# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ip9A 85 3.29e-01 1ip9A d.15.2.2 62638 2coeA 120 4.60e-01 1x3xA 82 1.55e+00 1khbA 625 1.71e+00 c.91.1.1,c.109.1.1 68606,68607 2herA 368 1.95e+00 1ow4A 129 1.98e+00 a.39.2.1 93628 1dmhA 311 2.16e+00 1dmhA b.3.6.1 22633 2h88C 140 3.60e+00 1ncs 47 5.24e+00 1ncs g.37.1.1 45040 2anxA 146 5.48e+00 1ypqA 135 5.67e+00 2bmaA 470 5.93e+00 2b2nA 344 6.69e+00 1cmcA 104 6.82e+00 1cmbA a.43.1.5 17462 1ww8A 439 6.96e+00 1xw3A 110 7.37e+00 1f2vA 219 7.56e+00 1f2vA c.23.17.1 59627 1i7hA 111 7.74e+00 d.15.4.1 71122 2fbwC 141 8.23e+00 1lzjA 292 8.80e+00 c.68.1.9 74352 1irdA 141 8.85e+00 a.1.1.2 66286 1f45B 197 9.07e+00 1f45B a.26.1.1 59642 1ux5A 411 9.50e+00 a.207.1.1 100144 1pyoB 105 9.65e+00 1w2lA 99 1.02e+01 1pzlA 237 1.08e+01 a.123.1.1 104393 1xzoA 174 1.16e+01 1vquA 374 1.22e+01 1ua4A 455 1.28e+01 c.72.1.3 99128 1jy2O 56 1.32e+01 h.1.8.1 67441 1j2mA 99 1.49e+01 a.165.1.1 84018 2f6rA 281 1.52e+01 1wudA 89 1.63e+01 1kthA 58 1.64e+01 g.8.1.1 68863 1kn7A 78 1.68e+01 j.12.1.1 84413 2akaB 299 1.70e+01 2g0qA 173 1.72e+01 1nb9A 147 1.73e+01 b.43.5.1 85515 2clbA 188 1.79e+01 1yzsA 121 1.86e+01 1gox 370 1.86e+01 1gox c.1.4.1 28607 1wwuA 99 1.91e+01 1d2vA 104 1.92e+01 1d2vA a.93.1.2 18697 1reqA 727 1.95e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1x3cA 73 1.99e+01 1k3bB 164 2.05e+01 d.3.1.1 72015 1v58A 241 2.15e+01 c.47.1.9,d.17.3.1 108371,108372 1kqfC 217 2.19e+01 f.21.1.1 72874 2ad6B 69 2.28e+01 2bi7A 384 2.29e+01 1d8bA 81 2.31e+01 1d8bA a.60.8.1 18094 1rzhM 307 2.32e+01 f.26.1.1 98165 1tueB 218 2.33e+01 b.91.1.1 107324 1v54J 59 2.34e+01 f.23.4.1 100331 1dwnA 127 2.39e+01 1dwnA d.85.1.1 40141 1zm7A 230 2.49e+01 1zq9A 285 2.58e+01 1t6aA 126 2.63e+01 d.129.8.1 106555 1jy2P 48 2.72e+01 h.1.8.1 67442 1ef1C 90 2.79e+01 1ef1C a.137.5.1 19642 1oeyA 83 2.84e+01 d.15.2.2 92800 1r5iD 216 2.89e+01 a.202.1.1 97091 2gumA 628 2.89e+01 1wdcB 156 2.91e+01 1wdcB a.39.1.5 17302 1yqbA 100 2.93e+01 1gmuA 143 2.93e+01 b.107.1.1,d.58.38.1 65335,65336 1kk8B 139 2.96e+01 a.39.1.5 77430 2fgoA 82 3.00e+01 1hz6A 72 3.11e+01 2ptl d.15.7.1 61429 1jy2N 53 3.24e+01 h.1.8.1 67440 2a1kA 233 3.25e+01 1xqbA 247 3.25e+01 1t0qC 86 3.30e+01 d.15.12.1 106222 1mbyA 88 3.34e+01 d.223.1.1 78931 2a05A 57 3.37e+01 2erbA 125 3.47e+01 2ct5A 73 3.48e+01 1xm7A 195 3.51e+01 1wmuA 141 3.57e+01 a.1.1.2 109416 1o7nB 194 3.61e+01 d.17.4.4 81164 1tocR 120 3.65e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1q7lB 88 3.65e+01 1k1fA 72 3.67e+01 a.147.1.1 68007 2dkoB 103 3.70e+01 2ghfA 102 3.93e+01 1wguA 136 3.97e+01 1zowA 313 4.06e+01 1sseB 86 4.12e+01 1lu0A 29 4.12e+01 g.3.2.1 74255 1cpq 129 4.18e+01 1cpq a.24.3.2 16556 1u00A 227 4.18e+01 1udkA 51 4.29e+01 g.3.14.1 99211 1kb9H 93 4.29e+01 f.23.13.1 77323 1yuiA 54 4.35e+01 1yuiA g.37.1.1 45073 1m0dA 138 4.36e+01 c.52.1.17 74354 1kutA 230 4.36e+01 d.143.1.1 73017 1qwlA 505 4.37e+01 e.5.1.1 96483 1wddS 128 4.38e+01 1du3A 130 4.45e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 1gk8I 140 4.46e+01 d.73.1.1 65242 1vcdA 126 4.50e+01 1p4cA 380 4.51e+01 c.1.4.1 94100 1i19A 561 4.51e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2btcI 29 4.55e+01 g.3.2.1 44070 1thx 115 4.56e+01 1thx c.47.1.1 32732 1n08A 163 4.61e+01 b.43.5.1 79730 1zmeC 70 4.67e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 1w6sB 74 4.69e+01 1u5uA 374 4.70e+01 2bhoA 130 4.78e+01 1wjpA 107 4.82e+01 1pcfA 66 5.04e+01 1pcfA d.18.1.1 38142 1ifqA 138 5.08e+01 1ifqA d.110.4.1 62350 1sr2A 116 5.09e+01 1ct9A 553 5.16e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 2c4jA 218 5.21e+01 1csn 298 5.29e+01 1csn d.144.1.7 41664 1r8sA 164 5.37e+01 c.37.1.8 97247 1ztsA 139 5.45e+01 1kv0A 66 5.45e+01 g.3.7.1 91040 1nkiA 135 5.50e+01 d.32.1.2 91941 1y9bA 90 5.60e+01 1w4vA 119 5.61e+01 1j3aA 142 5.61e+01 c.21.1.1 77070 1oxxK 353 5.66e+01 b.40.6.3,c.37.1.12 93715,93716 1fm0D 81 5.71e+01 1fmaD d.15.3.1 37642 2bbeA 108 5.72e+01 2ixmA 303 5.85e+01 2d5xA 141 5.87e+01 2c5kT 95 5.87e+01 1ovlA 271 5.88e+01 a.123.1.1 87455 1s6cA 183 5.91e+01 a.39.1.5 98594 2d0sA 79 6.05e+01 1mr1C 99 6.08e+01 d.217.1.2 79420 1omrA 201 6.17e+01 a.39.1.5 93349 2fi3I 58 6.22e+01 1quuA 250 6.38e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 2iufA 688 6.44e+01 1uwmA 106 6.45e+01 1gu2A 124 6.45e+01 a.3.1.1 76348 1sc3B 88 6.56e+01 1fobA 334 6.63e+01 c.1.8.3 83255 2g62A 325 6.74e+01 1n13A 52 6.78e+01 d.155.1.2 85248 3pviA 157 6.85e+01 3pviA c.52.1.6 33300 2bidA 197 6.86e+01 2bidA f.1.4.1 43398 1nekC 129 6.97e+01 f.21.2.2 80431 1t3yA 141 6.99e+01 1vc3B 97 6.99e+01 1kpsB 171 7.03e+01 a.118.12.1 68787 1p94A 76 7.04e+01 a.43.1.3 94380 1ctqA 166 7.06e+01 1ctqA c.37.1.8 31965 3il8 72 7.11e+01 1tvxA d.9.1.1 37356 1n46A 258 7.12e+01 a.123.1.1 85315 2nacA 393 7.12e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 2gcuA 245 7.13e+01 1vqoU 66 7.21e+01 1ppjG 81 7.22e+01 f.23.13.1 104263 2h79A 269 7.25e+01 1p80A 753 7.36e+01 c.23.16.3,e.5.1.1 94337,94338 1d3gA 367 7.36e+01 1d3gA c.1.4.1 28600 2blfB 81 7.49e+01 1euvB 86 7.52e+01 1a5r d.15.1.1 37598 1g6xA 58 7.52e+01 1bpi g.8.1.1 60320 1nu7D 282 7.56e+01 a.8.6.1,a.8.6.1 92191,92192 1yphC 131 7.63e+01 1ry3A 64 7.80e+01 j.106.1.1 98084 1o9yA 84 7.81e+01 b.139.1.1 92692 2dasA 62 7.85e+01 1fs0E 138 7.85e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1t00A 112 7.91e+01 2ixiA 184 7.92e+01 1v54L 47 8.02e+01 f.23.6.1 100333 1ucpA 91 8.14e+01 a.77.1.5 99186 1usgA 346 8.20e+01 c.93.1.1 99864 1hx1B 114 8.21e+01 1hx1B a.7.7.1 61350 2d2mC 147 8.34e+01 2bx9A 53 8.47e+01 2ge7A 108 8.50e+01 2ftzA 284 8.57e+01 1ysrA 150 8.64e+01 1nd4A 264 8.70e+01 d.144.1.6 91815 1ir21 140 8.77e+01 2bt6A 108 8.78e+01 1wwtA 88 8.83e+01 1r0rI 51 8.84e+01 g.68.1.1 96736 1mvcA 240 8.96e+01 a.123.1.1 79499 1yvcA 70 8.99e+01