# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b8zA 90 7.03e-02 1huuA a.55.1.1 17902 1gk9A 260 6.98e-01 d.153.1.2 65246 1kid 203 7.62e-01 1derA c.8.5.1 30771 1jigA 146 1.19e+00 a.25.1.1 71685 1ay7B 89 1.41e+00 1ay7B c.9.1.1 30836 1ars 396 1.79e+00 1ajsA c.67.1.1 34287 1evyA 366 1.97e+00 1evyA a.100.1.6,c.2.1.6 18811,30215 1g5aA 628 2.09e+00 b.71.1.1,c.1.8.1 65152,65153 1nox 205 2.10e+00 1nox d.90.1.1 40242 1ey4A 149 2.67e+00 1snc b.40.1.1 24815 1tn6A 382 2.90e+00 1akhA 61 3.47e+00 1akhA a.4.1.1 15980 1mtzA 293 3.49e+00 c.69.1.7 79467 1k07A 263 3.78e+00 d.157.1.1 77218 1tn6B 437 4.46e+00 1ne2A 200 4.71e+00 c.66.1.32 85586 1a0p 290 6.50e+00 1a0p a.60.9.1,d.163.1.1 18105,42165 1nkd 65 7.01e+00 1nkd a.30.1.1 16974 1gheA 177 7.05e+00 d.108.1.1 76222 1jr8A 117 7.14e+00 a.24.15.1 67115 1a5t 334 7.41e+00 1a5t a.80.1.1,c.37.1.20 18450,32423 1iab 200 7.54e+00 1iae d.92.1.8 40312 1h5uA 842 8.34e+00 1a8i c.87.1.4 60655 1h32A 261 8.45e+00 a.3.1.8,a.3.1.8 76618,76619 1e19A 314 8.52e+00 1b7bA c.73.1.1 34967 1a6m 151 8.64e+00 1a6m a.1.1.2 15018 1txgA 335 9.43e+00 1fiuA 286 1.11e+01 1fiuA c.52.1.10 33317 1rfyA 102 1.15e+01 1e6cA 173 1.22e+01 1shkA c.37.1.2 59296 1lo7A 141 1.28e+01 d.38.1.1 74144 1gx3A 284 1.30e+01 d.3.1.5 70678 1b6a 478 1.36e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1df4A 68 1.39e+01 1aikN h.3.2.1 45719 1a9xB 379 1.41e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1na3A 91 1.44e+01 k.38.1.1 85481 2d5cA 263 1.48e+01 1n97A 389 1.49e+01 a.104.1.1 80335 1ew6A 137 1.50e+01 1ewaA a.1.1.2 15637 1nbuA 119 1.56e+01 d.96.1.3 91767 1kw4A 89 1.61e+01 a.60.1.2 73077 1m2dA 110 1.65e+01 c.47.1.11 78476 1k6iA 352 1.70e+01 c.2.1.2 68223 1k3xA 262 1.87e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1lc0A 294 1.98e+01 c.2.1.3,d.81.1.4 73823,73824 1fj2A 232 2.06e+01 1auoA c.69.1.14 34720 1dytA 133 2.08e+01 7rsa d.5.1.1 37288 1iq4A 179 2.12e+01 1iq4A d.77.1.1 62641 1u0fA 564 2.15e+01 1n93X 375 2.16e+01 a.206.1.1 91707 1a0cA 438 2.21e+01 1a0cA c.1.15.3 29529 1k2xA 177 2.32e+01 d.153.1.5 90929 1c3cA 429 2.32e+01 1c3cA a.127.1.1 19425 1mla 309 2.42e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1ash 150 2.50e+01 1ash a.1.1.2 15622 1nofA 383 2.51e+01 b.71.1.2,c.1.8.3 92020,92021 1k3yA 221 2.55e+01 a.45.1.1,c.47.1.5 77245,77246 1eyeA 280 2.56e+01 1aj2 c.1.21.1 29672 1h99A 224 2.57e+01 a.142.1.1,a.142.1.1 60814,60815 1kjwA 295 2.60e+01 b.34.2.1,c.37.1.1 68643,68644 1bg6 359 2.61e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1bx4A 345 2.64e+01 1bx4A c.72.1.1 34935 1nkpA 88 2.67e+01 a.38.1.1 80573 1j77A 209 2.67e+01 1j77A a.132.1.2 62674 1d4oA 184 2.71e+01 1d4oA c.31.1.4 31748 1m1nB 522 2.72e+01 c.92.2.3 78418 1l1lA 739 2.81e+01 c.7.1.4 73470 1aisB 200 2.96e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1mgtA 174 3.00e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1l9xA 315 3.02e+01 c.23.16.1 73762 1ng6A 148 3.19e+01 a.182.1.1 85670 1csh 435 3.20e+01 1csh a.103.1.1 18880 1ail 73 3.33e+01 1ail a.16.1.1 16381 1a8l 226 3.41e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1lb3A 182 3.45e+01 a.25.1.1 77873 1m15A 357 3.46e+01 a.83.1.1,d.128.1.2 78368,78369 1hp1A 516 3.60e+01 d.114.1.1,d.159.1.2 70976,70977 1kgsA 225 3.63e+01 a.4.6.1,c.23.1.1 68596,68597 1mun 225 3.74e+01 1mun a.96.1.2 18744 1m33A 258 3.79e+01 c.69.1.26 78514 1n6aA 259 4.07e+01 b.76.2.1,b.85.7.1 80121,80122 1k7iA 479 4.15e+01 b.80.7.1,d.92.1.6 77281,77282 1ek6A 348 4.17e+01 1xel c.2.1.2 29800 1hbnB 442 4.24e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 16vpA 366 4.35e+01 16vpA d.180.1.1 42601 1kr7A 110 4.40e+01 a.1.1.4 72890 1duvG 333 4.42e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1mk4A 157 4.58e+01 d.108.1.1 84979 1m4lA 307 4.60e+01 c.56.5.1 78604 1i40A 175 4.64e+01 b.40.5.1 66024 1ezwA 349 4.65e+01 1ezwA c.1.16.3 29558 1dosA 358 4.69e+01 1dosA c.1.10.2 29175 1cy5A 97 4.72e+01 1cy5A a.77.1.3 18430 1nkiA 135 4.73e+01 d.32.1.2 91941 1r45A 204 4.74e+01 1j30A 144 4.81e+01 a.25.1.1 90806 1jakA 512 4.87e+01 c.1.8.6,d.92.2.1 66472,66473 1f1eA 154 5.31e+01 a.22.1.2 64927 1lqtA 456 5.34e+01 c.3.1.1,c.4.1.1 74198,74199 1io7A 368 5.36e+01 1f4tA a.104.1.1 18971 1af7 274 5.52e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1e6uA 321 5.55e+01 1bsvA c.2.1.2 29805 1g2nA 264 5.62e+01 1lbd a.123.1.1 60227 1s1fA 406 5.62e+01 1d2nA 272 5.66e+01 1d2nA c.37.1.20 32428 1ekqA 272 5.86e+01 1c3qA c.72.1.2 34941 1eca 136 5.90e+01 1flp a.1.1.2 15209 1h2bA 359 5.91e+01 b.35.1.2,c.2.1.1 90543,90544 1es9A 232 5.93e+01 1wab c.23.10.3 31340 1mqoA 227 5.97e+01 d.157.1.1 103846 1fsgA 233 6.07e+01 1qk3A c.61.1.1 34029 1jyhA 157 6.13e+01 d.60.1.3 71956 1iqzA 81 6.14e+01 d.58.1.4 66281 1lopA 164 6.17e+01 2cpl b.62.1.1 27510 1c1kA 217 6.22e+01 1c1kA a.120.1.1 19239 1a59 378 6.30e+01 1aj8A a.103.1.1 18902 1bs0A 384 6.30e+01 1bs0A c.67.1.4 34490 1aqcA 172 6.39e+01 1x11A b.55.1.2 26983 1cc8A 73 6.50e+01 1cc8A d.58.17.1 39343 1el5A 389 6.52e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1gbs 185 6.57e+01 153l d.2.1.5 36986 1cex 214 6.68e+01 1cex c.69.1.30 31285 2cfuA 658 6.78e+01 1e7lA 157 6.83e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1l9lA 74 6.84e+01 a.64.1.1 77827 1q6zA 528 6.90e+01 1elwA 118 6.90e+01 1a17 a.118.8.1 19207 1jykA 254 7.01e+01 c.68.1.13 67458 1l5oA 356 7.04e+01 c.39.1.1 77711 1lycA 343 7.13e+01 a.93.1.1 74344 1j6oA 268 7.19e+01 c.1.9.12 77088 1m1nA 491 7.22e+01 c.92.2.3 78417 1cb0A 283 7.31e+01 1cb0A c.56.2.1 33790 1apyA 162 7.43e+01 1apyA d.153.1.5 42004 1e58A 249 7.45e+01 1qhfA c.60.1.1 59262 1koe 172 7.46e+01 1koe d.169.1.5 42448 1io0A 185 7.49e+01 c.10.1.1 76753 1gu2A 124 7.62e+01 a.3.1.1 76348 1n2eA 300 7.62e+01 c.26.1.4 85268 1dmgA 225 7.64e+01 1dmgA c.22.1.1 31036 1ix9A 205 7.67e+01 a.2.11.1,d.44.1.1 76899,76900 1eyhA 144 7.72e+01 1eduA a.118.9.1 19214 1chd 203 7.95e+01 1chd c.40.1.1 32478 1c1dA 355 7.98e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1jpzA 473 8.11e+01 a.104.1.1 67069 1bupA 386 8.14e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1cqxA 403 8.24e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1iv3A 152 8.27e+01 d.79.5.1 76828 1n40A 396 8.28e+01 a.104.1.1 79977 1dfmA 223 8.32e+01 1d2iA c.52.1.5 33295 1nqzA 194 8.33e+01 d.113.1.1 86077 1in6A 334 8.38e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1gutA 68 8.48e+01 b.40.6.1 65576 1lk9A 448 8.54e+01 c.67.1.1 78057 1sg4A 260 8.56e+01 1d8wA 426 8.57e+01 1de5A c.1.15.2 29394 1m93B 245 8.58e+01 1s99A 200 8.63e+01 1fcyA 236 8.67e+01 2lbd a.123.1.1 19282 1am2 199 8.71e+01 1am2 b.86.1.2 28381