make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0386' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0386.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0386/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173810388 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.16006 sec, elapsed time= 6.22885 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.23605 sec, elapsed time= 6.32859 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0386 numbered 1 through 299 Created new target T0386 from T0386.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0386.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0386.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0386.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 9.16661 sec, elapsed time= 9.85027 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.43813 # GDT_score(maxd=8,maxw=2.9)= -5.50179 # GDT_score(maxd=8,maxw=3.2)= -5.26819 # GDT_score(maxd=8,maxw=3.5)= -5.05161 # GDT_score(maxd=10,maxw=3.8)= -5.88791 # GDT_score(maxd=10,maxw=4)= -5.7273 # GDT_score(maxd=10,maxw=4.2)= -5.58198 # GDT_score(maxd=12,maxw=4.3)= -6.52161 # GDT_score(maxd=12,maxw=4.5)= -6.35068 # GDT_score(maxd=12,maxw=4.7)= -6.19429 # GDT_score(maxd=14,maxw=5.2)= -6.70784 # GDT_score(maxd=14,maxw=5.5)= -6.46965 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_104020741.pdb -s /var/tmp/to_scwrl_104020741.seq -o /var/tmp/from_scwrl_104020741.pdb > /var/tmp/scwrl_104020741.log Error: can't open any of /var/tmp/from_scwrl_104020741.pdb or /var/tmp/from_scwrl_104020741_b.pdb or /var/tmp/from_scwrl_104020741_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.02007 # GDT_score(maxd=8,maxw=2.9)= -5.59866 # GDT_score(maxd=8,maxw=3.2)= -5.35597 # GDT_score(maxd=8,maxw=3.5)= -5.15489 # GDT_score(maxd=10,maxw=3.8)= -5.90537 # GDT_score(maxd=10,maxw=4)= -5.7606 # GDT_score(maxd=10,maxw=4.2)= -5.62962 # GDT_score(maxd=12,maxw=4.3)= -6.41421 # GDT_score(maxd=12,maxw=4.5)= -6.26292 # GDT_score(maxd=12,maxw=4.7)= -6.12353 # GDT_score(maxd=14,maxw=5.2)= -6.56765 # GDT_score(maxd=14,maxw=5.5)= -6.31887 # command:# request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_463204703.pdb -s /var/tmp/to_scwrl_463204703.seq -o /var/tmp/from_scwrl_463204703.pdb > /var/tmp/scwrl_463204703.log Error: can't open any of /var/tmp/from_scwrl_463204703.pdb or /var/tmp/from_scwrl_463204703_b.pdb or /var/tmp/from_scwrl_463204703_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.77258 # GDT_score(maxd=8,maxw=2.9)= -5.7495 # GDT_score(maxd=8,maxw=3.2)= -5.49267 # GDT_score(maxd=8,maxw=3.5)= -5.25355 # GDT_score(maxd=10,maxw=3.8)= -6.09406 # GDT_score(maxd=10,maxw=4)= -5.92314 # GDT_score(maxd=10,maxw=4.2)= -5.76849 # GDT_score(maxd=12,maxw=4.3)= -6.71734 # GDT_score(maxd=12,maxw=4.5)= -6.53771 # GDT_score(maxd=12,maxw=4.7)= -6.3727 # GDT_score(maxd=14,maxw=5.2)= -6.8673 # GDT_score(maxd=14,maxw=5.5)= -6.62042 # command:# request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1115376508.pdb -s /var/tmp/to_scwrl_1115376508.seq -o /var/tmp/from_scwrl_1115376508.pdb > /var/tmp/scwrl_1115376508.log Error: can't open any of /var/tmp/from_scwrl_1115376508.pdb or /var/tmp/from_scwrl_1115376508_b.pdb or /var/tmp/from_scwrl_1115376508_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.27425 # GDT_score(maxd=8,maxw=2.9)= -6.84895 # GDT_score(maxd=8,maxw=3.2)= -6.5204 # GDT_score(maxd=8,maxw=3.5)= -6.22092 # GDT_score(maxd=10,maxw=3.8)= -7.05172 # GDT_score(maxd=10,maxw=4)= -6.84663 # GDT_score(maxd=10,maxw=4.2)= -6.64801 # GDT_score(maxd=12,maxw=4.3)= -7.51506 # GDT_score(maxd=12,maxw=4.5)= -7.29998 # GDT_score(maxd=12,maxw=4.7)= -7.10319 # GDT_score(maxd=14,maxw=5.2)= -7.43316 # GDT_score(maxd=14,maxw=5.5)= -7.15924 # command:# request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1827619172.pdb -s /var/tmp/to_scwrl_1827619172.seq -o /var/tmp/from_scwrl_1827619172.pdb > /var/tmp/scwrl_1827619172.log Error: can't open any of /var/tmp/from_scwrl_1827619172.pdb or /var/tmp/from_scwrl_1827619172_b.pdb or /var/tmp/from_scwrl_1827619172_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.76923 # GDT_score(maxd=8,maxw=2.9)= -5.29483 # GDT_score(maxd=8,maxw=3.2)= -5.08063 # GDT_score(maxd=8,maxw=3.5)= -4.90215 # GDT_score(maxd=10,maxw=3.8)= -5.54829 # GDT_score(maxd=10,maxw=4)= -5.40561 # GDT_score(maxd=10,maxw=4.2)= -5.27561 # GDT_score(maxd=12,maxw=4.3)= -6.1021 # GDT_score(maxd=12,maxw=4.5)= -5.94981 # GDT_score(maxd=12,maxw=4.7)= -5.81048 # GDT_score(maxd=14,maxw=5.2)= -6.30349 # GDT_score(maxd=14,maxw=5.5)= -6.09242 # command:# request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_181553332.pdb -s /var/tmp/to_scwrl_181553332.seq -o /var/tmp/from_scwrl_181553332.pdb > /var/tmp/scwrl_181553332.log Error: can't open any of /var/tmp/from_scwrl_181553332.pdb or /var/tmp/from_scwrl_181553332_b.pdb or /var/tmp/from_scwrl_181553332_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0386.try1-opt2.pdb looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.27425 # GDT_score(maxd=8,maxw=2.9)= -6.54462 # GDT_score(maxd=8,maxw=3.2)= -6.24461 # GDT_score(maxd=8,maxw=3.5)= -5.99603 # GDT_score(maxd=10,maxw=3.8)= -6.8593 # GDT_score(maxd=10,maxw=4)= -6.68356 # GDT_score(maxd=10,maxw=4.2)= -6.50685 # GDT_score(maxd=12,maxw=4.3)= -7.34749 # GDT_score(maxd=12,maxw=4.5)= -7.14962 # GDT_score(maxd=12,maxw=4.7)= -6.95923 # GDT_score(maxd=14,maxw=5.2)= -7.37515 # GDT_score(maxd=14,maxw=5.5)= -7.11881 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0386.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.528428 # GDT_score = -5.93645 # GDT_score(maxd=8,maxw=2.9)= -5.62208 # GDT_score(maxd=8,maxw=3.2)= -5.37529 # GDT_score(maxd=8,maxw=3.5)= -5.14101 # GDT_score(maxd=10,maxw=3.8)= -5.6763 # GDT_score(maxd=10,maxw=4)= -5.50954 # GDT_score(maxd=10,maxw=4.2)= -5.35867 # GDT_score(maxd=12,maxw=4.3)= -6.05801 # GDT_score(maxd=12,maxw=4.5)= -5.89282 # GDT_score(maxd=12,maxw=4.7)= -5.74168 # GDT_score(maxd=14,maxw=5.2)= -6.11126 # GDT_score(maxd=14,maxw=5.5)= -5.90562 # command:# ReadConformPDB reading from PDB file T0386.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.561873 # GDT_score = -6.10368 # GDT_score(maxd=8,maxw=2.9)= -5.8808 # GDT_score(maxd=8,maxw=3.2)= -5.61166 # GDT_score(maxd=8,maxw=3.5)= -5.36315 # GDT_score(maxd=10,maxw=3.8)= -5.92654 # GDT_score(maxd=10,maxw=4)= -5.76399 # GDT_score(maxd=10,maxw=4.2)= -5.61692 # GDT_score(maxd=12,maxw=4.3)= -6.32009 # GDT_score(maxd=12,maxw=4.5)= -6.15812 # GDT_score(maxd=12,maxw=4.7)= -6.00823 # GDT_score(maxd=14,maxw=5.2)= -6.41197 # GDT_score(maxd=14,maxw=5.5)= -6.18992 # command:# ReadConformPDB reading from PDB file T0386.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0386.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0386.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.chimera.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.chimera2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.chimera3.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.chimera4.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.chimera5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.chimera6.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.chimera7.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try1-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try12-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try13-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try15-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try18-opt2.repack-nonPC.pdb.gz looking for model 1 Error: Reading chain from PDB file T0386.try18-opt2.repack-nonPC.pdb.gz failed. # ReadConformPDB reading from PDB file T0386.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try19-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try2-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try20-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try21-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0386.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-4-1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1211871523.pdb -s /var/tmp/to_scwrl_1211871523.seq -o /var/tmp/from_scwrl_1211871523.pdb > /var/tmp/scwrl_1211871523.log Error: can't open any of /var/tmp/from_scwrl_1211871523.pdb or /var/tmp/from_scwrl_1211871523_b.pdb or /var/tmp/from_scwrl_1211871523_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1552683486.pdb -s /var/tmp/to_scwrl_1552683486.seq -o /var/tmp/from_scwrl_1552683486.pdb > /var/tmp/scwrl_1552683486.log Error: can't open any of /var/tmp/from_scwrl_1552683486.pdb or /var/tmp/from_scwrl_1552683486_b.pdb or /var/tmp/from_scwrl_1552683486_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1238686043.pdb -s /var/tmp/to_scwrl_1238686043.seq -o /var/tmp/from_scwrl_1238686043.pdb > /var/tmp/scwrl_1238686043.log Error: can't open any of /var/tmp/from_scwrl_1238686043.pdb or /var/tmp/from_scwrl_1238686043_b.pdb or /var/tmp/from_scwrl_1238686043_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1084316272.pdb -s /var/tmp/to_scwrl_1084316272.seq -o /var/tmp/from_scwrl_1084316272.pdb > /var/tmp/scwrl_1084316272.log Error: can't open any of /var/tmp/from_scwrl_1084316272.pdb or /var/tmp/from_scwrl_1084316272_b.pdb or /var/tmp/from_scwrl_1084316272_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1073786580.pdb -s /var/tmp/to_scwrl_1073786580.seq -o /var/tmp/from_scwrl_1073786580.pdb > /var/tmp/scwrl_1073786580.log Error: can't open any of /var/tmp/from_scwrl_1073786580.pdb or /var/tmp/from_scwrl_1073786580_b.pdb or /var/tmp/from_scwrl_1073786580_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_791220052.pdb -s /var/tmp/to_scwrl_791220052.seq -o /var/tmp/from_scwrl_791220052.pdb > /var/tmp/scwrl_791220052.log Error: can't open any of /var/tmp/from_scwrl_791220052.pdb or /var/tmp/from_scwrl_791220052_b.pdb or /var/tmp/from_scwrl_791220052_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_429681729.pdb -s /var/tmp/to_scwrl_429681729.seq -o /var/tmp/from_scwrl_429681729.pdb > /var/tmp/scwrl_429681729.log Error: can't open any of /var/tmp/from_scwrl_429681729.pdb or /var/tmp/from_scwrl_429681729_b.pdb or /var/tmp/from_scwrl_429681729_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1546519519.pdb -s /var/tmp/to_scwrl_1546519519.seq -o /var/tmp/from_scwrl_1546519519.pdb > /var/tmp/scwrl_1546519519.log Error: can't open any of /var/tmp/from_scwrl_1546519519.pdb or /var/tmp/from_scwrl_1546519519_b.pdb or /var/tmp/from_scwrl_1546519519_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1306527016.pdb -s /var/tmp/to_scwrl_1306527016.seq -o /var/tmp/from_scwrl_1306527016.pdb > /var/tmp/scwrl_1306527016.log Error: can't open any of /var/tmp/from_scwrl_1306527016.pdb or /var/tmp/from_scwrl_1306527016_b.pdb or /var/tmp/from_scwrl_1306527016_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1402008877.pdb -s /var/tmp/to_scwrl_1402008877.seq -o /var/tmp/from_scwrl_1402008877.pdb > /var/tmp/scwrl_1402008877.log Error: can't open any of /var/tmp/from_scwrl_1402008877.pdb or /var/tmp/from_scwrl_1402008877_b.pdb or /var/tmp/from_scwrl_1402008877_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1570295805.pdb -s /var/tmp/to_scwrl_1570295805.seq -o /var/tmp/from_scwrl_1570295805.pdb > /var/tmp/scwrl_1570295805.log Error: can't open any of /var/tmp/from_scwrl_1570295805.pdb or /var/tmp/from_scwrl_1570295805_b.pdb or /var/tmp/from_scwrl_1570295805_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_30145760.pdb -s /var/tmp/to_scwrl_30145760.seq -o /var/tmp/from_scwrl_30145760.pdb > /var/tmp/scwrl_30145760.log Error: can't open any of /var/tmp/from_scwrl_30145760.pdb or /var/tmp/from_scwrl_30145760_b.pdb or /var/tmp/from_scwrl_30145760_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_344366885.pdb -s /var/tmp/to_scwrl_344366885.seq -o /var/tmp/from_scwrl_344366885.pdb > /var/tmp/scwrl_344366885.log Error: can't open any of /var/tmp/from_scwrl_344366885.pdb or /var/tmp/from_scwrl_344366885_b.pdb or /var/tmp/from_scwrl_344366885_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1611762901.pdb -s /var/tmp/to_scwrl_1611762901.seq -o /var/tmp/from_scwrl_1611762901.pdb > /var/tmp/scwrl_1611762901.log Error: can't open any of /var/tmp/from_scwrl_1611762901.pdb or /var/tmp/from_scwrl_1611762901_b.pdb or /var/tmp/from_scwrl_1611762901_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1275507270.pdb -s /var/tmp/to_scwrl_1275507270.seq -o /var/tmp/from_scwrl_1275507270.pdb > /var/tmp/scwrl_1275507270.log Error: can't open any of /var/tmp/from_scwrl_1275507270.pdb or /var/tmp/from_scwrl_1275507270_b.pdb or /var/tmp/from_scwrl_1275507270_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1022802807.pdb -s /var/tmp/to_scwrl_1022802807.seq -o /var/tmp/from_scwrl_1022802807.pdb > /var/tmp/scwrl_1022802807.log Error: can't open any of /var/tmp/from_scwrl_1022802807.pdb or /var/tmp/from_scwrl_1022802807_b.pdb or /var/tmp/from_scwrl_1022802807_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_46647815.pdb -s /var/tmp/to_scwrl_46647815.seq -o /var/tmp/from_scwrl_46647815.pdb > /var/tmp/scwrl_46647815.log Error: can't open any of /var/tmp/from_scwrl_46647815.pdb or /var/tmp/from_scwrl_46647815_b.pdb or /var/tmp/from_scwrl_46647815_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1103239234.pdb -s /var/tmp/to_scwrl_1103239234.seq -o /var/tmp/from_scwrl_1103239234.pdb > /var/tmp/scwrl_1103239234.log Error: can't open any of /var/tmp/from_scwrl_1103239234.pdb or /var/tmp/from_scwrl_1103239234_b.pdb or /var/tmp/from_scwrl_1103239234_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_527471468.pdb -s /var/tmp/to_scwrl_527471468.seq -o /var/tmp/from_scwrl_527471468.pdb > /var/tmp/scwrl_527471468.log Error: can't open any of /var/tmp/from_scwrl_527471468.pdb or /var/tmp/from_scwrl_527471468_b.pdb or /var/tmp/from_scwrl_527471468_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_85810502.pdb -s /var/tmp/to_scwrl_85810502.seq -o /var/tmp/from_scwrl_85810502.pdb > /var/tmp/scwrl_85810502.log Error: can't open any of /var/tmp/from_scwrl_85810502.pdb or /var/tmp/from_scwrl_85810502_b.pdb or /var/tmp/from_scwrl_85810502_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1972500668.pdb -s /var/tmp/to_scwrl_1972500668.seq -o /var/tmp/from_scwrl_1972500668.pdb > /var/tmp/scwrl_1972500668.log Error: can't open any of /var/tmp/from_scwrl_1972500668.pdb or /var/tmp/from_scwrl_1972500668_b.pdb or /var/tmp/from_scwrl_1972500668_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_958578530.pdb -s /var/tmp/to_scwrl_958578530.seq -o /var/tmp/from_scwrl_958578530.pdb > /var/tmp/scwrl_958578530.log Error: can't open any of /var/tmp/from_scwrl_958578530.pdb or /var/tmp/from_scwrl_958578530_b.pdb or /var/tmp/from_scwrl_958578530_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_191384362.pdb -s /var/tmp/to_scwrl_191384362.seq -o /var/tmp/from_scwrl_191384362.pdb > /var/tmp/scwrl_191384362.log Error: can't open any of /var/tmp/from_scwrl_191384362.pdb or /var/tmp/from_scwrl_191384362_b.pdb or /var/tmp/from_scwrl_191384362_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2094410158.pdb -s /var/tmp/to_scwrl_2094410158.seq -o /var/tmp/from_scwrl_2094410158.pdb > /var/tmp/scwrl_2094410158.log Error: can't open any of /var/tmp/from_scwrl_2094410158.pdb or /var/tmp/from_scwrl_2094410158_b.pdb or /var/tmp/from_scwrl_2094410158_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1908294839.pdb -s /var/tmp/to_scwrl_1908294839.seq -o /var/tmp/from_scwrl_1908294839.pdb > /var/tmp/scwrl_1908294839.log Error: can't open any of /var/tmp/from_scwrl_1908294839.pdb or /var/tmp/from_scwrl_1908294839_b.pdb or /var/tmp/from_scwrl_1908294839_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1935913466.pdb -s /var/tmp/to_scwrl_1935913466.seq -o /var/tmp/from_scwrl_1935913466.pdb > /var/tmp/scwrl_1935913466.log Error: can't open any of /var/tmp/from_scwrl_1935913466.pdb or /var/tmp/from_scwrl_1935913466_b.pdb or /var/tmp/from_scwrl_1935913466_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_50947252.pdb -s /var/tmp/to_scwrl_50947252.seq -o /var/tmp/from_scwrl_50947252.pdb > /var/tmp/scwrl_50947252.log Error: can't open any of /var/tmp/from_scwrl_50947252.pdb or /var/tmp/from_scwrl_50947252_b.pdb or /var/tmp/from_scwrl_50947252_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_224015895.pdb -s /var/tmp/to_scwrl_224015895.seq -o /var/tmp/from_scwrl_224015895.pdb > /var/tmp/scwrl_224015895.log Error: can't open any of /var/tmp/from_scwrl_224015895.pdb or /var/tmp/from_scwrl_224015895_b.pdb or /var/tmp/from_scwrl_224015895_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_903806328.pdb -s /var/tmp/to_scwrl_903806328.seq -o /var/tmp/from_scwrl_903806328.pdb > /var/tmp/scwrl_903806328.log Error: can't open any of /var/tmp/from_scwrl_903806328.pdb or /var/tmp/from_scwrl_903806328_b.pdb or /var/tmp/from_scwrl_903806328_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1878566424.pdb -s /var/tmp/to_scwrl_1878566424.seq -o /var/tmp/from_scwrl_1878566424.pdb > /var/tmp/scwrl_1878566424.log Error: can't open any of /var/tmp/from_scwrl_1878566424.pdb or /var/tmp/from_scwrl_1878566424_b.pdb or /var/tmp/from_scwrl_1878566424_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_405569227.pdb -s /var/tmp/to_scwrl_405569227.seq -o /var/tmp/from_scwrl_405569227.pdb > /var/tmp/scwrl_405569227.log Error: can't open any of /var/tmp/from_scwrl_405569227.pdb or /var/tmp/from_scwrl_405569227_b.pdb or /var/tmp/from_scwrl_405569227_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2115677851.pdb -s /var/tmp/to_scwrl_2115677851.seq -o /var/tmp/from_scwrl_2115677851.pdb > /var/tmp/scwrl_2115677851.log Error: can't open any of /var/tmp/from_scwrl_2115677851.pdb or /var/tmp/from_scwrl_2115677851_b.pdb or /var/tmp/from_scwrl_2115677851_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1283766264.pdb -s /var/tmp/to_scwrl_1283766264.seq -o /var/tmp/from_scwrl_1283766264.pdb > /var/tmp/scwrl_1283766264.log Error: can't open any of /var/tmp/from_scwrl_1283766264.pdb or /var/tmp/from_scwrl_1283766264_b.pdb or /var/tmp/from_scwrl_1283766264_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1644255270.pdb -s /var/tmp/to_scwrl_1644255270.seq -o /var/tmp/from_scwrl_1644255270.pdb > /var/tmp/scwrl_1644255270.log Error: can't open any of /var/tmp/from_scwrl_1644255270.pdb or /var/tmp/from_scwrl_1644255270_b.pdb or /var/tmp/from_scwrl_1644255270_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1052510477.pdb -s /var/tmp/to_scwrl_1052510477.seq -o /var/tmp/from_scwrl_1052510477.pdb > /var/tmp/scwrl_1052510477.log Error: can't open any of /var/tmp/from_scwrl_1052510477.pdb or /var/tmp/from_scwrl_1052510477_b.pdb or /var/tmp/from_scwrl_1052510477_a.pdb Error: no new SCWRL conformation added # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_210069198.pdb -s /var/tmp/to_scwrl_210069198.seq -o /var/tmp/from_scwrl_210069198.pdb > /var/tmp/scwrl_210069198.log Error: can't open any of /var/tmp/from_scwrl_210069198.pdb or /var/tmp/from_scwrl_210069198_b.pdb or /var/tmp/from_scwrl_210069198_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_287991675.pdb -s /var/tmp/to_scwrl_287991675.seq -o /var/tmp/from_scwrl_287991675.pdb > /var/tmp/scwrl_287991675.log Error: can't open any of /var/tmp/from_scwrl_287991675.pdb or /var/tmp/from_scwrl_287991675_b.pdb or /var/tmp/from_scwrl_287991675_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1482192205.pdb -s /var/tmp/to_scwrl_1482192205.seq -o /var/tmp/from_scwrl_1482192205.pdb > /var/tmp/scwrl_1482192205.log Error: can't open any of /var/tmp/from_scwrl_1482192205.pdb or /var/tmp/from_scwrl_1482192205_b.pdb or /var/tmp/from_scwrl_1482192205_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1756588718.pdb -s /var/tmp/to_scwrl_1756588718.seq -o /var/tmp/from_scwrl_1756588718.pdb > /var/tmp/scwrl_1756588718.log Error: can't open any of /var/tmp/from_scwrl_1756588718.pdb or /var/tmp/from_scwrl_1756588718_b.pdb or /var/tmp/from_scwrl_1756588718_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1594518692.pdb -s /var/tmp/to_scwrl_1594518692.seq -o /var/tmp/from_scwrl_1594518692.pdb > /var/tmp/scwrl_1594518692.log Error: can't open any of /var/tmp/from_scwrl_1594518692.pdb or /var/tmp/from_scwrl_1594518692_b.pdb or /var/tmp/from_scwrl_1594518692_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_736717437.pdb -s /var/tmp/to_scwrl_736717437.seq -o /var/tmp/from_scwrl_736717437.pdb > /var/tmp/scwrl_736717437.log Error: can't open any of /var/tmp/from_scwrl_736717437.pdb or /var/tmp/from_scwrl_736717437_b.pdb or /var/tmp/from_scwrl_736717437_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1179400876.pdb -s /var/tmp/to_scwrl_1179400876.seq -o /var/tmp/from_scwrl_1179400876.pdb > /var/tmp/scwrl_1179400876.log Error: can't open any of /var/tmp/from_scwrl_1179400876.pdb or /var/tmp/from_scwrl_1179400876_b.pdb or /var/tmp/from_scwrl_1179400876_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1624664452.pdb -s /var/tmp/to_scwrl_1624664452.seq -o /var/tmp/from_scwrl_1624664452.pdb > /var/tmp/scwrl_1624664452.log Error: can't open any of /var/tmp/from_scwrl_1624664452.pdb or /var/tmp/from_scwrl_1624664452_b.pdb or /var/tmp/from_scwrl_1624664452_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1081084321.pdb -s /var/tmp/to_scwrl_1081084321.seq -o /var/tmp/from_scwrl_1081084321.pdb > /var/tmp/scwrl_1081084321.log Error: can't open any of /var/tmp/from_scwrl_1081084321.pdb or /var/tmp/from_scwrl_1081084321_b.pdb or /var/tmp/from_scwrl_1081084321_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_643680131.pdb -s /var/tmp/to_scwrl_643680131.seq -o /var/tmp/from_scwrl_643680131.pdb > /var/tmp/scwrl_643680131.log Error: can't open any of /var/tmp/from_scwrl_643680131.pdb or /var/tmp/from_scwrl_643680131_b.pdb or /var/tmp/from_scwrl_643680131_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_752688076.pdb -s /var/tmp/to_scwrl_752688076.seq -o /var/tmp/from_scwrl_752688076.pdb > /var/tmp/scwrl_752688076.log Error: can't open any of /var/tmp/from_scwrl_752688076.pdb or /var/tmp/from_scwrl_752688076_b.pdb or /var/tmp/from_scwrl_752688076_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2103887129.pdb -s /var/tmp/to_scwrl_2103887129.seq -o /var/tmp/from_scwrl_2103887129.pdb > /var/tmp/scwrl_2103887129.log Error: can't open any of /var/tmp/from_scwrl_2103887129.pdb or /var/tmp/from_scwrl_2103887129_b.pdb or /var/tmp/from_scwrl_2103887129_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_690327946.pdb -s /var/tmp/to_scwrl_690327946.seq -o /var/tmp/from_scwrl_690327946.pdb > /var/tmp/scwrl_690327946.log Error: can't open any of /var/tmp/from_scwrl_690327946.pdb or /var/tmp/from_scwrl_690327946_b.pdb or /var/tmp/from_scwrl_690327946_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1855927310.pdb -s /var/tmp/to_scwrl_1855927310.seq -o /var/tmp/from_scwrl_1855927310.pdb > /var/tmp/scwrl_1855927310.log Error: can't open any of /var/tmp/from_scwrl_1855927310.pdb or /var/tmp/from_scwrl_1855927310_b.pdb or /var/tmp/from_scwrl_1855927310_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_483874950.pdb -s /var/tmp/to_scwrl_483874950.seq -o /var/tmp/from_scwrl_483874950.pdb > /var/tmp/scwrl_483874950.log Error: can't open any of /var/tmp/from_scwrl_483874950.pdb or /var/tmp/from_scwrl_483874950_b.pdb or /var/tmp/from_scwrl_483874950_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_776138448.pdb -s /var/tmp/to_scwrl_776138448.seq -o /var/tmp/from_scwrl_776138448.pdb > /var/tmp/scwrl_776138448.log Error: can't open any of /var/tmp/from_scwrl_776138448.pdb or /var/tmp/from_scwrl_776138448_b.pdb or /var/tmp/from_scwrl_776138448_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1680944332.pdb -s /var/tmp/to_scwrl_1680944332.seq -o /var/tmp/from_scwrl_1680944332.pdb > /var/tmp/scwrl_1680944332.log Error: can't open any of /var/tmp/from_scwrl_1680944332.pdb or /var/tmp/from_scwrl_1680944332_b.pdb or /var/tmp/from_scwrl_1680944332_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1442453479.pdb -s /var/tmp/to_scwrl_1442453479.seq -o /var/tmp/from_scwrl_1442453479.pdb > /var/tmp/scwrl_1442453479.log Error: can't open any of /var/tmp/from_scwrl_1442453479.pdb or /var/tmp/from_scwrl_1442453479_b.pdb or /var/tmp/from_scwrl_1442453479_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_967522811.pdb -s /var/tmp/to_scwrl_967522811.seq -o /var/tmp/from_scwrl_967522811.pdb > /var/tmp/scwrl_967522811.log Error: can't open any of /var/tmp/from_scwrl_967522811.pdb or /var/tmp/from_scwrl_967522811_b.pdb or /var/tmp/from_scwrl_967522811_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1627870843.pdb -s /var/tmp/to_scwrl_1627870843.seq -o /var/tmp/from_scwrl_1627870843.pdb > /var/tmp/scwrl_1627870843.log Error: can't open any of /var/tmp/from_scwrl_1627870843.pdb or /var/tmp/from_scwrl_1627870843_b.pdb or /var/tmp/from_scwrl_1627870843_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1203264671.pdb -s /var/tmp/to_scwrl_1203264671.seq -o /var/tmp/from_scwrl_1203264671.pdb > /var/tmp/scwrl_1203264671.log Error: can't open any of /var/tmp/from_scwrl_1203264671.pdb or /var/tmp/from_scwrl_1203264671_b.pdb or /var/tmp/from_scwrl_1203264671_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_755952630.pdb -s /var/tmp/to_scwrl_755952630.seq -o /var/tmp/from_scwrl_755952630.pdb > /var/tmp/scwrl_755952630.log Error: can't open any of /var/tmp/from_scwrl_755952630.pdb or /var/tmp/from_scwrl_755952630_b.pdb or /var/tmp/from_scwrl_755952630_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1678818095.pdb -s /var/tmp/to_scwrl_1678818095.seq -o /var/tmp/from_scwrl_1678818095.pdb > /var/tmp/scwrl_1678818095.log Error: can't open any of /var/tmp/from_scwrl_1678818095.pdb or /var/tmp/from_scwrl_1678818095_b.pdb or /var/tmp/from_scwrl_1678818095_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1427280567.pdb -s /var/tmp/to_scwrl_1427280567.seq -o /var/tmp/from_scwrl_1427280567.pdb > /var/tmp/scwrl_1427280567.log Error: can't open any of /var/tmp/from_scwrl_1427280567.pdb or /var/tmp/from_scwrl_1427280567_b.pdb or /var/tmp/from_scwrl_1427280567_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1659758957.pdb -s /var/tmp/to_scwrl_1659758957.seq -o /var/tmp/from_scwrl_1659758957.pdb > /var/tmp/scwrl_1659758957.log Error: can't open any of /var/tmp/from_scwrl_1659758957.pdb or /var/tmp/from_scwrl_1659758957_b.pdb or /var/tmp/from_scwrl_1659758957_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1409900872.pdb -s /var/tmp/to_scwrl_1409900872.seq -o /var/tmp/from_scwrl_1409900872.pdb > /var/tmp/scwrl_1409900872.log Error: can't open any of /var/tmp/from_scwrl_1409900872.pdb or /var/tmp/from_scwrl_1409900872_b.pdb or /var/tmp/from_scwrl_1409900872_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1832849794.pdb -s /var/tmp/to_scwrl_1832849794.seq -o /var/tmp/from_scwrl_1832849794.pdb > /var/tmp/scwrl_1832849794.log Error: can't open any of /var/tmp/from_scwrl_1832849794.pdb or /var/tmp/from_scwrl_1832849794_b.pdb or /var/tmp/from_scwrl_1832849794_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1627953161.pdb -s /var/tmp/to_scwrl_1627953161.seq -o /var/tmp/from_scwrl_1627953161.pdb > /var/tmp/scwrl_1627953161.log Error: can't open any of /var/tmp/from_scwrl_1627953161.pdb or /var/tmp/from_scwrl_1627953161_b.pdb or /var/tmp/from_scwrl_1627953161_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_546183490.pdb -s /var/tmp/to_scwrl_546183490.seq -o /var/tmp/from_scwrl_546183490.pdb > /var/tmp/scwrl_546183490.log Error: can't open any of /var/tmp/from_scwrl_546183490.pdb or /var/tmp/from_scwrl_546183490_b.pdb or /var/tmp/from_scwrl_546183490_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1329621418.pdb -s /var/tmp/to_scwrl_1329621418.seq -o /var/tmp/from_scwrl_1329621418.pdb > /var/tmp/scwrl_1329621418.log Error: can't open any of /var/tmp/from_scwrl_1329621418.pdb or /var/tmp/from_scwrl_1329621418_b.pdb or /var/tmp/from_scwrl_1329621418_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_532979991.pdb -s /var/tmp/to_scwrl_532979991.seq -o /var/tmp/from_scwrl_532979991.pdb > /var/tmp/scwrl_532979991.log Error: can't open any of /var/tmp/from_scwrl_532979991.pdb or /var/tmp/from_scwrl_532979991_b.pdb or /var/tmp/from_scwrl_532979991_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_756252689.pdb -s /var/tmp/to_scwrl_756252689.seq -o /var/tmp/from_scwrl_756252689.pdb > /var/tmp/scwrl_756252689.log Error: can't open any of /var/tmp/from_scwrl_756252689.pdb or /var/tmp/from_scwrl_756252689_b.pdb or /var/tmp/from_scwrl_756252689_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1617613093.pdb -s /var/tmp/to_scwrl_1617613093.seq -o /var/tmp/from_scwrl_1617613093.pdb > /var/tmp/scwrl_1617613093.log Error: can't open any of /var/tmp/from_scwrl_1617613093.pdb or /var/tmp/from_scwrl_1617613093_b.pdb or /var/tmp/from_scwrl_1617613093_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2015172196.pdb -s /var/tmp/to_scwrl_2015172196.seq -o /var/tmp/from_scwrl_2015172196.pdb > /var/tmp/scwrl_2015172196.log Error: can't open any of /var/tmp/from_scwrl_2015172196.pdb or /var/tmp/from_scwrl_2015172196_b.pdb or /var/tmp/from_scwrl_2015172196_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_365357760.pdb -s /var/tmp/to_scwrl_365357760.seq -o /var/tmp/from_scwrl_365357760.pdb > /var/tmp/scwrl_365357760.log Error: can't open any of /var/tmp/from_scwrl_365357760.pdb or /var/tmp/from_scwrl_365357760_b.pdb or /var/tmp/from_scwrl_365357760_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1064648139.pdb -s /var/tmp/to_scwrl_1064648139.seq -o /var/tmp/from_scwrl_1064648139.pdb > /var/tmp/scwrl_1064648139.log Error: can't open any of /var/tmp/from_scwrl_1064648139.pdb or /var/tmp/from_scwrl_1064648139_b.pdb or /var/tmp/from_scwrl_1064648139_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_604405986.pdb -s /var/tmp/to_scwrl_604405986.seq -o /var/tmp/from_scwrl_604405986.pdb > /var/tmp/scwrl_604405986.log Error: can't open any of /var/tmp/from_scwrl_604405986.pdb or /var/tmp/from_scwrl_604405986_b.pdb or /var/tmp/from_scwrl_604405986_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1544758636.pdb -s /var/tmp/to_scwrl_1544758636.seq -o /var/tmp/from_scwrl_1544758636.pdb > /var/tmp/scwrl_1544758636.log Error: can't open any of /var/tmp/from_scwrl_1544758636.pdb or /var/tmp/from_scwrl_1544758636_b.pdb or /var/tmp/from_scwrl_1544758636_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_541828945.pdb -s /var/tmp/to_scwrl_541828945.seq -o /var/tmp/from_scwrl_541828945.pdb > /var/tmp/scwrl_541828945.log Error: can't open any of /var/tmp/from_scwrl_541828945.pdb or /var/tmp/from_scwrl_541828945_b.pdb or /var/tmp/from_scwrl_541828945_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1685490308.pdb -s /var/tmp/to_scwrl_1685490308.seq -o /var/tmp/from_scwrl_1685490308.pdb > /var/tmp/scwrl_1685490308.log Error: can't open any of /var/tmp/from_scwrl_1685490308.pdb or /var/tmp/from_scwrl_1685490308_b.pdb or /var/tmp/from_scwrl_1685490308_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_40955121.pdb -s /var/tmp/to_scwrl_40955121.seq -o /var/tmp/from_scwrl_40955121.pdb > /var/tmp/scwrl_40955121.log Error: can't open any of /var/tmp/from_scwrl_40955121.pdb or /var/tmp/from_scwrl_40955121_b.pdb or /var/tmp/from_scwrl_40955121_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1294517020.pdb -s /var/tmp/to_scwrl_1294517020.seq -o /var/tmp/from_scwrl_1294517020.pdb > /var/tmp/scwrl_1294517020.log Error: can't open any of /var/tmp/from_scwrl_1294517020.pdb or /var/tmp/from_scwrl_1294517020_b.pdb or /var/tmp/from_scwrl_1294517020_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1641893790.pdb -s /var/tmp/to_scwrl_1641893790.seq -o /var/tmp/from_scwrl_1641893790.pdb > /var/tmp/scwrl_1641893790.log Error: can't open any of /var/tmp/from_scwrl_1641893790.pdb or /var/tmp/from_scwrl_1641893790_b.pdb or /var/tmp/from_scwrl_1641893790_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_731283067.pdb -s /var/tmp/to_scwrl_731283067.seq -o /var/tmp/from_scwrl_731283067.pdb > /var/tmp/scwrl_731283067.log Error: can't open any of /var/tmp/from_scwrl_731283067.pdb or /var/tmp/from_scwrl_731283067_b.pdb or /var/tmp/from_scwrl_731283067_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1002960685.pdb -s /var/tmp/to_scwrl_1002960685.seq -o /var/tmp/from_scwrl_1002960685.pdb > /var/tmp/scwrl_1002960685.log Error: can't open any of /var/tmp/from_scwrl_1002960685.pdb or /var/tmp/from_scwrl_1002960685_b.pdb or /var/tmp/from_scwrl_1002960685_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2125768740.pdb -s /var/tmp/to_scwrl_2125768740.seq -o /var/tmp/from_scwrl_2125768740.pdb > /var/tmp/scwrl_2125768740.log Error: can't open any of /var/tmp/from_scwrl_2125768740.pdb or /var/tmp/from_scwrl_2125768740_b.pdb or /var/tmp/from_scwrl_2125768740_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1507421515.pdb -s /var/tmp/to_scwrl_1507421515.seq -o /var/tmp/from_scwrl_1507421515.pdb > /var/tmp/scwrl_1507421515.log Error: can't open any of /var/tmp/from_scwrl_1507421515.pdb or /var/tmp/from_scwrl_1507421515_b.pdb or /var/tmp/from_scwrl_1507421515_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_536421370.pdb -s /var/tmp/to_scwrl_536421370.seq -o /var/tmp/from_scwrl_536421370.pdb > /var/tmp/scwrl_536421370.log Error: can't open any of /var/tmp/from_scwrl_536421370.pdb or /var/tmp/from_scwrl_536421370_b.pdb or /var/tmp/from_scwrl_536421370_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1420738572.pdb -s /var/tmp/to_scwrl_1420738572.seq -o /var/tmp/from_scwrl_1420738572.pdb > /var/tmp/scwrl_1420738572.log Error: can't open any of /var/tmp/from_scwrl_1420738572.pdb or /var/tmp/from_scwrl_1420738572_b.pdb or /var/tmp/from_scwrl_1420738572_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_327460679.pdb -s /var/tmp/to_scwrl_327460679.seq -o /var/tmp/from_scwrl_327460679.pdb > /var/tmp/scwrl_327460679.log Error: can't open any of /var/tmp/from_scwrl_327460679.pdb or /var/tmp/from_scwrl_327460679_b.pdb or /var/tmp/from_scwrl_327460679_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_16808566.pdb -s /var/tmp/to_scwrl_16808566.seq -o /var/tmp/from_scwrl_16808566.pdb > /var/tmp/scwrl_16808566.log Error: can't open any of /var/tmp/from_scwrl_16808566.pdb or /var/tmp/from_scwrl_16808566_b.pdb or /var/tmp/from_scwrl_16808566_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_476519597.pdb -s /var/tmp/to_scwrl_476519597.seq -o /var/tmp/from_scwrl_476519597.pdb > /var/tmp/scwrl_476519597.log Error: can't open any of /var/tmp/from_scwrl_476519597.pdb or /var/tmp/from_scwrl_476519597_b.pdb or /var/tmp/from_scwrl_476519597_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1083413308.pdb -s /var/tmp/to_scwrl_1083413308.seq -o /var/tmp/from_scwrl_1083413308.pdb > /var/tmp/scwrl_1083413308.log Error: can't open any of /var/tmp/from_scwrl_1083413308.pdb or /var/tmp/from_scwrl_1083413308_b.pdb or /var/tmp/from_scwrl_1083413308_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1695626661.pdb -s /var/tmp/to_scwrl_1695626661.seq -o /var/tmp/from_scwrl_1695626661.pdb > /var/tmp/scwrl_1695626661.log Error: can't open any of /var/tmp/from_scwrl_1695626661.pdb or /var/tmp/from_scwrl_1695626661_b.pdb or /var/tmp/from_scwrl_1695626661_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1903800164.pdb -s /var/tmp/to_scwrl_1903800164.seq -o /var/tmp/from_scwrl_1903800164.pdb > /var/tmp/scwrl_1903800164.log Error: can't open any of /var/tmp/from_scwrl_1903800164.pdb or /var/tmp/from_scwrl_1903800164_b.pdb or /var/tmp/from_scwrl_1903800164_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_595688619.pdb -s /var/tmp/to_scwrl_595688619.seq -o /var/tmp/from_scwrl_595688619.pdb > /var/tmp/scwrl_595688619.log Error: can't open any of /var/tmp/from_scwrl_595688619.pdb or /var/tmp/from_scwrl_595688619_b.pdb or /var/tmp/from_scwrl_595688619_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_958043887.pdb -s /var/tmp/to_scwrl_958043887.seq -o /var/tmp/from_scwrl_958043887.pdb > /var/tmp/scwrl_958043887.log Error: can't open any of /var/tmp/from_scwrl_958043887.pdb or /var/tmp/from_scwrl_958043887_b.pdb or /var/tmp/from_scwrl_958043887_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1589166312.pdb -s /var/tmp/to_scwrl_1589166312.seq -o /var/tmp/from_scwrl_1589166312.pdb > /var/tmp/scwrl_1589166312.log Error: can't open any of /var/tmp/from_scwrl_1589166312.pdb or /var/tmp/from_scwrl_1589166312_b.pdb or /var/tmp/from_scwrl_1589166312_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_76158133.pdb -s /var/tmp/to_scwrl_76158133.seq -o /var/tmp/from_scwrl_76158133.pdb > /var/tmp/scwrl_76158133.log Error: can't open any of /var/tmp/from_scwrl_76158133.pdb or /var/tmp/from_scwrl_76158133_b.pdb or /var/tmp/from_scwrl_76158133_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1504227377.pdb -s /var/tmp/to_scwrl_1504227377.seq -o /var/tmp/from_scwrl_1504227377.pdb > /var/tmp/scwrl_1504227377.log Error: can't open any of /var/tmp/from_scwrl_1504227377.pdb or /var/tmp/from_scwrl_1504227377_b.pdb or /var/tmp/from_scwrl_1504227377_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_771304084.pdb -s /var/tmp/to_scwrl_771304084.seq -o /var/tmp/from_scwrl_771304084.pdb > /var/tmp/scwrl_771304084.log Error: can't open any of /var/tmp/from_scwrl_771304084.pdb or /var/tmp/from_scwrl_771304084_b.pdb or /var/tmp/from_scwrl_771304084_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_609138124.pdb -s /var/tmp/to_scwrl_609138124.seq -o /var/tmp/from_scwrl_609138124.pdb > /var/tmp/scwrl_609138124.log Error: can't open any of /var/tmp/from_scwrl_609138124.pdb or /var/tmp/from_scwrl_609138124_b.pdb or /var/tmp/from_scwrl_609138124_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_112996419.pdb -s /var/tmp/to_scwrl_112996419.seq -o /var/tmp/from_scwrl_112996419.pdb > /var/tmp/scwrl_112996419.log Error: can't open any of /var/tmp/from_scwrl_112996419.pdb or /var/tmp/from_scwrl_112996419_b.pdb or /var/tmp/from_scwrl_112996419_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_241433530.pdb -s /var/tmp/to_scwrl_241433530.seq -o /var/tmp/from_scwrl_241433530.pdb > /var/tmp/scwrl_241433530.log Error: can't open any of /var/tmp/from_scwrl_241433530.pdb or /var/tmp/from_scwrl_241433530_b.pdb or /var/tmp/from_scwrl_241433530_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_476826673.pdb -s /var/tmp/to_scwrl_476826673.seq -o /var/tmp/from_scwrl_476826673.pdb > /var/tmp/scwrl_476826673.log Error: can't open any of /var/tmp/from_scwrl_476826673.pdb or /var/tmp/from_scwrl_476826673_b.pdb or /var/tmp/from_scwrl_476826673_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_478354179.pdb -s /var/tmp/to_scwrl_478354179.seq -o /var/tmp/from_scwrl_478354179.pdb > /var/tmp/scwrl_478354179.log Error: can't open any of /var/tmp/from_scwrl_478354179.pdb or /var/tmp/from_scwrl_478354179_b.pdb or /var/tmp/from_scwrl_478354179_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1306081669.pdb -s /var/tmp/to_scwrl_1306081669.seq -o /var/tmp/from_scwrl_1306081669.pdb > /var/tmp/scwrl_1306081669.log Error: can't open any of /var/tmp/from_scwrl_1306081669.pdb or /var/tmp/from_scwrl_1306081669_b.pdb or /var/tmp/from_scwrl_1306081669_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1081232659.pdb -s /var/tmp/to_scwrl_1081232659.seq -o /var/tmp/from_scwrl_1081232659.pdb > /var/tmp/scwrl_1081232659.log Error: can't open any of /var/tmp/from_scwrl_1081232659.pdb or /var/tmp/from_scwrl_1081232659_b.pdb or /var/tmp/from_scwrl_1081232659_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2023112815.pdb -s /var/tmp/to_scwrl_2023112815.seq -o /var/tmp/from_scwrl_2023112815.pdb > /var/tmp/scwrl_2023112815.log Error: can't open any of /var/tmp/from_scwrl_2023112815.pdb or /var/tmp/from_scwrl_2023112815_b.pdb or /var/tmp/from_scwrl_2023112815_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1847910614.pdb -s /var/tmp/to_scwrl_1847910614.seq -o /var/tmp/from_scwrl_1847910614.pdb > /var/tmp/scwrl_1847910614.log Error: can't open any of /var/tmp/from_scwrl_1847910614.pdb or /var/tmp/from_scwrl_1847910614_b.pdb or /var/tmp/from_scwrl_1847910614_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_619239321.pdb -s /var/tmp/to_scwrl_619239321.seq -o /var/tmp/from_scwrl_619239321.pdb > /var/tmp/scwrl_619239321.log Error: can't open any of /var/tmp/from_scwrl_619239321.pdb or /var/tmp/from_scwrl_619239321_b.pdb or /var/tmp/from_scwrl_619239321_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2064067936.pdb -s /var/tmp/to_scwrl_2064067936.seq -o /var/tmp/from_scwrl_2064067936.pdb > /var/tmp/scwrl_2064067936.log Error: can't open any of /var/tmp/from_scwrl_2064067936.pdb or /var/tmp/from_scwrl_2064067936_b.pdb or /var/tmp/from_scwrl_2064067936_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_994943988.pdb -s /var/tmp/to_scwrl_994943988.seq -o /var/tmp/from_scwrl_994943988.pdb > /var/tmp/scwrl_994943988.log Error: can't open any of /var/tmp/from_scwrl_994943988.pdb or /var/tmp/from_scwrl_994943988_b.pdb or /var/tmp/from_scwrl_994943988_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_113649464.pdb -s /var/tmp/to_scwrl_113649464.seq -o /var/tmp/from_scwrl_113649464.pdb > /var/tmp/scwrl_113649464.log Error: can't open any of /var/tmp/from_scwrl_113649464.pdb or /var/tmp/from_scwrl_113649464_b.pdb or /var/tmp/from_scwrl_113649464_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_647867357.pdb -s /var/tmp/to_scwrl_647867357.seq -o /var/tmp/from_scwrl_647867357.pdb > /var/tmp/scwrl_647867357.log Error: can't open any of /var/tmp/from_scwrl_647867357.pdb or /var/tmp/from_scwrl_647867357_b.pdb or /var/tmp/from_scwrl_647867357_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1997904672.pdb -s /var/tmp/to_scwrl_1997904672.seq -o /var/tmp/from_scwrl_1997904672.pdb > /var/tmp/scwrl_1997904672.log Error: can't open any of /var/tmp/from_scwrl_1997904672.pdb or /var/tmp/from_scwrl_1997904672_b.pdb or /var/tmp/from_scwrl_1997904672_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_91934557.pdb -s /var/tmp/to_scwrl_91934557.seq -o /var/tmp/from_scwrl_91934557.pdb > /var/tmp/scwrl_91934557.log Error: can't open any of /var/tmp/from_scwrl_91934557.pdb or /var/tmp/from_scwrl_91934557_b.pdb or /var/tmp/from_scwrl_91934557_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_7805225.pdb -s /var/tmp/to_scwrl_7805225.seq -o /var/tmp/from_scwrl_7805225.pdb > /var/tmp/scwrl_7805225.log Error: can't open any of /var/tmp/from_scwrl_7805225.pdb or /var/tmp/from_scwrl_7805225_b.pdb or /var/tmp/from_scwrl_7805225_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_386842395.pdb -s /var/tmp/to_scwrl_386842395.seq -o /var/tmp/from_scwrl_386842395.pdb > /var/tmp/scwrl_386842395.log Error: can't open any of /var/tmp/from_scwrl_386842395.pdb or /var/tmp/from_scwrl_386842395_b.pdb or /var/tmp/from_scwrl_386842395_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1512673129.pdb -s /var/tmp/to_scwrl_1512673129.seq -o /var/tmp/from_scwrl_1512673129.pdb > /var/tmp/scwrl_1512673129.log Error: can't open any of /var/tmp/from_scwrl_1512673129.pdb or /var/tmp/from_scwrl_1512673129_b.pdb or /var/tmp/from_scwrl_1512673129_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_335265904.pdb -s /var/tmp/to_scwrl_335265904.seq -o /var/tmp/from_scwrl_335265904.pdb > /var/tmp/scwrl_335265904.log Error: can't open any of /var/tmp/from_scwrl_335265904.pdb or /var/tmp/from_scwrl_335265904_b.pdb or /var/tmp/from_scwrl_335265904_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_403650961.pdb -s /var/tmp/to_scwrl_403650961.seq -o /var/tmp/from_scwrl_403650961.pdb > /var/tmp/scwrl_403650961.log Error: can't open any of /var/tmp/from_scwrl_403650961.pdb or /var/tmp/from_scwrl_403650961_b.pdb or /var/tmp/from_scwrl_403650961_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1989192726.pdb -s /var/tmp/to_scwrl_1989192726.seq -o /var/tmp/from_scwrl_1989192726.pdb > /var/tmp/scwrl_1989192726.log Error: can't open any of /var/tmp/from_scwrl_1989192726.pdb or /var/tmp/from_scwrl_1989192726_b.pdb or /var/tmp/from_scwrl_1989192726_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1418679212.pdb -s /var/tmp/to_scwrl_1418679212.seq -o /var/tmp/from_scwrl_1418679212.pdb > /var/tmp/scwrl_1418679212.log Error: can't open any of /var/tmp/from_scwrl_1418679212.pdb or /var/tmp/from_scwrl_1418679212_b.pdb or /var/tmp/from_scwrl_1418679212_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2099277622.pdb -s /var/tmp/to_scwrl_2099277622.seq -o /var/tmp/from_scwrl_2099277622.pdb > /var/tmp/scwrl_2099277622.log Error: can't open any of /var/tmp/from_scwrl_2099277622.pdb or /var/tmp/from_scwrl_2099277622_b.pdb or /var/tmp/from_scwrl_2099277622_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1745509244.pdb -s /var/tmp/to_scwrl_1745509244.seq -o /var/tmp/from_scwrl_1745509244.pdb > /var/tmp/scwrl_1745509244.log Error: can't open any of /var/tmp/from_scwrl_1745509244.pdb or /var/tmp/from_scwrl_1745509244_b.pdb or /var/tmp/from_scwrl_1745509244_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2014367831.pdb -s /var/tmp/to_scwrl_2014367831.seq -o /var/tmp/from_scwrl_2014367831.pdb > /var/tmp/scwrl_2014367831.log Error: can't open any of /var/tmp/from_scwrl_2014367831.pdb or /var/tmp/from_scwrl_2014367831_b.pdb or /var/tmp/from_scwrl_2014367831_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_909837863.pdb -s /var/tmp/to_scwrl_909837863.seq -o /var/tmp/from_scwrl_909837863.pdb > /var/tmp/scwrl_909837863.log Error: can't open any of /var/tmp/from_scwrl_909837863.pdb or /var/tmp/from_scwrl_909837863_b.pdb or /var/tmp/from_scwrl_909837863_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1187191909.pdb -s /var/tmp/to_scwrl_1187191909.seq -o /var/tmp/from_scwrl_1187191909.pdb > /var/tmp/scwrl_1187191909.log Error: can't open any of /var/tmp/from_scwrl_1187191909.pdb or /var/tmp/from_scwrl_1187191909_b.pdb or /var/tmp/from_scwrl_1187191909_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2090525964.pdb -s /var/tmp/to_scwrl_2090525964.seq -o /var/tmp/from_scwrl_2090525964.pdb > /var/tmp/scwrl_2090525964.log Error: can't open any of /var/tmp/from_scwrl_2090525964.pdb or /var/tmp/from_scwrl_2090525964_b.pdb or /var/tmp/from_scwrl_2090525964_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_266581593.pdb -s /var/tmp/to_scwrl_266581593.seq -o /var/tmp/from_scwrl_266581593.pdb > /var/tmp/scwrl_266581593.log Error: can't open any of /var/tmp/from_scwrl_266581593.pdb or /var/tmp/from_scwrl_266581593_b.pdb or /var/tmp/from_scwrl_266581593_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1958495993.pdb -s /var/tmp/to_scwrl_1958495993.seq -o /var/tmp/from_scwrl_1958495993.pdb > /var/tmp/scwrl_1958495993.log Error: can't open any of /var/tmp/from_scwrl_1958495993.pdb or /var/tmp/from_scwrl_1958495993_b.pdb or /var/tmp/from_scwrl_1958495993_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_552180441.pdb -s /var/tmp/to_scwrl_552180441.seq -o /var/tmp/from_scwrl_552180441.pdb > /var/tmp/scwrl_552180441.log Error: can't open any of /var/tmp/from_scwrl_552180441.pdb or /var/tmp/from_scwrl_552180441_b.pdb or /var/tmp/from_scwrl_552180441_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_379578012.pdb -s /var/tmp/to_scwrl_379578012.seq -o /var/tmp/from_scwrl_379578012.pdb > /var/tmp/scwrl_379578012.log Error: can't open any of /var/tmp/from_scwrl_379578012.pdb or /var/tmp/from_scwrl_379578012_b.pdb or /var/tmp/from_scwrl_379578012_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_52445876.pdb -s /var/tmp/to_scwrl_52445876.seq -o /var/tmp/from_scwrl_52445876.pdb > /var/tmp/scwrl_52445876.log Error: can't open any of /var/tmp/from_scwrl_52445876.pdb or /var/tmp/from_scwrl_52445876_b.pdb or /var/tmp/from_scwrl_52445876_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1029007114.pdb -s /var/tmp/to_scwrl_1029007114.seq -o /var/tmp/from_scwrl_1029007114.pdb > /var/tmp/scwrl_1029007114.log Error: can't open any of /var/tmp/from_scwrl_1029007114.pdb or /var/tmp/from_scwrl_1029007114_b.pdb or /var/tmp/from_scwrl_1029007114_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_857932191.pdb -s /var/tmp/to_scwrl_857932191.seq -o /var/tmp/from_scwrl_857932191.pdb > /var/tmp/scwrl_857932191.log Error: can't open any of /var/tmp/from_scwrl_857932191.pdb or /var/tmp/from_scwrl_857932191_b.pdb or /var/tmp/from_scwrl_857932191_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1358527545.pdb -s /var/tmp/to_scwrl_1358527545.seq -o /var/tmp/from_scwrl_1358527545.pdb > /var/tmp/scwrl_1358527545.log Error: can't open any of /var/tmp/from_scwrl_1358527545.pdb or /var/tmp/from_scwrl_1358527545_b.pdb or /var/tmp/from_scwrl_1358527545_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2110239773.pdb -s /var/tmp/to_scwrl_2110239773.seq -o /var/tmp/from_scwrl_2110239773.pdb > /var/tmp/scwrl_2110239773.log Error: can't open any of /var/tmp/from_scwrl_2110239773.pdb or /var/tmp/from_scwrl_2110239773_b.pdb or /var/tmp/from_scwrl_2110239773_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_733561359.pdb -s /var/tmp/to_scwrl_733561359.seq -o /var/tmp/from_scwrl_733561359.pdb > /var/tmp/scwrl_733561359.log Error: can't open any of /var/tmp/from_scwrl_733561359.pdb or /var/tmp/from_scwrl_733561359_b.pdb or /var/tmp/from_scwrl_733561359_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1058954513.pdb -s /var/tmp/to_scwrl_1058954513.seq -o /var/tmp/from_scwrl_1058954513.pdb > /var/tmp/scwrl_1058954513.log Error: can't open any of /var/tmp/from_scwrl_1058954513.pdb or /var/tmp/from_scwrl_1058954513_b.pdb or /var/tmp/from_scwrl_1058954513_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_581995447.pdb -s /var/tmp/to_scwrl_581995447.seq -o /var/tmp/from_scwrl_581995447.pdb > /var/tmp/scwrl_581995447.log Error: can't open any of /var/tmp/from_scwrl_581995447.pdb or /var/tmp/from_scwrl_581995447_b.pdb or /var/tmp/from_scwrl_581995447_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_650145649.pdb -s /var/tmp/to_scwrl_650145649.seq -o /var/tmp/from_scwrl_650145649.pdb > /var/tmp/scwrl_650145649.log Error: can't open any of /var/tmp/from_scwrl_650145649.pdb or /var/tmp/from_scwrl_650145649_b.pdb or /var/tmp/from_scwrl_650145649_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2053898501.pdb -s /var/tmp/to_scwrl_2053898501.seq -o /var/tmp/from_scwrl_2053898501.pdb > /var/tmp/scwrl_2053898501.log Error: can't open any of /var/tmp/from_scwrl_2053898501.pdb or /var/tmp/from_scwrl_2053898501_b.pdb or /var/tmp/from_scwrl_2053898501_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_695644911.pdb -s /var/tmp/to_scwrl_695644911.seq -o /var/tmp/from_scwrl_695644911.pdb > /var/tmp/scwrl_695644911.log Error: can't open any of /var/tmp/from_scwrl_695644911.pdb or /var/tmp/from_scwrl_695644911_b.pdb or /var/tmp/from_scwrl_695644911_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1298013005.pdb -s /var/tmp/to_scwrl_1298013005.seq -o /var/tmp/from_scwrl_1298013005.pdb > /var/tmp/scwrl_1298013005.log Error: can't open any of /var/tmp/from_scwrl_1298013005.pdb or /var/tmp/from_scwrl_1298013005_b.pdb or /var/tmp/from_scwrl_1298013005_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1904319526.pdb -s /var/tmp/to_scwrl_1904319526.seq -o /var/tmp/from_scwrl_1904319526.pdb > /var/tmp/scwrl_1904319526.log Error: can't open any of /var/tmp/from_scwrl_1904319526.pdb or /var/tmp/from_scwrl_1904319526_b.pdb or /var/tmp/from_scwrl_1904319526_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_787579468.pdb -s /var/tmp/to_scwrl_787579468.seq -o /var/tmp/from_scwrl_787579468.pdb > /var/tmp/scwrl_787579468.log Error: can't open any of /var/tmp/from_scwrl_787579468.pdb or /var/tmp/from_scwrl_787579468_b.pdb or /var/tmp/from_scwrl_787579468_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1305818230.pdb -s /var/tmp/to_scwrl_1305818230.seq -o /var/tmp/from_scwrl_1305818230.pdb > /var/tmp/scwrl_1305818230.log Error: can't open any of /var/tmp/from_scwrl_1305818230.pdb or /var/tmp/from_scwrl_1305818230_b.pdb or /var/tmp/from_scwrl_1305818230_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_143678275.pdb -s /var/tmp/to_scwrl_143678275.seq -o /var/tmp/from_scwrl_143678275.pdb > /var/tmp/scwrl_143678275.log Error: can't open any of /var/tmp/from_scwrl_143678275.pdb or /var/tmp/from_scwrl_143678275_b.pdb or /var/tmp/from_scwrl_143678275_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_152768950.pdb -s /var/tmp/to_scwrl_152768950.seq -o /var/tmp/from_scwrl_152768950.pdb > /var/tmp/scwrl_152768950.log Error: can't open any of /var/tmp/from_scwrl_152768950.pdb or /var/tmp/from_scwrl_152768950_b.pdb or /var/tmp/from_scwrl_152768950_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1641084134.pdb -s /var/tmp/to_scwrl_1641084134.seq -o /var/tmp/from_scwrl_1641084134.pdb > /var/tmp/scwrl_1641084134.log Error: can't open any of /var/tmp/from_scwrl_1641084134.pdb or /var/tmp/from_scwrl_1641084134_b.pdb or /var/tmp/from_scwrl_1641084134_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_547329236.pdb -s /var/tmp/to_scwrl_547329236.seq -o /var/tmp/from_scwrl_547329236.pdb > /var/tmp/scwrl_547329236.log Error: can't open any of /var/tmp/from_scwrl_547329236.pdb or /var/tmp/from_scwrl_547329236_b.pdb or /var/tmp/from_scwrl_547329236_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2141961677.pdb -s /var/tmp/to_scwrl_2141961677.seq -o /var/tmp/from_scwrl_2141961677.pdb > /var/tmp/scwrl_2141961677.log Error: can't open any of /var/tmp/from_scwrl_2141961677.pdb or /var/tmp/from_scwrl_2141961677_b.pdb or /var/tmp/from_scwrl_2141961677_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_912279700.pdb -s /var/tmp/to_scwrl_912279700.seq -o /var/tmp/from_scwrl_912279700.pdb > /var/tmp/scwrl_912279700.log Error: can't open any of /var/tmp/from_scwrl_912279700.pdb or /var/tmp/from_scwrl_912279700_b.pdb or /var/tmp/from_scwrl_912279700_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_499123212.pdb -s /var/tmp/to_scwrl_499123212.seq -o /var/tmp/from_scwrl_499123212.pdb > /var/tmp/scwrl_499123212.log Error: can't open any of /var/tmp/from_scwrl_499123212.pdb or /var/tmp/from_scwrl_499123212_b.pdb or /var/tmp/from_scwrl_499123212_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1739987274.pdb -s /var/tmp/to_scwrl_1739987274.seq -o /var/tmp/from_scwrl_1739987274.pdb > /var/tmp/scwrl_1739987274.log Error: can't open any of /var/tmp/from_scwrl_1739987274.pdb or /var/tmp/from_scwrl_1739987274_b.pdb or /var/tmp/from_scwrl_1739987274_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_779163884.pdb -s /var/tmp/to_scwrl_779163884.seq -o /var/tmp/from_scwrl_779163884.pdb > /var/tmp/scwrl_779163884.log Error: can't open any of /var/tmp/from_scwrl_779163884.pdb or /var/tmp/from_scwrl_779163884_b.pdb or /var/tmp/from_scwrl_779163884_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1408961074.pdb -s /var/tmp/to_scwrl_1408961074.seq -o /var/tmp/from_scwrl_1408961074.pdb > /var/tmp/scwrl_1408961074.log Error: can't open any of /var/tmp/from_scwrl_1408961074.pdb or /var/tmp/from_scwrl_1408961074_b.pdb or /var/tmp/from_scwrl_1408961074_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_779695537.pdb -s /var/tmp/to_scwrl_779695537.seq -o /var/tmp/from_scwrl_779695537.pdb > /var/tmp/scwrl_779695537.log Error: can't open any of /var/tmp/from_scwrl_779695537.pdb or /var/tmp/from_scwrl_779695537_b.pdb or /var/tmp/from_scwrl_779695537_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_722206201.pdb -s /var/tmp/to_scwrl_722206201.seq -o /var/tmp/from_scwrl_722206201.pdb > /var/tmp/scwrl_722206201.log Error: can't open any of /var/tmp/from_scwrl_722206201.pdb or /var/tmp/from_scwrl_722206201_b.pdb or /var/tmp/from_scwrl_722206201_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1675542667.pdb -s /var/tmp/to_scwrl_1675542667.seq -o /var/tmp/from_scwrl_1675542667.pdb > /var/tmp/scwrl_1675542667.log Error: can't open any of /var/tmp/from_scwrl_1675542667.pdb or /var/tmp/from_scwrl_1675542667_b.pdb or /var/tmp/from_scwrl_1675542667_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_590707883.pdb -s /var/tmp/to_scwrl_590707883.seq -o /var/tmp/from_scwrl_590707883.pdb > /var/tmp/scwrl_590707883.log Error: can't open any of /var/tmp/from_scwrl_590707883.pdb or /var/tmp/from_scwrl_590707883_b.pdb or /var/tmp/from_scwrl_590707883_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1274386641.pdb -s /var/tmp/to_scwrl_1274386641.seq -o /var/tmp/from_scwrl_1274386641.pdb > /var/tmp/scwrl_1274386641.log Error: can't open any of /var/tmp/from_scwrl_1274386641.pdb or /var/tmp/from_scwrl_1274386641_b.pdb or /var/tmp/from_scwrl_1274386641_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2055120679.pdb -s /var/tmp/to_scwrl_2055120679.seq -o /var/tmp/from_scwrl_2055120679.pdb > /var/tmp/scwrl_2055120679.log Error: can't open any of /var/tmp/from_scwrl_2055120679.pdb or /var/tmp/from_scwrl_2055120679_b.pdb or /var/tmp/from_scwrl_2055120679_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_643153759.pdb -s /var/tmp/to_scwrl_643153759.seq -o /var/tmp/from_scwrl_643153759.pdb > /var/tmp/scwrl_643153759.log Error: can't open any of /var/tmp/from_scwrl_643153759.pdb or /var/tmp/from_scwrl_643153759_b.pdb or /var/tmp/from_scwrl_643153759_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_155910108.pdb -s /var/tmp/to_scwrl_155910108.seq -o /var/tmp/from_scwrl_155910108.pdb > /var/tmp/scwrl_155910108.log Error: can't open any of /var/tmp/from_scwrl_155910108.pdb or /var/tmp/from_scwrl_155910108_b.pdb or /var/tmp/from_scwrl_155910108_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_765569223.pdb -s /var/tmp/to_scwrl_765569223.seq -o /var/tmp/from_scwrl_765569223.pdb > /var/tmp/scwrl_765569223.log Error: can't open any of /var/tmp/from_scwrl_765569223.pdb or /var/tmp/from_scwrl_765569223_b.pdb or /var/tmp/from_scwrl_765569223_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2001681305.pdb -s /var/tmp/to_scwrl_2001681305.seq -o /var/tmp/from_scwrl_2001681305.pdb > /var/tmp/scwrl_2001681305.log Error: can't open any of /var/tmp/from_scwrl_2001681305.pdb or /var/tmp/from_scwrl_2001681305_b.pdb or /var/tmp/from_scwrl_2001681305_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_118666235.pdb -s /var/tmp/to_scwrl_118666235.seq -o /var/tmp/from_scwrl_118666235.pdb > /var/tmp/scwrl_118666235.log Error: can't open any of /var/tmp/from_scwrl_118666235.pdb or /var/tmp/from_scwrl_118666235_b.pdb or /var/tmp/from_scwrl_118666235_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1499130581.pdb -s /var/tmp/to_scwrl_1499130581.seq -o /var/tmp/from_scwrl_1499130581.pdb > /var/tmp/scwrl_1499130581.log Error: can't open any of /var/tmp/from_scwrl_1499130581.pdb or /var/tmp/from_scwrl_1499130581_b.pdb or /var/tmp/from_scwrl_1499130581_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_913152171.pdb -s /var/tmp/to_scwrl_913152171.seq -o /var/tmp/from_scwrl_913152171.pdb > /var/tmp/scwrl_913152171.log Error: can't open any of /var/tmp/from_scwrl_913152171.pdb or /var/tmp/from_scwrl_913152171_b.pdb or /var/tmp/from_scwrl_913152171_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_700661682.pdb -s /var/tmp/to_scwrl_700661682.seq -o /var/tmp/from_scwrl_700661682.pdb > /var/tmp/scwrl_700661682.log Error: can't open any of /var/tmp/from_scwrl_700661682.pdb or /var/tmp/from_scwrl_700661682_b.pdb or /var/tmp/from_scwrl_700661682_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1792583.pdb -s /var/tmp/to_scwrl_1792583.seq -o /var/tmp/from_scwrl_1792583.pdb > /var/tmp/scwrl_1792583.log Error: can't open any of /var/tmp/from_scwrl_1792583.pdb or /var/tmp/from_scwrl_1792583_b.pdb or /var/tmp/from_scwrl_1792583_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_819567025.pdb -s /var/tmp/to_scwrl_819567025.seq -o /var/tmp/from_scwrl_819567025.pdb > /var/tmp/scwrl_819567025.log Error: can't open any of /var/tmp/from_scwrl_819567025.pdb or /var/tmp/from_scwrl_819567025_b.pdb or /var/tmp/from_scwrl_819567025_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1396306593.pdb -s /var/tmp/to_scwrl_1396306593.seq -o /var/tmp/from_scwrl_1396306593.pdb > /var/tmp/scwrl_1396306593.log Error: can't open any of /var/tmp/from_scwrl_1396306593.pdb or /var/tmp/from_scwrl_1396306593_b.pdb or /var/tmp/from_scwrl_1396306593_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1299805588.pdb -s /var/tmp/to_scwrl_1299805588.seq -o /var/tmp/from_scwrl_1299805588.pdb > /var/tmp/scwrl_1299805588.log Error: can't open any of /var/tmp/from_scwrl_1299805588.pdb or /var/tmp/from_scwrl_1299805588_b.pdb or /var/tmp/from_scwrl_1299805588_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_576402905.pdb -s /var/tmp/to_scwrl_576402905.seq -o /var/tmp/from_scwrl_576402905.pdb > /var/tmp/scwrl_576402905.log Error: can't open any of /var/tmp/from_scwrl_576402905.pdb or /var/tmp/from_scwrl_576402905_b.pdb or /var/tmp/from_scwrl_576402905_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_36402414.pdb -s /var/tmp/to_scwrl_36402414.seq -o /var/tmp/from_scwrl_36402414.pdb > /var/tmp/scwrl_36402414.log Error: can't open any of /var/tmp/from_scwrl_36402414.pdb or /var/tmp/from_scwrl_36402414_b.pdb or /var/tmp/from_scwrl_36402414_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_458140172.pdb -s /var/tmp/to_scwrl_458140172.seq -o /var/tmp/from_scwrl_458140172.pdb > /var/tmp/scwrl_458140172.log Error: can't open any of /var/tmp/from_scwrl_458140172.pdb or /var/tmp/from_scwrl_458140172_b.pdb or /var/tmp/from_scwrl_458140172_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_720081180.pdb -s /var/tmp/to_scwrl_720081180.seq -o /var/tmp/from_scwrl_720081180.pdb > /var/tmp/scwrl_720081180.log Error: can't open any of /var/tmp/from_scwrl_720081180.pdb or /var/tmp/from_scwrl_720081180_b.pdb or /var/tmp/from_scwrl_720081180_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_189171365.pdb -s /var/tmp/to_scwrl_189171365.seq -o /var/tmp/from_scwrl_189171365.pdb > /var/tmp/scwrl_189171365.log Error: can't open any of /var/tmp/from_scwrl_189171365.pdb or /var/tmp/from_scwrl_189171365_b.pdb or /var/tmp/from_scwrl_189171365_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2099224306.pdb -s /var/tmp/to_scwrl_2099224306.seq -o /var/tmp/from_scwrl_2099224306.pdb > /var/tmp/scwrl_2099224306.log Error: can't open any of /var/tmp/from_scwrl_2099224306.pdb or /var/tmp/from_scwrl_2099224306_b.pdb or /var/tmp/from_scwrl_2099224306_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1267410415.pdb -s /var/tmp/to_scwrl_1267410415.seq -o /var/tmp/from_scwrl_1267410415.pdb > /var/tmp/scwrl_1267410415.log Error: can't open any of /var/tmp/from_scwrl_1267410415.pdb or /var/tmp/from_scwrl_1267410415_b.pdb or /var/tmp/from_scwrl_1267410415_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_183649395.pdb -s /var/tmp/to_scwrl_183649395.seq -o /var/tmp/from_scwrl_183649395.pdb > /var/tmp/scwrl_183649395.log Error: can't open any of /var/tmp/from_scwrl_183649395.pdb or /var/tmp/from_scwrl_183649395_b.pdb or /var/tmp/from_scwrl_183649395_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_864020359.pdb -s /var/tmp/to_scwrl_864020359.seq -o /var/tmp/from_scwrl_864020359.pdb > /var/tmp/scwrl_864020359.log Error: can't open any of /var/tmp/from_scwrl_864020359.pdb or /var/tmp/from_scwrl_864020359_b.pdb or /var/tmp/from_scwrl_864020359_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1766533627.pdb -s /var/tmp/to_scwrl_1766533627.seq -o /var/tmp/from_scwrl_1766533627.pdb > /var/tmp/scwrl_1766533627.log Error: can't open any of /var/tmp/from_scwrl_1766533627.pdb or /var/tmp/from_scwrl_1766533627_b.pdb or /var/tmp/from_scwrl_1766533627_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1923636669.pdb -s /var/tmp/to_scwrl_1923636669.seq -o /var/tmp/from_scwrl_1923636669.pdb > /var/tmp/scwrl_1923636669.log Error: can't open any of /var/tmp/from_scwrl_1923636669.pdb or /var/tmp/from_scwrl_1923636669_b.pdb or /var/tmp/from_scwrl_1923636669_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1643184242.pdb -s /var/tmp/to_scwrl_1643184242.seq -o /var/tmp/from_scwrl_1643184242.pdb > /var/tmp/scwrl_1643184242.log Error: can't open any of /var/tmp/from_scwrl_1643184242.pdb or /var/tmp/from_scwrl_1643184242_b.pdb or /var/tmp/from_scwrl_1643184242_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1028011055.pdb -s /var/tmp/to_scwrl_1028011055.seq -o /var/tmp/from_scwrl_1028011055.pdb > /var/tmp/scwrl_1028011055.log Error: can't open any of /var/tmp/from_scwrl_1028011055.pdb or /var/tmp/from_scwrl_1028011055_b.pdb or /var/tmp/from_scwrl_1028011055_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_555848559.pdb -s /var/tmp/to_scwrl_555848559.seq -o /var/tmp/from_scwrl_555848559.pdb > /var/tmp/scwrl_555848559.log Error: can't open any of /var/tmp/from_scwrl_555848559.pdb or /var/tmp/from_scwrl_555848559_b.pdb or /var/tmp/from_scwrl_555848559_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_217906796.pdb -s /var/tmp/to_scwrl_217906796.seq -o /var/tmp/from_scwrl_217906796.pdb > /var/tmp/scwrl_217906796.log Error: can't open any of /var/tmp/from_scwrl_217906796.pdb or /var/tmp/from_scwrl_217906796_b.pdb or /var/tmp/from_scwrl_217906796_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_556070075.pdb -s /var/tmp/to_scwrl_556070075.seq -o /var/tmp/from_scwrl_556070075.pdb > /var/tmp/scwrl_556070075.log Error: can't open any of /var/tmp/from_scwrl_556070075.pdb or /var/tmp/from_scwrl_556070075_b.pdb or /var/tmp/from_scwrl_556070075_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1146556441.pdb -s /var/tmp/to_scwrl_1146556441.seq -o /var/tmp/from_scwrl_1146556441.pdb > /var/tmp/scwrl_1146556441.log Error: can't open any of /var/tmp/from_scwrl_1146556441.pdb or /var/tmp/from_scwrl_1146556441_b.pdb or /var/tmp/from_scwrl_1146556441_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1492293437.pdb -s /var/tmp/to_scwrl_1492293437.seq -o /var/tmp/from_scwrl_1492293437.pdb > /var/tmp/scwrl_1492293437.log Error: can't open any of /var/tmp/from_scwrl_1492293437.pdb or /var/tmp/from_scwrl_1492293437_b.pdb or /var/tmp/from_scwrl_1492293437_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_463707107.pdb -s /var/tmp/to_scwrl_463707107.seq -o /var/tmp/from_scwrl_463707107.pdb > /var/tmp/scwrl_463707107.log Error: can't open any of /var/tmp/from_scwrl_463707107.pdb or /var/tmp/from_scwrl_463707107_b.pdb or /var/tmp/from_scwrl_463707107_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1789710200.pdb -s /var/tmp/to_scwrl_1789710200.seq -o /var/tmp/from_scwrl_1789710200.pdb > /var/tmp/scwrl_1789710200.log Error: can't open any of /var/tmp/from_scwrl_1789710200.pdb or /var/tmp/from_scwrl_1789710200_b.pdb or /var/tmp/from_scwrl_1789710200_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1648203546.pdb -s /var/tmp/to_scwrl_1648203546.seq -o /var/tmp/from_scwrl_1648203546.pdb > /var/tmp/scwrl_1648203546.log Error: can't open any of /var/tmp/from_scwrl_1648203546.pdb or /var/tmp/from_scwrl_1648203546_b.pdb or /var/tmp/from_scwrl_1648203546_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1229276329.pdb -s /var/tmp/to_scwrl_1229276329.seq -o /var/tmp/from_scwrl_1229276329.pdb > /var/tmp/scwrl_1229276329.log Error: can't open any of /var/tmp/from_scwrl_1229276329.pdb or /var/tmp/from_scwrl_1229276329_b.pdb or /var/tmp/from_scwrl_1229276329_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1643907858.pdb -s /var/tmp/to_scwrl_1643907858.seq -o /var/tmp/from_scwrl_1643907858.pdb > /var/tmp/scwrl_1643907858.log Error: can't open any of /var/tmp/from_scwrl_1643907858.pdb or /var/tmp/from_scwrl_1643907858_b.pdb or /var/tmp/from_scwrl_1643907858_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1766869781.pdb -s /var/tmp/to_scwrl_1766869781.seq -o /var/tmp/from_scwrl_1766869781.pdb > /var/tmp/scwrl_1766869781.log Error: can't open any of /var/tmp/from_scwrl_1766869781.pdb or /var/tmp/from_scwrl_1766869781_b.pdb or /var/tmp/from_scwrl_1766869781_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_580923265.pdb -s /var/tmp/to_scwrl_580923265.seq -o /var/tmp/from_scwrl_580923265.pdb > /var/tmp/scwrl_580923265.log Error: can't open any of /var/tmp/from_scwrl_580923265.pdb or /var/tmp/from_scwrl_580923265_b.pdb or /var/tmp/from_scwrl_580923265_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_409576383.pdb -s /var/tmp/to_scwrl_409576383.seq -o /var/tmp/from_scwrl_409576383.pdb > /var/tmp/scwrl_409576383.log Error: can't open any of /var/tmp/from_scwrl_409576383.pdb or /var/tmp/from_scwrl_409576383_b.pdb or /var/tmp/from_scwrl_409576383_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_320047816.pdb -s /var/tmp/to_scwrl_320047816.seq -o /var/tmp/from_scwrl_320047816.pdb > /var/tmp/scwrl_320047816.log Error: can't open any of /var/tmp/from_scwrl_320047816.pdb or /var/tmp/from_scwrl_320047816_b.pdb or /var/tmp/from_scwrl_320047816_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_582715848.pdb -s /var/tmp/to_scwrl_582715848.seq -o /var/tmp/from_scwrl_582715848.pdb > /var/tmp/scwrl_582715848.log Error: can't open any of /var/tmp/from_scwrl_582715848.pdb or /var/tmp/from_scwrl_582715848_b.pdb or /var/tmp/from_scwrl_582715848_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1229143407.pdb -s /var/tmp/to_scwrl_1229143407.seq -o /var/tmp/from_scwrl_1229143407.pdb > /var/tmp/scwrl_1229143407.log Error: can't open any of /var/tmp/from_scwrl_1229143407.pdb or /var/tmp/from_scwrl_1229143407_b.pdb or /var/tmp/from_scwrl_1229143407_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1716354409.pdb -s /var/tmp/to_scwrl_1716354409.seq -o /var/tmp/from_scwrl_1716354409.pdb > /var/tmp/scwrl_1716354409.log Error: can't open any of /var/tmp/from_scwrl_1716354409.pdb or /var/tmp/from_scwrl_1716354409_b.pdb or /var/tmp/from_scwrl_1716354409_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1882521437.pdb -s /var/tmp/to_scwrl_1882521437.seq -o /var/tmp/from_scwrl_1882521437.pdb > /var/tmp/scwrl_1882521437.log Error: can't open any of /var/tmp/from_scwrl_1882521437.pdb or /var/tmp/from_scwrl_1882521437_b.pdb or /var/tmp/from_scwrl_1882521437_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1805546312.pdb -s /var/tmp/to_scwrl_1805546312.seq -o /var/tmp/from_scwrl_1805546312.pdb > /var/tmp/scwrl_1805546312.log Error: can't open any of /var/tmp/from_scwrl_1805546312.pdb or /var/tmp/from_scwrl_1805546312_b.pdb or /var/tmp/from_scwrl_1805546312_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1752756824.pdb -s /var/tmp/to_scwrl_1752756824.seq -o /var/tmp/from_scwrl_1752756824.pdb > /var/tmp/scwrl_1752756824.log Error: can't open any of /var/tmp/from_scwrl_1752756824.pdb or /var/tmp/from_scwrl_1752756824_b.pdb or /var/tmp/from_scwrl_1752756824_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_193177962.pdb -s /var/tmp/to_scwrl_193177962.seq -o /var/tmp/from_scwrl_193177962.pdb > /var/tmp/scwrl_193177962.log Error: can't open any of /var/tmp/from_scwrl_193177962.pdb or /var/tmp/from_scwrl_193177962_b.pdb or /var/tmp/from_scwrl_193177962_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_378143845.pdb -s /var/tmp/to_scwrl_378143845.seq -o /var/tmp/from_scwrl_378143845.pdb > /var/tmp/scwrl_378143845.log Error: can't open any of /var/tmp/from_scwrl_378143845.pdb or /var/tmp/from_scwrl_378143845_b.pdb or /var/tmp/from_scwrl_378143845_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1941928189.pdb -s /var/tmp/to_scwrl_1941928189.seq -o /var/tmp/from_scwrl_1941928189.pdb > /var/tmp/scwrl_1941928189.log Error: can't open any of /var/tmp/from_scwrl_1941928189.pdb or /var/tmp/from_scwrl_1941928189_b.pdb or /var/tmp/from_scwrl_1941928189_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_144918622.pdb -s /var/tmp/to_scwrl_144918622.seq -o /var/tmp/from_scwrl_144918622.pdb > /var/tmp/scwrl_144918622.log Error: can't open any of /var/tmp/from_scwrl_144918622.pdb or /var/tmp/from_scwrl_144918622_b.pdb or /var/tmp/from_scwrl_144918622_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1645554261.pdb -s /var/tmp/to_scwrl_1645554261.seq -o /var/tmp/from_scwrl_1645554261.pdb > /var/tmp/scwrl_1645554261.log Error: can't open any of /var/tmp/from_scwrl_1645554261.pdb or /var/tmp/from_scwrl_1645554261_b.pdb or /var/tmp/from_scwrl_1645554261_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2125577584.pdb -s /var/tmp/to_scwrl_2125577584.seq -o /var/tmp/from_scwrl_2125577584.pdb > /var/tmp/scwrl_2125577584.log Error: can't open any of /var/tmp/from_scwrl_2125577584.pdb or /var/tmp/from_scwrl_2125577584_b.pdb or /var/tmp/from_scwrl_2125577584_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1008938981.pdb -s /var/tmp/to_scwrl_1008938981.seq -o /var/tmp/from_scwrl_1008938981.pdb > /var/tmp/scwrl_1008938981.log Error: can't open any of /var/tmp/from_scwrl_1008938981.pdb or /var/tmp/from_scwrl_1008938981_b.pdb or /var/tmp/from_scwrl_1008938981_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1264604241.pdb -s /var/tmp/to_scwrl_1264604241.seq -o /var/tmp/from_scwrl_1264604241.pdb > /var/tmp/scwrl_1264604241.log Error: can't open any of /var/tmp/from_scwrl_1264604241.pdb or /var/tmp/from_scwrl_1264604241_b.pdb or /var/tmp/from_scwrl_1264604241_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1901730606.pdb -s /var/tmp/to_scwrl_1901730606.seq -o /var/tmp/from_scwrl_1901730606.pdb > /var/tmp/scwrl_1901730606.log Error: can't open any of /var/tmp/from_scwrl_1901730606.pdb or /var/tmp/from_scwrl_1901730606_b.pdb or /var/tmp/from_scwrl_1901730606_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_504639577.pdb -s /var/tmp/to_scwrl_504639577.seq -o /var/tmp/from_scwrl_504639577.pdb > /var/tmp/scwrl_504639577.log Error: can't open any of /var/tmp/from_scwrl_504639577.pdb or /var/tmp/from_scwrl_504639577_b.pdb or /var/tmp/from_scwrl_504639577_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_145131650.pdb -s /var/tmp/to_scwrl_145131650.seq -o /var/tmp/from_scwrl_145131650.pdb > /var/tmp/scwrl_145131650.log Error: can't open any of /var/tmp/from_scwrl_145131650.pdb or /var/tmp/from_scwrl_145131650_b.pdb or /var/tmp/from_scwrl_145131650_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_310095518.pdb -s /var/tmp/to_scwrl_310095518.seq -o /var/tmp/from_scwrl_310095518.pdb > /var/tmp/scwrl_310095518.log Error: can't open any of /var/tmp/from_scwrl_310095518.pdb or /var/tmp/from_scwrl_310095518_b.pdb or /var/tmp/from_scwrl_310095518_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_722546373.pdb -s /var/tmp/to_scwrl_722546373.seq -o /var/tmp/from_scwrl_722546373.pdb > /var/tmp/scwrl_722546373.log Error: can't open any of /var/tmp/from_scwrl_722546373.pdb or /var/tmp/from_scwrl_722546373_b.pdb or /var/tmp/from_scwrl_722546373_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_701201725.pdb -s /var/tmp/to_scwrl_701201725.seq -o /var/tmp/from_scwrl_701201725.pdb > /var/tmp/scwrl_701201725.log Error: can't open any of /var/tmp/from_scwrl_701201725.pdb or /var/tmp/from_scwrl_701201725_b.pdb or /var/tmp/from_scwrl_701201725_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1456651959.pdb -s /var/tmp/to_scwrl_1456651959.seq -o /var/tmp/from_scwrl_1456651959.pdb > /var/tmp/scwrl_1456651959.log Error: can't open any of /var/tmp/from_scwrl_1456651959.pdb or /var/tmp/from_scwrl_1456651959_b.pdb or /var/tmp/from_scwrl_1456651959_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_67356164.pdb -s /var/tmp/to_scwrl_67356164.seq -o /var/tmp/from_scwrl_67356164.pdb > /var/tmp/scwrl_67356164.log Error: can't open any of /var/tmp/from_scwrl_67356164.pdb or /var/tmp/from_scwrl_67356164_b.pdb or /var/tmp/from_scwrl_67356164_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1164908832.pdb -s /var/tmp/to_scwrl_1164908832.seq -o /var/tmp/from_scwrl_1164908832.pdb > /var/tmp/scwrl_1164908832.log Error: can't open any of /var/tmp/from_scwrl_1164908832.pdb or /var/tmp/from_scwrl_1164908832_b.pdb or /var/tmp/from_scwrl_1164908832_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1098878512.pdb -s /var/tmp/to_scwrl_1098878512.seq -o /var/tmp/from_scwrl_1098878512.pdb > /var/tmp/scwrl_1098878512.log Error: can't open any of /var/tmp/from_scwrl_1098878512.pdb or /var/tmp/from_scwrl_1098878512_b.pdb or /var/tmp/from_scwrl_1098878512_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1715559710.pdb -s /var/tmp/to_scwrl_1715559710.seq -o /var/tmp/from_scwrl_1715559710.pdb > /var/tmp/scwrl_1715559710.log Error: can't open any of /var/tmp/from_scwrl_1715559710.pdb or /var/tmp/from_scwrl_1715559710_b.pdb or /var/tmp/from_scwrl_1715559710_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_246701515.pdb -s /var/tmp/to_scwrl_246701515.seq -o /var/tmp/from_scwrl_246701515.pdb > /var/tmp/scwrl_246701515.log Error: can't open any of /var/tmp/from_scwrl_246701515.pdb or /var/tmp/from_scwrl_246701515_b.pdb or /var/tmp/from_scwrl_246701515_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_595302725.pdb -s /var/tmp/to_scwrl_595302725.seq -o /var/tmp/from_scwrl_595302725.pdb > /var/tmp/scwrl_595302725.log Error: can't open any of /var/tmp/from_scwrl_595302725.pdb or /var/tmp/from_scwrl_595302725_b.pdb or /var/tmp/from_scwrl_595302725_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1334945844.pdb -s /var/tmp/to_scwrl_1334945844.seq -o /var/tmp/from_scwrl_1334945844.pdb > /var/tmp/scwrl_1334945844.log Error: can't open any of /var/tmp/from_scwrl_1334945844.pdb or /var/tmp/from_scwrl_1334945844_b.pdb or /var/tmp/from_scwrl_1334945844_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_827624780.pdb -s /var/tmp/to_scwrl_827624780.seq -o /var/tmp/from_scwrl_827624780.pdb > /var/tmp/scwrl_827624780.log Error: can't open any of /var/tmp/from_scwrl_827624780.pdb or /var/tmp/from_scwrl_827624780_b.pdb or /var/tmp/from_scwrl_827624780_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1004879108.pdb -s /var/tmp/to_scwrl_1004879108.seq -o /var/tmp/from_scwrl_1004879108.pdb > /var/tmp/scwrl_1004879108.log Error: can't open any of /var/tmp/from_scwrl_1004879108.pdb or /var/tmp/from_scwrl_1004879108_b.pdb or /var/tmp/from_scwrl_1004879108_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1654993660.pdb -s /var/tmp/to_scwrl_1654993660.seq -o /var/tmp/from_scwrl_1654993660.pdb > /var/tmp/scwrl_1654993660.log Error: can't open any of /var/tmp/from_scwrl_1654993660.pdb or /var/tmp/from_scwrl_1654993660_b.pdb or /var/tmp/from_scwrl_1654993660_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1410340628.pdb -s /var/tmp/to_scwrl_1410340628.seq -o /var/tmp/from_scwrl_1410340628.pdb > /var/tmp/scwrl_1410340628.log Error: can't open any of /var/tmp/from_scwrl_1410340628.pdb or /var/tmp/from_scwrl_1410340628_b.pdb or /var/tmp/from_scwrl_1410340628_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_86538868.pdb -s /var/tmp/to_scwrl_86538868.seq -o /var/tmp/from_scwrl_86538868.pdb > /var/tmp/scwrl_86538868.log Error: can't open any of /var/tmp/from_scwrl_86538868.pdb or /var/tmp/from_scwrl_86538868_b.pdb or /var/tmp/from_scwrl_86538868_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1223864423.pdb -s /var/tmp/to_scwrl_1223864423.seq -o /var/tmp/from_scwrl_1223864423.pdb > /var/tmp/scwrl_1223864423.log Error: can't open any of /var/tmp/from_scwrl_1223864423.pdb or /var/tmp/from_scwrl_1223864423_b.pdb or /var/tmp/from_scwrl_1223864423_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1145378418.pdb -s /var/tmp/to_scwrl_1145378418.seq -o /var/tmp/from_scwrl_1145378418.pdb > /var/tmp/scwrl_1145378418.log Error: can't open any of /var/tmp/from_scwrl_1145378418.pdb or /var/tmp/from_scwrl_1145378418_b.pdb or /var/tmp/from_scwrl_1145378418_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1892085181.pdb -s /var/tmp/to_scwrl_1892085181.seq -o /var/tmp/from_scwrl_1892085181.pdb > /var/tmp/scwrl_1892085181.log Error: can't open any of /var/tmp/from_scwrl_1892085181.pdb or /var/tmp/from_scwrl_1892085181_b.pdb or /var/tmp/from_scwrl_1892085181_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_829137601.pdb -s /var/tmp/to_scwrl_829137601.seq -o /var/tmp/from_scwrl_829137601.pdb > /var/tmp/scwrl_829137601.log Error: can't open any of /var/tmp/from_scwrl_829137601.pdb or /var/tmp/from_scwrl_829137601_b.pdb or /var/tmp/from_scwrl_829137601_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1338556380.pdb -s /var/tmp/to_scwrl_1338556380.seq -o /var/tmp/from_scwrl_1338556380.pdb > /var/tmp/scwrl_1338556380.log Error: can't open any of /var/tmp/from_scwrl_1338556380.pdb or /var/tmp/from_scwrl_1338556380_b.pdb or /var/tmp/from_scwrl_1338556380_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_122745379.pdb -s /var/tmp/to_scwrl_122745379.seq -o /var/tmp/from_scwrl_122745379.pdb > /var/tmp/scwrl_122745379.log Error: can't open any of /var/tmp/from_scwrl_122745379.pdb or /var/tmp/from_scwrl_122745379_b.pdb or /var/tmp/from_scwrl_122745379_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_623582143.pdb -s /var/tmp/to_scwrl_623582143.seq -o /var/tmp/from_scwrl_623582143.pdb > /var/tmp/scwrl_623582143.log Error: can't open any of /var/tmp/from_scwrl_623582143.pdb or /var/tmp/from_scwrl_623582143_b.pdb or /var/tmp/from_scwrl_623582143_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1483475002.pdb -s /var/tmp/to_scwrl_1483475002.seq -o /var/tmp/from_scwrl_1483475002.pdb > /var/tmp/scwrl_1483475002.log Error: can't open any of /var/tmp/from_scwrl_1483475002.pdb or /var/tmp/from_scwrl_1483475002_b.pdb or /var/tmp/from_scwrl_1483475002_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1768299640.pdb -s /var/tmp/to_scwrl_1768299640.seq -o /var/tmp/from_scwrl_1768299640.pdb > /var/tmp/scwrl_1768299640.log Error: can't open any of /var/tmp/from_scwrl_1768299640.pdb or /var/tmp/from_scwrl_1768299640_b.pdb or /var/tmp/from_scwrl_1768299640_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_601676080.pdb -s /var/tmp/to_scwrl_601676080.seq -o /var/tmp/from_scwrl_601676080.pdb > /var/tmp/scwrl_601676080.log Error: can't open any of /var/tmp/from_scwrl_601676080.pdb or /var/tmp/from_scwrl_601676080_b.pdb or /var/tmp/from_scwrl_601676080_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_344930337.pdb -s /var/tmp/to_scwrl_344930337.seq -o /var/tmp/from_scwrl_344930337.pdb > /var/tmp/scwrl_344930337.log Error: can't open any of /var/tmp/from_scwrl_344930337.pdb or /var/tmp/from_scwrl_344930337_b.pdb or /var/tmp/from_scwrl_344930337_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_885420236.pdb -s /var/tmp/to_scwrl_885420236.seq -o /var/tmp/from_scwrl_885420236.pdb > /var/tmp/scwrl_885420236.log Error: can't open any of /var/tmp/from_scwrl_885420236.pdb or /var/tmp/from_scwrl_885420236_b.pdb or /var/tmp/from_scwrl_885420236_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_355923039.pdb -s /var/tmp/to_scwrl_355923039.seq -o /var/tmp/from_scwrl_355923039.pdb > /var/tmp/scwrl_355923039.log Error: can't open any of /var/tmp/from_scwrl_355923039.pdb or /var/tmp/from_scwrl_355923039_b.pdb or /var/tmp/from_scwrl_355923039_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_849569914.pdb -s /var/tmp/to_scwrl_849569914.seq -o /var/tmp/from_scwrl_849569914.pdb > /var/tmp/scwrl_849569914.log Error: can't open any of /var/tmp/from_scwrl_849569914.pdb or /var/tmp/from_scwrl_849569914_b.pdb or /var/tmp/from_scwrl_849569914_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1030551886.pdb -s /var/tmp/to_scwrl_1030551886.seq -o /var/tmp/from_scwrl_1030551886.pdb > /var/tmp/scwrl_1030551886.log Error: can't open any of /var/tmp/from_scwrl_1030551886.pdb or /var/tmp/from_scwrl_1030551886_b.pdb or /var/tmp/from_scwrl_1030551886_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_666018557.pdb -s /var/tmp/to_scwrl_666018557.seq -o /var/tmp/from_scwrl_666018557.pdb > /var/tmp/scwrl_666018557.log Error: can't open any of /var/tmp/from_scwrl_666018557.pdb or /var/tmp/from_scwrl_666018557_b.pdb or /var/tmp/from_scwrl_666018557_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1572116286.pdb -s /var/tmp/to_scwrl_1572116286.seq -o /var/tmp/from_scwrl_1572116286.pdb > /var/tmp/scwrl_1572116286.log Error: can't open any of /var/tmp/from_scwrl_1572116286.pdb or /var/tmp/from_scwrl_1572116286_b.pdb or /var/tmp/from_scwrl_1572116286_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1731753610.pdb -s /var/tmp/to_scwrl_1731753610.seq -o /var/tmp/from_scwrl_1731753610.pdb > /var/tmp/scwrl_1731753610.log Error: can't open any of /var/tmp/from_scwrl_1731753610.pdb or /var/tmp/from_scwrl_1731753610_b.pdb or /var/tmp/from_scwrl_1731753610_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_2122670516.pdb -s /var/tmp/to_scwrl_2122670516.seq -o /var/tmp/from_scwrl_2122670516.pdb > /var/tmp/scwrl_2122670516.log Error: can't open any of /var/tmp/from_scwrl_2122670516.pdb or /var/tmp/from_scwrl_2122670516_b.pdb or /var/tmp/from_scwrl_2122670516_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1639472450.pdb -s /var/tmp/to_scwrl_1639472450.seq -o /var/tmp/from_scwrl_1639472450.pdb > /var/tmp/scwrl_1639472450.log Error: can't open any of /var/tmp/from_scwrl_1639472450.pdb or /var/tmp/from_scwrl_1639472450_b.pdb or /var/tmp/from_scwrl_1639472450_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_749178796.pdb -s /var/tmp/to_scwrl_749178796.seq -o /var/tmp/from_scwrl_749178796.pdb > /var/tmp/scwrl_749178796.log Error: can't open any of /var/tmp/from_scwrl_749178796.pdb or /var/tmp/from_scwrl_749178796_b.pdb or /var/tmp/from_scwrl_749178796_a.pdb Error: no new SCWRL conformation added # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1074065381.pdb -s /var/tmp/to_scwrl_1074065381.seq -o /var/tmp/from_scwrl_1074065381.pdb > /var/tmp/scwrl_1074065381.log Error: can't open any of /var/tmp/from_scwrl_1074065381.pdb or /var/tmp/from_scwrl_1074065381_b.pdb or /var/tmp/from_scwrl_1074065381_a.pdb Error: no new SCWRL conformation added # naming current conformation panther3_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0386 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 270 ; scwrl -i /var/tmp/to_scwrl_1207548513.pdb -s /var/tmp/to_scwrl_1207548513.seq -o /var/tmp/from_scwrl_1207548513.pdb > /var/tmp/scwrl_1207548513.log Error: can't open any of /var/tmp/from_scwrl_1207548513.pdb or /var/tmp/from_scwrl_1207548513_b.pdb or /var/tmp/from_scwrl_1207548513_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 74.2227 sec, elapsed time= 88.1346 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 974.273 real_cost = 511.456 panther3_TS1-scwrl costs 2392.77 real_cost = 712.211 panther2_TS1-scwrl costs 1816.53 real_cost = 685.206 nFOLD_TS5-scwrl costs 6289.01 real_cost = 737.023 nFOLD_TS4-scwrl costs 13359.5 real_cost = 642.519 nFOLD_TS3-scwrl costs 17248.6 real_cost = 628.237 nFOLD_TS2-scwrl costs 9127.88 real_cost = 640.334 nFOLD_TS1-scwrl costs 6927.31 real_cost = 686.375 mGen-3D_TS1-scwrl costs 6414.59 real_cost = 702.602 keasar-server_TS5-scwrl costs 1390.38 real_cost = 567.287 keasar-server_TS4-scwrl costs 1276.34 real_cost = 574.621 keasar-server_TS3-scwrl costs 1031.86 real_cost = 505.681 keasar-server_TS2-scwrl costs 755.771 real_cost = 446.106 keasar-server_TS1-scwrl costs 925.416 real_cost = 490.994 karypis.srv_TS5-scwrl costs 668.207 real_cost = 422.648 karypis.srv_TS4-scwrl costs 876.854 real_cost = 473.855 karypis.srv_TS3-scwrl costs 370.893 real_cost = 362.096 karypis.srv_TS2-scwrl costs 733.111 real_cost = 423.463 karypis.srv_TS1-scwrl costs 893.174 real_cost = 487.503 karypis.srv.2_TS5-scwrl costs 399.22 real_cost = 387.901 karypis.srv.2_TS4-scwrl costs 398.825 real_cost = 367.791 karypis.srv.2_TS3-scwrl costs 971.176 real_cost = 397.605 karypis.srv.2_TS2-scwrl costs 399.717 real_cost = 387.781 karypis.srv.2_TS1-scwrl costs 370.654 real_cost = 369.587 forecast-s_AL5-scwrl costs 80482.8 real_cost = 663.537 forecast-s_AL4-scwrl costs 87421 real_cost = 714.949 forecast-s_AL3-scwrl costs 37647.6 real_cost = 735.591 forecast-s_AL2-scwrl costs 20924.6 real_cost = 709.673 forecast-s_AL1-scwrl costs 24956.7 real_cost = 737.738 beautshotbase_TS1-scwrl costs 1098.17 real_cost = 526.126 beautshot_TS1-scwrl costs 544.117 real_cost = 409.82 Zhang-Server_TS5-scwrl costs 353.482 real_cost = 363.747 Zhang-Server_TS4-scwrl costs 438.878 real_cost = 374.157 Zhang-Server_TS3-scwrl costs 314.143 real_cost = 374.204 Zhang-Server_TS2-scwrl costs 338.991 real_cost = 370.284 Zhang-Server_TS1-scwrl costs 316.542 real_cost = 371.598 UNI-EID_sfst_AL2-scwrl costs 31105.8 real_cost = 736.78 UNI-EID_sfst_AL1-scwrl costs 46059 real_cost = 733.18 UNI-EID_expm_TS1-scwrl costs 10826.7 real_cost = 661.325 UNI-EID_bnmx_TS2-scwrl costs 33816.9 real_cost = 714.543 UNI-EID_bnmx_TS1-scwrl costs 48018.2 real_cost = 729.531 SPARKS2_TS5-scwrl costs 369.092 real_cost = 387.124 SPARKS2_TS4-scwrl costs 330.919 real_cost = 370.65 SPARKS2_TS3-scwrl costs 335.419 real_cost = 387.205 SPARKS2_TS2-scwrl costs 364.864 real_cost = 368.067 SPARKS2_TS1-scwrl costs 393.592 real_cost = 379.789 SP4_TS5-scwrl costs 320.393 real_cost = 367.682 SP4_TS4-scwrl costs 353.706 real_cost = 359.584 SP4_TS3-scwrl costs 373.537 real_cost = 341.041 SP4_TS2-scwrl costs 341.86 real_cost = 361.661 SP4_TS1-scwrl costs 392.958 real_cost = 379.058 SP3_TS5-scwrl costs 349.234 real_cost = 356.744 SP3_TS4-scwrl costs 332.865 real_cost = 365.198 SP3_TS3-scwrl costs 361.659 real_cost = 361.261 SP3_TS2-scwrl costs 402.053 real_cost = 398.771 SP3_TS1-scwrl costs 384.857 real_cost = 374.164 SAM_T06_server_TS5-scwrl costs 1692.79 real_cost = 645.848 SAM_T06_server_TS4-scwrl costs 1556.21 real_cost = 621.669 SAM_T06_server_TS3-scwrl costs 1375.24 real_cost = 600.598 SAM_T06_server_TS2-scwrl costs 1390.46 real_cost = 600.973 SAM_T06_server_TS1-scwrl costs 267.593 real_cost = 376.375 SAM-T99_AL4-scwrl costs 23806.9 real_cost = 735.089 SAM-T99_AL3-scwrl costs 39933.2 real_cost = 722.356 SAM-T99_AL2-scwrl costs 28603.2 real_cost = 718.354 SAM-T99_AL1-scwrl costs 54684.4 real_cost = 726.739 SAM-T02_AL5-scwrl costs 3276.34 real_cost = 774.707 SAM-T02_AL4-scwrl costs 53438.7 real_cost = 737.988 SAM-T02_AL3-scwrl costs 7020.43 real_cost = 774.753 SAM-T02_AL2-scwrl costs 26565.6 real_cost = 722.705 SAM-T02_AL1-scwrl costs 38309.8 real_cost = 719.965 ROKKY_TS5-scwrl costs 7350.65 real_cost = 533.723 ROKKY_TS4-scwrl costs 7572.85 real_cost = 535.416 ROKKY_TS3-scwrl costs 8938.07 real_cost = 545.076 ROKKY_TS2-scwrl costs 7560.59 real_cost = 543.14 ROKKY_TS1-scwrl costs 4718.73 real_cost = 545.094 ROBETTA_TS5-scwrl costs 281.008 real_cost = 373.445 ROBETTA_TS4-scwrl costs 281.898 real_cost = 387.869 ROBETTA_TS3-scwrl costs 273.61 real_cost = 379.556 ROBETTA_TS2-scwrl costs 284.47 real_cost = 380.541 ROBETTA_TS1-scwrl costs 281.837 real_cost = 363.116 RAPTOR_TS5-scwrl costs 454.789 real_cost = 429.062 RAPTOR_TS4-scwrl costs 383.198 real_cost = 389.472 RAPTOR_TS3-scwrl costs 378.53 real_cost = 388.088 RAPTOR_TS2-scwrl costs 379.557 real_cost = 397.814 RAPTOR_TS1-scwrl costs 456.58 real_cost = 430.648 RAPTORESS_TS5-scwrl costs 456.58 real_cost = 430.648 RAPTORESS_TS4-scwrl costs 453.049 real_cost = 428.86 RAPTORESS_TS3-scwrl costs 374.356 real_cost = 391.274 RAPTORESS_TS2-scwrl costs 360.733 real_cost = 387.566 RAPTORESS_TS1-scwrl costs 344.776 real_cost = 331.977 RAPTOR-ACE_TS5-scwrl costs 406.226 real_cost = 384.732 RAPTOR-ACE_TS4-scwrl costs 692.504 real_cost = 399.039 RAPTOR-ACE_TS3-scwrl costs 5296.72 real_cost = 388.063 RAPTOR-ACE_TS2-scwrl costs 384.857 real_cost = 374.164 RAPTOR-ACE_TS1-scwrl costs 407.764 real_cost = 387.414 Pmodeller6_TS5-scwrl costs 940.482 real_cost = 481.371 Pmodeller6_TS4-scwrl costs 997.606 real_cost = 480.766 Pmodeller6_TS3-scwrl costs 281.008 real_cost = 373.445 Pmodeller6_TS2-scwrl costs 281.837 real_cost = 363.116 Pmodeller6_TS1-scwrl costs 281.898 real_cost = 387.869 Phyre-2_TS5-scwrl costs 346.712 real_cost = 379.526 Phyre-2_TS4-scwrl costs 340.329 real_cost = 375.606 Phyre-2_TS3-scwrl costs 333.52 real_cost = 374.733 Phyre-2_TS2-scwrl costs 340.313 real_cost = 378.144 Phyre-2_TS1-scwrl costs 333.062 real_cost = 381.264 Phyre-1_TS1-scwrl costs 1129.79 real_cost = 505.806 Pcons6_TS5-scwrl costs 1268.82 real_cost = 544.249 Pcons6_TS4-scwrl costs 1080.38 real_cost = 504.257 Pcons6_TS3-scwrl costs 827.521 real_cost = 480.849 Pcons6_TS2-scwrl costs 1202.35 real_cost = 545.516 Pcons6_TS1-scwrl costs 997.606 real_cost = 480.766 PROTINFO_TS5-scwrl costs 331.067 real_cost = 374.142 PROTINFO_TS4-scwrl costs 328.416 real_cost = 367.368 PROTINFO_TS3-scwrl costs 1059.64 real_cost = 521.869 PROTINFO_TS2-scwrl costs 1072.26 real_cost = 526.436 PROTINFO_TS1-scwrl costs 478.286 real_cost = 395.871 PROTINFO-AB_TS5-scwrl costs 328.146 real_cost = 378.844 PROTINFO-AB_TS4-scwrl costs 326.703 real_cost = 375.688 PROTINFO-AB_TS3-scwrl costs 328.452 real_cost = 379.302 PROTINFO-AB_TS2-scwrl costs 328.416 real_cost = 367.368 PROTINFO-AB_TS1-scwrl costs 328.452 real_cost = 379.302 POMYSL_TS5-scwrl costs 1788.91 real_cost = 727.658 POMYSL_TS4-scwrl costs 1790.93 real_cost = 749.445 POMYSL_TS3-scwrl costs 1792.86 real_cost = 701.4 POMYSL_TS2-scwrl costs 1783.59 real_cost = 724.42 POMYSL_TS1-scwrl costs 1797.93 real_cost = 715.923 NN_PUT_lab_TS1-scwrl costs 1298.6 real_cost = 546.397 MetaTasser_TS5-scwrl costs 441.838 real_cost = 388.894 MetaTasser_TS4-scwrl costs 424.926 real_cost = 370.766 MetaTasser_TS3-scwrl costs 448.834 real_cost = 392.597 MetaTasser_TS2-scwrl costs 416.653 real_cost = 373.001 MetaTasser_TS1-scwrl costs 433.878 real_cost = 382.37 Ma-OPUS-server_TS5-scwrl costs 321.795 real_cost = 367.692 Ma-OPUS-server_TS4-scwrl costs 334.086 real_cost = 341.703 Ma-OPUS-server_TS3-scwrl costs 323.537 real_cost = 335.314 Ma-OPUS-server_TS2-scwrl costs 386.131 real_cost = 397.932 Ma-OPUS-server_TS1-scwrl costs 396.54 real_cost = 383.722 Ma-OPUS-server2_TS5-scwrl costs 340.469 real_cost = 349.256 Ma-OPUS-server2_TS4-scwrl costs 349.632 real_cost = 369.926 Ma-OPUS-server2_TS3-scwrl costs 342.331 real_cost = 356.634 Ma-OPUS-server2_TS2-scwrl costs 386.131 real_cost = 397.932 Ma-OPUS-server2_TS1-scwrl costs 407.745 real_cost = 393.897 LOOPP_TS5-scwrl costs 966.795 real_cost = 482.569 LOOPP_TS4-scwrl costs 1296.05 real_cost = 553.348 LOOPP_TS3-scwrl costs 1506.15 real_cost = 588.42 LOOPP_TS2-scwrl costs 1511.36 real_cost = 620.37 LOOPP_TS1-scwrl costs 1298.6 real_cost = 546.397 Huber-Torda-Server_TS5-scwrl costs 8492.12 real_cost = 637.325 Huber-Torda-Server_TS4-scwrl costs 6389.01 real_cost = 635.583 Huber-Torda-Server_TS3-scwrl costs 49546.8 real_cost = 634.328 Huber-Torda-Server_TS2-scwrl costs 32042.5 real_cost = 615.789 Huber-Torda-Server_TS1-scwrl costs 21181.8 real_cost = 640.787 HHpred3_TS1-scwrl costs 372.629 real_cost = 395.664 HHpred2_TS1-scwrl costs 372.629 real_cost = 395.664 HHpred1_TS1-scwrl costs 378.012 real_cost = 394.585 GeneSilicoMetaServer_TS5-scwrl costs 917.437 real_cost = 486.019 GeneSilicoMetaServer_TS4-scwrl costs 1084.19 real_cost = 523.185 GeneSilicoMetaServer_TS3-scwrl costs 888.678 real_cost = 503.603 GeneSilicoMetaServer_TS2-scwrl costs 867.798 real_cost = 507.412 GeneSilicoMetaServer_TS1-scwrl costs 978.131 real_cost = 514.298 Frankenstein_TS5-scwrl costs 374.795 real_cost = 395.802 Frankenstein_TS4-scwrl costs 357.825 real_cost = 361.907 Frankenstein_TS3-scwrl costs 325.861 real_cost = 338.112 Frankenstein_TS2-scwrl costs 345.545 real_cost = 387.889 Frankenstein_TS1-scwrl costs 320.171 real_cost = 381.467 FUNCTION_TS5-scwrl costs 382.544 real_cost = 398.906 FUNCTION_TS4-scwrl costs 533.08 real_cost = 382.104 FUNCTION_TS3-scwrl costs 379.713 real_cost = 369.48 FUNCTION_TS2-scwrl costs 383.82 real_cost = 397.171 FUNCTION_TS1-scwrl costs 367.424 real_cost = 391.603 FUGUE_AL5-scwrl costs 5903.67 real_cost = 759.622 FUGUE_AL4-scwrl costs 279819 real_cost = 654.337 FUGUE_AL3-scwrl costs 68245.8 real_cost = 579.023 FUGUE_AL2-scwrl costs 87896.3 real_cost = 626.549 FUGUE_AL1-scwrl costs 46487.6 real_cost = 716.365 FUGMOD_TS5-scwrl costs 1827.48 real_cost = 664.53 FUGMOD_TS4-scwrl costs 349.124 real_cost = 406.849 FUGMOD_TS3-scwrl costs 324.92 real_cost = 339.444 FUGMOD_TS2-scwrl costs 331.865 real_cost = 389.76 FUGMOD_TS1-scwrl costs 1116.69 real_cost = 530.016 FPSOLVER-SERVER_TS5-scwrl costs 353.904 real_cost = 404.56 FPSOLVER-SERVER_TS4-scwrl costs 360.444 real_cost = 423.696 FPSOLVER-SERVER_TS3-scwrl costs 354.695 real_cost = 421.495 FPSOLVER-SERVER_TS2-scwrl costs 360.967 real_cost = 425.465 FPSOLVER-SERVER_TS1-scwrl costs 357.416 real_cost = 402.133 FORTE2_AL5-scwrl costs 106100 real_cost = 635.725 FORTE2_AL4-scwrl costs 51056.4 real_cost = 656.287 FORTE2_AL3-scwrl costs 64443 real_cost = 681.011 FORTE2_AL2-scwrl costs 101866 real_cost = 651.044 FORTE2_AL1-scwrl costs 33804.7 real_cost = 713.234 FORTE1_AL5-scwrl costs 106100 real_cost = 635.725 FORTE1_AL4-scwrl costs 51056.4 real_cost = 656.287 FORTE1_AL3-scwrl costs 64443 real_cost = 681.011 FORTE1_AL2-scwrl costs 101866 real_cost = 651.044 FORTE1_AL1-scwrl costs 33804.7 real_cost = 713.234 FOLDpro_TS5-scwrl costs 346.443 real_cost = 378.58 FOLDpro_TS4-scwrl costs 387.458 real_cost = 380.614 FOLDpro_TS3-scwrl costs 379.59 real_cost = 393.412 FOLDpro_TS2-scwrl costs 394.753 real_cost = 381.952 FOLDpro_TS1-scwrl costs 358.687 real_cost = 397.644 FAMS_TS5-scwrl costs 664.809 real_cost = 441.951 FAMS_TS4-scwrl costs 1084.58 real_cost = 528.101 FAMS_TS3-scwrl costs 1079.99 real_cost = 530.355 FAMS_TS2-scwrl costs 1086.41 real_cost = 530.565 FAMS_TS1-scwrl costs 375.222 real_cost = 385.701 FAMSD_TS5-scwrl costs 478.019 real_cost = 386.274 FAMSD_TS4-scwrl costs 1082.49 real_cost = 535.945 FAMSD_TS3-scwrl costs 1065.38 real_cost = 533.916 FAMSD_TS2-scwrl costs 1021.88 real_cost = 515.994 FAMSD_TS1-scwrl costs 342.058 real_cost = 385.845 Distill_TS5-scwrl costs 3336.79 real_cost = 716.055 Distill_TS4-scwrl costs 3342.47 real_cost = 724.142 Distill_TS3-scwrl costs 3342.59 real_cost = 722.973 Distill_TS2-scwrl costs 3338.4 real_cost = 726.345 Distill_TS1-scwrl costs 3339.49 real_cost = 724.591 CaspIta-FOX_TS5-scwrl costs 686.85 real_cost = 455.967 CaspIta-FOX_TS4-scwrl costs 701.886 real_cost = 471.132 CaspIta-FOX_TS3-scwrl costs 1047.18 real_cost = 494.17 CaspIta-FOX_TS2-scwrl costs 1274.63 real_cost = 579.253 CaspIta-FOX_TS1-scwrl costs 1267.9 real_cost = 563.353 CPHmodels_TS1-scwrl costs 1439.82 real_cost = 590.64 CIRCLE_TS5-scwrl costs 1086.41 real_cost = 530.565 CIRCLE_TS4-scwrl costs 1084.58 real_cost = 528.101 CIRCLE_TS3-scwrl costs 1079.99 real_cost = 530.355 CIRCLE_TS2-scwrl costs 1082.09 real_cost = 537.487 CIRCLE_TS1-scwrl costs 664.809 real_cost = 441.951 Bilab-ENABLE_TS5-scwrl costs 374.213 real_cost = 383.618 Bilab-ENABLE_TS4-scwrl costs 323.022 real_cost = 383.638 Bilab-ENABLE_TS3-scwrl costs 315.78 real_cost = 368.512 Bilab-ENABLE_TS2-scwrl costs 337.42 real_cost = 395.816 Bilab-ENABLE_TS1-scwrl costs 335.251 real_cost = 412.447 BayesHH_TS1-scwrl costs 491.161 real_cost = 402.879 ABIpro_TS5-scwrl costs 380.6 real_cost = 364.218 ABIpro_TS4-scwrl costs 363.986 real_cost = 360.242 ABIpro_TS3-scwrl costs 396.691 real_cost = 362.198 ABIpro_TS2-scwrl costs 370.376 real_cost = 354.675 ABIpro_TS1-scwrl costs 371.895 real_cost = 380.588 3Dpro_TS5-scwrl costs 379.59 real_cost = 393.412 3Dpro_TS4-scwrl costs 351.894 real_cost = 387.856 3Dpro_TS3-scwrl costs 332.743 real_cost = 382.492 3Dpro_TS2-scwrl costs 363.672 real_cost = 392.407 3Dpro_TS1-scwrl costs 373.097 real_cost = 399.599 3D-JIGSAW_TS3-scwrl costs 2095.01 real_cost = 726.002 3D-JIGSAW_TS2-scwrl costs 1378.28 real_cost = 572.11 3D-JIGSAW_TS1-scwrl costs 1402.5 real_cost = 570.588 3D-JIGSAW_RECOM_TS5-scwrl costs 1379.14 real_cost = 566.873 3D-JIGSAW_RECOM_TS4-scwrl costs 2082.05 real_cost = 728.733 3D-JIGSAW_RECOM_TS3-scwrl costs 2097.01 real_cost = 722.449 3D-JIGSAW_RECOM_TS2-scwrl costs 2097.01 real_cost = 722.449 3D-JIGSAW_RECOM_TS1-scwrl costs 2084.24 real_cost = 723.722 3D-JIGSAW_POPULUS_TS5-scwrl costs 1356.06 real_cost = 568.644 3D-JIGSAW_POPULUS_TS4-scwrl costs 1358.83 real_cost = 558.487 3D-JIGSAW_POPULUS_TS3-scwrl costs 1357.98 real_cost = 563.732 3D-JIGSAW_POPULUS_TS2-scwrl costs 1355.87 real_cost = 557.68 3D-JIGSAW_POPULUS_TS1-scwrl costs 1356.89 real_cost = 564.6 chimera-4-1.pdb.gz costs 315.48 real_cost = 389.075 T0386.try9-opt2.repack-nonPC.pdb.gz costs 264.334 real_cost = 378.307 T0386.try9-opt2.pdb.gz costs 261.007 real_cost = 377.878 T0386.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 277.518 real_cost = 379.117 T0386.try9-opt2.gromacs0.pdb.gz costs 276.14 real_cost = 380.226 T0386.try9-opt1.pdb.gz costs 267.19 real_cost = 376.856 T0386.try9-opt1-scwrl.pdb.gz costs 276.081 real_cost = 375.077 T0386.try8-opt2.repack-nonPC.pdb.gz costs 279.747 real_cost = 386.323 T0386.try8-opt2.pdb.gz costs 279.654 real_cost = 387.504 T0386.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 293.293 real_cost = 387.371 T0386.try8-opt2.gromacs0.pdb.gz costs 292.233 real_cost = 386.553 T0386.try8-opt1.pdb.gz costs 290.03 real_cost = 387.683 T0386.try8-opt1-scwrl.pdb.gz costs 291.457 real_cost = 387.394 T0386.try7-opt2.repack-nonPC.pdb.gz costs 268.675 real_cost = 384.875 T0386.try7-opt2.pdb.gz costs 266.072 real_cost = 383.192 T0386.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 279.93 real_cost = 385.609 T0386.try7-opt2.gromacs0.pdb.gz costs 278.131 real_cost = 384.049 T0386.try7-opt1.pdb.gz costs 269.834 real_cost = 384.021 T0386.try7-opt1-scwrl.pdb.gz costs 274.696 real_cost = 383.614 T0386.try6-opt2.repack-nonPC.pdb.gz costs 258.724 real_cost = 381.96 T0386.try6-opt2.pdb.gz costs 256.437 real_cost = 381.882 T0386.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 272.106 real_cost = 383.883 T0386.try6-opt2.gromacs0.pdb.gz costs 270.099 real_cost = 381.269 T0386.try6-opt1.pdb.gz costs 260.99 real_cost = 383.077 T0386.try6-opt1-scwrl.pdb.gz costs 268.518 real_cost = 382.429 T0386.try5-opt2.repack-nonPC.pdb.gz costs 294.6 real_cost = 366.008 T0386.try5-opt2.pdb.gz costs 293.592 real_cost = 364.001 T0386.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 300.545 real_cost = 369.579 T0386.try5-opt2.gromacs0.pdb.gz costs 300.095 real_cost = 366.805 T0386.try5-opt1.pdb.gz costs 300.589 real_cost = 363.594 T0386.try5-opt1-scwrl.pdb.gz costs 303.02 real_cost = 363.495 T0386.try4-opt2.repack-nonPC.pdb.gz costs 267.583 real_cost = 377.635 T0386.try4-opt2.pdb.gz costs 266.244 real_cost = 375.218 T0386.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 281.642 real_cost = 378.085 T0386.try4-opt2.gromacs0.pdb.gz costs 280.96 real_cost = 375.919 T0386.try4-opt1.pdb.gz costs 269.839 real_cost = 375.408 T0386.try4-opt1-scwrl.pdb.gz costs 274.852 real_cost = 375.313 T0386.try3-opt2.repack-nonPC.pdb.gz costs 274.967 real_cost = 382.726 T0386.try3-opt2.pdb.gz costs 273.759 real_cost = 380.646 T0386.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 286.387 real_cost = 377.583 T0386.try3-opt2.gromacs0.pdb.gz costs 285.082 real_cost = 378.697 T0386.try3-opt1.pdb.gz costs 280.696 real_cost = 380.569 T0386.try3-opt1-scwrl.pdb.gz costs 282.241 real_cost = 379.926 T0386.try21-opt2.repack-nonPC.pdb.gz costs 261.808 real_cost = 374.494 T0386.try21-opt2.pdb.gz costs 260.177 real_cost = 375.626 T0386.try21-opt2.gromacs0.repack-nonPC.pdb.gz costs 264.003 real_cost = 370.118 T0386.try21-opt2.gromacs0.pdb.gz costs 274.784 real_cost = 372.577 T0386.try21-opt1.pdb.gz costs 263.542 real_cost = 374.069 T0386.try21-opt1-scwrl.pdb.gz costs 267.021 real_cost = 371.924 T0386.try20-opt2.repack-nonPC.pdb.gz costs 256.245 real_cost = 375.039 T0386.try20-opt2.pdb.gz costs 253.421 real_cost = 373.305 T0386.try20-opt2.gromacs0.repack-nonPC.pdb.gz costs 273.183 real_cost = 369.944 T0386.try20-opt2.gromacs0.pdb.gz costs 271.51 real_cost = 370.192 T0386.try20-opt1.pdb.gz costs 255.932 real_cost = 373.25 T0386.try20-opt1-scwrl.pdb.gz costs 260.909 real_cost = 373.171 T0386.try2-opt2.repack-nonPC.pdb.gz costs 284.861 real_cost = 388.247 T0386.try2-opt2.pdb.gz costs 283.876 real_cost = 383.405 T0386.try2-opt2.gromacs0.repack-nonPC.pdb.gz costs 301.739 real_cost = 385.385 T0386.try2-opt2.gromacs0.pdb.gz costs 301.04 real_cost = 382.291 T0386.try2-opt1.pdb.gz costs 296.144 real_cost = 378.89 T0386.try2-opt1-scwrl.pdb.gz costs 298.972 real_cost = 381.163 T0386.try19-opt2.repack-nonPC.pdb.gz costs 275.355 real_cost = 358.414 T0386.try19-opt2.pdb.gz costs 273.755 real_cost = 361.111 T0386.try19-opt2.gromacs0.repack-nonPC.pdb.gz costs 287.156 real_cost = 354.724 T0386.try19-opt2.gromacs0.pdb.gz costs 285.776 real_cost = 356.909 T0386.try19-opt1.pdb.gz costs 275.801 real_cost = 360.317 T0386.try19-opt1-scwrl.pdb.gz costs 279.279 real_cost = 357.025 T0386.try18-opt2.pdb.gz costs 261.751 real_cost = 371.214 T0386.try18-opt2.gromacs0.pdb.gz costs 276.941 real_cost = 371.973 T0386.try18-opt1.pdb.gz costs 262.999 real_cost = 370.881 T0386.try18-opt1-scwrl.pdb.gz costs 264.599 real_cost = 369.662 T0386.try17-opt2.repack-nonPC.pdb.gz costs 262.406 real_cost = 376.397 T0386.try17-opt2.pdb.gz costs 261.246 real_cost = 376.281 T0386.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 273.442 real_cost = 376.024 T0386.try17-opt2.gromacs0.pdb.gz costs 273.756 real_cost = 375.784 T0386.try17-opt1.pdb.gz costs 262.414 real_cost = 376.446 T0386.try17-opt1-scwrl.pdb.gz costs 266.827 real_cost = 376.502 T0386.try16-opt2.repack-nonPC.pdb.gz costs 273.42 real_cost = 356.574 T0386.try16-opt2.pdb.gz costs 272.267 real_cost = 359.408 T0386.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 285.738 real_cost = 357.569 T0386.try16-opt2.gromacs0.pdb.gz costs 284.885 real_cost = 357.374 T0386.try16-opt1.pdb.gz costs 275.878 real_cost = 360.362 T0386.try16-opt1-scwrl.pdb.gz costs 279.945 real_cost = 357.139 T0386.try15-opt2.repack-nonPC.pdb.gz costs 266.004 real_cost = 368.16 T0386.try15-opt2.pdb.gz costs 264.404 real_cost = 369.554 T0386.try15-opt2.gromacs0.repack-nonPC.pdb.gz costs 280.497 real_cost = 367.818 T0386.try15-opt2.gromacs0.pdb.gz costs 279.016 real_cost = 369.035 T0386.try15-opt1.pdb.gz costs 267.476 real_cost = 371.545 T0386.try15-opt1-scwrl.pdb.gz costs 269.783 real_cost = 368.277 T0386.try14-opt2.repack-nonPC.pdb.gz costs 263.193 real_cost = 375.436 T0386.try14-opt2.pdb.gz costs 261.811 real_cost = 375.666 T0386.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 274.218 real_cost = 375.409 T0386.try14-opt2.gromacs0.pdb.gz costs 273.623 real_cost = 375.488 T0386.try14-opt1.pdb.gz costs 265.357 real_cost = 376.844 T0386.try14-opt1-scwrl.pdb.gz costs 269.13 real_cost = 374.823 T0386.try13-opt2.repack-nonPC.pdb.gz costs 265.171 real_cost = 377.275 T0386.try13-opt2.pdb.gz costs 264.373 real_cost = 377.125 T0386.try13-opt2.gromacs0.repack-nonPC.pdb.gz costs 279.157 real_cost = 379.763 T0386.try13-opt2.gromacs0.pdb.gz costs 278.583 real_cost = 379.171 T0386.try13-opt1.pdb.gz costs 266.499 real_cost = 377.074 T0386.try13-opt1-scwrl.pdb.gz costs 272.828 real_cost = 374.8 T0386.try12-opt2.repack-nonPC.pdb.gz costs 259.23 real_cost = 381.73 T0386.try12-opt2.pdb.gz costs 254.921 real_cost = 381.471 T0386.try12-opt2.gromacs0.repack-nonPC.pdb.gz costs 271.102 real_cost = 381.328 T0386.try12-opt2.gromacs0.pdb.gz costs 268.354 real_cost = 380.967 T0386.try12-opt1.pdb.gz costs 256.024 real_cost = 381.881 T0386.try12-opt1-scwrl.pdb.gz costs 263.65 real_cost = 380.241 T0386.try11-opt2.repack-nonPC.pdb.gz costs 261.844 real_cost = 373.447 T0386.try11-opt2.pdb.gz costs 259.112 real_cost = 372.967 T0386.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 276.076 real_cost = 376.891 T0386.try11-opt2.gromacs0.pdb.gz costs 273.103 real_cost = 376.47 T0386.try11-opt1.pdb.gz costs 265.157 real_cost = 375.064 T0386.try11-opt1-scwrl.pdb.gz costs 271.179 real_cost = 374.982 T0386.try10-opt2.repack-nonPC.pdb.gz costs 263.714 real_cost = 377.662 T0386.try10-opt2.pdb.gz costs 261.601 real_cost = 378.851 T0386.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 277.288 real_cost = 379.602 T0386.try10-opt2.gromacs0.pdb.gz costs 275.379 real_cost = 379.42 T0386.try10-opt1.pdb.gz costs 263.625 real_cost = 379.804 T0386.try10-opt1-scwrl.pdb.gz costs 271.95 real_cost = 378.417 T0386.try1-opt2.repack-nonPC.pdb.gz costs 276.665 real_cost = 363.067 T0386.try1-opt2.pdb.gz costs 274.002 real_cost = 363.23 T0386.try1-opt2.gromacs0.repack-nonPC.pdb.gz costs 290.059 real_cost = 362.831 T0386.try1-opt2.gromacs0.pdb.gz costs 289.786 real_cost = 364.116 T0386.try1-opt1.pdb.gz costs 285.239 real_cost = 364.317 T0386.try1-opt1-scwrl.pdb.gz costs 283.579 real_cost = 363.869 T0386.chimera7.pdb.gz costs 271.324 real_cost = 374.571 T0386.chimera6.pdb.gz costs 332.635 real_cost = 377.539 T0386.chimera5.pdb.gz costs 309.345 real_cost = 385.378 T0386.chimera4.pdb.gz costs 335.941 real_cost = 380.743 T0386.chimera3.pdb.gz costs 285.551 real_cost = 387.667 T0386.chimera2.pdb.gz costs 271.398 real_cost = 382.94 T0386.chimera.pdb.gz costs 328.61 real_cost = 383.098 ../model5.ts-submitted costs 273.356 real_cost = 376.003 ../model4.ts-submitted costs 253.4 real_cost = 371.471 ../model3.ts-submitted costs 264.44 real_cost = 377.256 ../model2.ts-submitted costs 255.07 real_cost = 381.306 ../model1.ts-submitted costs 261.784 real_cost = 378.8 align5 costs 2352.48 real_cost = 714.587 align4 costs 2616.65 real_cost = 653.2 align3 costs 2057.32 real_cost = 634.803 align2 costs 2382.43 real_cost = 589.313 align1 costs 2191.91 real_cost = 600.743 T0386.try1-opt2.pdb costs 274.002 real_cost = 363.23 model5-scwrl costs 273.356 real_cost = 376.003 model4-scwrl costs 253.4 real_cost = 371.471 model3-scwrl costs 264.44 real_cost = 377.256 model2-scwrl costs 255.07 real_cost = 381.306 model1-scwrl costs 261.784 real_cost = 378.8 T0386 costs 540.859 real_cost = -895 # command:CPU_time= 1069.12 sec, elapsed time= 1320.88 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0386'