# TARGET T0283 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0283.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.04591 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.007 0.001 0.001 0.989 2 S 0.009 0.011 0.011 0.436 0.005 0.024 0.504 3 F 0.004 0.003 0.014 0.866 0.018 0.030 0.065 4 I 0.002 0.001 0.008 0.946 0.006 0.006 0.032 5 E 0.002 0.001 0.012 0.971 0.003 0.005 0.008 6 K 0.004 0.001 0.020 0.954 0.003 0.011 0.007 7 M 0.005 0.001 0.022 0.928 0.003 0.031 0.009 8 I 0.006 0.004 0.021 0.886 0.009 0.065 0.010 9 G 0.006 0.001 0.026 0.674 0.033 0.233 0.026 10 S 0.010 0.004 0.027 0.581 0.056 0.188 0.133 11 L 0.005 0.008 0.050 0.720 0.038 0.109 0.071 12 N 0.003 0.002 0.068 0.531 0.074 0.223 0.098 13 D 0.005 0.004 0.054 0.548 0.080 0.183 0.127 14 K 0.003 0.002 0.021 0.864 0.019 0.035 0.056 15 R 0.003 0.001 0.013 0.916 0.016 0.022 0.030 16 E 0.003 0.001 0.012 0.919 0.011 0.022 0.032 17 W 0.001 0.001 0.004 0.960 0.005 0.013 0.016 18 K 0.001 0.001 0.002 0.978 0.004 0.008 0.007 19 A 0.001 0.001 0.004 0.969 0.003 0.014 0.009 20 M 0.001 0.001 0.002 0.978 0.002 0.009 0.009 21 E 0.001 0.001 0.001 0.989 0.001 0.005 0.003 22 A 0.001 0.001 0.001 0.987 0.001 0.009 0.001 23 R 0.001 0.001 0.005 0.972 0.001 0.020 0.002 24 A 0.001 0.001 0.032 0.934 0.004 0.027 0.003 25 K 0.001 0.001 0.058 0.769 0.004 0.164 0.003 26 A 0.001 0.001 0.061 0.448 0.017 0.466 0.008 27 L 0.002 0.007 0.004 0.062 0.580 0.061 0.286 28 P 0.001 0.005 0.009 0.046 0.023 0.023 0.893 29 K 0.001 0.001 0.139 0.708 0.018 0.124 0.010 30 E 0.001 0.001 0.103 0.792 0.010 0.084 0.010 31 Y 0.001 0.001 0.025 0.948 0.002 0.017 0.007 32 H 0.001 0.001 0.002 0.991 0.001 0.004 0.002 33 H 0.001 0.001 0.001 0.993 0.001 0.004 0.001 34 A 0.001 0.001 0.001 0.993 0.001 0.004 0.001 35 Y 0.001 0.001 0.001 0.997 0.001 0.002 0.001 36 K 0.001 0.001 0.001 0.998 0.001 0.002 0.001 37 A 0.001 0.001 0.001 0.997 0.001 0.003 0.001 38 I 0.001 0.001 0.001 0.996 0.001 0.003 0.001 39 Q 0.001 0.001 0.001 0.994 0.001 0.003 0.001 40 K 0.001 0.001 0.002 0.980 0.001 0.017 0.001 41 Y 0.001 0.001 0.003 0.945 0.001 0.045 0.004 42 M 0.007 0.003 0.012 0.892 0.010 0.057 0.020 43 W 0.032 0.006 0.040 0.712 0.050 0.103 0.057 44 T 0.043 0.006 0.049 0.599 0.054 0.159 0.090 45 S 0.037 0.010 0.034 0.293 0.191 0.234 0.202 46 G 0.026 0.020 0.018 0.079 0.369 0.152 0.337 47 G 0.027 0.012 0.010 0.016 0.434 0.091 0.410 48 P 0.033 0.023 0.043 0.032 0.211 0.213 0.444 49 T 0.043 0.032 0.047 0.031 0.278 0.163 0.405 50 D 0.050 0.029 0.061 0.052 0.239 0.118 0.451 51 W 0.025 0.014 0.172 0.395 0.094 0.139 0.161 52 Q 0.011 0.005 0.129 0.551 0.061 0.188 0.056 53 D 0.011 0.010 0.121 0.521 0.067 0.166 0.103 54 T 0.004 0.003 0.044 0.848 0.012 0.040 0.051 55 K 0.002 0.001 0.038 0.908 0.008 0.025 0.018 56 R 0.002 0.001 0.032 0.929 0.005 0.023 0.009 57 I 0.001 0.001 0.023 0.949 0.003 0.019 0.005 58 F 0.001 0.001 0.004 0.974 0.003 0.012 0.005 59 G 0.001 0.001 0.003 0.969 0.001 0.026 0.001 60 G 0.001 0.001 0.002 0.965 0.001 0.031 0.001 61 I 0.001 0.001 0.002 0.979 0.001 0.014 0.003 62 L 0.001 0.001 0.001 0.992 0.001 0.003 0.002 63 D 0.001 0.001 0.001 0.991 0.001 0.005 0.001 64 L 0.001 0.001 0.001 0.991 0.001 0.006 0.001 65 F 0.001 0.001 0.001 0.988 0.001 0.008 0.001 66 E 0.001 0.001 0.001 0.985 0.001 0.008 0.003 67 E 0.001 0.001 0.001 0.984 0.001 0.009 0.004 68 G 0.002 0.001 0.004 0.960 0.004 0.022 0.007 69 A 0.003 0.001 0.005 0.932 0.007 0.039 0.013 70 A 0.009 0.004 0.013 0.824 0.025 0.103 0.021 71 E 0.001 0.001 0.005 0.234 0.013 0.741 0.007 72 G 0.001 0.001 0.002 0.009 0.035 0.928 0.025 73 K 0.028 0.011 0.002 0.005 0.131 0.011 0.812 74 K 0.193 0.123 0.003 0.004 0.030 0.005 0.643 75 V 0.149 0.025 0.193 0.128 0.030 0.021 0.453 76 T 0.117 0.005 0.382 0.187 0.060 0.035 0.214 77 D 0.102 0.008 0.448 0.225 0.046 0.063 0.109 78 L 0.129 0.046 0.164 0.193 0.099 0.103 0.266 79 T 0.049 0.027 0.042 0.161 0.153 0.127 0.440 80 G 0.005 0.004 0.051 0.400 0.170 0.138 0.232 81 E 0.002 0.002 0.044 0.651 0.118 0.130 0.053 82 D 0.004 0.006 0.049 0.743 0.055 0.077 0.067 83 V 0.001 0.001 0.014 0.972 0.002 0.007 0.005 84 A 0.001 0.001 0.007 0.984 0.001 0.006 0.001 85 A 0.001 0.001 0.004 0.981 0.001 0.013 0.001 86 F 0.001 0.001 0.003 0.974 0.001 0.018 0.004 87 C 0.001 0.001 0.001 0.993 0.001 0.002 0.003 88 D 0.001 0.001 0.003 0.992 0.001 0.003 0.001 89 E 0.001 0.001 0.002 0.987 0.001 0.010 0.001 90 L 0.001 0.001 0.006 0.953 0.001 0.038 0.001 91 M 0.001 0.001 0.014 0.863 0.005 0.112 0.004 92 K 0.001 0.001 0.021 0.573 0.015 0.366 0.025 93 D 0.002 0.003 0.029 0.371 0.135 0.234 0.227 94 T 0.003 0.005 0.041 0.352 0.141 0.131 0.326 95 K 0.005 0.003 0.034 0.266 0.210 0.069 0.412 96 T 0.011 0.012 0.032 0.546 0.088 0.059 0.252 97 W 0.005 0.004 0.030 0.871 0.013 0.033 0.044 98 M 0.001 0.001 0.011 0.943 0.004 0.014 0.025 99 D 0.001 0.001 0.006 0.974 0.004 0.008 0.006 100 K 0.001 0.001 0.004 0.979 0.003 0.009 0.004 101 Y 0.001 0.001 0.003 0.977 0.001 0.013 0.005 102 R 0.001 0.001 0.003 0.983 0.002 0.007 0.004 103 T 0.001 0.001 0.003 0.984 0.001 0.009 0.001 104 K 0.001 0.001 0.003 0.966 0.001 0.025 0.004 105 L 0.001 0.001 0.005 0.933 0.003 0.041 0.015 106 N 0.003 0.002 0.016 0.872 0.014 0.056 0.038 107 D 0.005 0.001 0.049 0.759 0.025 0.126 0.036 108 S 0.008 0.002 0.041 0.750 0.032 0.109 0.058 109 I 0.016 0.011 0.046 0.584 0.082 0.146 0.115 110 G 0.023 0.011 0.027 0.314 0.103 0.326 0.196 111 R 0.025 0.009 0.024 0.150 0.078 0.225 0.490 112 D 0.007 0.002 0.006 0.018 0.024 0.018 0.925