166 2.49e+01 1vbkA 307 2.56e+01 1rlw 126 2.70e+01 1rlw b.7.1.1 23177 1jxcA 68 2.74e+01 g.3.7.5 77201 1f5mA 180 2.76e+01 1f5mB d.110.2.1 40895 1zn8A 180 2.79e+01 1yzvA 204 2.91e+01 1xl3C 92 2.92e+01 1dy9A 187 2.92e+01 1jxpA b.47.1.3 26400 1tuzA 118 2.97e+01 2a9dA 372 3.13e+01 1b6rA 355 3.21e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1mwwA 128 3.24e+01 d.80.1.4 91483 2azeA 155 3.45e+01 1j9lA 247 3.52e+01 c.106.1.1 62762 1ycdA 243 3.54e+01 1mwmA 320 3.67e+01 c.55.1.1,c.55.1.1 79580,79581 1s0aA 429 3.70e+01 c.67.1.4 98263 1yn4A 99 3.78e+01 1gcqC 70 3.96e+01 1gcpA b.34.2.1 60436 1ywnA 316 4.10e+01 1v8fA 276 4.27e+01 c.26.1.4 100503 1r26A 125 4.37e+01 c.47.1.1 96847 1fxoA 293 4.38e+01 1g0rA c.68.1.6 34524 1uuzA 137 4.47e+01 d.233.1.1 100024 1wmuA 141 4.67e+01 a.1.1.2 109416 1b5pA 385 4.83e+01 c.67.1.1 90403 1ufyA 122 4.96e+01 d.79.1.2 88489 1m98A 317 5.01e+01 a.175.1.1,d.17.4.6 78866,78867 2gpyA 233 5.02e+01 1b65A 375 5.04e+01 1b65A d.154.1.1 42020 2g29A 417 5.05e+01 1jmcA 246 5.12e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1v74B 87 5.15e+01 a.24.20.1 100443 1fmb 104 5.16e+01 1fmb b.50.1.1 26777 2ausB 60 5.18e+01 2cyeA 133 5.22e+01 1aohA 147 5.24e+01 1aohA b.2.2.2 22401 1gppA 237 5.25e+01 b.86.1.2 76262 1g73C 121 5.30e+01 1g3fA g.52.1.1 45375 1lst 239 5.48e+01 1lst c.94.1.1 35755 1yemA 179 5.48e+01 1o7dE 126 5.50e+01 1o6dA 163 5.50e+01 c.116.1.3 92567 1u5tB 169 5.52e+01 a.4.5.54,a.4.5.54 107686,107687 1x82A 190 5.53e+01 1iwmA 186 5.79e+01 b.125.1.2 83758 1wdjA 187 5.91e+01 2blkA 122 6.12e+01 1tzvA 142 6.30e+01 a.79.1.1 107526 1xdpA 687 6.40e+01 1bdb 277 6.53e+01 1bdb c.2.1.2 29874 1lnwA 147 6.75e+01 a.4.5.28 78104 2bkyA 97 6.77e+01 1tu1A 148 6.77e+01 d.107.1.3 107316 1fuiA 591 6.78e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1jd5A 124 6.97e+01 g.52.1.1 66544 1qgiA 259 7.07e+01 1qgiA d.2.1.7 37001 1ogqA 313 7.15e+01 c.10.2.8 86996 2hekA 371 7.18e+01 1tvdA 116 7.27e+01 1tvdA b.1.1.1 20650 2esnA 310 7.44e+01 1kte 105 7.55e+01 1kte c.47.1.1 32771 1geqA 248 7.61e+01 2tysA c.1.2.4 28589 1ng2A 193 7.83e+01 b.34.2.1,b.34.2.1 85660,85661 1ikoP 178 7.90e+01 b.6.1.5 71243 1res 43 8.03e+01 1ret a.4.1.2 16023 1ohpA 125 8.06e+01 1y12A 165 8.10e+01 1jqlB 140 8.10e+01 c.37.1.20 63234 1uw1A 80 8.12e+01 k.42.1.1 100069 1y7jA 53 8.18e+01 1xc0A 33 8.47e+01 j.6.1.1 109542 1gdvA 85 8.47e+01 1ctj a.3.1.1 60458 1dqeA 137 8.51e+01 1dqeA a.39.2.1 17388 1iznA 286 8.53e+01 e.43.1.1 83847 1r5iD 216 8.57e+01 a.202.1.1 97091 1f60A 458 8.57e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1zxuA 217 8.69e+01 1ul7A 102 8.77e+01 d.129.6.1 99540 1hruA 188 8.82e+01 1hruA d.115.1.1 40926 1i19A 561 8.83e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1r1tA 122 8.91e+01 a.4.5.5 104769 3sil 379 8.94e+01 3sil b.68.1.1 27542 2a6hE 99 9.00e+01