# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tffA 234 5.01e-02 d.3.1.11 106854 2ex3B 264 1.22e+00 1qghA 156 2.26e+00 1qghA a.25.1.1 16728 1tx4A 198 3.17e+00 1tx4A a.116.1.1 19098 1kz7A 353 3.18e+00 a.87.1.1,b.55.1.1 73333,73334 2fh5A 185 3.97e+00 2g7lA 243 4.57e+00 1vprA 374 5.29e+00 1wl9A 440 5.37e+00 1vpqA 273 5.37e+00 2bwvA 440 5.93e+00 1z4eA 153 5.99e+00 1az9 457 6.06e+00 1az9 c.55.2.1,d.127.1.1 33547,41164 1sheA 103 6.22e+00 d.274.1.1 105551 1dbhA 354 6.74e+00 1awe a.87.1.1,b.55.1.1 18514,26967 1csn 298 7.34e+00 1csn d.144.1.7 41664 1guxB 152 7.69e+00 1guxB a.74.1.3 18389 1mw5A 187 7.74e+00 d.259.1.1 91477 1e3aA 260 8.85e+00 1ajqA d.153.1.2 41838 1i0dA 332 1.02e+01 1pscA c.1.9.3 61487 1hzyA 332 1.05e+01 1pscA c.1.9.3 61468 2f6hX 419 1.07e+01 1z00B 84 1.08e+01 1k8kA 418 1.12e+01 c.55.1.1,c.55.1.1 68305,68306 1m3uA 264 1.15e+01 c.1.12.8 84784 1hziA 129 1.18e+01 1rcb a.26.1.2 61449 1q1hA 110 1.20e+01 a.4.5.41 95580 1egiA 147 1.28e+01 1eggA d.169.1.1 42331 1xmkA 79 1.37e+01 1ea9C 583 1.43e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1em9A 154 1.44e+01 1d1dA a.73.1.1 18333 2hpaA 342 1.44e+01 1cviA c.60.1.2 33985 1f2eA 201 1.49e+01 1a0fA a.45.1.1,c.47.1.5 17745,33039 1ydmA 187 1.58e+01 2b8wA 328 1.60e+01 1n1cA 217 1.61e+01 a.184.1.1 85254 1rcb 129 1.67e+01 1rcb a.26.1.2 16854 1l9xA 315 1.69e+01 c.23.16.1 73762 1oroA 213 1.70e+01 1opr c.61.1.1 34093 1q44A 326 1.80e+01 c.37.1.5 95779 1gk9A 260 1.80e+01 d.153.1.2 65246 1opr 213 1.84e+01 1opr c.61.1.1 34091 1usmA 80 1.86e+01 d.74.1.1 99876 1e7rA 321 1.97e+01 1bsvA c.2.1.2 29808 1vgwA 231 2.03e+01 c.68.1.13 100612 1ajsA 412 2.08e+01 1ajsA c.67.1.1 34276 1jmsA 381 2.13e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1x9bA 53 2.15e+01 2a0iA 330 2.18e+01 1f75A 249 2.27e+01 1f75A c.101.1.1 59662 1cjbA 231 2.27e+01 1qk3A c.61.1.1 34079 1xv5A 401 2.32e+01 1i1iP 681 2.33e+01 1i1iP d.92.1.5 40297 1xqwA 293 2.34e+01 1kw4A 89 2.35e+01 a.60.1.2 73077 2be4A 272 2.39e+01 1colA 204 2.43e+01 1a87 f.1.1.1 43378 1nd6A 354 2.44e+01 c.60.1.2 80407 1c1kA 217 2.50e+01 1c1kA a.120.1.1 19239 1e6uA 321 2.51e+01 1bsvA c.2.1.2 29805 1onqA 283 2.59e+01 b.1.1.2,d.19.1.1 93365,93366 1uvjA 664 2.60e+01 e.8.1.6 100045 1fo3A 460 2.60e+01 1dl2A a.102.2.1 18845 1e94F 449 2.62e+01 1do0A c.37.1.20 32443 1q5yA 85 2.66e+01 d.58.18.4 95950 1dcs 311 2.70e+01 1dcs b.82.2.1 28124 1hhsA 664 2.72e+01 1hi0P e.8.1.6 61045 1ymqA 261 2.73e+01 1cc1L 498 2.77e+01 1h2rL e.18.1.1 43301 1r9cA 139 2.77e+01 d.32.1.2 97255 1vkmA 297 2.84e+01 c.138.1.1 108670 1yz7A 188 2.85e+01 1poiA 317 2.86e+01 1poiA c.124.1.2 34153 1fsgA 233 2.89e+01 1qk3A c.61.1.1 34029 1rro 108 2.93e+01 1a75A a.39.1.4 17195 1mtzA 293 2.99e+01 c.69.1.7 79467 1kqzA 273 3.02e+01 c.1.8.5 68844 1f4pA 147 3.10e+01 5nul c.23.5.1 59651 1qpaA 345 3.16e+01 1arv a.93.1.1 18585 1s2xA 206 3.19e+01 a.47.3.1 105229 2aamA 309 3.22e+01 1dytA 133 3.23e+01 7rsa d.5.1.1 37288 2essA 248 3.24e+01 1wlsA 328 3.25e+01 1v8cA 168 3.32e+01 d.15.3.1,d.129.5.1 100495,100496 1ey4A 149 3.35e+01 1snc b.40.1.1 24815 1xbtA 193 3.46e+01 1w4rA 195 3.49e+01 1eiwA 111 3.53e+01 1eiwA c.23.3.1 31130 1lq7A 67 3.65e+01 k.9.1.1 74183 3pyp 125 3.71e+01 3pyp d.110.3.1 40897 2end 138 3.73e+01 2end a.18.1.1 16400 1o08A 221 3.75e+01 c.108.1.6 86525 1x9dA 538 3.89e+01 1ss4A 153 3.90e+01 d.32.1.6 105976 1kktA 511 3.90e+01 a.102.2.1 68687 1hjzA 192 3.91e+01 c.50.1.2 83520 1zsyA 357 3.97e+01 1grj 158 4.01e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2anuA 255 4.09e+01 1ni3A 392 4.14e+01 c.37.1.8,d.15.10.2 80531,80532 1hlvA 131 4.15e+01 a.4.1.7,a.4.1.7 65854,65855 1oaoA 674 4.17e+01 e.26.1.2 86744 1ydgA 211 4.27e+01 1f1mA 164 4.27e+01 1ggqA a.24.12.1 59598 2f4qA 346 4.31e+01 1vpmA 169 4.39e+01 2sns 149 4.45e+01 1snc b.40.1.1 24860 2cruA 118 4.46e+01 7aatA 401 4.56e+01 1ajsA c.67.1.1 34250 1q0pA 223 4.63e+01 c.62.1.1 95507 1rw6A 210 4.64e+01 a.47.4.1 105113 1u6tA 121 4.66e+01 1tuzA 118 4.74e+01 1or4A 178 4.86e+01 a.1.1.2 93447 1wmiA 90 4.95e+01 1vhuA 211 4.95e+01 c.50.1.2 100703 1nwzA 125 5.02e+01 d.110.3.1 86370 1r45A 204 5.07e+01 2gf9A 189 5.17e+01 1akhA 61 5.22e+01 1akhA a.4.1.1 15980 2cqnA 77 5.30e+01 1bouB 302 5.30e+01 1bouB c.56.6.1 33859 1wgzA 510 5.36e+01 1mq4A 272 5.37e+01 d.144.1.7 91391 1iw0A 215 5.55e+01 a.132.1.1 83720 1mojA 182 5.56e+01 a.25.1.1 91367 1ekeA 230 5.61e+01 1ekeA c.55.3.1 33572 1tq8A 163 5.62e+01 c.26.2.4 107204 1li1A 229 5.71e+01 d.169.1.6,d.169.1.6 73898,73899 1z6nA 167 5.73e+01 1m1zA 513 5.80e+01 c.26.2.1,d.153.1.1 78457,78458 1tufA 434 5.82e+01 b.49.2.3,c.1.6.1 107335,107336 2ax6A 256 5.87e+01 2fw2A 260 5.89e+01 1o5xA 248 5.92e+01 c.1.1.1 92528 1winA 143 5.93e+01 1wzdA 215 5.93e+01 1d8wA 426 6.03e+01 1de5A c.1.15.2 29394 2d2jA 329 6.03e+01 1vjrA 271 6.11e+01 c.108.1.14 100832 1orjA 130 6.13e+01 a.24.19.1 93456 1n3oA 252 6.18e+01 b.29.1.1 79967 1qj2B 809 6.20e+01 1qj2B 1qrvA 73 6.26e+01 1cktA a.21.1.1 16425 1xqoA 256 6.27e+01 1i6wA 181 6.28e+01 1i6wA c.69.1.18 61859 1apyA 162 6.28e+01 1apyA d.153.1.5 42004 1b3uA 588 6.31e+01 1b3uA a.118.1.2 19135 1ukgA 252 6.37e+01 b.29.1.1 99489 1t61A 229 6.50e+01 d.169.1.6,d.169.1.6 106529,106530 1hb6A 86 6.51e+01 a.11.1.1 70959 2d2yA 145 6.55e+01 1mkp 144 6.58e+01 1vhrA c.45.1.1 32654 1chuA 540 6.60e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1afrA 345 6.70e+01 1afrA a.25.1.2 16805 4pah 308 6.70e+01 4pah d.178.1.1 42576 1urfA 81 6.77e+01 a.2.6.1 99827 1v52A 133 6.77e+01 2cwyA 94 6.78e+01 1j8uA 325 6.80e+01 d.178.1.1 71611 1wryA 121 6.82e+01 1w9cA 321 6.82e+01 1t7vA 278 6.84e+01 1nnwA 252 6.89e+01 d.159.1.5 80674 1v3rA 116 6.90e+01 1j0hA 588 6.92e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1su8A 636 6.93e+01 e.26.1.2 98999 1m3iA 471 6.93e+01 f.9.1.1 91178 1fj2A 232 6.96e+01 1auoA c.69.1.14 34720 1gvnB 287 7.11e+01 c.37.1.21 76354 1oq9A 363 7.15e+01 a.25.1.2 87257 1twiA 434 7.20e+01 b.49.2.3,c.1.6.1 107399,107400 1jjyA 636 7.43e+01 1jjyA 1tjoA 182 7.50e+01 1hdiA 413 7.53e+01 16pk c.86.1.1 60964 1l1zA 274 7.53e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1f7cA 231 7.67e+01 1f7cA a.116.1.1 19107 1eq1A 166 7.70e+01 a.63.1.1 64910 1ispA 181 7.78e+01 c.69.1.18 76778 1pfo 500 7.81e+01 1pfo f.9.1.1 43826 1vrbA 342 7.86e+01 1rvkA 382 7.86e+01 c.1.11.2,d.54.1.1 97928,97929 1gkzA 388 7.86e+01 a.29.5.1,d.122.1.4 65268,65269 1wmmA 145 7.92e+01 2a2fX 325 7.92e+01 1or3A 165 7.94e+01 1nfn a.24.1.1 16522 1lh0A 213 8.07e+01 c.61.1.1 73896 2eboA 74 8.10e+01 2eboA h.3.2.1 45754 1hgxA 183 8.23e+01 1tc1A c.61.1.1 34027 1urvA 190 8.27e+01 1ut0A 190 8.27e+01 a.1.1.2 108012 1wl8A 189 8.27e+01 1vjxA 157 8.33e+01 a.25.1.1 100837 1pbwA 216 8.35e+01 1pbwA a.116.1.1 19103 1kjwA 295 8.37e+01 b.34.2.1,c.37.1.1 68643,68644 1oboA 169 8.52e+01 c.23.5.1 86776 1wnfA 328 8.54e+01 1lk2A 274 8.61e+01 b.1.1.2,d.19.1.1 91056,91057 1r2zA 274 8.62e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1bvyF 191 8.65e+01 1bvyF c.23.5.1 31207 1yeyA 444 8.69e+01 2a14A 263 8.72e+01 1okiA 210 8.75e+01 b.11.1.1,b.11.1.1 93255,93256 1f5nA 592 8.76e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1h6zA 913 8.82e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1ui5A 215 8.86e+01 a.4.1.9,a.121.1.1 107856,107857 1zxiB 809 8.99e+01