# TARGET T0386 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0386.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.39455 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.033 0.017 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.005 0.067 0.851 2 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 3 K 0.003 0.005 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.045 0.926 4 A 0.107 0.060 0.001 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.051 0.007 0.109 0.654 5 K 0.179 0.197 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.064 0.006 0.066 0.475 6 A 0.127 0.270 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.003 0.001 0.001 0.003 0.001 0.001 0.001 0.039 0.012 0.070 0.463 7 K 0.117 0.256 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.062 0.023 0.039 0.496 8 T 0.153 0.291 0.008 0.001 0.001 0.001 0.001 0.001 0.012 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.050 0.031 0.043 0.403 9 K 0.079 0.184 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.088 0.036 0.080 0.524 10 N 0.037 0.083 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.019 0.227 0.556 11 T 0.149 0.066 0.017 0.004 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.122 0.037 0.067 0.530 12 E 0.037 0.078 0.004 0.001 0.002 0.005 0.005 0.002 0.001 0.001 0.001 0.002 0.002 0.008 0.005 0.003 0.173 0.014 0.205 0.453 13 I 0.069 0.043 0.012 0.001 0.005 0.001 0.002 0.002 0.001 0.001 0.002 0.002 0.022 0.034 0.010 0.002 0.086 0.022 0.117 0.567 14 I 0.055 0.069 0.003 0.002 0.001 0.005 0.002 0.004 0.001 0.025 0.006 0.002 0.003 0.001 0.001 0.001 0.494 0.007 0.049 0.269 15 S 0.018 0.049 0.001 0.001 0.001 0.001 0.003 0.001 0.117 0.058 0.017 0.001 0.001 0.001 0.001 0.001 0.135 0.007 0.108 0.481 16 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 17 H 0.012 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.126 0.013 0.299 0.534 18 H 0.640 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.047 0.049 0.059 0.192 19 Y 0.080 0.044 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.007 0.018 0.004 0.180 0.007 0.160 0.472 20 V 0.033 0.015 0.010 0.002 0.054 0.028 0.003 0.010 0.001 0.004 0.001 0.002 0.002 0.005 0.002 0.001 0.434 0.007 0.074 0.314 21 Y 0.024 0.017 0.001 0.001 0.002 0.097 0.022 0.005 0.021 0.016 0.056 0.005 0.005 0.002 0.002 0.002 0.236 0.003 0.094 0.388 22 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.994 23 N 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.130 0.006 0.149 0.697 24 T 0.481 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.075 0.018 0.046 0.368 25 T 0.105 0.059 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.109 0.009 0.187 0.526 26 T 0.080 0.059 0.012 0.001 0.011 0.003 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.008 0.220 0.486 27 L 0.078 0.188 0.002 0.001 0.002 0.014 0.003 0.002 0.002 0.001 0.001 0.001 0.009 0.014 0.003 0.001 0.219 0.006 0.120 0.334 28 K 0.061 0.305 0.003 0.001 0.004 0.009 0.044 0.005 0.001 0.001 0.003 0.001 0.002 0.001 0.001 0.001 0.128 0.005 0.112 0.315 29 N 0.056 0.374 0.002 0.001 0.001 0.001 0.001 0.004 0.020 0.028 0.003 0.001 0.002 0.001 0.001 0.001 0.104 0.014 0.059 0.327 30 K 0.088 0.438 0.005 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.016 0.049 0.316 31 Y 0.047 0.350 0.008 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.020 0.201 0.320 32 G 0.249 0.193 0.059 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.063 0.082 0.326 33 I 0.131 0.276 0.093 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.011 0.058 0.359 34 K 0.034 0.166 0.012 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.012 0.104 0.618 35 N 0.081 0.132 0.015 0.001 0.003 0.009 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.011 0.012 0.112 0.620 36 L 0.063 0.148 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.013 0.061 0.659 37 N 0.011 0.108 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.024 0.334 0.519 38 A 0.074 0.130 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.521 0.242 39 F 0.021 0.932 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.040 40 L 0.009 0.916 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.008 0.056 41 E 0.025 0.875 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.007 0.004 0.085 42 K 0.089 0.815 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.002 0.062 43 C 0.087 0.818 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.026 0.003 0.061 44 S 0.071 0.517 0.073 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.032 0.025 0.268 45 H 0.067 0.234 0.072 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.021 0.056 0.525 46 D 0.131 0.214 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.025 0.063 0.544 47 T 0.042 0.250 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.016 0.134 0.543 48 A 0.023 0.322 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.010 0.147 0.480 49 K 0.016 0.551 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.012 0.116 0.284 50 A 0.030 0.675 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.013 0.065 0.194 51 M 0.029 0.855 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.008 0.004 0.079 52 I 0.010 0.910 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.005 0.002 0.044 53 N 0.018 0.882 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.013 0.003 0.050 54 L 0.051 0.776 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.026 0.007 0.091 55 R 0.049 0.689 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.022 0.029 0.157 56 E 0.088 0.428 0.030 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.033 0.034 0.032 0.348 57 E 0.124 0.322 0.026 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.054 0.031 0.048 0.384 58 S 0.118 0.114 0.025 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.030 0.065 0.601 59 L 0.078 0.060 0.040 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.009 0.070 0.697 60 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 61 E 0.040 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.005 0.155 0.767 62 Y 0.452 0.062 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.017 0.041 0.403 63 F 0.289 0.270 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.011 0.027 0.350 64 D 0.082 0.305 0.009 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.008 0.101 0.424 65 T 0.041 0.406 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.050 0.006 0.061 0.431 66 A 0.036 0.672 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.007 0.075 0.178 67 Y 0.025 0.765 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.005 0.073 0.109 68 L 0.015 0.873 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.003 0.009 0.076 69 C 0.010 0.884 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.003 0.009 0.075 70 H 0.017 0.833 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.006 0.010 0.118 71 I 0.020 0.873 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.003 0.076 72 H 0.016 0.908 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.005 0.002 0.053 73 Q 0.029 0.864 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.011 0.002 0.081 74 Q 0.079 0.766 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.025 0.004 0.103 75 L 0.091 0.742 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.028 0.003 0.109