# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2c46A 241 4.64e-01 1x3xA 82 5.89e-01 1r6xA 395 7.24e-01 b.122.1.3,c.26.1.5 97167,97168 2g0qA 173 7.57e-01 1kqfC 217 9.16e-01 f.21.1.1 72874 1d3gA 367 2.31e+00 1d3gA c.1.4.1 28600 1ypqA 135 2.33e+00 2d0sA 79 2.41e+00 1i7hA 111 2.42e+00 d.15.4.1 71122 1ylmA 144 2.93e+00 1ysrA 150 3.52e+00 1dmhA 311 4.64e+00 1dmhA b.3.6.1 22633 2herA 368 5.90e+00 1s6cA 183 7.91e+00 a.39.1.5 98594 1ow4A 129 8.91e+00 a.39.2.1 93628 1eueA 86 9.63e+00 1cyo d.120.1.1 59504 1ym3A 215 1.02e+01 1zowA 313 1.05e+01 1sfkA 76 1.41e+01 a.190.1.1 105488 2cohA 202 1.51e+01 1x8gA 227 1.52e+01 1q35A 320 1.57e+01 c.94.1.1 95661 2ca6A 386 1.65e+01 1x8hA 228 1.68e+01 1uok 558 1.69e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1yqfA 203 1.81e+01 1ucpA 91 2.04e+01 a.77.1.5 99186 1ii5A 233 2.18e+01 c.94.1.1 62412 1eexA 554 2.19e+01 1dioA c.1.19.3 29650 1r9kA 172 2.23e+01 a.168.1.1 104869 2ddfA 257 2.23e+01 2clbA 188 2.27e+01 2eucA 130 2.31e+01 1puc 105 2.40e+01 1puc d.97.1.1 40675 1khbA 625 2.40e+01 c.91.1.1,c.109.1.1 68606,68607 2fi1A 190 2.40e+01 1z4eA 153 2.49e+01 1pvdA 537 2.54e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1ofzA 312 2.59e+01 b.68.8.1 86978 1zejA 293 2.62e+01 1gmlA 178 2.71e+01 c.8.5.2 70273 1sumB 235 2.86e+01 a.7.12.1 106025 1q7lB 88 2.91e+01 1cmcA 104 2.98e+01 1cmbA a.43.1.5 17462 2d2yA 145 3.02e+01 1t1vA 93 3.04e+01 c.47.1.14 106278 1t2dA 322 3.19e+01 c.2.1.5,d.162.1.1 99084,99085 1vj0A 380 3.19e+01 b.35.1.2,c.2.1.1 100786,100787 1tl9A 339 3.22e+01 1t3iA 420 3.32e+01 c.67.1.3 106354 2cmwA 310 3.32e+01 1t0qC 86 3.39e+01 d.15.12.1 106222 1vp7A 100 3.40e+01 2gncA 60 3.45e+01 1zbsA 291 3.47e+01 1vp6A 138 3.47e+01 1jftA 340 3.62e+01 a.35.1.5,c.93.1.1 66652,66653 1q4uA 151 3.67e+01 d.38.1.5 95828 1amuA 563 3.69e+01 1amuA e.23.1.1 43351 1q60A 99 3.70e+01 1u5uA 374 3.81e+01 1ua4A 455 3.83e+01 c.72.1.3 99128 1gnuA 117 3.88e+01 d.15.1.3 65403 1ifqA 138 3.92e+01 1ifqA d.110.4.1 62350 2fbqA 235 3.99e+01 1vgjA 184 4.00e+01 1g2nA 264 4.05e+01 1lbd a.123.1.1 60227 1hx1B 114 4.05e+01 1hx1B a.7.7.1 61350 1jvr 137 4.05e+01 1jvr a.61.1.2 18132 1u8fO 335 4.19e+01 1irdA 141 4.26e+01 a.1.1.2 66286 1zd7A 159 4.43e+01 1o66A 275 4.45e+01 c.1.12.8 92547 2d9bA 109 4.47e+01 1mun 225 4.47e+01 1mun a.96.1.2 18744 1ew4A 106 4.48e+01 1ew4A d.82.2.1 40023 1wozA 177 4.49e+01 2b2nA 344 4.78e+01 2gk9A 426 4.79e+01 1n46A 258 5.06e+01 a.123.1.1 85315 1dbqA 289 5.35e+01 1qpzA c.93.1.1 35666 1cjxA 357 5.45e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 2vsgA 358 5.47e+01 2vsgA h.4.1.1 45780 2b3fA 400 5.51e+01 1zz1A 369 5.55e+01 1eh8A 207 5.95e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 2bi7A 384 6.02e+01 1zkiA 133 6.12e+01 2arzA 247 6.14e+01 1l5oA 356 6.15e+01 c.39.1.1 77711 1h70A 255 6.23e+01 1h70A d.126.1.3 60711 1ir6A 424 6.23e+01 c.107.1.2 71342 1p5zB 263 6.27e+01 c.37.1.1 87815 1gzsB 165 6.30e+01 a.168.1.1 76425 1woyA 500 6.31e+01 1kblA 873 6.32e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1m2dA 110 6.33e+01 c.47.1.11 78476 1xzoA 174 6.36e+01 1v9sA 208 6.36e+01 1gr0A 367 6.40e+01 c.2.1.3,d.81.1.3 70379,70380 1dqzA 280 6.46e+01 1dqyA c.69.1.3 34638 2h79A 269 6.52e+01 1o1yA 239 6.66e+01 c.23.16.1 86554 2g8jA 339 6.75e+01 1rybA 212 6.78e+01 c.56.3.1 98098 1wudA 89 6.94e+01 1xmpA 170 6.95e+01 1zp4A 304 7.03e+01 1bhdA 118 7.07e+01 1bkrA a.40.1.1 17398 1bbzA 58 7.08e+01 1bbzA b.34.2.1 24477 2a65A 519 7.22e+01 1nmoA 247 7.25e+01 c.135.1.1 91980 1l6rA 227 7.27e+01 c.108.1.10 77768 1vs0A 310 7.32e+01 1hztA 190 7.34e+01 1i9aA d.113.1.2 61459 1kthA 58 7.43e+01 g.8.1.1 68863 1oxwA 373 7.45e+01 c.19.1.3 87539 1u7gA 385 7.46e+01 f.44.1.1 107723 1wjgA 137 7.51e+01 2ge7A 108 7.62e+01 2akaB 299 7.64e+01 5csmA 256 7.79e+01 5csmA a.130.1.2 19494 7taa 478 7.84e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2a1xA 308 8.11e+01 1mucA 373 8.17e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1zm7A 230 8.22e+01 1ojrA 274 8.31e+01 c.74.1.1 93147 1oewA 329 8.32e+01 b.50.1.2 86924 1vr5A 547 8.34e+01 1orvA 728 8.34e+01 b.70.3.1,c.69.1.24 87354,87355 1mi3A 322 8.48e+01 c.1.7.1 91274 1tx9A 151 8.54e+01 1w4vA 119 8.59e+01 1gox 370 8.64e+01 1gox c.1.4.1 28607 1bb9 115 8.74e+01 1bb9 b.34.2.1 24554 2g8lA 299 8.74e+01 1bqbA 301 8.92e+01 1hyt d.92.1.2 58962 1z2nX 324 8.94e+01 1yhtA 367 8.94e+01 1gd1O 334 8.97e+01 1dssG c.2.1.3,d.81.1.1 29962,39877