# List of top-scoring protein chains for t04-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mwwA 128 1.43e+00 d.80.1.4 91483 1xd3A 230 1.50e+00 1fjrA 195 1.60e+00 1fjrA b.102.1.1 59855 1gky 187 1.72e+00 1gky c.37.1.1 31839 1ex7A 186 2.27e+00 1gky c.37.1.1 59537 2b1xA 470 2.65e+00 1o0sA 605 3.08e+00 c.2.1.7,c.58.1.3 86540,86541 2b5oA 402 3.79e+00 1aokB 122 3.96e+00 1poa a.133.1.2 19561 1uch 230 4.15e+00 1uch d.3.1.6 37129 1y8oB 128 4.27e+00 1bb9 115 5.67e+00 1bb9 b.34.2.1 24554 1fu1A 203 5.88e+00 1fu1B b.59.1.1,h.1.11.1 27076,45630 1cjxA 357 5.91e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 2axyA 73 6.01e+00 1vk0A 206 6.17e+00 c.55.3.5 100839 1b65A 375 6.28e+00 1b65A d.154.1.1 42020 1fnc 314 6.82e+00 1fnc b.43.4.2,c.25.1.1 25627,31517 1ifrA 121 7.46e+00 b.1.16.1 71203 1ik9A 213 7.62e+00 b.59.1.1,h.1.11.1 66176,66177 1bx1A 314 7.65e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1que 303 7.75e+00 1fnc b.43.4.2,c.25.1.1 25647,31537 1w34A 304 8.01e+00 1soxA 466 8.25e+00 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1ocxA 182 8.25e+00 b.81.1.3 86814 2bsaA 303 8.42e+00 1jltB 122 8.59e+00 a.133.1.2 66868 2b6nA 278 9.11e+00 1dy9A 187 9.47e+00 1jxpA b.47.1.3 26400 1fnd 314 9.86e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 1gw0A 559 1.09e+01 b.6.1.3,b.6.1.3,b.6.1.3 70623,70624,70625 1s31A 273 1.18e+01 1h59B 54 1.26e+01 g.3.9.1 70881 1go2A 304 1.30e+01 b.43.4.2,c.25.1.1 76243,76244 1d8hA 311 1.31e+01 1d8iA d.63.1.1 39544 1ogiA 303 1.37e+01 b.43.4.2,c.25.1.1 92914,92915 1e19A 314 1.61e+01 1b7bA c.73.1.1 34967 1pyaB 228 1.64e+01 1pyaB 2fmlA 273 1.65e+01 1eljA 381 1.76e+01 4mbp c.94.1.1 35791 1rtfB 252 1.77e+01 5ptp 1y43B 173 1.80e+01 1x9gA 200 1.94e+01 c.33.1.3 109527 2bopA 85 1.96e+01 2bopA d.58.8.1 39217 2agcA 162 2.04e+01 1dp4A 435 2.08e+01 1dp4A c.93.1.1 35710 1xel 338 2.17e+01 1xel c.2.1.2 29786 1xkzA 255 2.23e+01 1w25A 459 2.29e+01 1xg8A 111 2.32e+01 1ltqA 301 2.36e+01 c.108.1.9,c.37.1.1 78208,78209 2a9dA 372 2.43e+01 1udc 338 2.48e+01 1xel c.2.1.2 29785 2fp7B 172 2.50e+01 1dkzA 219 2.51e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1w2lA 99 2.60e+01 1btl 263 2.63e+01 1btl e.3.1.1 42691 1xl3C 92 2.64e+01 1j1bA 420 2.67e+01 d.144.1.7 90758 1kdj 102 2.68e+01 1plc b.6.1.1 22864 1c8zA 265 2.72e+01 1c8zA d.23.1.1 38375 1ymzA 43 2.84e+01 1gcqC 70 2.84e+01 1gcpA b.34.2.1 60436 1rlw 126 2.87e+01 1rlw b.7.1.1 23177 1binB 143 2.88e+01 2gdm a.1.1.2 15232 1mwmA 320 2.88e+01 c.55.1.1,c.55.1.1 79580,79581 2f1rA 171 2.94e+01 1kte 105 2.94e+01 1kte c.47.1.1 32771 1g8aA 227 2.98e+01 c.66.1.3 90506 1xa1A 255 3.05e+01 e.3.1.1 109529 2blcA 238 3.08e+01 1fuiA 591 3.08e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1sesA 421 3.10e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 1yn4A 99 3.12e+01 1g55A 343 3.20e+01 1g55A c.66.1.26 34247 1ryoA 327 3.20e+01 c.94.1.2 98108 1f06A 320 3.21e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1x82A 190 3.21e+01 1qxrA 189 3.24e+01 b.82.1.7 96552 1gppA 237 3.33e+01 b.86.1.2 76262 3sil 379 3.35e+01 3sil b.68.1.1 27542 1sxvA 172 3.41e+01 2atvA 196 3.43e+01 2bhgA 209 3.44e+01 1fadA 99 3.50e+01 1fadA a.77.1.2 18428 1rliA 184 3.53e+01 c.23.5.6 97647 3proC 166 3.54e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1tu1A 148 3.62e+01 d.107.1.3 107316 1q9jA 422 3.67e+01 c.43.1.2,c.43.1.2 104590,104591 1i19A 561 3.71e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2czdA 208 3.81e+01 1a8e 329 3.84e+01 1cb6A c.94.1.2 35888 2cz2A 223 3.85e+01 1ly1A 181 3.86e+01 c.37.1.1 74334 1xtlA 175 3.91e+01 1c4kA 730 3.91e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1bw0A 416 3.94e+01 1bw0A c.67.1.1 34385 1wr3A 36 3.98e+01 2f7tA 227 4.02e+01 1vd5A 377 4.02e+01 a.102.1.7 108518 1ywnA 316 4.03e+01 1sbzA 197 4.04e+01 2fimA 276 4.06e+01 1dbhA 354 4.15e+01 1awe a.87.1.1,b.55.1.1 18514,26967 2f1lA 187 4.20e+01 1qorA 327 4.22e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1w85A 368 4.24e+01 1jxpA 186 4.30e+01 1jxpA b.47.1.3 26402 2d4rA 147 4.51e+01 1r8oB 71 4.63e+01 1a4iA 301 4.68e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1rq2A 382 4.68e+01 c.32.1.1,d.79.2.1 105048,105049 1rm4A 337 4.69e+01 c.2.1.3,d.81.1.1 105000,105001 1zj8A 566 4.77e+01 1aym3 238 4.80e+01 1aym3 1ermA 263 4.81e+01 1btl e.3.1.1 42690 1f5mA 180 4.88e+01 1f5mB d.110.2.1 40895 1g2qA 187 4.97e+01 c.61.1.1 65117 1xtmA 175 4.97e+01 1dm9A 133 5.00e+01 1dm9A d.66.1.3 39560 1g0hA 252 5.23e+01 1dk4A e.7.1.1 60171 1rwiA 270 5.33e+01 b.68.9.1 97987 1zyeA 220 5.39e+01 1cruA 454 5.40e+01 1c9uA b.68.2.1 27617 2bkqA 212 5.44e+01 1s4iA 175 5.46e+01 1y5eA 169 5.49e+01 1a05A 358 5.50e+01 1cnzA c.77.1.1 35059 1ze3D 125 5.52e+01 1vl2A 421 5.57e+01 c.26.2.1,d.210.1.1 108708,108709 1zndA 174 5.60e+01 1ulrA 88 5.62e+01 1k0eA 453 5.77e+01 d.161.1.1 67938 1vpqA 273 5.79e+01 1vm6A 228 5.83e+01 c.2.1.3,d.81.1.3 108876,108877 1fmb 104 5.83e+01 1fmb b.50.1.1 26777 1wddS 128 5.91e+01 1m2tB 263 5.92e+01 b.42.2.1,b.42.2.1 84762,84763 1wloA 136 5.92e+01 2b18A 164 6.01e+01 1o59A 355 6.06e+01 b.18.1.22,b.18.1.22 92495,92496 4dfrA 159 6.09e+01 1vdrA c.71.1.1 34822 1g6oA 330 6.12e+01 1g6oA c.37.1.11 32430 1w0pA 781 6.14e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1za7A 165 6.14e+01 2blkA 122 6.17e+01 1qy1A 174 6.19e+01 b.60.1.1 96568 1v3vA 333 6.29e+01 b.35.1.2,c.2.1.1 108345,108346 1sup 275 6.46e+01 1gci c.41.1.1 32510 1to4A 156 6.56e+01 b.1.8.1 107162 1eo9B 241 6.59e+01 3pchM b.3.6.1 22826 1miwA 404 6.62e+01 a.173.1.1,d.218.1.4 79162,79163 1po5A 476 6.88e+01 a.104.1.1 94963 1fjgB 256 6.93e+01 1fjfB c.23.15.1 31400 2bh8A 101 6.94e+01 2b6eA 146 6.96e+01 1lw6E 281 6.97e+01 c.41.1.1 74293 1gci 269 6.98e+01 1gci c.41.1.1 32503 1xhbA 472 7.05e+01 1tuaA 191 7.05e+01 d.51.1.1,d.51.1.1 107321,107322 1gdvA 85 7.08e+01 1ctj a.3.1.1 60458 1vp4A 425 7.09e+01 1nqeA 594 7.10e+01 f.4.3.3 86027 1p5vB 147 7.13e+01 b.2.3.2 87814 1n97A 389 7.14e+01 a.104.1.1 80335 1sh7A 284 7.15e+01 1jv4A 162 7.24e+01 b.60.1.1 67343 1hleA 345 7.47e+01 1ovaA e.1.1.1 42618 2f2eA 146 7.58e+01 1usuA 260 7.61e+01 d.14.1.8 99885 1mnnA 340 7.66e+01 b.2.5.7 79324 2c5qA 240 7.69e+01 1fdr 248 7.69e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1v8fA 276 7.78e+01 c.26.1.4 100503 1gx5A 536 7.93e+01 e.8.1.4 70682 1h0xA 100 8.09e+01 d.68.6.1 76451 1ra9 159 8.12e+01 1vdrA c.71.1.1 34820 1rybA 212 8.19e+01 c.56.3.1 98098 1jpaA 312 8.19e+01 d.144.1.7 67011 1ignA 246 8.21e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1u0tA 307 8.39e+01 e.52.1.1 107567 1gy8A 397 8.49e+01 c.2.1.2 83376 1wxxA 382 8.49e+01 1qy5A 269 8.51e+01 d.122.1.1 96573 1nciA 110 8.55e+01 1edhA b.1.6.1 22191 1m40A 263 8.58e+01 e.3.1.1 74437 2bycA 137 8.61e+01 1ov3A 138 8.61e+01 b.34.2.1,b.34.2.1 87451,87452 1o4tA 133 8.62e+01 b.82.1.9 86622 1h4xA 117 8.63e+01 1auz c.13.2.1 60626 2eifA 136 8.68e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1jmcA 246 8.73e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1ikoP 178 8.76e+01 b.6.1.5 71243 1xdpA 687 8.79e+01 2bkyA 97 8.80e+01 1g0uL 241 8.81e+01 d.153.1.4 41894 1sz6B 263 8.82e+01 1x6mA 196 8.91e+01 1lf2A 331 8.96e+01 b.50.1.2 77914 1i05A 180 8.99e+01 1mup b.60.1.1 27130