# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fjrA 195 1.00e+00 1fjrA b.102.1.1 59855 2cjtA 131 1.20e+00 1o0sA 605 2.36e+00 c.2.1.7,c.58.1.3 86540,86541 1ly1A 181 2.50e+00 c.37.1.1 74334 1ltqA 301 3.85e+00 c.108.1.9,c.37.1.1 78208,78209 1mwwA 128 6.38e+00 d.80.1.4 91483 1tu1A 148 6.93e+00 d.107.1.3 107316 2gj8A 172 7.58e+00 1pyaB 228 7.61e+00 1pyaB 1f5mA 180 7.66e+00 1f5mB d.110.2.1 40895 1v8fA 276 8.60e+00 c.26.1.4 100503 1d8hA 311 9.60e+00 1d8iA d.63.1.1 39544 1y8oB 128 1.10e+01 1b65A 375 1.15e+01 1b65A d.154.1.1 42020 2bmwA 304 1.15e+01 1ogiA 303 1.16e+01 b.43.4.2,c.25.1.1 92914,92915 1ebfA 358 1.27e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1gppA 237 1.29e+01 b.86.1.2 76262 3sil 379 1.35e+01 3sil b.68.1.1 27542 1dkzA 219 1.41e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1aym3 238 1.42e+01 1aym3 3proC 166 1.60e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1g55A 343 1.70e+01 1g55A c.66.1.26 34247 1gdvA 85 1.73e+01 1ctj a.3.1.1 60458 2bjuA 453 1.73e+01 2axyA 73 1.82e+01 1vj2A 126 1.87e+01 b.82.1.10 100796 1jxcA 68 1.93e+01 g.3.7.5 77201 2b18A 164 2.04e+01 1sxvA 172 2.04e+01 1xkzA 255 2.27e+01 1jltB 122 2.29e+01 a.133.1.2 66868 1hleA 345 2.34e+01 1ovaA e.1.1.1 42618 1dmhA 311 2.53e+01 1dmhA b.3.6.1 22633 1ex7A 186 2.66e+01 1gky c.37.1.1 59537 1gky 187 2.70e+01 1gky c.37.1.1 31839 2bokA 241 2.82e+01 2b6nA 278 2.98e+01 1bx1A 314 3.05e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1cl8A 276 3.05e+01 1ckqA c.52.1.1 33230 2cz2A 223 3.14e+01 2cfxA 144 3.16e+01 1y5eA 169 3.16e+01 1fnd 314 3.17e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1twuA 139 3.22e+01 d.32.1.8 107413 1xl3C 92 3.24e+01 1kdj 102 3.43e+01 1plc b.6.1.1 22864 2f1lA 187 3.44e+01 1ocxA 182 3.45e+01 b.81.1.3 86814 1yzfA 195 3.53e+01 1h8eH 146 3.57e+01 1e79H b.93.1.1 60757 1f28A 297 3.69e+01 1bkpA d.117.1.1 59608 2ervA 150 3.70e+01 1fxoA 293 3.75e+01 1g0rA c.68.1.6 34524 1dp4A 435 3.81e+01 1dp4A c.93.1.1 35710 1o0iA 138 3.81e+01 d.38.1.5 86532 2c52B 59 3.82e+01 1m7vA 363 3.83e+01 d.174.1.1 78748 2blkA 122 3.90e+01 1qksA 567 3.96e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2d4rA 147 3.96e+01 4dfrA 159 4.00e+01 1vdrA c.71.1.1 34822 1ctj 89 4.07e+01 1ctj a.3.1.1 15798 1bb9 115 4.16e+01 1bb9 b.34.2.1 24554 2cwsA 237 4.28e+01 2cyeA 133 4.34e+01 2b1xA 470 4.41e+01 1x82A 190 4.43e+01 1ra9 159 4.70e+01 1vdrA c.71.1.1 34820 2fmlA 273 4.72e+01 2a90A 240 4.76e+01 1m0wA 491 4.77e+01 c.30.1.4,d.142.1.6 78363,78364 1dq3A 454 4.84e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1b9wA 89 4.90e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1ryoA 327 4.91e+01 c.94.1.2 98108 1w2lA 99 5.06e+01 1g2qA 187 5.07e+01 c.61.1.1 65117 2d93A 134 5.11e+01 1vh4A 435 5.22e+01 b.80.6.1 100640 1xd3A 230 5.23e+01 1eljA 381 5.26e+01 4mbp c.94.1.1 35791 1prxA 224 5.36e+01 1prxA c.47.1.10 33076 1b6rA 355 5.37e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1vj0A 380 5.38e+01 b.35.1.2,c.2.1.1 100786,100787 1fadA 99 5.44e+01 1fadA a.77.1.2 18428 2ff4A 388 5.69e+01 1ifrA 121 5.76e+01 b.1.16.1 71203 1rliA 184 5.76e+01 c.23.5.6 97647 1fmb 104 5.79e+01 1fmb b.50.1.1 26777 1ze3D 125 5.88e+01 1xg8A 111 5.89e+01 1sh8A 154 5.90e+01 d.38.1.5 105549 1dysA 348 5.96e+01 1bvwA c.6.1.1 30669 2bkyA 97 5.97e+01 1mrzA 293 6.02e+01 b.43.5.1,c.26.1.3 91452,91453 1sviA 195 6.13e+01 c.37.1.8 106048 2gcuA 245 6.14e+01 1bkjA 240 6.21e+01 1bkjA d.90.1.1 40243 2a9dA 372 6.30e+01 1w96A 554 6.31e+01 1rwiA 270 6.36e+01 b.68.9.1 97987 1qh4A 380 6.61e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1y8qB 640 6.69e+01 1rlw 126 6.84e+01 1rlw b.7.1.1 23177 2dbbA 151 6.85e+01 1h12A 405 7.15e+01 a.102.1.2 83447 1x9gA 200 7.25e+01 c.33.1.3 109527 1u04A 771 7.31e+01 b.34.14.1,c.55.3.10 107539,107540 1b35A 260 7.59e+01 1b35A b.121.4.1 23333 1ik9A 213 7.63e+01 b.59.1.1,h.1.11.1 66176,66177 1rwyA 109 7.68e+01 a.39.1.4 98002 1uj6A 227 7.79e+01 c.124.1.4,d.58.40.1 107898,107899 1k7kA 221 7.81e+01 c.51.4.1 72104 1o1yA 239 7.81e+01 c.23.16.1 86554 2bvfA 459 7.84e+01 1hgxA 183 7.84e+01 1tc1A c.61.1.1 34027 1om4A 422 7.92e+01 d.174.1.1 87067 2a5jA 191 7.99e+01 2b20A 403 8.08e+01 2apr 325 8.10e+01 2er7E b.50.1.2 26819 1twiA 434 8.18e+01 b.49.2.3,c.1.6.1 107399,107400 2gp5A 349 8.20e+01 1qy1A 174 8.30e+01 b.60.1.1 96568 1zndA 174 8.31e+01 1t46A 313 8.33e+01 d.144.1.7 106397 1i19A 561 8.53e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1wloA 136 8.95e+01 1jyhA 157 8.95e+01 d.60.1.3 71956 1vl2A 421 9.00e+01 c.26.2.1,d.210.1.1 108708,108709