# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 1.50e-25 2f6sA 201 2.28e-24 1d5rA 324 7.67e-04 1d5rA b.7.1.1,c.45.1.1 23181,32697 1jotA 133 1.07e+00 1jotA 1gadO 330 3.35e+00 1dssG c.2.1.3,d.81.1.1 29950,39865 1e2aA 105 3.92e+00 1e2aA a.7.2.1 16322 1fjgJ 105 4.17e+00 1fjfJ d.58.15.1 39330 1af6A 421 4.28e+00 2mprA f.4.3.2 43772 1jacA 133 4.74e+00 1jotA 2e2aA 105 4.86e+00 a.7.2.1 88499 2b3oA 532 5.17e+00 2g7jA 124 5.67e+00 1bjwA 382 5.76e+00 1bjwA c.67.1.1 34349 1ugxA 133 6.26e+00 1qb0A 211 6.82e+00 1c25 c.46.1.1 32699 1ku8A 133 7.83e+00 1jacC 133 8.00e+00 1jotA 1rm4A 337 8.02e+00 c.2.1.3,d.81.1.1 105000,105001 1xxqA 161 8.44e+00 1senA 164 8.56e+00 c.47.1.1 105465 1m26A 133 9.23e+00 1b5pA 385 9.80e+00 c.67.1.1 90403 1ymkA 175 1.02e+01 1mal 421 1.03e+01 2mprA f.4.3.2 43784 2a2kA 175 1.08e+01 1gtdA 85 1.23e+01 d.284.1.1 76344 1a5r 103 1.23e+01 1a5r d.15.1.1 37597 1gakA 141 1.24e+01 1gakA a.19.1.1 16415 2ftxB 64 1.27e+01 1q77A 138 1.28e+01 c.26.2.4 96023 1iuqA 367 1.44e+01 c.112.1.1 90703 1kgyA 181 1.45e+01 b.18.1.4 72449 1m5yA 408 1.60e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1shwB 181 1.62e+01 b.18.1.4 105563 1iarB 207 1.72e+01 1iarB b.1.2.1,b.1.2.1 22037,22038 1k30A 368 1.91e+01 c.112.1.1 68067 1ug8A 87 1.91e+01 d.68.7.1 107825 1h7sA 365 1.93e+01 d.14.1.3,d.122.1.2 65705,65706 1r7jA 95 2.00e+01 a.4.5.49 104836 1sxjE 354 2.04e+01 a.80.1.1,c.37.1.20 106089,106090 2avpA 70 2.06e+01 1hlrA 907 2.12e+01 1vlbA 907 2.12e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2mprA 421 2.13e+01 2mprA f.4.3.2 43788 2d2mB 142 2.28e+01 1fnlA 175 2.63e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1u20A 212 2.70e+01 1lvhA 221 2.73e+01 c.108.1.6 74282 1r0dA 206 2.81e+01 a.216.1.1 104715 1ef1C 90 2.94e+01 1ef1C a.137.5.1 19642 1hgxA 183 2.96e+01 1tc1A c.61.1.1 34027 1cfzA 162 3.04e+01 1cfzA c.56.1.1 33754 2bgxA 261 3.20e+01 2h3lA 103 3.22e+01 1zx0A 236 3.32e+01 1o08A 221 3.34e+01 c.108.1.6 86525 2tmdA 729 3.42e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1djqA 729 3.48e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1jv2B 692 3.51e+01 b.1.15.1,c.62.1.1,d.200.1.1,g.3.11.6,g.3.11.6 67338,67339,67340,67341,67342 2d2mA 140 3.65e+01 2bh7A 261 3.66e+01 2ffuA 501 3.70e+01 1mkp 144 3.72e+01 1vhrA c.45.1.1 32654 1cr1A 296 3.76e+01 1cr1A c.37.1.11 32286 1rypG 244 3.76e+01 d.153.1.4 41938 1sq5A 308 3.76e+01 c.37.1.6 105882 1o94A 729 3.81e+01 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2aaoA 166 3.84e+01 1kzuB 41 3.95e+01 1kzuB f.3.1.1 43728 1nkzB 41 3.95e+01 f.3.1.1 80612 1wteA 272 4.14e+01 1wdtA 665 4.15e+01 1na3A 91 4.18e+01 k.38.1.1 85481 1djnA 729 4.50e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 2cybA 323 4.54e+01 1nukA 183 4.81e+01 1nukA b.18.1.4 23721 1bmbA 123 4.87e+01 1griA d.93.1.1 40466 1hfeL 421 4.97e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1rpl 251 4.99e+01 1bpyA a.60.12.1,d.218.1.2 75933,75934 2bm8A 236 5.18e+01 2dh4A 340 5.18e+01 1x1rA 178 5.19e+01 1guxB 152 5.23e+01 1guxB a.74.1.3 18389 2shpA 525 5.24e+01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2d27A 149 5.27e+01 2phlA 397 5.36e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1f28A 297 5.45e+01 1bkpA d.117.1.1 59608 1avoA 60 5.52e+01 1avoA a.24.8.1 16619 1eo9A 209 5.58e+01 3pchA b.3.6.1 22731 1z4eA 153 5.59e+01 1jwiA 131 5.66e+01 d.169.1.1 67383 1r2rA 248 5.67e+01 c.1.1.1 96875 2ajrA 331 5.75e+01 1xiyA 182 6.04e+01 1smzA 28 6.16e+01 j.6.1.1 98926 1bpb 248 6.16e+01 1bpyA a.60.12.1,d.218.1.2 75811,75812 1e53A 59 6.26e+01 1e53A g.49.1.2 45356 1zczA 464 6.27e+01 1pz1A 333 6.31e+01 c.1.7.1 95390 2hipA 72 6.52e+01 g.35.1.1 44991 1esmA 316 6.52e+01 1esmA c.37.1.6 31953 1qadA 111 6.54e+01 1qadA d.93.1.1 40498 1nom 248 6.93e+01 1bpyA a.60.12.1,d.218.1.2 75929,75930 1i1rB 181 6.98e+01 1i1rB a.26.1.1 61548 2d0sA 79 6.99e+01 1u0mA 382 7.05e+01 c.95.1.2,c.95.1.2 107557,107558 1nciA 110 7.10e+01 1edhA b.1.6.1 22191 1gpjA 404 7.12e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1g8jA 825 7.18e+01 1g8jA b.52.2.2,c.81.1.1 26924,35332 2bc4A 211 7.21e+01 1zac 90 7.22e+01 1ncx a.39.1.5 17236 1cr0A 296 7.29e+01 1cr1A c.37.1.11 32287 1g8kA 825 7.70e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1rck 106 7.78e+01 9rnt d.1.1.4 36053 1fus 106 7.81e+01 9rnt d.1.1.4 36050 1u0jA 267 7.84e+01 c.37.1.20 107546 1h96A 182 7.89e+01 2fha a.25.1.1 60811 1ukfA 188 7.96e+01 d.3.1.10 99488 1v37A 177 8.02e+01 1nbmG 272 8.02e+01 1e1qG c.49.2.1 33161 1iv8A 720 8.03e+01 b.71.1.1,c.1.8.1 76842,76843 2bzlA 325 8.05e+01 1wjxA 122 8.18e+01 2g38A 99 8.24e+01 1c4xA 285 8.42e+01 1c4xA c.69.1.10 34684 1xo1A 291 8.45e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1fvrA 327 8.48e+01 d.144.1.7 60047 1lb3A 182 8.51e+01 a.25.1.1 77873 1r0rI 51 8.53e+01 g.68.1.1 96736 2bikB 313 8.65e+01 1bmfG 272 8.79e+01 1e1qG c.49.2.1 33160 1y1xA 191 8.94e+01