# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wgzA 510 7.54e-01 1colA 204 1.35e+00 1a87 f.1.1.1 43378 1tffA 234 1.60e+00 d.3.1.11 106854 1qkrA 188 1.66e+00 1qkrA a.24.9.1 16628 1b8zA 90 1.78e+00 1huuA a.55.1.1 17902 1tx4A 198 1.85e+00 1tx4A a.116.1.1 19098 1csn 298 2.21e+00 1csn d.144.1.7 41664 1r1hA 696 2.41e+00 d.92.1.4 104756 1mojA 182 2.52e+00 a.25.1.1 91367 1tjoA 182 2.52e+00 2fbwC 141 3.36e+00 1nd6A 354 3.69e+00 c.60.1.2 80407 1yz7A 188 3.85e+00 1qghA 156 3.98e+00 1qghA a.25.1.1 16728 1e3aA 260 4.05e+00 1ajqA d.153.1.2 41838 2hpaA 342 4.13e+00 1cviA c.60.1.2 33985 1srvA 145 4.48e+00 1derA c.8.5.1 30817 1dmtA 696 4.68e+00 1dmtA d.92.1.4 40296 1gk9A 260 4.73e+00 d.153.1.2 65246 1dbhA 354 4.74e+00 1awe a.87.1.1,b.55.1.1 18514,26967 1wlsA 328 5.20e+00 1spgB 147 5.30e+00 1cg5B a.1.1.2 15588 2fflA 756 5.83e+00 1sheA 103 5.97e+00 d.274.1.1 105551 1nwzA 125 7.89e+00 d.110.3.1 86370 3pyp 125 7.89e+00 3pyp d.110.3.1 40897 1l9hA 349 8.17e+00 f.13.1.2 73720 1gvhA 396 8.77e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1az9 457 8.85e+00 1az9 c.55.2.1,d.127.1.1 33547,41164 1wl9A 440 8.86e+00 2bwvA 440 8.86e+00 1u19A 349 9.46e+00 1kid 203 1.13e+01 1derA c.8.5.1 30771 1hzxA 349 1.18e+01 1f88A f.13.1.2 61466 2ahrA 259 1.20e+01 1iq8A 582 1.24e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1z00B 84 1.25e+01 1urvA 190 1.26e+01 1ut0A 190 1.26e+01 a.1.1.2 108012 1z4eA 153 1.35e+01 2gdzA 267 1.39e+01 1ede 310 1.41e+01 1b6g c.69.1.8 34662 1w7jA 795 1.47e+01 1em9A 154 1.49e+01 1d1dA a.73.1.1 18333 1b6g 310 1.50e+01 1b6g c.69.1.8 34661 2abqA 306 1.51e+01 1u59A 287 1.52e+01 d.144.1.7 107681 2ex3B 264 1.52e+01 1qs1A 462 1.54e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1v9dA 340 1.62e+01 a.207.1.1 100535 1nm2A 317 1.63e+01 c.19.1.1,d.58.23.1 80654,80655 1nrjB 218 1.77e+01 c.37.1.8 86125 1qojA 63 1.80e+01 1qojA a.2.9.1 15716 2cqnA 77 1.83e+01 1vkmA 297 1.85e+01 c.138.1.1 108670 1yt3A 375 1.93e+01 2aelA 374 1.93e+01 1w33A 181 2.01e+01 2eboA 74 2.02e+01 2eboA h.3.2.1 45754 1j8uA 325 2.03e+01 d.178.1.1 71611 1tn6A 382 2.04e+01 1rw6A 210 2.10e+01 a.47.4.1 105113 1nox 205 2.17e+01 1nox d.90.1.1 40242 1d8dA 377 2.22e+01 1ft1A a.118.6.1 19185 2mgg 154 2.23e+01 1a6m a.1.1.2 15069 1yjsA 419 2.34e+01 4pah 308 2.41e+01 4pah d.178.1.1 42576 1vin 268 2.44e+01 1vin a.74.1.1,a.74.1.1 18354,18355 1kl1A 419 2.52e+01 c.67.1.4 72663 1xewX 182 2.54e+01 2bh9A 489 2.64e+01 1kz7A 353 2.65e+01 a.87.1.1,b.55.1.1 73333,73334 2bx2L 517 2.69e+01 1io7A 368 2.72e+01 1f4tA a.104.1.1 18971 1n1cA 217 2.74e+01 a.184.1.1 85254 1xfiA 367 2.74e+01 e.50.1.1 109584 1tq8A 163 2.79e+01 c.26.2.4 107204 1ld8A 382 2.87e+01 a.118.6.1 73838 1fmhB 33 2.87e+01 1fmhB k.6.1.1 46410 2fh5A 185 2.90e+01 1s2xA 206 2.96e+01 a.47.3.1 105229 2anuA 255 2.97e+01 1vgmA 378 3.01e+01 1my6A 199 3.02e+01 a.2.11.1,d.44.1.1 85232,85233 1on2A 142 3.08e+01 a.4.5.24,a.76.1.1 87103,87104 1r2zA 274 3.32e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1vpqA 273 3.33e+01 1f75A 249 3.35e+01 1f75A c.101.1.1 59662 1a41 234 3.35e+01 1a41 d.163.1.2 42174 1wmuA 141 3.35e+01 a.1.1.2 109416 1mlo 154 3.51e+01 1a6m a.1.1.2 15085 103m 154 3.51e+01 1a6m a.1.1.2 15124 1nw2A 105 3.51e+01 c.47.1.1 92215 1mym 154 3.53e+01 1a6m a.1.1.2 15054 1gkzA 388 3.54e+01 a.29.5.1,d.122.1.4 65268,65269 2mgb 154 3.56e+01 1a6m a.1.1.2 15102 1a59 378 3.62e+01 1aj8A a.103.1.1 18902 1hlvA 131 3.66e+01 a.4.1.7,a.4.1.7 65854,65855 1j34A 129 3.68e+01 d.169.1.1 84048 1nh1A 330 3.70e+01 e.45.1.1 91871 1mll 154 3.76e+01 1a6m a.1.1.2 15057 1mlg 154 3.77e+01 1a6m a.1.1.2 15104 1a6m 151 3.84e+01 1a6m a.1.1.2 15018 1oe9A 795 3.84e+01 b.34.3.1,c.37.1.9 92792,92793 1e94F 449 3.92e+01 1do0A c.37.1.20 32443 1or4A 178 3.93e+01 a.1.1.2 93447 1mod 154 3.95e+01 1a6m a.1.1.2 15107 1bzpA 153 3.98e+01 1a6m a.1.1.2 15020 2f94F 350 3.98e+01 2spl 154 4.06e+01 1a6m a.1.1.2 15047 1yyqA 374 4.18e+01 1wnfA 328 4.20e+01 1gpmA 525 4.21e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2end 138 4.21e+01 2end a.18.1.1 16400 1dc1A 323 4.24e+01 1dc1A c.52.1.11 33321 1yq7A 374 4.27e+01 1qddA 144 4.38e+01 1qddA d.169.1.1 42324 1rwtA 232 4.48e+01 f.43.1.1 97992 1ydhA 216 4.48e+01 1qc7A 101 4.51e+01 1qc7A a.118.14.1 18456 2be4A 272 4.59e+01 1rro 108 4.59e+01 1a75A a.39.1.4 17195 1rcwA 231 4.66e+01 a.132.1.4 97299 1l1zA 274 4.66e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1vz6A 393 4.68e+01 d.154.1.2 108949 2a14A 263 4.68e+01 1m1zA 513 4.68e+01 c.26.2.1,d.153.1.1 78457,78458 1tufA 434 4.72e+01 b.49.2.3,c.1.6.1 107335,107336 1f4lA 551 4.73e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1tia 279 4.75e+01 3tgl c.69.1.17 34737 1ey4A 149 4.75e+01 1snc b.40.1.1 24815 1pfvA 551 4.75e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1vkhA 273 4.77e+01 c.69.1.32 108662 1lghA 56 4.83e+01 1lghA f.3.1.1 43733 1nswA 105 4.89e+01 c.47.1.1 92097 1fxxA 482 4.91e+01 1fxxA c.55.3.5 33726 1jigA 146 4.93e+01 a.25.1.1 71685 1mngA 203 4.96e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1mr8A 93 5.01e+01 1b4cA a.39.1.2 17186 1q0pA 223 5.14e+01 c.62.1.1 95507 1u2kA 309 5.20e+01 1wwpA 119 5.22e+01 1xqwA 293 5.24e+01 1mroB 442 5.29e+01 1mroB a.89.1.1,d.58.31.2 18531,39449 1hbnB 442 5.31e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1g291 372 5.35e+01 1g291 1ay7B 89 5.42e+01 1ay7B c.9.1.1 30836 1ukmB 128 5.52e+01 d.169.1.1 99500 1t9kA 347 5.52e+01 c.124.1.5 106721 1v7pB 128 5.53e+01 d.169.1.1 108407 1ug7A 128 5.63e+01 a.24.24.1 107824 2g38B 198 5.64e+01 2a2cA 478 5.71e+01 1rpa 342 5.77e+01 1cviA c.60.1.2 33983 1qu1A 155 5.77e+01 1qu1A h.3.1.1 45670 1kiyA 374 5.84e+01 a.128.1.5 72555 1zq9A 285 6.01e+01 1w2yA 229 6.03e+01 a.204.1.1 109140 1aszB 490 6.07e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1v1rA 400 6.09e+01 c.36.1.11 108272 2a2dA 478 6.11e+01 1wm1A 317 6.11e+01 c.69.1.7 109405 1ne2A 200 6.15e+01 c.66.1.32 85586 1d2zB 153 6.17e+01 1d2zB a.77.1.2 18439 1q08A 99 6.23e+01 a.6.1.3 95497 1wtyA 119 6.28e+01 1zoyC 140 6.28e+01 1x9bA 53 6.31e+01 1vprA 374 6.34e+01 1v4xA 144 6.39e+01 a.1.1.2 108363 1v6tA 255 6.50e+01 1z5zA 271 6.51e+01 1khoA 370 6.60e+01 a.124.1.1,b.12.1.3 72489,72490 1mq4A 272 6.61e+01 d.144.1.7 91391 2fbmA 291 6.95e+01 1kshA 186 6.98e+01 c.37.1.8 72914 1wgwA 99 7.03e+01 1y4hA 188 7.15e+01 1vgwA 231 7.25e+01 c.68.1.13 100612 1z5bA 469 7.28e+01 2cblA 305 7.40e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1y74A 57 7.41e+01 1akhA 61 7.41e+01 1akhA a.4.1.1 15980 1q44A 326 7.46e+01 c.37.1.5 95779 1q3eA 207 7.48e+01 b.82.3.2 95669 1fiuA 286 7.57e+01 1fiuA c.52.1.10 33317 1w9cA 321 7.58e+01 1twiA 434 7.61e+01 b.49.2.3,c.1.6.1 107399,107400 1u8vA 490 7.62e+01 1xk4A 93 7.63e+01 1dwtA 153 7.68e+01 1a6m a.1.1.2 15190 1mkp 144 7.72e+01 1vhrA c.45.1.1 32654 1bh9B 89 7.80e+01 1bh9B a.22.1.3 16485 1fkmA 396 7.81e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 2fd5A 180 7.82e+01 1yvhA 329 7.84e+01 1gjnA 153 7.87e+01 a.1.1.2 70191 1u7kA 131 7.89e+01 1qwoA 442 7.89e+01 c.60.1.2 104620 1pxvA 183 7.98e+01 d.3.1.1 95301 1wovA 250 7.98e+01 1othA 321 8.02e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1wmiA 90 8.10e+01 2a33A 215 8.15e+01 1mla 309 8.19e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1bfd 528 8.22e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1k8kA 418 8.25e+01 c.55.1.1,c.55.1.1 68305,68306 1z6aA 500 8.29e+01 1or0A 160 8.33e+01 d.153.1.2 93445 1j6zA 376 8.35e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1wa8A 99 8.45e+01 1yc9A 442 8.50e+01 1nbuA 119 8.51e+01 d.96.1.3 91767 1fm2A 169 8.59e+01 1fm2A d.153.1.2 59877 1jq0A 84 8.63e+01 h.3.2.1 71786 1qh8B 519 8.63e+01 1qguB c.92.2.3 35634 1mtzA 293 8.65e+01 c.69.1.7 79467 1clc 639 8.67e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1s5lT 32 8.68e+01 2dh4A 340 8.76e+01 1jmsA 381 8.78e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1r8mE 203 8.83e+01 a.118.3.1 97242