# TARGET T0283 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0283.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.00874 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.005 0.001 0.003 0.165 0.048 0.778 2 S 0.013 0.004 0.006 0.558 0.048 0.371 3 F 0.002 0.001 0.008 0.967 0.009 0.014 4 I 0.002 0.001 0.007 0.976 0.008 0.007 5 E 0.002 0.001 0.013 0.973 0.007 0.004 6 K 0.004 0.001 0.014 0.962 0.012 0.007 7 M 0.003 0.001 0.008 0.969 0.010 0.009 8 I 0.003 0.001 0.008 0.960 0.016 0.012 9 G 0.004 0.001 0.014 0.891 0.039 0.051 10 S 0.008 0.003 0.015 0.765 0.077 0.133 11 L 0.005 0.002 0.017 0.808 0.079 0.089 12 N 0.004 0.002 0.015 0.768 0.105 0.106 13 D 0.005 0.001 0.009 0.821 0.074 0.090 14 K 0.003 0.001 0.004 0.931 0.024 0.037 15 R 0.006 0.001 0.005 0.941 0.025 0.023 16 E 0.008 0.001 0.005 0.939 0.020 0.027 17 W 0.002 0.001 0.003 0.974 0.009 0.011 18 K 0.002 0.001 0.005 0.980 0.007 0.006 19 A 0.001 0.001 0.004 0.982 0.007 0.006 20 M 0.001 0.001 0.003 0.989 0.003 0.004 21 E 0.001 0.001 0.003 0.991 0.003 0.003 22 A 0.001 0.001 0.003 0.990 0.004 0.002 23 R 0.001 0.001 0.006 0.985 0.005 0.004 24 A 0.001 0.001 0.018 0.960 0.016 0.005 25 K 0.001 0.001 0.016 0.950 0.024 0.009 26 A 0.001 0.001 0.021 0.813 0.058 0.107 27 L 0.001 0.002 0.013 0.244 0.173 0.567 28 P 0.001 0.001 0.055 0.365 0.240 0.338 29 K 0.001 0.001 0.141 0.777 0.063 0.019 30 E 0.001 0.001 0.126 0.813 0.049 0.011 31 Y 0.001 0.001 0.023 0.955 0.015 0.006 32 H 0.001 0.001 0.005 0.978 0.009 0.007 33 H 0.001 0.001 0.004 0.983 0.007 0.005 34 A 0.001 0.001 0.003 0.984 0.008 0.004 35 Y 0.001 0.001 0.002 0.991 0.004 0.002 36 K 0.001 0.001 0.002 0.992 0.005 0.001 37 A 0.001 0.001 0.002 0.990 0.005 0.002 38 I 0.001 0.001 0.006 0.978 0.008 0.007 39 Q 0.001 0.001 0.027 0.954 0.012 0.005 40 K 0.002 0.001 0.027 0.938 0.025 0.008 41 Y 0.006 0.001 0.024 0.910 0.034 0.024 42 M 0.026 0.006 0.023 0.765 0.090 0.090 43 W 0.067 0.009 0.055 0.564 0.211 0.095 44 T 0.086 0.008 0.050 0.489 0.272 0.094 45 S 0.083 0.017 0.027 0.351 0.289 0.233 46 G 0.028 0.017 0.016 0.122 0.316 0.501 47 G 0.035 0.022 0.014 0.030 0.356 0.543 48 P 0.040 0.022 0.038 0.085 0.460 0.355 49 T 0.036 0.026 0.060 0.152 0.443 0.283 50 D 0.029 0.020 0.076 0.269 0.377 0.228 51 W 0.012 0.005 0.193 0.559 0.164 0.067 52 Q 0.007 0.002 0.148 0.663 0.138 0.043 53 D 0.014 0.006 0.143 0.607 0.169 0.061 54 T 0.008 0.002 0.063 0.800 0.085 0.041 55 K 0.006 0.001 0.044 0.895 0.036 0.017 56 R 0.003 0.002 0.044 0.907 0.030 0.012 57 I 0.002 0.001 0.031 0.934 0.019 0.012 58 F 0.002 0.001 0.008 0.959 0.018 0.012 59 G 0.001 0.001 0.010 0.957 0.023 0.009 60 G 0.001 0.001 0.010 0.956 0.020 0.012 61 I 0.001 0.001 0.009 0.978 0.008 0.004 62 L 0.002 0.001 0.013 0.974 0.008 0.002 63 D 0.001 0.001 0.008 0.984 0.006 0.001 64 L 0.001 0.001 0.007 0.988 0.003 0.001 65 F 0.001 0.001 0.004 0.988 0.004 0.003 66 E 0.002 0.001 0.007 0.982 0.008 0.002 67 E 0.003 0.001 0.007 0.969 0.015 0.006 68 G 0.008 0.001 0.026 0.887 0.045 0.033 69 A 0.007 0.007 0.050 0.839 0.061 0.037 70 A 0.005 0.005 0.071 0.568 0.347 0.004 71 E 0.003 0.001 0.032 0.336 0.608 0.021 72 G 0.001 0.001 0.005 0.019 0.698 0.276 73 K 0.087 0.177 0.005 0.011 0.454 0.264 74 K 0.268 0.090 0.003 0.012 0.063 0.564 75 V 0.242 0.020 0.244 0.177 0.156 0.161 76 T 0.192 0.003 0.308 0.176 0.182 0.139 77 D 0.141 0.007 0.336 0.262 0.170 0.083 78 L 0.120 0.014 0.095 0.251 0.271 0.249 79 T 0.067 0.019 0.042 0.318 0.221 0.332 80 G 0.029 0.008 0.021 0.241 0.222 0.480 81 E 0.012 0.004 0.063 0.510 0.155 0.256 82 D 0.011 0.012 0.095 0.607 0.142 0.134 83 V 0.001 0.001 0.078 0.891 0.020 0.010 84 A 0.001 0.001 0.038 0.941 0.014 0.006 85 A 0.001 0.001 0.024 0.960 0.011 0.004 86 F 0.001 0.001 0.013 0.977 0.007 0.003 87 C 0.001 0.001 0.006 0.986 0.005 0.002 88 D 0.001 0.001 0.012 0.981 0.006 0.001 89 E 0.001 0.001 0.011 0.975 0.009 0.004 90 L 0.001 0.001 0.017 0.953 0.020 0.009 91 M 0.001 0.002 0.031 0.856 0.082 0.027 92 K 0.002 0.001 0.042 0.738 0.140 0.077 93 D 0.004 0.004 0.047 0.256 0.377 0.312 94 T 0.003 0.003 0.054 0.208 0.368 0.364 95 K 0.004 0.003 0.040 0.288 0.343 0.321 96 T 0.008 0.004 0.020 0.510 0.185 0.273 97 W 0.002 0.001 0.006 0.950 0.021 0.020 98 M 0.003 0.001 0.002 0.968 0.011 0.016 99 D 0.001 0.001 0.002 0.987 0.005 0.005 100 K 0.001 0.001 0.002 0.991 0.004 0.002 101 Y 0.001 0.001 0.002 0.992 0.003 0.002 102 R 0.001 0.001 0.001 0.992 0.003 0.002 103 T 0.001 0.001 0.002 0.989 0.004 0.004 104 K 0.001 0.001 0.002 0.981 0.007 0.007 105 L 0.001 0.001 0.004 0.971 0.012 0.012 106 N 0.001 0.001 0.008 0.955 0.022 0.013 107 D 0.001 0.001 0.012 0.946 0.025 0.017 108 S 0.001 0.001 0.020 0.823 0.059 0.096 109 I 0.003 0.004 0.027 0.603 0.083 0.279 110 G 0.009 0.005 0.017 0.135 0.137 0.696 111 R 0.003 0.003 0.003 0.035 0.061 0.894 112 D 0.001 0.001 0.001 0.001 0.012 0.986