# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yvcA 70 2.26e+00 1dkgA 197 4.33e+00 1dkgA b.73.1.1,h.1.9.1 27812,45626 1aijM 307 5.21e+00 6prcM f.26.1.1 43462 1dkgB 197 5.29e+00 1dkgA b.73.1.1,h.1.9.1 27813,45627 1rzhM 307 5.31e+00 f.26.1.1 98165 1aijS 301 5.90e+00 6prcM f.26.1.1 43465 1x3xA 82 6.91e+00 2coeA 120 7.28e+00 1u96A 69 7.57e+00 1cwxA 44 8.03e+00 1cwxA j.54.1.1 46338 2h88C 140 8.52e+00 2fbwC 141 9.15e+00 1yl35 60 9.70e+00 1kobA 387 9.96e+00 1tkiA d.144.1.7 41640 1kx5A 135 1.03e+01 a.22.1.1 77593 1mszA 86 1.09e+01 d.68.7.1 79428 1vor2 58 1.15e+01 1al8 359 1.51e+01 1gox c.1.4.1 28608 1jzxM 60 1.51e+01 i.1.1.2 67887 1kzuB 41 1.67e+01 1kzuB f.3.1.1 43728 1nkzB 41 1.67e+01 f.3.1.1 80612 1bev1 281 1.70e+01 1aym1 1fo1A 271 1.79e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1f66A 136 1.89e+01 1aoiA a.22.1.1 16460 2azqA 311 1.91e+01 1aoiA 116 1.94e+01 1aoiA a.22.1.1 16462 2bolA 314 2.26e+01 1hq3C 136 2.38e+01 1aoiA a.22.1.1 16454 1fp0A 88 2.43e+01 1fp0A g.50.1.2 45361 1mnmA 100 2.47e+01 1mnmA d.88.1.1 40232 1umhA 184 2.52e+01 b.18.1.21 99605 1tzyC 136 2.55e+01 a.22.1.1 107532 1xg1A 67 2.59e+01 1nxhA 126 2.90e+01 a.200.1.1 92300 2d0sA 79 3.11e+01 1ppjE 196 3.12e+01 b.33.1.1,f.23.12.1 104260,104261 1tme3 236 3.24e+01 1qqp3 1klnA 605 3.25e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1hbxA 92 3.48e+01 1mnmA d.88.1.1 60930 1ek9A 428 3.51e+01 1ek9A f.5.1.1 43809 2knt 58 3.70e+01 1bpi g.8.1.1 44537 1mkkA 96 3.83e+01 g.17.1.1 79240 1vppV 102 3.93e+01 1vpfA g.17.1.1 44753 1kx5B 102 4.03e+01 a.22.1.1 77594 3hmgA 328 4.13e+01 1hgeA b.19.1.2 23825 1kthA 58 4.15e+01 g.8.1.1 68863 1wjuA 100 4.21e+01 1hgeA 328 4.22e+01 1hgeA b.19.1.2 23816 1ezvE 185 4.32e+01 1rie b.33.1.1,f.23.12.1 59548,59549 1zchA 255 4.43e+01 2nef 136 4.45e+01 1efnB d.102.1.1 40704 1fwoA 35 4.47e+01 1fwoA g.3.16.1 60062 1knt 58 4.74e+01 1bpi g.8.1.1 44538 1r1a1 287 5.35e+01 1aym1 1lkvX 232 5.36e+01 a.118.14.1 73980 1kkdA 102 5.40e+01 f.15.1.1 68668 1t6aA 126 5.50e+01 d.129.8.1 106555 1c14A 262 5.65e+01 1eny c.2.1.2 29927 1ipcA 217 5.74e+01 d.86.1.1 71257 1idy 54 5.86e+01 1a5j a.4.1.3 16034 1s6cA 183 5.88e+01 a.39.1.5 98594 1x1fA 149 5.92e+01 1b6q 63 5.95e+01 1nkd a.30.1.1 16977 1fltV 98 5.98e+01 1vpfA g.17.1.1 44751 2cq7A 49 6.01e+01 1naqA 112 6.10e+01 d.58.5.2 91761 1k1fA 72 6.41e+01 a.147.1.1 68007 1gtdA 85 6.54e+01 d.284.1.1 76344 1g9lA 144 6.55e+01 1g9lA a.144.1.1 60399 1b64 91 6.57e+01 1b64 d.58.12.1 39306 1aonO 97 6.59e+01 b.35.1.1 24642 1vpfA 102 6.62e+01 1vpfA g.17.1.1 44767 1huvA 380 6.63e+01 c.1.4.1 61277 1ie5A 107 6.67e+01 b.1.1.4 62312 1l1zA 274 6.76e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1r8oA 96 6.80e+01 b.42.4.1 104852 1fipA 98 6.80e+01 1fipA a.4.1.12 18980 1yduA 170 6.80e+01 1dmhA 311 7.04e+01 1dmhA b.3.6.1 22633 1fpxA 352 7.05e+01 1fpxA a.4.5.29,c.66.1.12 59950,59951 1e0eA 55 7.19e+01 1wjcA a.4.10.1 59147 1ldjB 90 7.25e+01 g.44.1.1 73850 1vie 62 7.40e+01 1vie b.34.4.1 24592 1ckwA 25 7.53e+01 j.35.1.1 46271 1fp2A 352 7.54e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1iarB 207 7.60e+01 1iarB b.1.2.1,b.1.2.1 22037,22038 1mijA 152 7.68e+01 a.4.1.1 79150 1vif 62 7.70e+01 1vie b.34.4.1 24593 1dw0A 112 7.70e+01 1dw0A a.3.1.1 15911 1rgxA 114 7.73e+01 g.77.1.1 104932 1wh8A 111 7.83e+01 1ytzT 107 7.94e+01 1aci 76 8.13e+01 1qa6A a.4.7.1 16246 2a50A 73 8.17e+01 1vkwA 218 8.51e+01 d.90.1.2 108695 1p4qA 52 8.51e+01 j.96.1.1 87777 1l4aE 79 8.51e+01 h.1.15.1 73563 1ijdB 42 8.57e+01 f.3.1.1 66156 1aym3 238 8.59e+01 1aym3 1r2zA 274 8.61e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1qo0D 196 8.78e+01 1qo0D c.23.1.3 31125 1i4tB 224 8.85e+01 h.4.7.1 61730 1cxvA 164 8.86e+01 1ck7A d.92.1.11 40404 1ba5 53 8.89e+01 1ba5 a.4.1.4 16045 1p4cA 380 8.92e+01 c.1.4.1 94100 1utiA 58 8.96e+01 b.34.2.1 99962 1k82A 268 8.99e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868