# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b8zA 90 4.62e-02 1huuA a.55.1.1 17902 1kid 203 1.57e-01 1derA c.8.5.1 30771 1jigA 146 2.15e-01 a.25.1.1 71685 1gk9A 260 3.64e-01 d.153.1.2 65246 1ay7B 89 5.26e-01 1ay7B c.9.1.1 30836 1tn6A 382 5.57e-01 1evyA 366 9.82e-01 1evyA a.100.1.6,c.2.1.6 18811,30215 1a6m 151 1.37e+00 1a6m a.1.1.2 15018 1mtzA 293 2.00e+00 c.69.1.7 79467 1ne2A 200 2.23e+00 c.66.1.32 85586 1g5aA 628 2.34e+00 b.71.1.1,c.1.8.1 65152,65153 1gx3A 284 2.43e+00 d.3.1.5 70678 1nox 205 2.45e+00 1nox d.90.1.1 40242 1rfyA 102 3.08e+00 1jr8A 117 6.20e+00 a.24.15.1 67115 1m1nA 491 6.35e+00 c.92.2.3 78417 1txgA 335 6.77e+00 1a9xB 379 7.17e+00 1c3oB c.8.3.1,c.23.16.1 30732,31409 1u0fA 564 7.44e+00 1akhA 61 7.96e+00 1akhA a.4.1.1 15980 1dytA 133 7.99e+00 7rsa d.5.1.1 37288 1gheA 177 8.12e+00 d.108.1.1 76222 1ey4A 149 9.12e+00 1snc b.40.1.1 24815 1bx4A 345 9.21e+00 1bx4A c.72.1.1 34935 1a8l 226 9.39e+00 1a8l c.47.1.2,c.47.1.2 32777,32778 1h99A 224 9.43e+00 a.142.1.1,a.142.1.1 60814,60815 1na3A 91 9.96e+00 k.38.1.1 85481 1mgtA 174 9.99e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1nofA 383 1.02e+01 b.71.1.2,c.1.8.3 92020,92021 1jyhA 157 1.07e+01 d.60.1.3 71956 1bupA 386 1.07e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1k2xA 177 1.14e+01 d.153.1.5 90929 1ars 396 1.17e+01 1ajsA c.67.1.1 34287 1k07A 263 1.29e+01 d.157.1.1 77218 1tn6B 437 1.39e+01 1iq4A 179 1.42e+01 1iq4A d.77.1.1 62641 1k3xA 262 1.47e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1hz6A 72 1.61e+01 2ptl d.15.7.1 61429 1hz4A 373 1.64e+01 a.118.8.2 65960 1apyA 162 1.65e+01 1apyA d.153.1.5 42004 1eyeA 280 1.65e+01 1aj2 c.1.21.1 29672 1nkd 65 1.66e+01 1nkd a.30.1.1 16974 1el5A 389 1.69e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1aisB 200 1.71e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1a5t 334 1.74e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1kw4A 89 1.78e+01 a.60.1.2 73077 1fj2A 232 1.81e+01 1auoA c.69.1.14 34720 1ek6A 348 1.82e+01 1xel c.2.1.2 29800 1a0p 290 1.84e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1e19A 314 1.91e+01 1b7bA c.73.1.1 34967 1n97A 389 2.00e+01 a.104.1.1 80335 1c3cA 429 2.04e+01 1c3cA a.127.1.1 19425 1d4oA 184 2.09e+01 1d4oA c.31.1.4 31748 1hh8A 213 2.12e+01 1e96B a.118.8.1 61042 1r45A 204 2.19e+01 1dmgA 225 2.24e+01 1dmgA c.22.1.1 31036 1n93X 375 2.26e+01 a.206.1.1 91707 1m2dA 110 2.30e+01 c.47.1.11 78476 1kyhA 276 2.30e+01 c.72.1.4 73222 1s1fA 406 2.35e+01 2d5cA 263 2.38e+01 1ash 150 2.39e+01 1ash a.1.1.2 15622 1ekqA 272 2.48e+01 1c3qA c.72.1.2 34941 1dosA 358 2.68e+01 1dosA c.1.10.2 29175 1m1nB 522 2.88e+01 c.92.2.3 78418 1nogA 177 3.04e+01 a.25.2.2 85923 1k6iA 352 3.04e+01 c.2.1.2 68223 1iab 200 3.08e+01 1iae d.92.1.8 40312 1lc0A 294 3.14e+01 c.2.1.3,d.81.1.4 73823,73824 1eca 136 3.17e+01 1flp a.1.1.2 15209 1duvG 333 3.18e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1n6aA 259 3.33e+01 b.76.2.1,b.85.7.1 80121,80122 1lb3A 182 3.38e+01 a.25.1.1 77873 1kr7A 110 3.50e+01 a.1.1.4 72890 1df4A 68 3.53e+01 1aikN h.3.2.1 45719 1j6oA 268 3.62e+01 c.1.9.12 77088 1c1dA 355 3.63e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1mla 309 3.92e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1l9xA 315 4.02e+01 c.23.16.1 73762 1e6uA 321 4.16e+01 1bsvA c.2.1.2 29805 1k3yA 221 4.18e+01 a.45.1.1,c.47.1.5 77245,77246 1q6zA 528 4.21e+01 1c4qA 69 4.25e+01 2bosA b.40.2.1 25010 16vpA 366 4.30e+01 16vpA d.180.1.1 42601 1s99A 200 4.37e+01 1ae9A 179 4.41e+01 1ae9A d.163.1.1 42153 1ds1A 324 4.44e+01 1drtA b.82.2.2 28127 1ail 73 4.49e+01 1ail a.16.1.1 16381 1bg6 359 4.51e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1koe 172 4.53e+01 1koe d.169.1.5 42448 1a62 130 4.83e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1l1lA 739 4.86e+01 c.7.1.4 73470 1fpoA 171 4.92e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1iuqA 367 5.08e+01 c.112.1.1 90703 1lo7A 141 5.11e+01 d.38.1.1 74144 1mtyB 384 5.14e+01 1mtyB a.25.1.2 16740 1hp1A 516 5.18e+01 d.114.1.1,d.159.1.2 70976,70977 1cc8A 73 5.25e+01 1cc8A d.58.17.1 39343 1lqtA 456 5.25e+01 c.3.1.1,c.4.1.1 74198,74199 1ah7 245 5.31e+01 1ah7 a.124.1.1 19339 1f1eA 154 5.34e+01 a.22.1.2 64927 1gu2A 124 5.35e+01 a.3.1.1 76348 1nbuA 119 5.42e+01 d.96.1.3 91767 1dcs 311 5.48e+01 1dcs b.82.2.1 28124 1io7A 368 5.58e+01 1f4tA a.104.1.1 18971 1dc1A 323 5.69e+01 1dc1A c.52.1.11 33321 1ew6A 137 5.69e+01 1ewaA a.1.1.2 15637 1m7yA 435 5.98e+01 c.67.1.4 78761 1h5uA 842 6.17e+01 1a8i c.87.1.4 60655 1ed8A 449 6.19e+01 1b8jA c.76.1.1 34988 1csh 435 6.21e+01 1csh a.103.1.1 18880 1hd2A 161 6.22e+01 c.47.1.10 60962 1kgsA 225 6.24e+01 a.4.6.1,c.23.1.1 68596,68597 1tl9A 339 6.27e+01 1n2eA 300 6.29e+01 c.26.1.4 85268 1lycA 343 6.30e+01 a.93.1.1 74344 1kq3A 376 6.37e+01 e.22.1.2 68790 1g2nA 264 6.63e+01 1lbd a.123.1.1 60227 1fiuA 286 6.77e+01 1fiuA c.52.1.10 33317 1iomA 377 6.78e+01 a.103.1.1 83698 1ng6A 148 6.83e+01 a.182.1.1 85670 1hx6A 394 6.84e+01 1cjdA b.121.2.1,b.121.2.1 58995,58996 1cqxA 403 6.92e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1j77A 209 7.10e+01 1j77A a.132.1.2 62674 1af7 274 7.15e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1io0A 185 7.25e+01 c.10.1.1 76753 1nc5A 373 7.28e+01 a.102.1.6 85548 1j79A 347 7.39e+01 1j79A c.1.9.4 62675 1tjxA 159 7.47e+01 1dfmA 223 7.48e+01 1d2iA c.52.1.5 33295 1iqzA 81 7.50e+01 d.58.1.4 66281 1nkiA 135 7.52e+01 d.32.1.2 91941 1ak0 270 7.52e+01 1ak0 a.124.1.2 19345 1d5tA 433 7.66e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1zoiA 276 7.75e+01 1a76 326 7.77e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1d2nA 272 7.81e+01 1d2nA c.37.1.20 32428 1ezwA 349 7.87e+01 1ezwA c.1.16.3 29558 1m33A 258 7.87e+01 c.69.1.26 78514 1j30A 144 7.98e+01 a.25.1.1 90806 1hbnB 442 8.04e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1i0dA 332 8.15e+01 1pscA c.1.9.3 61487 1h2bA 359 8.18e+01 b.35.1.2,c.2.1.1 90543,90544 1zelA 298 8.29e+01 1hfuA 503 8.29e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1lqvA 193 8.35e+01 d.19.1.1 74206 1ga6A 372 8.37e+01 1ga1A c.41.1.2 32556 1lfwA 470 8.41e+01 c.56.5.4,d.58.19.1 77942,77943 1a59 378 8.46e+01 1aj8A a.103.1.1 18902 1aie 31 8.63e+01 1aie a.53.1.1 17829 1edg 380 8.65e+01 1edg c.1.8.3 28807 1lopA 164 8.73e+01 2cpl b.62.1.1 27510 1cy5A 97 8.75e+01 1cy5A a.77.1.3 18430 1mk4A 157 8.85e+01 d.108.1.1 84979 1bgc 174 8.89e+01 1bgc a.26.1.1 16822 1h05A 146 8.96e+01 c.23.13.1 76433