# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 1.44e-19 1d5rA 324 2.09e-03 1d5rA b.7.1.1,c.45.1.1 23181,32697 1v7rA 186 1.71e-01 c.51.4.1 100482 1gvhA 396 1.01e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1vl1A 232 1.36e+00 c.124.1.1 108707 2f2gA 221 1.45e+00 2gupA 292 1.46e+00 1knyA 253 1.46e+00 1knyA a.24.16.1,d.218.1.1 75896,75897 1lddA 74 1.68e+00 a.4.5.34 73841 1zroA 602 2.20e+00 1t92A 116 2.28e+00 1pi1A 185 2.30e+00 a.29.7.1 94699 1u0mA 382 2.61e+00 c.95.1.2,c.95.1.2 107557,107558 1zk8A 183 2.65e+00 1vhrA 184 2.71e+00 1vhrA c.45.1.1 32651 2bsjA 133 2.91e+00 1qusA 322 3.85e+00 1ltm d.2.1.6 36991 1u24A 337 4.07e+00 2bzlA 325 4.27e+00 2c3gA 98 5.40e+00 2bhoA 130 6.50e+00 2b49A 287 6.83e+00 2gs8A 317 8.08e+00 2feaA 236 8.36e+00 1sjiA 350 8.57e+00 1su8A 636 8.87e+00 e.26.1.2 98999 1tuoA 464 8.87e+00 1lj9A 144 9.20e+00 a.4.5.28 78035 2pgd 482 9.54e+00 2pgd a.100.1.1,c.2.1.6 18778,30190 1z77A 200 1.10e+01 1bkrA 109 1.14e+01 1bkrA a.40.1.1 17394 1ldjA 760 1.20e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1r2rA 248 1.24e+01 c.1.1.1 96875 1t6cA 315 1.26e+01 c.55.1.8,c.55.1.8 106558,106559 1r6dA 337 1.28e+01 c.2.1.2 97148 1f0lA 535 1.38e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1moq 368 1.39e+01 1moq c.80.1.1 35302 1g8lA 411 1.39e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2cwcA 303 1.42e+01 1ovnA 248 1.45e+01 a.71.1.1,c.47.1.7 93602,93603 1lnwA 147 1.47e+01 a.4.5.28 78104 1uqtA 482 1.47e+01 c.87.1.6 99794 2fh7A 595 1.49e+01 1h4vB 421 1.49e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2cdqA 510 1.58e+01 1pjr 724 1.64e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1g4wR 383 1.64e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 2g7uA 257 1.65e+01 1zthA 258 1.71e+01 1q79A 514 1.77e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1q44A 326 1.90e+01 c.37.1.5 95779 1qc7A 101 1.92e+01 1qc7A a.118.14.1 18456 2c46A 241 2.02e+01 1ig8A 486 2.04e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1ihoA 283 2.10e+01 1ihoA c.26.1.4 62390 1qbjA 81 2.22e+01 1qbjA a.4.5.19 16155 1wdcC 156 2.23e+01 1wdcC a.39.1.5 17317 1nnhA 294 2.29e+01 d.104.1.1 92005 2fiyA 309 2.29e+01 1vggA 161 2.33e+01 2bzgA 232 2.36e+01 1eg3A 261 2.42e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1a5t 334 2.42e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1fcdA 401 2.43e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1zboA 210 2.50e+01 2aaoA 166 2.58e+01 1r8gA 372 2.59e+01 d.128.1.3 104845 1tkeA 224 2.61e+01 2ahrA 259 2.61e+01 1uxtA 501 2.63e+01 c.82.1.1 108125 1ucrA 78 2.71e+01 a.4.5.45 99188 2abk 211 2.76e+01 2abk a.96.1.1 18743 1fs1B 141 2.77e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1fpzA 212 2.85e+01 1fpzA c.45.1.1 59976 1oheA 348 2.87e+01 c.45.1.1,c.45.1.1 87013,87014 1xnfA 275 2.88e+01 1k7kA 221 2.90e+01 c.51.4.1 72104 2fswA 107 2.91e+01 1na3A 91 2.94e+01 k.38.1.1 85481 1vqrA 297 3.00e+01 1pea 385 3.02e+01 1pea c.93.1.1 35662 1xfiA 367 3.06e+01 e.50.1.1 109584 1in6A 334 3.11e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1zelA 298 3.14e+01 1d2nA 272 3.15e+01 1d2nA c.37.1.20 32428 2g7jA 124 3.33e+01 1zx0A 236 3.38e+01 1hr6A 475 3.40e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1j1iA 296 3.44e+01 c.69.1.10 83977 1rtwA 220 3.53e+01 a.132.1.3 97823 1lmzA 187 3.54e+01 a.96.1.4 74037 1eiwA 111 3.59e+01 1eiwA c.23.3.1 31130 1gpjA 404 3.60e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1z1dA 103 3.65e+01 1q77A 138 3.69e+01 c.26.2.4 96023 2f6eA 127 3.80e+01 1scfA 273 3.84e+01 1exzA a.26.1.2 16873 1guxB 152 3.86e+01 1guxB a.74.1.3 18389 1zatA 250 3.90e+01 2a7mA 250 4.01e+01 2guhA 214 4.06e+01 1q6hA 224 4.09e+01 d.26.1.1 95975 1g3mA 294 4.09e+01 c.37.1.5 83268 2be4A 272 4.14e+01 1qv1A 195 4.19e+01 a.39.1.5 96347 1yn9A 169 4.20e+01 1jhfA 202 4.22e+01 a.4.5.2,b.87.1.1 63057,63058 2cw8A 537 4.25e+01 1pu6A 218 4.54e+01 a.96.1.5 95123 2fhzA 109 4.59e+01 2ffuA 501 4.60e+01 1hcnB 145 4.64e+01 1hcnB g.17.1.4 44810 1f28A 297 4.68e+01 1bkpA d.117.1.1 59608 1h3nA 878 4.68e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2bh0A 208 4.71e+01 2cbiA 594 4.74e+01 1nb8A 353 4.75e+01 d.3.1.9 80385 2ezh 75 4.75e+01 2ezh a.4.1.2 16029 1olrA 224 4.77e+01 b.29.1.11 93330 1p0hA 318 4.78e+01 d.108.1.1 93866 1w53A 84 4.84e+01 a.186.1.2 109175 1fiuA 286 4.86e+01 1fiuA c.52.1.10 33317 1xqaA 113 4.89e+01 2mprA 421 4.98e+01 2mprA f.4.3.2 43788 4eugA 229 4.99e+01 3eugA c.18.1.1 31019 2f3yA 148 5.00e+01 1gt1A 159 5.01e+01 b.60.1.1 90515 1tx9A 151 5.03e+01 1vcsA 102 5.15e+01 2gl5A 410 5.20e+01 1w9hA 427 5.20e+01 2f02A 323 5.25e+01 2f06A 144 5.29e+01 1lcyA 325 5.34e+01 b.36.1.4,b.47.1.1 73834,73835 1vi0A 206 5.37e+01 a.4.1.9,a.121.1.1 100720,100721 1pq1A 196 5.38e+01 f.1.4.1 94986 2eu8A 216 5.39e+01 1b5pA 385 5.59e+01 c.67.1.1 90403 1oc2A 348 5.65e+01 c.2.1.2 92765 1senA 164 5.69e+01 c.47.1.1 105465 1hfc 169 5.69e+01 1hfc d.92.1.11 40335 1txdA 385 5.70e+01 a.87.1.1,b.55.1.1 107422,107423 1w7bA 339 5.71e+01 1ji6A 589 5.76e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1lw7A 365 5.79e+01 c.26.1.3,c.37.1.1 74295,74296 1z2lA 423 5.80e+01 1on3A 523 5.90e+01 c.14.1.4,c.14.1.4 87107,87108 1jmsA 381 5.94e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1np6A 174 5.96e+01 c.37.1.10 85954 2b8tA 223 6.04e+01 1xg2B 153 6.06e+01 2c3nA 247 6.08e+01 1nznA 126 6.08e+01 a.118.8.1 92382 1vmeA 410 6.11e+01 c.23.5.1,d.157.1.3 108893,108894 1jigA 146 6.13e+01 a.25.1.1 71685 2c71A 216 6.17e+01 1yvrA 538 6.27e+01 1s4bP 674 6.27e+01 d.92.1.5 105252 1uw4B 248 6.28e+01 a.118.1.14 100072 1m7sA 484 6.29e+01 e.5.1.1 74574 1bn7A 294 6.31e+01 1bn6A c.69.1.8 34677 1cfb 205 6.35e+01 1cfb b.1.2.1,b.1.2.1 21991,21992 1l3eB 101 6.39e+01 g.53.1.1 73536 2b69A 343 6.46e+01 1aquA 297 6.47e+01 1aquA c.37.1.5 31942 1za0A 275 6.49e+01 1oxkB 134 6.61e+01 c.23.1.1 93691 1td6A 306 6.75e+01 1u2mA 143 6.75e+01 f.48.1.1 107612 1vqoB 338 6.79e+01 2b0lA 102 6.79e+01 1c96A 753 6.80e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1bupA 386 6.90e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2d2sA 235 6.94e+01 1a0p 290 7.02e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1jo8A 58 7.09e+01 b.34.2.1 71774 1xkrA 206 7.11e+01 1xzoA 174 7.20e+01 1vr5A 547 7.20e+01 1ii7A 333 7.27e+01 1ii7A d.159.1.4 62415 1vqoL 165 7.40e+01 1ru0A 105 7.53e+01 1vjkA 98 7.57e+01 d.15.3.1 108631 2b3gA 123 7.64e+01 1k78A 149 7.66e+01 a.4.1.5,a.4.1.5 68255,68256 1xn7A 78 7.77e+01 1budA 197 7.77e+01 1atlA d.92.1.9 40328 1y9lA 115 7.80e+01 2fnaA 357 7.81e+01 1w78A 422 7.95e+01 1ggzA 148 8.05e+01 a.39.1.5 70176 2gfoA 396 8.18e+01 5eau 548 8.18e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1nh1A 330 8.20e+01 e.45.1.1 91871 2g7sA 194 8.23e+01 1wwpA 119 8.27e+01 1nmeA 146 8.34e+01 c.17.1.1 85874 2cvjA 180 8.52e+01 1f7uA 607 8.56e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2fpoA 202 8.58e+01 1z8uA 102 8.60e+01 1u0jA 267 8.63e+01 c.37.1.20 107546 1uasA 362 8.65e+01 b.71.1.1,c.1.8.1 88388,88389 1rkbA 173 8.71e+01 2a10A 125 8.72e+01 1vjpA 394 8.76e+01 c.2.1.3,d.81.1.3 100828,100829 1hw5A 210 8.76e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1yoxA 250 8.78e+01 1wqaA 455 8.87e+01 1n1bA 549 8.91e+01 a.102.4.1,a.128.1.3 79799,79800 4tmkA 213 8.96e+01 5tmpA c.37.1.1 31930