# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nox 205 6.93e-01 1nox d.90.1.1 40242 1tn6A 382 1.01e+00 1r45A 204 1.59e+00 1hbnB 442 1.77e+00 1mroB a.89.1.1,d.58.31.2 60900,60901 1nogA 177 2.50e+00 a.25.2.2 85923 1bg6 359 2.70e+00 1bg6 a.100.1.5,c.2.1.6 18810,30214 1a0p 290 2.76e+00 1a0p a.60.9.1,d.163.1.1 18105,42165 1j77A 209 2.97e+00 1j77A a.132.1.2 62674 1kw4A 89 3.82e+00 a.60.1.2 73077 1cy5A 97 4.02e+00 1cy5A a.77.1.3 18430 1g5aA 628 4.12e+00 b.71.1.1,c.1.8.1 65152,65153 1aj8A 371 4.72e+00 1aj8A a.103.1.1 18900 1a5t 334 4.75e+00 1a5t a.80.1.1,c.37.1.20 18450,32423 1f1eA 154 5.10e+00 a.22.1.2 64927 1dd9A 338 5.40e+00 1dd9A e.13.1.1 43254 1eyhA 144 5.46e+00 1eduA a.118.9.1 19214 1d4oA 184 5.68e+00 1d4oA c.31.1.4 31748 1mla 309 5.82e+00 1mla c.19.1.1,d.58.23.1 31031,39383 1iuqA 367 5.87e+00 c.112.1.1 90703 1m33A 258 6.11e+00 c.69.1.26 78514 1fj2A 232 6.23e+00 1auoA c.69.1.14 34720 1jtvA 327 6.41e+00 c.2.1.2 84230 1d2nA 272 6.50e+00 1d2nA c.37.1.20 32428 1ey4A 149 6.57e+00 1snc b.40.1.1 24815 1jr8A 117 6.65e+00 a.24.15.1 67115 1ay7B 89 6.66e+00 1ay7B c.9.1.1 30836 1a6m 151 6.87e+00 1a6m a.1.1.2 15018 1gvjA 146 7.23e+00 a.4.5.21 90525 1ash 150 7.38e+00 1ash a.1.1.2 15622 1rfyA 102 7.41e+00 1m45A 148 7.63e+00 a.39.1.5 78598 1e6uA 321 8.16e+00 1bsvA c.2.1.2 29805 1nofA 383 8.51e+00 b.71.1.2,c.1.8.3 92020,92021 1hqkA 154 8.70e+00 c.16.1.1 65902 1dc1A 323 9.25e+00 1dc1A c.52.1.11 33321 1gs9A 165 9.74e+00 a.24.1.1 83313 1hz4A 373 9.77e+00 a.118.8.2 65960 1go3F 107 1.00e+01 a.60.8.2 65407 1aba 87 1.04e+01 1aba c.47.1.1 32760 1mixA 206 1.05e+01 a.11.2.1,b.55.1.5 79166,79167 1tn6B 437 1.05e+01 1dozA 309 1.07e+01 1ak1 c.92.1.1 35592 1gxyA 226 1.10e+01 d.166.1.3 76380 1fpoA 171 1.14e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1kr7A 110 1.18e+01 a.1.1.4 72890 1cqxA 403 1.18e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1ix9A 205 1.26e+01 a.2.11.1,d.44.1.1 76899,76900 1eexG 173 1.28e+01 1dioG a.23.2.1 16490 1ispA 181 1.31e+01 c.69.1.18 76778 1ek6A 348 1.39e+01 1xel c.2.1.2 29800 1ikpA 613 1.46e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1lucA 355 1.49e+01 1lucA c.1.16.1 29547 1k6iA 352 1.55e+01 c.2.1.2 68223 1j6oA 268 1.58e+01 c.1.9.12 77088 1fm0D 81 1.65e+01 1fmaD d.15.3.1 37642 1fxoA 293 1.69e+01 1g0rA c.68.1.6 34524 12asA 330 1.82e+01 12asA d.104.1.1 40783 1mgtA 174 1.89e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1eexA 554 1.89e+01 1dioA c.1.19.3 29650 1akhA 61 1.94e+01 1akhA a.4.1.1 15980 1g2nA 264 1.94e+01 1lbd a.123.1.1 60227 1k07A 263 1.99e+01 d.157.1.1 77218 1a62 130 1.99e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1s1fA 406 2.02e+01 1kjwA 295 2.03e+01 b.34.2.1,c.37.1.1 68643,68644 1mtzA 293 2.10e+01 c.69.1.7 79467 1fk5A 93 2.12e+01 1rzl a.52.1.1 59866 1ds1A 324 2.17e+01 1drtA b.82.2.2 28127 1eluA 390 2.21e+01 1elqA c.67.1.3 34434 1iqcA 308 2.30e+01 a.3.1.5,a.3.1.5 66266,66267 1ak0 270 2.30e+01 1ak0 a.124.1.2 19345 1a76 326 2.31e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1eca 136 2.34e+01 1flp a.1.1.2 15209 1lbu 213 2.39e+01 1lbu a.20.1.1,d.65.1.1 16416,39549 1m70A 190 2.41e+01 a.3.1.4,a.3.1.4 91200,91201 1iq4A 179 2.42e+01 1iq4A d.77.1.1 62641 1dlwA 116 2.44e+01 1dlyA a.1.1.1 14982 1g5tA 196 2.44e+01 1g5rA c.37.1.11 32366 1mxrA 375 2.45e+01 a.25.1.2 85197 1el5A 389 2.58e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1n3lA 372 2.58e+01 c.26.1.1 79966 1h2eA 207 2.65e+01 c.60.1.1 70857 1bs0A 384 2.66e+01 1bs0A c.67.1.4 34490 2cfuA 658 2.66e+01 1e19A 314 2.71e+01 1b7bA c.73.1.1 34967 1jlvA 209 2.74e+01 a.45.1.1,c.47.1.5 71729,71730 1ah7 245 2.77e+01 1ah7 a.124.1.1 19339 1d8wA 426 2.78e+01 1de5A c.1.15.2 29394 1j79A 347 2.97e+01 1j79A c.1.9.4 62675 1a41 234 3.02e+01 1a41 d.163.1.2 42174 1ls1A 295 3.04e+01 a.24.13.1,c.37.1.10 78170,78171 1m2dA 110 3.16e+01 c.47.1.11 78476 1aep 161 3.28e+01 1aep a.63.1.1 18139 1hh8A 213 3.28e+01 1e96B a.118.8.1 61042 1dcs 311 3.29e+01 1dcs b.82.2.1 28124 1j98A 157 3.35e+01 1j98A d.185.1.2 62755 1k3xA 262 3.36e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1jkxA 212 3.38e+01 c.65.1.1 66813 1iv3A 152 3.42e+01 d.79.5.1 76828 1brt 277 3.43e+01 1brt c.69.1.12 34699 1a6q 382 3.43e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1l9xA 315 3.53e+01 c.23.16.1 73762 1jyeA 349 3.58e+01 c.93.1.1 67455 1l6rA 227 3.60e+01 c.108.1.10 77768 1m4lA 307 3.63e+01 c.56.5.1 78604 1i1wA 303 3.87e+01 c.1.8.3 76732 1jboA 162 3.90e+01 a.1.1.3 84150 1ne2A 200 3.93e+01 c.66.1.32 85586 1af7 274 3.94e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1mh1 186 3.97e+01 1eesA c.37.1.8 32002 1j3aA 142 4.11e+01 c.21.1.1 77070 1ijbA 202 4.17e+01 c.62.1.1 71229 1gtkA 313 4.18e+01 c.94.1.1,d.50.2.1 76346,76347 1gudA 288 4.20e+01 c.93.1.1 83326 1lb3A 182 4.20e+01 a.25.1.1 77873 1dowA 205 4.24e+01 1dovA a.24.9.1 16626 1gbs 185 4.25e+01 153l d.2.1.5 36986 1hqsA 423 4.34e+01 1iso c.77.1.1 61154 1lqtA 456 4.34e+01 c.3.1.1,c.4.1.1 74198,74199 1it2A 146 4.50e+01 a.1.1.2 66365 1lniA 96 4.53e+01 d.1.1.2 74046 1jx4A 352 4.60e+01 d.240.1.1,e.8.1.7 90378,90379 1mk4A 157 4.63e+01 d.108.1.1 84979 1gheA 177 4.66e+01 d.108.1.1 76222 1eyeA 280 4.71e+01 1aj2 c.1.21.1 29672 1duvG 333 4.82e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1a8q 274 4.86e+01 1brt c.69.1.12 34702 1evyA 366 4.97e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1ks8A 433 5.39e+01 a.102.1.2 77519 1gp6A 356 5.39e+01 b.82.2.1 65441 1gmxA 108 5.43e+01 c.46.1.3 65355 1hm9A 468 5.57e+01 b.81.1.4,c.68.1.5 65866,65867 1fcqA 350 5.64e+01 c.1.8.9 65006 1n2eA 300 5.77e+01 c.26.1.4 85268 1l9lA 74 5.77e+01 a.64.1.1 77827 1fp2A 352 5.81e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1cv8 174 5.82e+01 1cv8 d.3.1.1 37089 1nc5A 373 5.97e+01 a.102.1.6 85548 1jidA 128 6.01e+01 d.201.1.1 66735 1g8qA 90 6.01e+01 1g8qA a.135.1.1 19621 1hfuA 503 6.07e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1augA 215 6.11e+01 1a2zA c.56.4.1 33798 1gkmA 509 6.21e+01 a.127.1.2 70228 1c3cA 429 6.21e+01 1c3cA a.127.1.1 19425 1byi 224 6.33e+01 1byi c.37.1.10 32199 1jyhA 157 6.36e+01 d.60.1.3 71956 1mtyD 512 6.37e+01 1mhyD a.25.1.2 16742 1g8mA 593 6.54e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1f60A 458 6.55e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1lj8A 493 6.58e+01 a.100.1.9,c.2.1.6 90392,90393 1j7xA 302 6.61e+01 c.14.1.2 66425 1ks9A 291 6.65e+01 a.100.1.7,c.2.1.6 68857,68858 1q6zA 528 6.66e+01 1jhgA 101 6.68e+01 1jhgA a.4.12.1 19009 1kolA 398 6.68e+01 b.35.1.2,c.2.1.1 77474,77475 1dfmA 223 6.85e+01 1d2iA c.52.1.5 33295 1t92A 116 6.92e+01 1lo7A 141 6.94e+01 d.38.1.1 74144 1jakA 512 7.07e+01 c.1.8.6,d.92.2.1 66472,66473 1dszA 86 7.09e+01 2nllB g.39.1.2 45129 1adt 356 7.23e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1czpA 98 7.23e+01 1awd d.15.4.1 37645 1mqoA 227 7.26e+01 d.157.1.1 103846 1n62A 166 7.30e+01 a.56.1.1,d.15.4.2 80090,80091 1i2tA 61 7.40e+01 1i2tA a.144.1.1 61582 1gweA 503 7.41e+01 e.5.1.1 70667 1914 232 7.41e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1twyA 290 7.42e+01 1i40A 175 7.49e+01 b.40.5.1 66024 1jetA 517 7.53e+01 1jevA c.94.1.1 35718 1ii5A 233 7.55e+01 c.94.1.1 62412 1evlA 401 7.57e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1gk9A 260 7.57e+01 d.153.1.2 65246 1kptA 105 7.60e+01 1kptA d.70.1.1 39588 1ew6A 137 7.69e+01 1ewaA a.1.1.2 15637 1a7s 221 7.73e+01 1a7s b.47.1.2 26284 1tmxA 293 7.92e+01 1njhA 119 7.93e+01 b.128.1.1 85787 1epxA 370 7.96e+01 1fbaA c.1.10.1 29150 1h97A 147 7.97e+01 1h97A a.1.1.2 60812 1km4A 247 8.01e+01 c.1.2.3 72740 1kqpA 271 8.15e+01 c.26.2.1 72883 1jo0A 98 8.15e+01 d.68.4.1 77140 1gxuA 91 8.18e+01 d.58.10.1 76378 1b8zA 90 8.18e+01 1huuA a.55.1.1 17902 1b6a 478 8.21e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1bgc 174 8.21e+01 1bgc a.26.1.1 16822 1b3aA 67 8.30e+01 1b3aA d.9.1.1 37410 1iu8A 206 8.33e+01 c.56.4.1 71436 2evaA 307 8.37e+01 1lqvA 193 8.41e+01 d.19.1.1 74206 1gx3A 284 8.41e+01 d.3.1.5 70678 1a93B 34 8.49e+01 1a93B h.1.3.1 45545 1ja9A 274 8.51e+01 c.2.1.2 62817 1a8s 273 8.56e+01 1brt c.69.1.12 34710 1txgA 335 8.57e+01 1gpiA 431 8.60e+01 b.29.1.10 65450 1n6aA 259 8.65e+01 b.76.2.1,b.85.7.1 80121,80122 1ts9A 102 8.69e+01 1j8bA 112 8.73e+01 d.222.1.1 77101 1ctf 74 8.75e+01 1ctf d.45.1.1 38759 1h05A 146 8.81e+01 c.23.13.1 76433 1cb0A 283 8.87e+01 1cb0A c.56.2.1 33790 1s3cA 141 8.88e+01 1aisB 200 8.96e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1mtyG 162 8.96e+01 1mtyG a.23.3.1 16498