# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fxoA 293 3.43e-01 1g0rA c.68.1.6 34524 2gdnA 267 3.55e-01 2h3bA 494 4.19e-01 1jmxA 494 6.81e-01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2fflA 756 7.66e-01 1h12A 405 1.18e+00 a.102.1.2 83447 1uvjA 664 1.50e+00 e.8.1.6 100045 1b65A 375 1.54e+00 1b65A d.154.1.1 42020 1fc6A 388 1.68e+00 1fc6A b.36.1.3,c.14.1.2 64738,64739 1xdpA 687 2.26e+00 1twuA 139 2.77e+00 d.32.1.8 107413 1gteA 1025 2.85e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1qksA 567 3.24e+00 1qksA a.3.1.2,b.70.2.1 15951,27710 1xeoA 168 3.89e+00 1u04A 771 4.62e+00 b.34.14.1,c.55.3.10 107539,107540 1r6dA 337 5.03e+00 c.2.1.2 97148 1d3vA 323 5.10e+00 1d3vA c.42.1.1 32559 1zkjA 359 5.48e+00 1g6aA 271 5.48e+00 1btl e.3.1.1 42704 2b18A 164 5.51e+00 1pc3A 350 5.72e+00 c.94.1.1 104102 2fug1 438 5.83e+00 2c1xA 456 6.31e+00 1bsg 266 6.44e+00 1btl e.3.1.1 42729 2ccqA 99 7.25e+00 1zvdA 380 7.48e+00 1un7A 400 7.52e+00 b.92.1.5,c.1.9.10 99657,99658 1fmtA 314 8.13e+00 1fmtA b.46.1.1,c.65.1.1 25758,34174 1qyiA 384 8.55e+00 c.108.1.13 96595 2d1eA 248 8.63e+00 1vprA 374 1.02e+01 1k0wA 231 1.02e+01 c.74.1.1 77220 1ikoP 178 1.06e+01 b.6.1.5 71243 1poiA 317 1.07e+01 1poiA c.124.1.2 34153 1qhdA 398 1.12e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1d8hA 311 1.13e+01 1d8iA d.63.1.1 39544 1yloA 348 1.16e+01 1fxlA 167 1.16e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1p3dA 475 1.22e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1afwA 393 1.24e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1nu5A 370 1.29e+01 c.1.11.2,d.54.1.1 92183,92184 1q2bA 434 1.31e+01 b.29.1.10 95624 3sil 379 1.34e+01 3sil b.68.1.1 27542 1d0cA 444 1.35e+01 d.174.1.1 64769 1khbA 625 1.38e+01 c.91.1.1,c.109.1.1 68606,68607 1aohA 147 1.39e+01 1aohA b.2.2.2 22401 1ly1A 181 1.42e+01 c.37.1.1 74334 1yymG 313 1.45e+01 2a1hA 365 1.48e+01 1w7lA 422 1.49e+01 c.67.1.1 109226 2ervA 150 1.51e+01 1xkzA 255 1.54e+01 1nqeA 594 1.55e+01 f.4.3.3 86027 1ytvA 366 1.56e+01 1rliA 184 1.57e+01 c.23.5.6 97647 3htsB 102 1.58e+01 2hts a.4.5.22 16175 1rfs 139 1.59e+01 1rfs b.33.1.1 24434 2ffcA 353 1.62e+01 1vns 609 1.62e+01 1vns a.111.1.3 19061 2dpmA 284 1.63e+01 2dpmA c.66.1.28 34246 1g87A 614 1.66e+01 a.102.1.2,b.2.2.2 83275,83276 1gbg 214 1.67e+01 1axkA b.29.1.2 24171 1tu1A 148 1.67e+01 d.107.1.3 107316 1qopB 396 1.69e+01 2tysB c.79.1.1 35270 1uteA 313 1.70e+01 1uteA d.159.1.1 42078 1jf9A 408 1.77e+01 1c0nA c.67.1.3 62931 1aym3 238 1.86e+01 1aym3 1up8A 598 1.89e+01 a.111.1.2 99710 1f5nA 592 1.92e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1ga8A 311 1.94e+01 1ga8A c.68.1.4 34516 1g55A 343 1.95e+01 1g55A c.66.1.26 34247 1x0cA 549 1.95e+01 1wruA 379 2.07e+01 1wp5A 323 2.18e+01 1kutA 230 2.18e+01 d.143.1.1 73017 2ghsA 326 2.19e+01 1ve4A 206 2.19e+01 1vl2A 421 2.24e+01 c.26.2.1,d.210.1.1 108708,108709 1rl4A 188 2.25e+01 d.167.1.1 97636 1j7xA 302 2.29e+01 c.14.1.2 66425 1r85A 379 2.31e+01 c.1.8.3 104839 2g30A 258 2.41e+01 1dbhA 354 2.41e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1dkiA 371 2.46e+01 1dkiA d.3.1.1 37090 2fr1A 486 2.47e+01 1ssqA 267 2.50e+01 b.81.1.6 105993 1tqyA 424 2.51e+01 c.95.1.1,c.95.1.1 107245,107246 1k0fA 277 2.56e+01 c.92.2.2 71974 2ez3A 302 2.57e+01 1k07A 263 2.65e+01 d.157.1.1 77218 1gg4A 452 2.74e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1sqnA 261 2.75e+01 a.123.1.1 105944 1k32A 1045 2.76e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1f5mA 180 2.84e+01 1f5mB d.110.2.1 40895 1umkA 275 2.91e+01 1gvjA 146 2.92e+01 a.4.5.21 90525 2cwsA 237 2.96e+01 1pcxA 810 2.99e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2biqA 219 3.00e+01 2fp4B 395 3.00e+01 1jmcA 246 3.05e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 2cjtA 131 3.12e+01 1yp1A 202 3.15e+01 2f6uA 234 3.21e+01 1apyB 141 3.21e+01 1apyB 1kaeA 434 3.21e+01 c.82.1.2 72247 1cr5A 189 3.24e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1zbpA 273 3.24e+01 1sdiA 213 3.33e+01 a.198.1.1 105437 1ta9A 450 3.33e+01 1sznA 417 3.34e+01 b.71.1.1,c.1.8.1 106162,106163 1sr4A 206 3.36e+01 b.42.2.1 105948 1ojjA 402 3.36e+01 b.29.1.10 93130 2b7kA 200 3.36e+01 1bb9 115 3.38e+01 1bb9 b.34.2.1 24554 1ua7A 422 3.39e+01 b.71.1.1,c.1.8.1 107759,107760 1kewA 361 3.39e+01 c.2.1.2 68544 1kwfA 363 3.39e+01 a.102.1.2 73078 1cb8A 678 3.44e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1oflA 481 3.51e+01 b.80.1.4 103934 1ogsA 497 3.61e+01 b.71.1.2,c.1.8.3 86997,86998 1x82A 190 3.63e+01 2blnA 305 3.66e+01 1ex7A 186 3.68e+01 1gky c.37.1.1 59537 1amx 180 3.70e+01 1amx b.2.3.1 22410 1vpmA 169 3.71e+01 2gjlA 328 3.76e+01 1dd9A 338 3.77e+01 1dd9A e.13.1.1 43254 1twfA 1733 3.86e+01 2cwzA 141 3.87e+01 1mnaA 298 3.90e+01 c.69.1.22 79322 2a14A 263 3.92e+01 1qy5A 269 3.93e+01 d.122.1.1 96573 1zdrA 164 3.93e+01 1ifrA 121 3.93e+01 b.1.16.1 71203 1mkaA 171 3.95e+01 1mkaA d.38.1.2 38543 2afwA 329 4.01e+01 2a77H 222 4.02e+01 1eejA 216 4.07e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1ooyA 481 4.09e+01 c.124.1.3,c.124.1.2 93388,93389 1h09A 338 4.12e+01 b.109.1.1,c.1.8.8 83420,83421 2gx9A 129 4.14e+01 1ei6A 406 4.21e+01 c.76.1.4 90443 1hdhA 536 4.21e+01 c.76.1.2 65805 1c44A 123 4.30e+01 1qndA d.106.1.1 40795 1qh5A 260 4.33e+01 1qh5A d.157.1.2 42057 2b0jA 358 4.38e+01 1vj0A 380 4.42e+01 b.35.1.2,c.2.1.1 100786,100787 1ra0A 430 4.44e+01 1c8uA 285 4.44e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 2cz2A 223 4.50e+01 1zk4A 251 4.52e+01 1ivg 388 4.53e+01 2qwc b.68.1.1 27578 1a4iA 301 4.58e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1wqaA 455 4.61e+01 1f5vA 240 4.62e+01 1bkjA d.90.1.1 40255 1fjrA 195 4.62e+01 1fjrA b.102.1.1 59855 1xnzA 264 4.63e+01 1dfmA 223 4.78e+01 1d2iA c.52.1.5 33295 1i2mA 216 4.79e+01 1byuA c.37.1.8 61568 2gwdA 449 4.85e+01 1g1tA 157 4.86e+01 d.169.1.1,g.3.11.1 65104,65105 2gk4A 232 4.90e+01 1gky 187 4.91e+01 1gky c.37.1.1 31839 1dqgA 135 5.00e+01 1dqgA b.42.2.2 25579 1b6rA 355 5.01e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1y1nA 291 5.04e+01 1y5eA 169 5.04e+01 1f1xA 322 5.05e+01 d.32.1.3,d.32.1.3 83208,83209 1o26A 232 5.06e+01 d.207.1.1 86566 1nijA 318 5.08e+01 c.37.1.10,d.237.1.1 85741,85742 2an3A 289 5.08e+01 1xl7A 612 5.09e+01 1ek6A 348 5.12e+01 1xel c.2.1.2 29800 2g9zA 348 5.14e+01 2ptd 298 5.19e+01 2plc c.1.18.2 29605 2fwhA 134 5.21e+01 1rgyA 360 5.27e+01 e.3.1.1 97456 1y8oB 128 5.27e+01 1g73C 121 5.28e+01 1g3fA g.52.1.1 45375 1to6A 371 5.29e+01 c.141.1.1 107170 1rypB 250 5.29e+01 1rypB d.153.1.4 41933 1xo7A 166 5.31e+01 1t94A 459 5.37e+01 d.240.1.1,e.8.1.7 106701,106702 1ze3C 205 5.40e+01 1mwwA 128 5.43e+01 d.80.1.4 91483 1jfzA 154 5.46e+01 a.149.1.1 66655 1vr0A 247 5.47e+01 1vh5A 148 5.48e+01 d.38.1.5 100642 1iq6A 134 5.53e+01 d.38.1.4 76755 2gj8A 172 5.55e+01 1o59A 355 5.57e+01 b.18.1.22,b.18.1.22 92495,92496 1q87A 221 5.64e+01 e.47.1.1 96192 1ehiA 377 5.70e+01 1iow c.30.1.2,d.142.1.1 31716,41484 2aq2B 237 5.70e+01 1w8oA 601 5.71e+01 1rq2A 382 5.73e+01 c.32.1.1,d.79.2.1 105048,105049 1ocxA 182 5.77e+01 b.81.1.3 86814 1xfsA 178 5.83e+01 d.129.3.5 109589 1lrzA 426 5.87e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ri6A 343 5.91e+01 b.69.11.1 97503 1xv5A 401 5.92e+01 1ep0A 185 6.09e+01 1dzrA b.82.1.1 28080 1gpiA 431 6.14e+01 b.29.1.10 65450 1uylA 236 6.15e+01 d.122.1.1 108147 1szqA 483 6.18e+01 e.44.1.1 99045 1ivnA 190 6.19e+01 c.23.10.5 83719 1ei5A 520 6.20e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1x8qA 184 6.22e+01 1rz2A 254 6.22e+01 b.100.1.1 105130 1uasA 362 6.27e+01 b.71.1.1,c.1.8.1 88388,88389 1j1tA 233 6.33e+01 b.29.1.18 90771 1xcrA 316 6.34e+01 2gk9A 426 6.39e+01 1tf1A 198 6.39e+01 d.110.2.2 106826 1mtzA 293 6.44e+01 c.69.1.7 79467 1d4aA 273 6.45e+01 1d4aA c.23.5.3 31219 1y08A 323 6.49e+01 1zsqA 528 6.52e+01 1uwwA 191 6.63e+01 b.18.1.23 108079 1m98A 317 6.68e+01 a.175.1.1,d.17.4.6 78866,78867 1u7iA 136 6.71e+01 d.32.1.7 107724 2culA 232 6.76e+01 1n8kA 374 6.76e+01 b.35.1.2,c.2.1.1 80298,80299 1o66A 275 6.77e+01 c.1.12.8 92547 1f28A 297 6.77e+01 1bkpA d.117.1.1 59608 1lh0A 213 6.78e+01 c.61.1.1 73896 1zj8A 566 6.79e+01 1xl3C 92 6.83e+01 1womA 271 6.87e+01 1tvgA 153 6.90e+01 2bivA 243 6.91e+01 1gzcA 239 6.92e+01 b.29.1.1 70803 1hy7A 173 6.97e+01 d.92.1.11 65957 1rm6A 769 7.00e+01 1tjyA 316 7.03e+01 c.93.1.1 107062 2gu3A 136 7.13e+01 8fabB 224 7.14e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 1zejA 293 7.17e+01 2fuqA 747 7.18e+01 1a8l 226 7.26e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1vr7A 142 7.27e+01 1twiA 434 7.27e+01 b.49.2.3,c.1.6.1 107399,107400 1ok7A 366 7.29e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1id1A 153 7.36e+01 1id1A c.2.1.9 62286 1efpB 252 7.38e+01 1efvB c.26.2.3 31636 1ydyA 356 7.45e+01 1jxcA 68 7.49e+01 g.3.7.5 77201 1o88A 353 7.51e+01 b.80.1.1 81178 1sgvA 316 7.52e+01 b.122.1.1,d.265.1.2 98858,98859 1uirA 314 7.58e+01 c.66.1.17 99429 1wpnA 188 7.58e+01 1tvdA 116 7.60e+01 1tvdA b.1.1.1 20650 2d4rA 147 7.60e+01 1rwyA 109 7.62e+01 a.39.1.4 98002 1zfjA 491 7.63e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 3bamA 213 7.69e+01 1bam c.52.1.3 33288 1lm4A 194 7.73e+01 d.167.1.1 84626 2fnuA 375 7.74e+01 2eifA 136 7.79e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 3tss 194 7.86e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1ty0A 211 7.86e+01 b.40.2.2,d.15.6.1 107440,107441 1gci 269 7.92e+01 1gci c.41.1.1 32503 1eaqA 140 7.93e+01 b.2.5.6 76144 1zjkA 403 7.95e+01 1w9pA 433 7.97e+01 1xqwA 293 7.98e+01 1xiyA 182 8.00e+01 1wdpA 495 8.02e+01 1q0eA 152 8.08e+01 b.1.8.1 95504 1udc 338 8.10e+01 1xel c.2.1.2 29785 1u6rA 380 8.15e+01 1jltB 122 8.21e+01 a.133.1.2 66868 1h54A 754 8.25e+01 a.102.1.4,b.30.5.3 60634,60635 1oe8A 211 8.30e+01 a.45.1.1,c.47.1.5 86905,86906 1e4cP 215 8.31e+01 2fua c.74.1.1 34969 1qg3A 195 8.42e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1cq3A 233 8.48e+01 1cq3A b.27.1.1 23923 1cruA 454 8.50e+01 1c9uA b.68.2.1 27617 1ru3A 732 8.65e+01 e.26.1.3 97835 2sak 121 8.65e+01 2sak d.15.5.1 37711 1q35A 320 8.66e+01 c.94.1.1 95661 1sawA 225 8.67e+01 1mtyD 512 8.67e+01 1mhyD a.25.1.2 16742 1eu8A 409 8.68e+01 1eu8A c.94.1.1 59502 1r9dA 787 8.73e+01 c.7.1.1 104865 1m40A 263 8.83e+01 e.3.1.1 74437 1e58A 249 8.84e+01 1qhfA c.60.1.1 59262 1sb8A 352 8.86e+01 c.2.1.2 105410 1puiA 210 8.92e+01 c.37.1.8 88292 1hw7A 255 8.94e+01 1i7fA d.193.1.1 61297 2a90A 240 8.97e+01 2bcfA 276 8.98e+01