CreatePredAlphaCost pred_alpha2k alpha11 T0283.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0283.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 25 dry8 20 	dry12 10 \
	phobic_fit 2 \
	sidechain 5 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 5 \
	pred_alpha04 5 \
	constraints 10 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 

# from T0283.dssp-ehl2.constraints
# HelixConstraint 	F3	K25	0.682
# HelixConstraint 	K29	T44	0.7839
# HelixConstraint 	W51	A70	0.7193
# HelixConstraint 	T76	D77	0.6175
# HelixConstraint 	V83	D93	0.7024
# HelixConstraint 	M98	L105	0.6139

# split the first helix constraint
HelixConstraint 	F3	L11	07.00
HelixConstraint 	K14	K25	08.17

# shrink the second helix to higher-confidence region
HelixConstraint 	K29	W43	08.574

HelixConstraint 	W51	A70	07.193

# eliminate tiny 3-10 helix (V75-D77)
# HelixConstraint 	T76	D77	06.175

# shrink next helix to high-confidence region
HelixConstraint 	V83	K92	08.259

# shrink last helix to high-confidence region
HelixConstraint 	K100	L105	07.202


# Constraints from rr.constraints, selected by hand
Constraint F65.CB F86.CB -10. 7.0 14.0 0.875476
Constraint L62.CB L90.CB -10. 7.0 14.0 0.876761

Constraint L27.CB I38.CB -10. 7.0 14.0 0.891394
Constraint A24.CB I38.CB -10. 7.0 14.0 0.890471

Constraint M42.CB I57.CB -10. 7.0 14.0 0.888313