# TARGET T0283 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0283.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.04591 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.538 0.104 0.166 0.064 0.042 0.019 0.029 0.018 0.009 0.010 0.001 2 S 0.780 0.042 0.084 0.036 0.014 0.014 0.017 0.005 0.004 0.004 0.001 3 F 0.945 0.014 0.010 0.019 0.002 0.005 0.001 0.001 0.002 0.001 0.001 4 I 0.982 0.005 0.004 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.994 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 K 0.989 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 M 0.964 0.003 0.004 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 I 0.876 0.014 0.023 0.077 0.002 0.002 0.002 0.001 0.004 0.001 0.001 9 G 0.654 0.003 0.016 0.028 0.015 0.001 0.033 0.192 0.001 0.059 0.001 10 S 0.705 0.016 0.059 0.186 0.007 0.016 0.003 0.001 0.004 0.002 0.001 11 L 0.713 0.025 0.038 0.194 0.004 0.012 0.005 0.002 0.007 0.001 0.001 12 N 0.800 0.006 0.042 0.087 0.004 0.007 0.044 0.004 0.002 0.005 0.001 13 D 0.509 0.015 0.047 0.318 0.018 0.024 0.036 0.019 0.012 0.003 0.001 14 K 0.805 0.023 0.064 0.089 0.003 0.010 0.003 0.001 0.003 0.001 0.001 15 R 0.836 0.027 0.060 0.036 0.006 0.008 0.013 0.006 0.005 0.002 0.001 16 E 0.902 0.012 0.041 0.025 0.003 0.007 0.002 0.001 0.003 0.003 0.001 17 W 0.979 0.001 0.004 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 K 0.991 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 A 0.980 0.001 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 M 0.981 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 E 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 R 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 A 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 K 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 A 0.434 0.001 0.005 0.556 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.052 0.036 0.776 0.014 0.004 0.018 0.008 0.001 0.090 0.001 0.001 28 P 0.117 0.003 0.848 0.002 0.001 0.024 0.001 0.001 0.002 0.001 0.002 29 K 0.993 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 E 0.985 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 Y 0.959 0.001 0.002 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 H 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 H 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 A 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 Q 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.978 0.002 0.002 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 Y 0.726 0.005 0.007 0.248 0.002 0.002 0.004 0.001 0.003 0.001 0.001 42 M 0.739 0.025 0.035 0.148 0.004 0.016 0.013 0.002 0.016 0.001 0.001 43 W 0.507 0.094 0.145 0.137 0.033 0.039 0.017 0.004 0.011 0.012 0.001 44 T 0.442 0.073 0.140 0.249 0.029 0.032 0.014 0.005 0.011 0.005 0.001 45 S 0.310 0.100 0.147 0.273 0.073 0.017 0.039 0.015 0.019 0.007 0.001 46 G 0.169 0.046 0.222 0.140 0.132 0.009 0.039 0.167 0.008 0.066 0.002 47 G 0.060 0.025 0.288 0.008 0.169 0.006 0.014 0.037 0.010 0.382 0.001 48 P 0.504 0.011 0.197 0.204 0.005 0.025 0.003 0.003 0.002 0.002 0.043 49 T 0.327 0.121 0.131 0.259 0.115 0.012 0.011 0.009 0.008 0.008 0.001 50 D 0.148 0.079 0.145 0.286 0.067 0.106 0.077 0.021 0.061 0.008 0.001 51 W 0.494 0.053 0.111 0.245 0.012 0.043 0.013 0.006 0.021 0.003 0.001 52 Q 0.805 0.032 0.055 0.081 0.009 0.006 0.005 0.002 0.003 0.002 0.001 53 D 0.534 0.007 0.033 0.253 0.005 0.044 0.094 0.010 0.017 0.002 0.001 54 T 0.800 0.011 0.022 0.147 0.002 0.010 0.004 0.001 0.003 0.001 0.001 55 K 0.922 0.009 0.021 0.038 0.002 0.003 0.003 0.001 0.001 0.001 0.001 56 R 0.931 0.005 0.012 0.026 0.002 0.007 0.010 0.003 0.003 0.001 0.001 57 I 0.932 0.007 0.007 0.049 0.001 0.002 0.001 0.001 0.001 0.001 0.001 58 F 0.910 0.007 0.010 0.065 0.001 0.003 0.001 0.001 0.002 0.001 0.001 59 G 0.920 0.002 0.013 0.017 0.003 0.001 0.017 0.016 0.001 0.011 0.001 60 G 0.914 0.001 0.003 0.039 0.002 0.002 0.018 0.020 0.001 0.002 0.001 61 I 0.970 0.002 0.002 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.978 0.006 0.007 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 63 D 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 L 0.985 0.002 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 F 0.987 0.002 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 E 0.988 0.003 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 E 0.947 0.003 0.003 0.046 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 G 0.940 0.004 0.011 0.027 0.003 0.001 0.006 0.006 0.001 0.002 0.001 69 A 0.949 0.008 0.012 0.022 0.002 0.003 0.001 0.001 0.001 0.001 0.001 70 A 0.894 0.018 0.018 0.060 0.003 0.002 0.002 0.001 0.002 0.001 0.001 71 E 0.388 0.011 0.143 0.437 0.003 0.003 0.012 0.001 0.002 0.001 0.001 72 G 0.007 0.001 0.002 0.015 0.001 0.001 0.191 0.779 0.001 0.003 0.001 73 K 0.008 0.210 0.741 0.004 0.008 0.018 0.002 0.001 0.009 0.001 0.001 74 K 0.009 0.156 0.746 0.004 0.004 0.071 0.002 0.001 0.008 0.001 0.001 75 V 0.204 0.320 0.362 0.009 0.008 0.081 0.001 0.001 0.014 0.001 0.001 76 T 0.901 0.017 0.004 0.073 0.002 0.001 0.001 0.001 0.001 0.001 0.001 77 D 0.246 0.211 0.125 0.149 0.166 0.044 0.028 0.002 0.027 0.001 0.001 78 L 0.315 0.291 0.234 0.065 0.017 0.039 0.004 0.001 0.032 0.001 0.001 79 T 0.171 0.259 0.279 0.200 0.025 0.032 0.005 0.001 0.025 0.003 0.001 80 G 0.145 0.032 0.200 0.014 0.162 0.007 0.013 0.060 0.006 0.359 0.001 81 E 0.974 0.002 0.008 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 D 0.941 0.003 0.012 0.023 0.001 0.013 0.002 0.001 0.005 0.001 0.001 83 V 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 A 0.983 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 F 0.966 0.001 0.001 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 C 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 D 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 E 0.988 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 L 0.925 0.001 0.001 0.074 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 M 0.818 0.011 0.082 0.058 0.001 0.020 0.002 0.001 0.007 0.001 0.001 92 K 0.645 0.008 0.037 0.278 0.003 0.007 0.014 0.005 0.002 0.002 0.001 93 D 0.468 0.046 0.155 0.210 0.009 0.032 0.058 0.005 0.017 0.001 0.001 94 T 0.314 0.060 0.083 0.461 0.011 0.017 0.025 0.016 0.011 0.001 0.001 95 K 0.318 0.075 0.223 0.106 0.036 0.069 0.107 0.028 0.024 0.013 0.001 96 T 0.429 0.157 0.193 0.112 0.043 0.034 0.009 0.005 0.014 0.004 0.001 97 W 0.745 0.023 0.034 0.142 0.008 0.022 0.008 0.004 0.011 0.005 0.001 98 M 0.902 0.018 0.041 0.021 0.003 0.007 0.002 0.001 0.004 0.002 0.001 99 D 0.974 0.001 0.006 0.012 0.001 0.003 0.002 0.001 0.001 0.001 0.001 100 K 0.983 0.001 0.002 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 Y 0.949 0.004 0.004 0.040 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 R 0.985 0.002 0.003 0.004 0.001 0.002 0.003 0.001 0.001 0.001 0.001 103 T 0.988 0.003 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 K 0.959 0.003 0.004 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 L 0.841 0.006 0.011 0.136 0.001 0.002 0.001 0.001 0.002 0.001 0.001 106 N 0.714 0.019 0.036 0.107 0.005 0.027 0.074 0.008 0.008 0.003 0.001 107 D 0.753 0.033 0.049 0.118 0.011 0.010 0.015 0.003 0.005 0.002 0.001 108 S 0.742 0.036 0.083 0.103 0.009 0.012 0.006 0.002 0.006 0.001 0.001 109 I 0.506 0.115 0.098 0.252 0.010 0.008 0.002 0.001 0.009 0.001 0.001 110 G 0.265 0.104 0.185 0.105 0.085 0.030 0.077 0.072 0.024 0.051 0.001 111 R 0.254 0.205 0.293 0.128 0.028 0.032 0.015 0.004 0.033 0.006 0.001 112 D 0.274 0.091 0.236 0.131 0.043 0.045 0.112 0.030 0.021 0.016 0.002