# TARGET T0283 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0283.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.00874 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.393 0.160 0.190 0.071 0.074 0.016 0.033 0.030 0.009 0.022 0.001 2 S 0.560 0.081 0.185 0.048 0.041 0.031 0.026 0.009 0.009 0.009 0.001 3 F 0.910 0.016 0.019 0.032 0.004 0.010 0.002 0.002 0.004 0.001 0.001 4 I 0.984 0.003 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 K 0.980 0.002 0.002 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 M 0.916 0.008 0.010 0.060 0.001 0.002 0.001 0.001 0.002 0.001 0.001 8 I 0.818 0.036 0.054 0.068 0.005 0.004 0.007 0.001 0.006 0.002 0.001 9 G 0.680 0.006 0.020 0.042 0.024 0.003 0.040 0.139 0.001 0.043 0.001 10 S 0.661 0.032 0.066 0.197 0.010 0.019 0.002 0.001 0.009 0.003 0.001 11 L 0.716 0.029 0.043 0.171 0.003 0.014 0.008 0.002 0.012 0.001 0.001 12 N 0.737 0.008 0.043 0.107 0.005 0.008 0.071 0.006 0.003 0.010 0.001 13 D 0.551 0.018 0.041 0.245 0.017 0.031 0.060 0.020 0.015 0.002 0.001 14 K 0.782 0.034 0.062 0.100 0.004 0.009 0.003 0.001 0.004 0.001 0.001 15 R 0.816 0.042 0.063 0.033 0.011 0.010 0.011 0.005 0.006 0.002 0.001 16 E 0.911 0.015 0.036 0.021 0.003 0.006 0.002 0.001 0.002 0.002 0.001 17 W 0.978 0.003 0.005 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 18 K 0.983 0.003 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 A 0.983 0.001 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 M 0.984 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 E 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 A 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 R 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 A 0.981 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 K 0.982 0.001 0.003 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 A 0.512 0.003 0.010 0.468 0.001 0.002 0.001 0.001 0.002 0.001 0.001 27 L 0.055 0.044 0.789 0.009 0.006 0.014 0.008 0.001 0.071 0.002 0.001 28 P 0.104 0.002 0.863 0.003 0.001 0.022 0.001 0.001 0.001 0.001 0.002 29 K 0.986 0.001 0.003 0.006 0.001 0.001 0.001 0.003 0.001 0.001 0.001 30 E 0.976 0.001 0.002 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 Y 0.956 0.001 0.003 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 H 0.990 0.001 0.002 0.004 0.001 0.001 0.002 0.001 0.001 0.001 0.001 33 H 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 A 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 K 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.986 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 Q 0.990 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.968 0.003 0.002 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 Y 0.808 0.007 0.007 0.170 0.001 0.003 0.002 0.001 0.002 0.001 0.001 42 M 0.789 0.033 0.028 0.124 0.002 0.010 0.004 0.001 0.008 0.001 0.001 43 W 0.584 0.095 0.137 0.084 0.024 0.034 0.018 0.005 0.012 0.007 0.001 44 T 0.540 0.073 0.140 0.168 0.014 0.036 0.006 0.003 0.015 0.003 0.001 45 S 0.330 0.095 0.139 0.290 0.048 0.024 0.037 0.010 0.020 0.006 0.001 46 G 0.202 0.041 0.174 0.136 0.124 0.013 0.043 0.156 0.009 0.101 0.001 47 G 0.068 0.034 0.263 0.008 0.169 0.007 0.015 0.024 0.013 0.397 0.001 48 P 0.482 0.013 0.233 0.156 0.004 0.038 0.004 0.003 0.003 0.002 0.061 49 T 0.263 0.163 0.123 0.315 0.080 0.019 0.011 0.008 0.011 0.005 0.001 50 D 0.203 0.118 0.200 0.167 0.060 0.080 0.100 0.015 0.048 0.008 0.001 51 W 0.659 0.032 0.059 0.170 0.010 0.025 0.018 0.012 0.012 0.004 0.001 52 Q 0.844 0.029 0.038 0.066 0.006 0.005 0.004 0.001 0.004 0.002 0.001 53 D 0.555 0.006 0.026 0.257 0.006 0.035 0.084 0.014 0.015 0.002 0.001 54 T 0.781 0.013 0.032 0.136 0.002 0.016 0.010 0.003 0.007 0.001 0.001 55 K 0.907 0.018 0.030 0.032 0.003 0.003 0.003 0.001 0.002 0.001 0.001 56 R 0.912 0.007 0.017 0.024 0.003 0.012 0.016 0.003 0.004 0.001 0.001 57 I 0.887 0.011 0.012 0.081 0.001 0.004 0.001 0.001 0.002 0.001 0.001 58 F 0.883 0.012 0.016 0.074 0.002 0.005 0.002 0.001 0.004 0.001 0.001 59 G 0.890 0.004 0.026 0.021 0.005 0.001 0.015 0.010 0.001 0.027 0.001 60 G 0.858 0.002 0.003 0.047 0.003 0.004 0.039 0.043 0.001 0.002 0.001 61 I 0.952 0.005 0.003 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.966 0.012 0.010 0.005 0.001 0.003 0.001 0.001 0.002 0.001 0.001 63 D 0.987 0.002 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 L 0.964 0.003 0.003 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 F 0.958 0.007 0.007 0.022 0.001 0.002 0.001 0.001 0.001 0.001 0.001 66 E 0.966 0.008 0.012 0.007 0.002 0.003 0.001 0.001 0.001 0.001 0.001 67 E 0.909 0.008 0.009 0.070 0.001 0.002 0.001 0.001 0.001 0.001 0.001 68 G 0.905 0.010 0.026 0.033 0.004 0.004 0.006 0.005 0.003 0.004 0.001 69 A 0.937 0.010 0.012 0.030 0.003 0.005 0.001 0.001 0.001 0.001 0.001 70 A 0.829 0.027 0.023 0.108 0.005 0.003 0.002 0.001 0.002 0.001 0.001 71 E 0.263 0.015 0.171 0.523 0.003 0.004 0.014 0.001 0.005 0.002 0.001 72 G 0.004 0.001 0.001 0.014 0.001 0.001 0.226 0.745 0.001 0.006 0.001 73 K 0.003 0.240 0.711 0.002 0.009 0.019 0.004 0.001 0.011 0.001 0.001 74 K 0.004 0.153 0.741 0.002 0.007 0.079 0.003 0.001 0.009 0.001 0.001 75 V 0.141 0.392 0.359 0.007 0.017 0.064 0.001 0.001 0.016 0.001 0.001 76 T 0.915 0.014 0.004 0.063 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 D 0.269 0.252 0.109 0.096 0.180 0.043 0.025 0.002 0.023 0.001 0.001 78 L 0.301 0.279 0.202 0.106 0.023 0.041 0.004 0.001 0.042 0.001 0.001 79 T 0.124 0.257 0.224 0.314 0.034 0.023 0.004 0.001 0.019 0.001 0.001 80 G 0.061 0.028 0.214 0.013 0.176 0.006 0.017 0.077 0.007 0.402 0.001 81 E 0.886 0.010 0.052 0.027 0.005 0.007 0.002 0.004 0.001 0.005 0.001 82 D 0.636 0.013 0.094 0.082 0.005 0.131 0.007 0.002 0.025 0.002 0.003 83 V 0.962 0.001 0.001 0.033 0.001 0.002 0.001 0.001 0.001 0.001 0.001 84 A 0.987 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 A 0.965 0.001 0.002 0.028 0.001 0.001 0.002 0.001 0.001 0.001 0.001 86 F 0.937 0.001 0.004 0.049 0.001 0.002 0.002 0.002 0.001 0.001 0.001 87 C 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 D 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 E 0.988 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 L 0.962 0.001 0.001 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 M 0.841 0.009 0.026 0.106 0.001 0.008 0.002 0.001 0.005 0.001 0.001 92 K 0.648 0.012 0.052 0.243 0.005 0.009 0.018 0.007 0.003 0.004 0.001 93 D 0.365 0.054 0.147 0.228 0.020 0.049 0.095 0.012 0.025 0.004 0.001 94 T 0.362 0.063 0.101 0.345 0.023 0.031 0.037 0.012 0.021 0.005 0.001 95 K 0.500 0.062 0.130 0.108 0.032 0.040 0.086 0.020 0.013 0.010 0.001 96 T 0.593 0.108 0.133 0.091 0.032 0.021 0.006 0.003 0.009 0.002 0.001 97 W 0.867 0.011 0.020 0.072 0.003 0.011 0.005 0.004 0.006 0.002 0.001 98 M 0.949 0.011 0.018 0.014 0.001 0.003 0.001 0.001 0.002 0.001 0.001 99 D 0.985 0.001 0.003 0.007 0.001 0.001 0.002 0.001 0.001 0.001 0.001 100 K 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 Y 0.975 0.002 0.002 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 R 0.991 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 T 0.990 0.003 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 K 0.965 0.002 0.002 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 L 0.866 0.006 0.011 0.107 0.001 0.002 0.001 0.001 0.003 0.001 0.001 106 N 0.785 0.007 0.024 0.063 0.003 0.020 0.077 0.008 0.008 0.003 0.001 107 D 0.858 0.017 0.029 0.069 0.005 0.008 0.007 0.002 0.002 0.001 0.001 108 S 0.767 0.019 0.040 0.153 0.004 0.009 0.004 0.001 0.004 0.001 0.001 109 I 0.520 0.070 0.084 0.293 0.008 0.009 0.004 0.001 0.010 0.001 0.001 110 G 0.282 0.053 0.126 0.106 0.056 0.022 0.146 0.124 0.016 0.070 0.001 111 R 0.280 0.201 0.298 0.108 0.032 0.029 0.013 0.003 0.029 0.007 0.001 112 D 0.242 0.086 0.295 0.123 0.031 0.073 0.090 0.016 0.030 0.012 0.002