# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i7hA 111 5.53e-01 d.15.4.1 71122 2c46A 241 8.65e-01 1x3xA 82 1.23e+00 1dmhA 311 1.53e+00 1dmhA b.3.6.1 22633 1ypqA 135 2.26e+00 2clbA 188 2.28e+00 1r6xA 395 2.87e+00 b.122.1.3,c.26.1.5 97167,97168 1kqfC 217 2.89e+00 f.21.1.1 72874 1zbsA 291 4.23e+00 1sfkA 76 4.51e+00 a.190.1.1 105488 1ifqA 138 4.73e+00 1ifqA d.110.4.1 62350 1ym3A 215 5.06e+00 1khbA 625 5.12e+00 c.91.1.1,c.109.1.1 68606,68607 1xzoA 174 5.36e+00 2herA 368 6.33e+00 2c4jA 218 6.41e+00 1ow4A 129 6.43e+00 a.39.2.1 93628 1s6cA 183 6.54e+00 a.39.1.5 98594 1ysrA 150 6.91e+00 1ylmA 144 7.23e+00 2g0qA 173 7.92e+00 2akaB 299 8.20e+00 1d3gA 367 9.41e+00 1d3gA c.1.4.1 28600 1zcjA 463 1.06e+01 1kv0A 66 1.06e+01 g.3.7.1 91040 1zejA 293 1.15e+01 1f7zA 233 1.18e+01 5ptp b.47.1.2 59681 1ua4A 455 1.20e+01 c.72.1.3 99128 1zd7A 159 1.38e+01 1djtA 64 1.51e+01 1aho g.3.7.1 44132 1ucpA 91 1.54e+01 a.77.1.5 99186 1vj0A 380 1.59e+01 b.35.1.2,c.2.1.1 100786,100787 1gmuA 143 1.64e+01 b.107.1.1,d.58.38.1 65335,65336 1zowA 313 1.65e+01 1y60A 169 1.73e+01 1irdA 141 1.78e+01 a.1.1.2 66286 1t0qC 86 1.95e+01 d.15.12.1 106222 1cmcA 104 2.03e+01 1cmbA a.43.1.5 17462 1t1vA 93 2.04e+01 c.47.1.14 106278 1s83A 223 2.13e+01 b.47.1.2 98718 2a1xA 308 2.15e+01 1mun 225 2.17e+01 1mun a.96.1.2 18744 1eexA 554 2.19e+01 1dioA c.1.19.3 29650 1q4uA 151 2.19e+01 d.38.1.5 95828 2a31A 223 2.20e+01 1hj9A 226 2.36e+01 b.47.1.2 65845 2b2nA 344 2.51e+01 1u5uA 374 2.61e+01 1sumB 235 2.72e+01 a.7.12.1 106025 2cmwA 310 2.76e+01 1vp6A 138 2.76e+01 1nt2A 210 2.88e+01 c.66.1.3 86149 1jvr 137 2.89e+01 1jvr a.61.1.2 18132 1elvA 333 2.94e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1ddjA 247 3.12e+01 5ptp b.47.1.2 26362 1zm7A 230 3.25e+01 1h9hE 223 3.25e+01 b.47.1.2 103810 1u7gA 385 3.36e+01 f.44.1.1 107723 2d83A 363 3.40e+01 2drwA 363 3.40e+01 1xmpA 170 3.53e+01 1dpo 223 3.68e+01 5ptp b.47.1.2 25975 2atzA 180 3.70e+01 1xm7A 195 3.71e+01 1r0pA 312 3.74e+01 d.144.1.7 96734 2btcI 29 3.75e+01 g.3.2.1 44070 1j96A 323 3.79e+01 c.1.7.1 71616 1vhoA 346 3.83e+01 b.49.3.1,c.56.5.4 100694,100695 1t2dA 322 3.91e+01 c.2.1.5,d.162.1.1 99084,99085 1gox 370 3.91e+01 1gox c.1.4.1 28607 1z2nX 324 3.97e+01 1p5zB 263 4.04e+01 c.37.1.1 87815 1y9bA 90 4.06e+01 1va6A 518 4.09e+01 1hx1B 114 4.13e+01 1hx1B a.7.7.1 61350 1qw9A 502 4.15e+01 b.71.1.2,c.1.8.3 96466,96467 1s1pA 331 4.22e+01 c.1.7.1 98350 1wozA 177 4.32e+01 1pfvA 551 4.35e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1kk8B 139 4.42e+01 a.39.1.5 77430 1ip9A 85 4.46e+01 1ip9A d.15.2.2 62638 2fbqA 235 4.55e+01 2cw9A 194 4.78e+01 1lu0A 29 4.79e+01 g.3.2.1 74255 1tdzA 272 4.82e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2gncA 60 4.89e+01 1ivyA 452 5.03e+01 1ivyA c.69.1.5 34654 1k1fA 72 5.05e+01 a.147.1.1 68007 1pyoB 105 5.31e+01 2ad6A 571 5.41e+01 2d0sA 79 5.43e+01 1mwvA 714 5.47e+01 a.93.1.3,a.93.1.3 85161,85162 2bsjA 133 5.47e+01 2gk9A 426 5.57e+01 2bt6A 108 5.59e+01 1hyp 80 5.65e+01 1hyp a.52.1.1 17806 2ddfA 257 5.82e+01 2d9bA 109 5.82e+01 1ie9A 259 5.90e+01 1db1A a.123.1.1 62318 1mucA 373 5.99e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 7taa 478 6.03e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1v58A 241 6.05e+01 c.47.1.9,d.17.3.1 108371,108372 1fxxA 482 6.12e+01 1fxxA c.55.3.5 33726 1wdcB 156 6.13e+01 1wdcB a.39.1.5 17302 1kblA 873 6.14e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1zkiA 133 6.26e+01 1ekjA 221 6.30e+01 1ekjB c.53.2.1 33364 1ijtA 128 6.32e+01 1bfg b.42.1.1 62510 2c5qA 240 6.35e+01 2ge7A 108 6.38e+01 1w4vA 119 6.50e+01 2d2yA 145 6.54e+01 1n46A 258 6.60e+01 a.123.1.1 85315 1yphC 131 6.67e+01 2bbeA 108 7.01e+01 2b6dA 345 7.37e+01 1cpq 129 7.51e+01 1cpq a.24.3.2 16556 2bhoA 130 7.74e+01 2bi7A 384 7.79e+01 1l5oA 356 7.85e+01 c.39.1.1 77711 2bwvA 440 7.85e+01 1a7w 69 7.94e+01 1a7w a.22.1.2 16477 1h7cA 108 8.04e+01 a.7.5.1 70914 1o7fA 469 8.05e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2d5xA 141 8.06e+01 1lam 484 8.26e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1vc3B 97 8.29e+01 1oxxK 353 8.34e+01 b.40.6.3,c.37.1.12 93715,93716 1kb9D 246 8.35e+01 a.3.1.3,f.23.11.1 77317,77318 1eueA 86 8.37e+01 1cyo d.120.1.1 59504 1vr5A 547 8.38e+01 2sqcA 631 8.41e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1nmoA 247 8.45e+01 c.135.1.1 91980 1ldjA 760 8.55e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1knyA 253 8.59e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1m0dA 138 8.64e+01 c.52.1.17 74354 1woyA 500 8.65e+01 1uok 558 8.70e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1puc 105 8.77e+01 1puc d.97.1.1 40675 1whsA 255 8.79e+01 1ivyA c.69.1.5 34649 1ve3A 227 8.79e+01 1t3yA 141 8.83e+01 2coeA 120 8.88e+01 1nd4A 264 8.95e+01 d.144.1.6 91815