# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b8zA 90 1.48e-01 1huuA a.55.1.1 17902 1gk9A 260 3.99e-01 d.153.1.2 65246 1kid 203 1.01e+00 1derA c.8.5.1 30771 1tn6A 382 1.33e+00 1nox 205 2.23e+00 1nox d.90.1.1 40242 1io7A 368 3.05e+00 1f4tA a.104.1.1 18971 1a41 234 3.07e+00 1a41 d.163.1.2 42174 1a59 378 3.47e+00 1aj8A a.103.1.1 18902 1dc1A 323 4.06e+00 1dc1A c.52.1.11 33321 1ey4A 149 4.25e+00 1snc b.40.1.1 24815 1a6m 151 4.32e+00 1a6m a.1.1.2 15018 1jigA 146 4.95e+00 a.25.1.1 71685 1hbnB 442 5.14e+00 1mroB a.89.1.1,d.58.31.2 60900,60901 1ay7B 89 5.16e+00 1ay7B c.9.1.1 30836 1ne2A 200 5.55e+00 c.66.1.32 85586 1fiuA 286 7.28e+00 1fiuA c.52.1.10 33317 1akhA 61 7.29e+00 1akhA a.4.1.1 15980 1nbuA 119 8.08e+00 d.96.1.3 91767 1mtzA 293 8.24e+00 c.69.1.7 79467 1mla 309 8.46e+00 1mla c.19.1.1,d.58.23.1 31031,39383 1q6zA 528 9.39e+00 1mgtA 174 1.00e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1g5aA 628 1.02e+01 b.71.1.1,c.1.8.1 65152,65153 1af7 274 1.07e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1txgA 335 1.18e+01 1l9xA 315 1.27e+01 c.23.16.1 73762 1fp2A 352 1.28e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1na3A 91 1.29e+01 k.38.1.1 85481 1jr8A 117 1.33e+01 a.24.15.1 67115 1u0fA 564 1.50e+01 1rfyA 102 1.55e+01 1iab 200 1.55e+01 1iae d.92.1.8 40312 1ars 396 1.58e+01 1ajsA c.67.1.1 34287 1a5t 334 1.59e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1dmgA 225 1.73e+01 1dmgA c.22.1.1 31036 1kw4A 89 1.87e+01 a.60.1.2 73077 1muwA 386 1.89e+01 c.1.15.3 79495 1lo7A 141 1.97e+01 d.38.1.1 74144 1m1nB 522 2.05e+01 c.92.2.3 78418 1evyA 366 2.11e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1ds1A 324 2.11e+01 1drtA b.82.2.2 28127 1e6cA 173 2.11e+01 1shkA c.37.1.2 59296 1d8wA 426 2.14e+01 1de5A c.1.15.2 29394 1elwA 118 2.17e+01 1a17 a.118.8.1 19207 1dytA 133 2.30e+01 7rsa d.5.1.1 37288 1e19A 314 2.34e+01 1b7bA c.73.1.1 34967 1gx3A 284 2.39e+01 d.3.1.5 70678 1ah7 245 2.46e+01 1ah7 a.124.1.1 19339 1g2nA 264 2.49e+01 1lbd a.123.1.1 60227 1go3F 107 2.58e+01 a.60.8.2 65407 1a0p 290 2.64e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1e7lA 157 2.73e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1l1lA 739 2.78e+01 c.7.1.4 73470 1ash 150 2.81e+01 1ash a.1.1.2 15622 1iuqA 367 2.83e+01 c.112.1.1 90703 1m1nA 491 2.83e+01 c.92.2.3 78417 1k07A 263 2.94e+01 d.157.1.1 77218 1bgc 174 3.04e+01 1bgc a.26.1.1 16822 1k2xA 177 3.11e+01 d.153.1.5 90929 1iw0A 215 3.17e+01 a.132.1.1 83720 1ka1A 357 3.31e+01 e.7.1.1 68369 1alu 186 3.34e+01 1alu a.26.1.1 16826 1k6iA 352 3.41e+01 c.2.1.2 68223 1j30A 144 3.41e+01 a.25.1.1 90806 1ek6A 348 3.42e+01 1xel c.2.1.2 29800 1nkd 65 3.61e+01 1nkd a.30.1.1 16974 1m33A 258 3.61e+01 c.69.1.26 78514 1cb0A 283 3.72e+01 1cb0A c.56.2.1 33790 1khcA 147 3.77e+01 b.34.9.2 68608 1jhgA 101 3.87e+01 1jhgA a.4.12.1 19009 1df4A 68 3.91e+01 1aikN h.3.2.1 45719 1ks8A 433 4.01e+01 a.102.1.2 77519 1iqzA 81 4.13e+01 d.58.1.4 66281 1cex 214 4.31e+01 1cex c.69.1.30 31285 1k3xA 262 4.34e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1a8l 226 4.39e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1dcs 311 4.42e+01 1dcs b.82.2.1 28124 1mun 225 4.44e+01 1mun a.96.1.2 18744 1ew6A 137 4.60e+01 1ewaA a.1.1.2 15637 1hz4A 373 4.67e+01 a.118.8.2 65960 1fj2A 232 4.77e+01 1auoA c.69.1.14 34720 1a76 326 4.88e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1j77A 209 5.01e+01 1j77A a.132.1.2 62674 1lfwA 470 5.17e+01 c.56.5.4,d.58.19.1 77942,77943 1lj8A 493 5.33e+01 a.100.1.9,c.2.1.6 90392,90393 1kgsA 225 5.75e+01 a.4.6.1,c.23.1.1 68596,68597 1lqtA 456 5.79e+01 c.3.1.1,c.4.1.1 74198,74199 1gu7A 364 5.79e+01 b.35.1.2,c.2.1.1 83321,83322 1r45A 204 5.89e+01 16vpA 366 6.02e+01 16vpA d.180.1.1 42601 1eyeA 280 6.10e+01 1aj2 c.1.21.1 29672 1s99A 200 6.27e+01 1bx4A 345 6.30e+01 1bx4A c.72.1.1 34935 1cy5A 97 6.35e+01 1cy5A a.77.1.3 18430 1mk4A 157 6.38e+01 d.108.1.1 84979 1duvG 333 6.45e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1eexA 554 6.61e+01 1dioA c.1.19.3 29650 1iq4A 179 6.74e+01 1iq4A d.77.1.1 62641 2d5cA 263 6.74e+01 1e6uA 321 6.75e+01 1bsvA c.2.1.2 29805 1zelA 298 6.75e+01 1ls1A 295 6.75e+01 a.24.13.1,c.37.1.10 78170,78171 1ekqA 272 6.79e+01 1c3qA c.72.1.2 34941 1h2bA 359 6.82e+01 b.35.1.2,c.2.1.1 90543,90544 1evlA 401 6.82e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1fsgA 233 6.90e+01 1qk3A c.61.1.1 34029 1hd2A 161 6.93e+01 c.47.1.10 60962 1a8s 273 6.97e+01 1brt c.69.1.12 34710 1nc5A 373 7.02e+01 a.102.1.6 85548 1gheA 177 7.02e+01 d.108.1.1 76222 1lb3A 182 7.09e+01 a.25.1.1 77873 1bs0A 384 7.13e+01 1bs0A c.67.1.4 34490 1n6aA 259 7.17e+01 b.76.2.1,b.85.7.1 80121,80122 1cqxA 403 7.20e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1mtyB 384 7.27e+01 1mtyB a.25.1.2 16740 1n93X 375 7.28e+01 a.206.1.1 91707 1s1fA 406 7.33e+01 1dosA 358 7.39e+01 1dosA c.1.10.2 29175 1l9lA 74 7.41e+01 a.64.1.1 77827 1a9xB 379 7.48e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1ispA 181 7.52e+01 c.69.1.18 76778 1eca 136 7.54e+01 1flp a.1.1.2 15209 1nkiA 135 7.65e+01 d.32.1.2 91941 1lk9A 448 7.67e+01 c.67.1.1 78057 1h99A 224 7.86e+01 a.142.1.1,a.142.1.1 60814,60815 1ng6A 148 7.94e+01 a.182.1.1 85670 1hz6A 72 7.97e+01 2ptl d.15.7.1 61429 1ed8A 449 8.09e+01 1b8jA c.76.1.1 34988 1ju2A 536 8.10e+01 c.3.1.2,d.16.1.1 77169,77170 1m45A 148 8.28e+01 a.39.1.5 78598 1jyhA 157 8.63e+01 d.60.1.3 71956 1f1mA 164 8.65e+01 1ggqA a.24.12.1 59598 1jakA 512 8.87e+01 c.1.8.6,d.92.2.1 66472,66473 1el5A 389 8.88e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1a7w 69 8.91e+01 1a7w a.22.1.2 16477