# List of top-scoring protein chains for T0386.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kcfA 258 2.49e+00 a.140.2.1,c.55.3.7 68434,68435 2cohA 202 2.53e+00 1x8gA 227 4.96e+00 1x8iA 227 6.37e+00 1x8hA 228 6.39e+00 1i9sA 210 1.09e+01 1i9sA c.45.1.1 62099 1lkxA 697 1.13e+01 c.37.1.9 73981 1e6vA 553 1.20e+01 1mroA a.89.1.1,d.58.31.2 18527,39445 1x3xA 82 1.22e+01 2c46A 241 1.39e+01 1oejA 193 1.44e+01 b.60.1.4 92798 1d5rA 324 1.45e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1txlA 215 1.48e+01 b.60.1.4 107429 1s7dA 216 1.48e+01 b.60.1.4 105348 1qbgA 272 1.56e+01 1d4aA c.23.5.3 31227 1d4aA 273 1.56e+01 1d4aA c.23.5.3 31219 1h69A 273 1.56e+01 c.23.5.3 60665 1sjvA 114 1.74e+01 b.1.1.1 105662 1k2eA 156 1.75e+01 d.113.1.1 72010 1ltdA 506 1.80e+01 1gox c.1.4.1,d.120.1.1 28618,41086 1szfA 511 1.84e+01 c.1.4.1 106153 1szeA 511 1.84e+01 c.1.4.1 106151 1kbiA 511 1.85e+01 c.1.4.1,d.120.1.1 72277,72278 1lcoA 511 1.85e+01 1gox c.1.4.1,d.120.1.1 28624,41088 1hbrA 141 1.89e+01 1abwA a.1.1.2 15392 1nr6A 473 2.18e+01 a.104.1.1 92085 1yvcA 70 2.20e+01 1s3gA 217 2.62e+01 c.37.1.1,g.41.2.1 98433,98434 1nffA 260 2.62e+01 c.2.1.2 80457 1icpA 376 2.64e+01 1oyc c.1.4.1 62270 1ojuA 294 2.77e+01 c.2.1.5,d.162.1.1 103990,103991 1zkjA 359 3.02e+01 1moxA 501 3.21e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 91372,91373,91374,91375 1kmqA 184 3.45e+01 c.37.1.8 84412 1vhxA 150 3.50e+01 c.55.3.8 100712 1g8jB 133 3.57e+01 1g8jB b.33.1.1 24439 2g7cA 255 3.58e+01 1ivoA 622 3.60e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 76845,76846,76847,76848 1nqlA 624 3.60e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 86033,86034,86035,86036 1ie5A 107 3.62e+01 b.1.1.4 62312 2c07A 285 3.64e+01 1yy9A 624 3.65e+01 1cxzA 182 3.71e+01 1ctqA c.37.1.8 32048 1s1cA 183 3.71e+01 c.37.1.8 98340 1lb1B 192 3.86e+01 c.37.1.8 73786 1jrmA 104 3.88e+01 d.206.1.1 67136 1x86B 196 3.91e+01 c.37.1.8 109506 1tx4B 177 4.06e+01 1ctqA c.37.1.8 32045 1xcgB 178 4.07e+01 1uok 558 4.12e+01 1uok b.71.1.1,c.1.8.1 27801,28788 3rp2A 224 4.19e+01 1a7s b.47.1.2 26298 1cc0A 190 4.28e+01 1eesA c.37.1.8 32050 1ow3B 193 4.31e+01 c.37.1.8 87486 1llc 325 4.39e+01 1hyhA c.2.1.5,d.162.1.1 30176,42143 1xiwA 105 4.56e+01 1oltA 457 4.59e+01 c.1.28.2 93334 2cf2E 226 4.62e+01 2cuiA 112 4.63e+01 1kthA 58 4.73e+01 g.8.1.1 68863 1z2cA 193 4.78e+01 2bddA 182 4.79e+01 1q7cA 244 4.92e+01 c.2.1.2 96030 1q7bA 244 4.92e+01 c.2.1.2 96026 1s6cA 183 4.99e+01 a.39.1.5 98594 1s1eA 224 5.09e+01 2visC 282 5.27e+01 1hgeA b.19.1.2 23807 2hmgA 328 5.29e+01 1hgeA b.19.1.2 23828 1yvuA 706 5.40e+01 3ldh 330 5.41e+01 3ldh i.12.1.1 46015 1hxjA 507 5.45e+01 c.1.8.4 76729 1e1eA 512 5.48e+01 1e70M c.1.8.4 28944 1yvdA 169 5.58e+01 1dpfA 180 5.59e+01 1ctqA c.37.1.8 32046 1z0jA 170 5.61e+01 2viuA 328 5.86e+01 1hgeA b.19.1.2 23797 2crpA 150 5.87e+01 2grjA 192 6.00e+01 1v08A 512 6.04e+01 c.1.8.4 108202 1gmvA 143 6.07e+01 b.107.1.1,d.58.38.1 65343,65344 1hgjA 328 6.19e+01 1hgeA b.19.1.2 23801 1h49A 512 6.25e+01 c.1.8.4 83477 1ovnA 248 6.26e+01 a.71.1.1,c.47.1.7 93602,93603 3hmgA 328 6.40e+01 1hgeA b.19.1.2 23825 1go4E 100 6.46e+01 h.1.22.1 70296 2axtD 352 6.51e+01 1tzaA 134 6.69e+01 b.1.23.1 107468 1r6xA 395 6.79e+01 b.122.1.3,c.26.1.5 97167,97168 1i10A 331 6.95e+01 3ldh c.2.1.5,d.162.1.1 61499,61500 1g8kB 133 7.01e+01 1g8jB b.33.1.1 24435 1gmuA 143 7.01e+01 b.107.1.1,d.58.38.1 65335,65336 2aegA 268 7.06e+01 1zxoA 291 7.07e+01 1fchA 368 7.08e+01 1fchA a.118.8.1 19212 1wh3A 87 7.13e+01 1z90A 469 7.19e+01 1sl8A 191 7.60e+01 1uhkA 191 7.78e+01 1vkfA 188 7.83e+01 c.1.29.1 108656 1hyp 80 7.88e+01 1hyp a.52.1.1 17806 1sy6A 204 7.93e+01 b.1.1.4,b.1.1.4 106111,106112 1gmwD 143 7.93e+01 b.107.1.1,d.58.38.1 65353,65354 1umiA 184 8.13e+01 b.18.1.21 99606 2c1xA 456 8.14e+01 1umhA 184 8.19e+01 b.18.1.21 99605 2vitC 282 8.34e+01 1hgeA b.19.1.2 23808 1ha0A 494 8.38e+01 1hgeA b.19.1.2,h.3.1.1 23824,45697 1tkkA 366 8.41e+01 c.1.11.2,d.54.1.1 107089,107090 2d9bA 109 8.45e+01 1q6wA 161 8.56e+01 d.38.1.4 96000 1ya0A 497 8.79e+01 2nef 136 8.91e+01 1efnB d.102.1.1 40704