# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cjtA 131 5.69e-01 2eboA 74 1.51e+00 2eboA h.3.2.1 45754 1ikoP 178 3.33e+00 b.6.1.5 71243 2h2tB 175 3.63e+00 1ex7A 186 4.09e+00 1gky c.37.1.1 59537 1gky 187 4.43e+00 1gky c.37.1.1 31839 1xd3A 230 6.82e+00 2cfxA 144 8.11e+00 1jxcA 68 8.66e+00 g.3.7.5 77201 1ltqA 301 9.10e+00 c.108.1.9,c.37.1.1 78208,78209 1dxrH 258 9.21e+00 6prcH b.41.1.1,f.23.10.1 25456,43433 1ly1A 181 9.25e+00 c.37.1.1 74334 2dbbA 151 9.52e+00 1ifrA 121 9.57e+00 b.1.16.1 71203 1vj2A 126 1.25e+01 b.82.1.10 100796 1hlb 158 1.28e+01 1hlb a.1.1.2 15625 1pyaB 228 1.33e+01 1pyaB 1f06A 320 1.34e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1y8oB 128 1.88e+01 2azeA 155 1.89e+01 2c52B 59 1.96e+01 1t0fC 54 2.06e+01 1bh9B 89 2.37e+01 1bh9B a.22.1.3 16485 1qbzA 123 2.37e+01 1qbzA h.3.2.1 45729 1x6iA 91 2.58e+01 1yn4A 99 2.81e+01 1s4iA 175 2.81e+01 1vbkA 307 2.94e+01 1twuA 139 2.98e+01 d.32.1.8 107413 1xtmA 175 3.00e+01 1gdvA 85 3.11e+01 1ctj a.3.1.1 60458 1fjgI 128 3.19e+01 1fjfI d.14.1.1 37559 1lj2A 110 3.43e+01 h.1.13.2 73926 1pc6A 146 3.51e+01 d.262.1.1 94430 2clyB 160 3.62e+01 1he7A 126 3.64e+01 1wwcA b.1.1.4 60970 1fdr 248 3.66e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1xfrA 128 3.84e+01 1o59A 355 4.12e+01 b.18.1.22,b.18.1.22 92495,92496 1mwwA 128 4.13e+01 d.80.1.4 91483 3proC 166 4.23e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1x9gA 200 4.35e+01 c.33.1.3 109527 1yemA 179 4.47e+01 1a41 234 4.88e+01 1a41 d.163.1.2 42174 1m98A 317 5.36e+01 a.175.1.1,d.17.4.6 78866,78867 1o75A 415 5.46e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1fjrA 195 5.52e+01 1fjrA b.102.1.1 59855 1mzgA 146 5.58e+01 d.224.1.1 79696 1nulA 152 5.63e+01 1nulA c.61.1.1 34011 1g4yB 101 5.74e+01 1g4yB f.15.1.1 60251 1jltB 122 5.86e+01 a.133.1.2 66868 2ctdA 96 6.09e+01 1o0sA 605 6.11e+01 c.2.1.7,c.58.1.3 86540,86541 1i3jA 116 6.25e+01 1i3jA d.285.1.1 61594 1jfzA 154 6.69e+01 a.149.1.1 66655 2h3bA 494 6.73e+01 1h8eH 146 6.98e+01 1e79H b.93.1.1 60757 1dqeA 137 7.02e+01 1dqeA a.39.2.1 17388 1zvdA 380 7.07e+01 1ve0A 134 7.23e+01 1or0B 528 7.23e+01 1vl7A 157 7.23e+01 b.45.1.1 108732 1zn8A 180 7.31e+01 1ycdA 243 7.46e+01 2cyeA 133 7.52e+01 1ze3D 125 7.63e+01 2bw3A 534 7.69e+01 2auwA 170 7.83e+01 1m0dA 138 8.01e+01 c.52.1.17 74354 2cy3 118 8.06e+01 3cyr a.138.1.1 19649 1bb9 115 8.14e+01 1bb9 b.34.2.1 24554 2ffwA 78 8.36e+01 1i2mA 216 8.36e+01 1byuA c.37.1.8 61568 2d93A 134 8.41e+01 1tuzA 118 8.45e+01 1yzvA 204 8.47e+01 1dm9A 133 8.47e+01 1dm9A d.66.1.3 39560 1wyuA 438 8.63e+01 1owfA 99 8.72e+01 a.55.1.1 87487 1lnwA 147 8.78e+01 a.4.5.28 78104