CreatePredAlphaCost pred_alpha2k alpha11 T0283.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0283.t04.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 25 dry8 15 dry12 10 \ phobic_fit 4 \ sidechain 8 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 40 backbone_clashes 2 \ break 100 \ pred_alpha2k 4 \ pred_alpha04 4 \ hbond_geom 5 \ hbond_geom_backbone 10 \ missing_atoms 1 # No reward for beta sheets in THIS protein # hbond_geom_beta 50 \ # hbond_geom_beta_pair 100