# List of top-scoring protein chains for T0283.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iruB 233 2.51e+00 d.153.1.4 71353 1grj 158 3.71e+00 1grj a.2.1.1,d.26.1.2 15691,38433 1b8zA 90 4.83e+00 1huuA a.55.1.1 17902 1nq4A 95 4.97e+00 a.28.1.1 92045 1riyA 90 5.98e+00 1wrjA 156 7.51e+00 1vjnA 220 9.37e+00 d.157.1.4 100825 1tffA 234 1.12e+01 d.3.1.11 106854 1i3kA 348 1.36e+01 1xel c.2.1.2 61595 1x94A 191 1.42e+01 c.80.1.3 109522 1ek6A 348 1.45e+01 1xel c.2.1.2 29800 2abl 163 1.54e+01 1bbzA b.34.2.1,d.93.1.1 24481,40525 1hzjA 348 1.60e+01 1xel c.2.1.2 61450 1wkpA 171 1.64e+01 1tc6A 236 1.69e+01 d.122.1.1 106756 1wc3A 219 1.73e+01 1qy5A 269 1.86e+01 d.122.1.1 96573 1u0yA 273 1.88e+01 1or4A 178 1.91e+01 a.1.1.2 93447 2bwtA 440 2.01e+01 1wc1A 226 2.13e+01 1wacA 662 2.19e+01 1uvjA 664 2.21e+01 e.8.1.6 100045 1puiA 210 2.26e+01 c.37.1.8 88292 1xnaA 183 2.30e+01 1xnaA b.18.1.8 23773 2bwyA 440 2.31e+01 1jaw 440 2.34e+01 1az9 c.55.2.1,d.127.1.1 33549,41166 2bwwA 440 2.34e+01 1wl9A 440 2.35e+01 2bwvA 440 2.37e+01 2bwsA 440 2.41e+01 1iarB 207 2.53e+01 1iarB b.1.2.1,b.1.2.1 22037,22038 2bwxA 441 2.54e+01 1kz7A 353 2.57e+01 a.87.1.1,b.55.1.1 73333,73334 1lb1A 353 2.58e+01 a.87.1.1,b.55.1.1 73784,73785 1rj2A 353 2.58e+01 a.87.1.1,b.55.1.1 104954,104955 1kzgA 353 2.58e+01 a.87.1.1,b.55.1.1 73355,73356 1qh8B 519 2.62e+01 1qguB c.92.2.3 35634 1nnwA 252 2.76e+01 d.159.1.5 80674 2fbyA 205 2.78e+01 1y7eA 458 2.81e+01 2bh9A 489 2.86e+01 2fvhA 120 2.87e+01 2fb6A 117 3.03e+01 2essA 248 3.07e+01 2bwuA 440 3.36e+01 1qouA 181 3.43e+01 1qouA b.17.1.1 23707 1fhe 217 3.50e+01 1b8xA a.45.1.1,c.47.1.5 17726,33020 1we8A 104 3.64e+01 1z4eA 153 3.65e+01 1wg7A 150 3.68e+01 1z45A 699 4.15e+01 1p68A 102 4.22e+01 k.8.1.1 94158 1ldtL 46 4.65e+01 1tgsI g.68.1.1 44722 1ycyA 71 4.72e+01 1quwA 105 4.84e+01 1thx c.47.1.1 32735 1yz7A 188 4.85e+01 1sheA 103 4.97e+01 d.274.1.1 105551 1pztA 286 5.00e+01 c.68.1.2 95470 1zbrA 349 5.03e+01 1bwnA 169 5.05e+01 1btkA b.55.1.1 26961 1nw2A 105 5.07e+01 c.47.1.1 92215 1b55A 169 5.10e+01 1btkA b.55.1.1 26963 2fydB 286 5.10e+01 1btkA 169 5.11e+01 1btkA b.55.1.1 26959 1q8dA 108 5.15e+01 a.228.1.1 104554 1vpqA 273 5.16e+01 1brsD 89 5.20e+01 1ay7B c.9.1.1 30825 1nswA 105 5.20e+01 c.47.1.1 92097 1nmmB 286 5.21e+01 c.68.1.2 80662 1b27D 90 5.23e+01 1ay7B c.9.1.1 30840 2fycB 286 5.26e+01 1ukgA 252 5.26e+01 b.29.1.1 99489 1fr8A 288 5.28e+01 1fgxA c.68.1.2 34510 1scfA 273 5.28e+01 1exzA a.26.1.2 16873 1nf5B 286 5.29e+01 c.68.1.2 80454 1fgxA 288 5.29e+01 1fgxA c.68.1.2 34508 1lshA 1056 5.30e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2anuA 255 5.35e+01 1u8vA 490 5.37e+01 1szdA 297 5.37e+01 c.31.1.5 106150 1q17A 300 5.37e+01 c.31.1.5 95550 1x1yD 90 5.42e+01 1rqmA 105 5.43e+01 c.47.1.1 105068 1yz6A 274 5.52e+01 1exzA 141 5.52e+01 1exzA a.26.1.2 16877 1q1aA 289 5.60e+01 c.31.1.5 95561 1xewX 182 5.67e+01 1cp9A 205 5.69e+01 1ajqA d.153.1.2 41849 2fdoA 94 5.70e+01 1pwuA 776 5.73e+01 d.92.1.14,d.92.1.14,d.166.1.1 95244,95245,95246 1atx 46 5.80e+01 1ahl g.9.1.1 44600 1j7nA 776 5.92e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1jli 112 5.92e+01 1jli a.26.1.2 16884 1m1nB 522 6.00e+01 c.92.2.3 78418 1nfdF 222 6.00e+01 1igtB b.1.1.1,b.1.1.2 20187,21203 1a19A 90 6.02e+01 1ay7B c.9.1.1 30831 1g20B 523 6.02e+01 1qguB c.92.2.3 35614 1uwyA 426 6.28e+01 b.3.2.1,c.56.5.1 100130,100131 1wvlA 80 6.44e+01 1q14A 361 6.88e+01 c.31.1.5 95537 1dv4E 145 7.01e+01 i.1.1.3 45875 1kvr 338 7.01e+01 1xel c.2.1.2 29793 1udc 338 7.01e+01 1xel c.2.1.2 29785 1a9y 338 7.02e+01 1xel c.2.1.2 29789 1kvu 338 7.02e+01 1xel c.2.1.2 29794 1kvq 338 7.02e+01 1xel c.2.1.2 29797 1kvs 338 7.03e+01 1xel c.2.1.2 29799 1a9z 338 7.03e+01 1xel c.2.1.2 29795 1eg0B 148 7.04e+01 1pkp i.1.1.1 45808 1lrkA 338 7.05e+01 c.2.1.2 74225 1udb 338 7.05e+01 1xel c.2.1.2 29787 1kvt 338 7.06e+01 1xel c.2.1.2 29798 1kshA 186 7.07e+01 c.37.1.8 72914 1o0sA 605 7.08e+01 c.2.1.7,c.58.1.3 86540,86541 1wy0A 342 7.22e+01 1t13A 158 7.24e+01 1euhA 475 7.31e+01 1euhA c.82.1.1 35369 1pkp 150 7.33e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1rcqA 357 7.58e+01 b.49.2.2,c.1.6.1 104882,104883 1yd7A 395 7.64e+01 1vpmA 169 7.65e+01 1qi1A 475 7.87e+01 1euhA c.82.1.1 35381 1e6vC 258 7.87e+01 1mroC d.58.31.1 39439 1di0A 158 7.92e+01 1di0A c.16.1.1 30957 1pswA 348 7.96e+01 c.87.1.7 88287 1l3xA 73 7.99e+01 g.20.1.1 91052 1va4A 279 8.02e+01 c.69.1.12 108458 1rw6A 210 8.14e+01 a.47.4.1 105113 1i51B 105 8.16e+01 1m7kA 99 8.22e+01 a.7.7.1 74573 1qpaA 345 8.23e+01 1arv a.93.1.1 18585 1tx4A 198 8.34e+01 1tx4A a.116.1.1 19098 1am4A 199 8.36e+01 1tx4A a.116.1.1 19100 1z2kA 109 8.43e+01 1grnB 203 8.46e+01 1tx4A a.116.1.1 19106 1su8A 636 8.48e+01 e.26.1.2 98999 1w1wA 430 8.75e+01 1qc7A 101 9.00e+01 1qc7A a.118.14.1 18456