# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wv2A 265 2.84e+00 1t3yA 141 3.12e+00 1udmA 149 5.16e+00 d.109.1.2 107780 1t2lA 141 5.39e+00 1kcfA 258 5.73e+00 a.140.2.1,c.55.3.7 68434,68435 1vfqA 143 6.04e+00 1ipiA 123 6.08e+00 c.52.1.18 66255 1g8jB 133 9.15e+00 1g8jB b.33.1.1 24439 1ddeA 338 9.59e+00 1dd9A e.13.1.1 43255 2d0sA 79 1.10e+01 1jfaA 374 1.24e+01 a.128.1.5 66622 1c14A 262 1.28e+01 1eny c.2.1.2 29927 1zxoA 291 1.30e+01 1iieA 75 1.35e+01 1iieA a.109.1.1 19039 2a1xA 308 1.40e+01 2knt 58 1.49e+01 1bpi g.8.1.1 44537 1mijA 152 1.50e+01 a.4.1.1 79150 2coeA 120 1.52e+01 1xpxA 163 1.55e+01 1jpmA 366 1.65e+01 c.1.11.2,d.54.1.1 67031,67032 1gefA 123 1.75e+01 1gefA c.52.1.18 60465 1qsgA 265 1.75e+01 1eny c.2.1.2 29935 2aelA 374 1.77e+01 2aegA 268 1.84e+01 1s6cA 183 1.92e+01 a.39.1.5 98594 1tkkA 366 1.92e+01 c.1.11.2,d.54.1.1 107089,107090 1up8A 598 1.93e+01 a.111.1.2 99710 1ofcX 304 2.03e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1qg6A 261 2.09e+01 1eny c.2.1.2 29919 1tx4B 178 2.17e+01 1ctqA c.37.1.8 32045 1kiyA 374 2.19e+01 a.128.1.5 72555 1yyqA 374 2.30e+01 1jfgA 374 2.32e+01 a.128.1.5 66636 1dd9A 338 2.32e+01 1dd9A e.13.1.1 43254 1ie5A 107 2.39e+01 b.1.1.4 62312 2fueA 262 2.40e+01 1x42A 232 2.43e+01 1uvzA 119 2.44e+01 1b5qA 472 2.45e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 2g8lA 299 2.49e+01 1e9eA 215 2.83e+01 c.37.1.1 64810 2trxA 108 2.84e+01 1thx c.47.1.1 32719 1kobA 387 2.90e+01 1tkiA d.144.1.7 41640 1pa2A 306 2.90e+01 1bgp a.93.1.1 18693 1kthA 58 2.94e+01 g.8.1.1 68863 1htwA 158 3.03e+01 c.37.1.18 71083 1je5A 206 3.03e+01 1je5A b.40.4.7 62909 1t00A 112 3.04e+01 1b37B 472 3.09e+01 1b37B c.3.1.2,d.16.1.5 30390,37954 1naqA 112 3.10e+01 d.58.5.2 91761 1fhjB 146 3.25e+01 1abwA a.1.1.2 59838 1b37A 472 3.36e+01 1b37B c.3.1.2,d.16.1.5 30389,37953 1knt 58 3.36e+01 1bpi g.8.1.1 44538 1wmuA 141 3.46e+01 a.1.1.2 109416 1jrmA 104 3.51e+01 d.206.1.1 67136 1j0fA 100 3.52e+01 c.47.1.14 90739 1ib8A 164 3.52e+01 b.38.2.1,d.52.4.1 71168,71169 1s1eA 224 3.55e+01 1oejA 193 3.61e+01 b.60.1.4 92798 1t1vA 93 3.64e+01 c.47.1.14 106278 1t56A 216 3.65e+01 a.4.1.9,a.121.1.1 106428,106429 1e9cA 215 3.73e+01 c.37.1.1 64808 1g8kB 133 3.78e+01 1g8jB b.33.1.1 24435 1xg1A 67 3.88e+01 1iwhA 141 4.00e+01 a.1.1.2 76882 1umhA 184 4.02e+01 b.18.1.21 99605 2b69A 343 4.02e+01 1r9jA 673 4.19e+01 1e2fA 215 4.23e+01 3tmkA c.37.1.1 59164 1ywwA 85 4.34e+01 1x75A 132 4.38e+01 1x3xA 82 4.40e+01 2fcr 173 4.49e+01 1rcf c.23.5.1 31151 1txlA 215 4.54e+01 b.60.1.4 107429 1mszA 86 4.55e+01 d.68.7.1 79428 1gc5A 467 4.56e+01 1gc5A c.72.1.3 60429 2cx6A 90 4.58e+01 1r2zA 274 4.69e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1e2gA 215 4.69e+01 3tmkA c.37.1.1 59165 1nxhA 126 4.70e+01 a.200.1.1 92300 1kebA 108 4.80e+01 c.47.1.1 77341 1h3oA 75 4.82e+01 a.22.1.3 76644 1w4vA 119 4.85e+01 1c8oA 300 4.91e+01 1c8oA e.1.1.1 42677 1ypqA 135 4.95e+01 2fywA 267 4.95e+01 2acaA 189 5.08e+01 1p3jA 217 5.13e+01 c.37.1.1,g.41.2.1 94022,94023 1a4fA 141 5.15e+01 1abwA a.1.1.2 15394 2ganA 190 5.21e+01 1zip 217 5.25e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1h49A 512 5.35e+01 c.1.8.4 83477 1nn5A 215 5.39e+01 c.37.1.1 85892 1zin 217 5.42e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1k82A 268 5.44e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1qapA 296 5.62e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 1gqoD 143 5.63e+01 c.23.13.1 76298 1nxiA 132 5.82e+01 d.58.47.1 86381 1mbg 53 5.90e+01 a.4.1.3 16033 2f86B 143 6.03e+01 1omhA 293 6.07e+01 d.89.1.5 93348 1ba5 53 6.24e+01 1ba5 a.4.1.4 16045 1vhxA 150 6.42e+01 c.55.3.8 100712 1i9sA 210 6.55e+01 1i9sA c.45.1.1 62099 1avc 673 6.80e+01 1avc a.65.1.1,a.65.1.1 18178,18179 1xwyA 264 6.86e+01 1s72M 194 7.13e+01 d.12.1.2 105332 1ecsA 126 7.20e+01 1ecsA d.32.1.2 59407 1cwxA 44 7.20e+01 1cwxA j.54.1.1 46338 1tzaA 134 7.24e+01 b.1.23.1 107468 1e55A 512 7.27e+01 1e70M c.1.8.4 28934 1kmqA 184 7.30e+01 c.37.1.8 84412 1fzqA 181 7.42e+01 1hurA c.37.1.8 32060 2aukA 190 7.43e+01 1f0cA 305 7.55e+01 1c8oA e.1.1.1 42676 2viuA 328 7.63e+01 1hgeA b.19.1.2 23797 1gsoA 431 7.68e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1g7jA 107 7.81e+01 32c2A b.1.1.1 19932 1ifqA 138 8.04e+01 1ifqA d.110.4.1 62350 1qhbA 596 8.07e+01 1qhbA a.111.1.2 19055 1hy5A 136 8.10e+01 a.24.11.1 65955 1o5zA 442 8.31e+01 c.59.1.2,c.72.2.2 92530,92531 2eu8A 216 8.34e+01 1b64 91 8.37e+01 1b64 d.58.12.1 39306 1d3gA 367 8.47e+01 1d3gA c.1.4.1 28600 2b5nA 323 8.51e+01 1uumA 372 8.61e+01 c.1.4.1 100010 1rboC 123 8.72e+01 1rboC d.73.1.1 39634 1e0eA 55 8.75e+01 1wjcA a.4.10.1 59147 1eexA 554 8.75e+01 1dioA c.1.19.3 29650