# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cjtA 131 1.01e+00 1fjrA 195 1.51e+00 1fjrA b.102.1.1 59855 1xd3A 230 1.60e+00 1mwwA 128 1.61e+00 d.80.1.4 91483 1gky 187 2.31e+00 1gky c.37.1.1 31839 1o0sA 605 2.70e+00 c.2.1.7,c.58.1.3 86540,86541 1ex7A 186 2.88e+00 1gky c.37.1.1 59537 2b1xA 470 2.95e+00 1y8oB 128 4.18e+00 1b65A 375 4.81e+00 1b65A d.154.1.1 42020 1vk0A 206 5.85e+00 c.55.3.5 100839 1jltB 122 6.51e+00 a.133.1.2 66868 1bb9 115 6.74e+00 1bb9 b.34.2.1 24554 1ocxA 182 6.95e+00 b.81.1.3 86814 2axyA 73 7.00e+00 2b6nA 278 7.41e+00 1cjxA 357 7.57e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 1bx1A 314 7.73e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1ifrA 121 7.81e+00 b.1.16.1 71203 1ik9A 213 8.60e+00 b.59.1.1,h.1.11.1 66176,66177 2bmwA 304 9.63e+00 1fnd 314 1.00e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1dy9A 187 1.00e+01 1jxpA b.47.1.3 26400 1ogiA 303 1.03e+01 b.43.4.2,c.25.1.1 92914,92915 1pyaB 228 1.17e+01 1pyaB 1dp4A 435 1.41e+01 1dp4A c.93.1.1 35710 1d8hA 311 1.43e+01 1d8iA d.63.1.1 39544 1ltqA 301 1.62e+01 c.108.1.9,c.37.1.1 78208,78209 1e19A 314 1.70e+01 1b7bA c.73.1.1 34967 2fmlA 273 1.80e+01 1udc 338 1.84e+01 1xel c.2.1.2 29785 2bopA 85 1.85e+01 2bopA d.58.8.1 39217 1x9gA 200 1.95e+01 c.33.1.3 109527 1y43B 173 1.97e+01 1eljA 381 2.04e+01 4mbp c.94.1.1 35791 3sil 379 2.07e+01 3sil b.68.1.1 27542 1kdj 102 2.19e+01 1plc b.6.1.1 22864 1j1bA 420 2.21e+01 d.144.1.7 90758 1g55A 343 2.23e+01 1g55A c.66.1.26 34247 1ryoA 327 2.31e+01 c.94.1.2 98108 1w2lA 99 2.31e+01 1xkzA 255 2.42e+01 1yn4A 99 2.48e+01 1gppA 237 2.55e+01 b.86.1.2 76262 1xg8A 111 2.56e+01 2fp7B 172 2.57e+01 1xl3C 92 2.57e+01 1kte 105 2.61e+01 1kte c.47.1.1 32771 2gj8A 172 2.63e+01 1i19A 561 2.64e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1ly1A 181 2.65e+01 c.37.1.1 74334 1mwmA 320 2.71e+01 c.55.1.1,c.55.1.1 79580,79581 1dbhA 354 2.71e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1rliA 184 2.71e+01 c.23.5.6 97647 1dkzA 219 2.73e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1fadA 99 2.85e+01 1fadA a.77.1.2 18428 1g2qA 187 2.86e+01 c.61.1.1 65117 1vd5A 377 2.87e+01 a.102.1.7 108518 2a9dA 372 2.93e+01 1sxvA 172 2.98e+01 2f1rA 171 3.01e+01 2fimA 276 3.08e+01 1gcqC 70 3.13e+01 1gcpA b.34.2.1 60436 1rlw 126 3.13e+01 1rlw b.7.1.1 23177 1tu1A 148 3.15e+01 d.107.1.3 107316 1g8aA 227 3.19e+01 c.66.1.3 90506 2d4rA 147 3.22e+01 1f5mA 180 3.27e+01 1f5mB d.110.2.1 40895 1fmb 104 3.30e+01 1fmb b.50.1.1 26777 2cu3A 64 3.45e+01 1sbzA 197 3.61e+01 2c5qA 240 3.61e+01 1rq2A 382 3.61e+01 c.32.1.1,d.79.2.1 105048,105049 1fuiA 591 3.62e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1f06A 320 3.63e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1ywnA 316 3.66e+01 1k0eA 453 3.75e+01 d.161.1.1 67938 1x82A 190 3.78e+01 3proC 166 3.95e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1w85A 368 3.97e+01 1wloA 136 4.02e+01 2cz2A 223 4.07e+01 1xtmA 175 4.07e+01 1y5eA 169 4.08e+01 2f1lA 187 4.09e+01 2f7tA 227 4.11e+01 2bh8A 101 4.22e+01 1bw0A 416 4.32e+01 1bw0A c.67.1.1 34385 1r8oB 71 4.35e+01 2czdA 208 4.45e+01 1vpqA 273 4.47e+01 1zj8A 566 4.49e+01 1a4iA 301 4.53e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1za7A 165 4.59e+01 1ulrA 88 4.66e+01 2hf9A 226 4.87e+01 2bhgA 209 4.91e+01 2blkA 122 4.95e+01 1hleA 345 5.06e+01 1ovaA e.1.1.1 42618 1rwiA 270 5.10e+01 b.68.9.1 97987 1gy8A 397 5.13e+01 c.2.1.2 83376 1cruA 454 5.16e+01 1c9uA b.68.2.1 27617 1mnnA 340 5.26e+01 b.2.5.7 79324 1s4iA 175 5.28e+01 1gdvA 85 5.30e+01 1ctj a.3.1.1 60458 1fdr 248 5.37e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1o59A 355 5.39e+01 b.18.1.22,b.18.1.22 92495,92496 2fv1A 377 5.43e+01 1to4A 156 5.68e+01 b.1.8.1 107162 1aym3 238 5.73e+01 1aym3 1dm9A 133 5.83e+01 1dm9A d.66.1.3 39560 1ignA 246 5.89e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1vl2A 421 6.08e+01 c.26.2.1,d.210.1.1 108708,108709 1w0pA 781 6.14e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1dcoA 104 6.17e+01 1dcpA d.74.1.1 39680 1rybA 212 6.30e+01 c.56.3.1 98098 1zndA 174 6.33e+01 1n97A 389 6.38e+01 a.104.1.1 80335 1po5A 476 6.39e+01 a.104.1.1 94963 1gci 269 6.44e+01 1gci c.41.1.1 32503 1v3vA 333 6.44e+01 b.35.1.2,c.2.1.1 108345,108346 4dfrA 159 6.62e+01 1vdrA c.71.1.1 34822 1ze3D 125 6.64e+01 2bkyA 97 6.65e+01 1m2tB 263 6.66e+01 b.42.2.1,b.42.2.1 84762,84763 1t61A 229 6.84e+01 d.169.1.6,d.169.1.6 106529,106530 1qy1A 174 6.97e+01 b.60.1.1 96568 1p5vB 147 7.03e+01 b.2.3.2 87814 1jpaA 312 7.06e+01 d.144.1.7 67011 1nqeA 594 7.07e+01 f.4.3.3 86027 2c0nA 203 7.08e+01 1tuaA 191 7.18e+01 d.51.1.1,d.51.1.1 107321,107322 2f2eA 146 7.22e+01 1jetA 517 7.25e+01 1jevA c.94.1.1 35718 1jmcA 246 7.27e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 2bycA 137 7.30e+01 1xfpA 142 7.31e+01 b.1.1.1 109587 1vp4A 425 7.33e+01 2ch4A 320 7.40e+01 1wxxA 382 7.46e+01 1wddS 128 7.49e+01 1rwrA 301 7.51e+01 b.80.1.11 97990 1jp4A 308 7.53e+01 1jp4A e.7.1.1 63223 2b18A 164 7.62e+01 2cviA 83 7.82e+01 1naqA 112 7.86e+01 d.58.5.2 91761 2gtqA 867 8.01e+01 2dc4A 165 8.13e+01 1ryp1 222 8.27e+01 1ryp1 1ru4A 400 8.37e+01 b.80.1.9 97836 1kwgA 645 8.43e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1o4tA 133 8.57e+01 b.82.1.9 86622 1b6rA 355 8.59e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1to2E 281 8.60e+01 2ervA 150 8.68e+01 1q15A 503 8.81e+01 c.26.2.1,d.153.1.1 95538,95539 1umwA 237 8.81e+01 d.223.1.2,d.223.1.2 99631,99632 1v8fA 276 8.82e+01 c.26.1.4 100503 1vjkA 98 8.84e+01 d.15.3.1 108631 1h8eH 146 8.85e+01 1e79H b.93.1.1 60757 1lktA 104 8.94e+01 1lktA b.90.1.1 28398 1tig 94 8.99e+01 1tig d.68.1.1 39566