# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rtfB 252 8.35e-02 5ptp 1fjrA 195 1.15e+00 1fjrA b.102.1.1 59855 1ly1A 181 1.64e+00 c.37.1.1 74334 1f5mA 180 2.54e+00 1f5mB d.110.2.1 40895 1tu1A 148 2.88e+00 d.107.1.3 107316 1v8fA 276 3.40e+00 c.26.1.4 100503 1b65A 375 3.78e+00 1b65A d.154.1.1 42020 1ltqA 301 4.31e+00 c.108.1.9,c.37.1.1 78208,78209 1d8hA 311 4.79e+00 1d8iA d.63.1.1 39544 2b18A 164 5.63e+00 1ebfA 358 5.86e+00 1ebuA c.2.1.3,d.81.1.2 30033,39948 1y8oB 128 6.12e+00 3proC 166 6.74e+00 3proC d.52.1.1,d.52.1.1 38812,38813 1sxvA 172 6.99e+00 1c8zA 265 7.57e+00 1c8zA d.23.1.1 38375 1s31A 273 7.79e+00 3mddA 385 8.08e+00 3mdeA a.29.3.1,e.6.1.1 16592,42853 1qxrA 189 8.38e+00 b.82.1.7 96552 1o0sA 605 8.38e+00 c.2.1.7,c.58.1.3 86540,86541 1mwwA 128 8.54e+00 d.80.1.4 91483 1x82A 190 8.84e+00 1ex7A 186 9.34e+00 1gky c.37.1.1 59537 1f28A 297 9.39e+00 1bkpA d.117.1.1 59608 1gky 187 9.50e+00 1gky c.37.1.1 31839 1bb9 115 9.88e+00 1bb9 b.34.2.1 24554 2f1lA 187 9.99e+00 1lf2A 331 1.04e+01 b.50.1.2 77914 2bokA 241 1.06e+01 1vj0A 380 1.09e+01 b.35.1.2,c.2.1.1 100786,100787 1ocxA 182 1.17e+01 b.81.1.3 86814 1uch 230 1.24e+01 1uch d.3.1.6 37129 1aym3 238 1.25e+01 1aym3 1dkzA 219 1.26e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1mrzA 293 1.28e+01 b.43.5.1,c.26.1.3 91452,91453 1q9jA 422 1.30e+01 c.43.1.2,c.43.1.2 104590,104591 2b1xA 470 1.30e+01 1g2lA 235 1.41e+01 b.47.1.2 65112 2axyA 73 1.43e+01 1g55A 343 1.45e+01 1g55A c.66.1.26 34247 2bjuA 453 1.49e+01 1xw2A 405 1.54e+01 1kdj 102 1.54e+01 1plc b.6.1.1 22864 1pyaB 228 1.58e+01 1pyaB 1fxoA 293 1.59e+01 1g0rA c.68.1.6 34524 1xwtA 405 1.68e+01 1k4tA 592 1.76e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1dmhA 311 1.76e+01 1dmhA b.3.6.1 22633 2b20A 403 1.84e+01 1dp4A 435 1.89e+01 1dp4A c.93.1.1 35710 1rliA 184 1.91e+01 c.23.5.6 97647 3sil 379 2.16e+01 3sil b.68.1.1 27542 1iw7C 1119 2.17e+01 e.29.1.1 71474 1ryoA 327 2.19e+01 c.94.1.2 98108 1b9wA 89 2.22e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 2cwsA 237 2.36e+01 1aq0A 306 2.36e+01 1aq0A c.1.8.3 28842 1vj2A 126 2.40e+01 b.82.1.10 100796 2cjtA 131 2.52e+01 2b5oA 402 2.58e+01 1w34A 304 2.59e+01 2bmwA 304 2.59e+01 2bsaA 303 2.63e+01 1que 303 2.64e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1pvc3 238 2.65e+01 1aym3 1go2A 304 2.69e+01 b.43.4.2,c.25.1.1 76243,76244 1u1zA 168 2.69e+01 d.38.1.6 107602 1e19A 314 2.70e+01 1b7bA c.73.1.1 34967 1xl3C 92 2.72e+01 2cyeA 133 2.79e+01 1ifrA 121 2.82e+01 b.1.16.1 71203 2gj8A 172 2.86e+01 1w2lA 99 2.86e+01 1sskA 158 2.91e+01 b.148.1.1 105986 1ogiA 303 2.92e+01 b.43.4.2,c.25.1.1 92914,92915 1a8e 329 2.93e+01 1cb6A c.94.1.2 35888 1xkzA 255 2.94e+01 1fadA 99 2.97e+01 1fadA a.77.1.2 18428 2dbbA 151 3.01e+01 1xd3A 230 3.03e+01 1wxxA 382 3.05e+01 1eo9B 241 3.05e+01 3pchM b.3.6.1 22826 1gdvA 85 3.13e+01 1ctj a.3.1.1 60458 1m40A 263 3.15e+01 e.3.1.1 74437 1ermA 263 3.16e+01 1btl e.3.1.1 42690 1xa1A 255 3.17e+01 e.3.1.1 109529 2blkA 122 3.18e+01 1xg8A 111 3.19e+01 1y5eA 169 3.19e+01 1gcqC 70 3.39e+01 1gcpA b.34.2.1 60436 1ei1A 391 3.43e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1o0iA 138 3.47e+01 d.38.1.5 86532 1gppA 237 3.47e+01 b.86.1.2 76262 2arkA 188 3.57e+01 1h59B 54 3.69e+01 g.3.9.1 70881 1vh4A 435 3.79e+01 b.80.6.1 100640 1btl 263 3.82e+01 1btl e.3.1.1 42691 1h12A 405 3.84e+01 a.102.1.2 83447 2a6hC 1119 3.87e+01 1i19A 561 3.92e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1x9gA 200 3.94e+01 c.33.1.3 109527 1mwmA 320 4.09e+01 c.55.1.1,c.55.1.1 79580,79581 1tmxA 293 4.22e+01 2as0A 396 4.24e+01 1ois 223 4.27e+01 1a36A e.15.1.1 43267 1zgoA 223 4.32e+01 1ggxA 223 4.34e+01 1ggxA d.22.1.1 38367 1o1yA 239 4.36e+01 c.23.16.1 86554 2cz2A 223 4.41e+01 2cfxA 144 4.44e+01 1jltB 122 4.46e+01 a.133.1.2 66868 1zq4A 693 4.46e+01 1y7rA 133 4.50e+01 1yzfA 195 4.53e+01 1xneA 113 4.62e+01 1prxA 224 4.68e+01 1prxA c.47.1.10 33076 2b6eA 146 4.79e+01 1m0wA 491 4.85e+01 c.30.1.4,d.142.1.6 78363,78364 1wdvA 152 4.85e+01 1cl8A 276 4.87e+01 1ckqA c.52.1.1 33230 1wkaA 147 4.91e+01 1b8aA 438 5.01e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2faoA 309 5.01e+01 1bs0A 384 5.21e+01 1bs0A c.67.1.4 34490 1e79H 146 5.23e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 2cviA 83 5.23e+01 1ctj 89 5.30e+01 1ctj a.3.1.1 15798 1k7kA 221 5.31e+01 c.51.4.1 72104 1rlw 126 5.50e+01 1rlw b.7.1.1 23177 1mv3A 213 5.50e+01 b.34.2.1 91468 2bkyA 97 5.53e+01 1res 43 5.55e+01 1ret a.4.1.2 16023 1vrpA 381 5.78e+01 1fuiA 591 5.81e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1wcqA 601 5.87e+01 1udc 338 5.92e+01 1xel c.2.1.2 29785 1vm6A 228 5.93e+01 c.2.1.3,d.81.1.3 108876,108877 1vk0A 206 5.99e+01 c.55.3.5 100839 1soxA 466 6.06e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1xel 338 6.06e+01 1xel c.2.1.2 29786 3pcgA 200 6.07e+01 3pchA b.3.6.1 22647 1jae 471 6.17e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1t46A 313 6.18e+01 d.144.1.7 106397 1gw0A 559 6.27e+01 b.6.1.3,b.6.1.3,b.6.1.3 70623,70624,70625 1u04A 771 6.30e+01 b.34.14.1,c.55.3.10 107539,107540 1aokB 122 6.33e+01 1poa a.133.1.2 19561 1kutA 230 6.33e+01 d.143.1.1 73017 1f39A 101 6.34e+01 1umuA b.87.1.1 28386 1ze3D 125 6.34e+01 1sddA 306 6.38e+01 b.6.1.3,b.6.1.3 105431,105432 1jv4A 162 6.44e+01 b.60.1.1 67343 1zndA 174 6.50e+01 1i06A 180 6.51e+01 1mup b.60.1.1 27131 1qy1A 174 6.51e+01 b.60.1.1 96568 1fnc 314 6.52e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1xhbA 472 6.52e+01 1dixA 208 6.53e+01 1bk7A d.124.1.1 41122 2blcA 238 6.54e+01 1i05A 180 6.55e+01 1mup b.60.1.1 27130 1mup 166 6.58e+01 1mup b.60.1.1 27133 1fu1A 203 6.59e+01 1fu1B b.59.1.1,h.1.11.1 27076,45630 1fjgB 256 6.59e+01 1fjfB c.23.15.1 31400 1h0xA 100 6.63e+01 d.68.6.1 76451 2cglA 489 6.66e+01 1vhoA 346 6.88e+01 b.49.3.1,c.56.5.4 100694,100695 2a9dA 372 6.90e+01 1zj8A 566 6.99e+01 1epaA 164 7.00e+01 1epaA b.60.1.1 27128 1j83A 180 7.15e+01 b.18.1.12 66430 1rq2A 382 7.21e+01 c.32.1.1,d.79.2.1 105048,105049 1wd3A 482 7.22e+01 b.29.1.21,b.42.8.1 109233,109234 1uyrA 737 7.24e+01 c.14.1.4,c.14.1.4 100188,100189 1xtlA 175 7.33e+01 1vl2A 421 7.40e+01 c.26.2.1,d.210.1.1 108708,108709 2b4wA 315 7.44e+01 1l6sA 323 7.45e+01 c.1.10.3 73627 2d4rA 147 7.50e+01 1jyhA 157 7.54e+01 d.60.1.3 71956 1x0vA 354 7.56e+01 2aw5A 541 7.59e+01 1ppjB 439 7.60e+01 d.185.1.1,d.185.1.1 104254,104255 1ub1A 133 7.62e+01 d.10.1.3 99140 1hleA 345 7.62e+01 1ovaA e.1.1.1 42618 1b6rA 355 7.66e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1sbzA 197 7.68e+01 1w2xA 758 7.71e+01 c.14.1.4,c.14.1.4 109134,109135 2ausB 60 7.91e+01 1cf2O 337 7.91e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1bx1A 314 7.96e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1y6hA 177 8.00e+01 1g2qA 187 8.03e+01 c.61.1.1 65117 1yn4A 99 8.05e+01 1g6oA 330 8.12e+01 1g6oA c.37.1.11 32430 1y4wA 518 8.19e+01 1m7sA 484 8.21e+01 e.5.1.1 74574 3aprE 325 8.23e+01 2er7E b.50.1.2 26820 2apr 325 8.29e+01 2er7E b.50.1.2 26819 1tocR 120 8.36e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1tvdA 116 8.41e+01 1tvdA b.1.1.1 20650 1bj7 156 8.42e+01 1bj7 b.60.1.1 27113 2bkqA 212 8.44e+01 1w8oA 601 8.46e+01 1eljA 381 8.46e+01 4mbp c.94.1.1 35791 1wloA 136 8.49e+01 2bvfA 459 8.49e+01 1led 243 8.58e+01 1led b.29.1.1 24039 1w96A 554 8.62e+01 1tuaA 191 8.71e+01 d.51.1.1,d.51.1.1 107321,107322 1nciA 110 8.73e+01 1edhA b.1.6.1 22191 1dbxA 158 8.75e+01 1dbuA d.116.1.1 40928 1ik9A 213 8.88e+01 b.59.1.1,h.1.11.1 66176,66177 1f3aA 222 8.91e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1cjwA 166 8.96e+01 1cjwA d.108.1.1 40818