# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zejA 293 1.12e+00 2clbA 188 1.28e+00 1ysrA 150 1.28e+00 1sumB 235 1.36e+00 a.7.12.1 106025 1ylmA 144 1.48e+00 1r6xA 395 1.59e+00 b.122.1.3,c.26.1.5 97167,97168 1ypqA 135 1.72e+00 1i7hA 111 1.75e+00 d.15.4.1 71122 1ym3A 215 1.85e+00 1tkkA 366 2.11e+00 c.1.11.2,d.54.1.1 107089,107090 1l6rA 227 2.28e+00 c.108.1.10 77768 1l5oA 356 2.38e+00 c.39.1.1 77711 1eexA 554 3.60e+00 1dioA c.1.19.3 29650 1vj0A 380 3.96e+00 b.35.1.2,c.2.1.1 100786,100787 1dmhA 311 4.10e+00 1dmhA b.3.6.1 22633 1mun 225 4.21e+00 1mun a.96.1.2 18744 1xzoA 174 4.92e+00 2c46A 241 6.06e+00 1zbsA 291 6.12e+00 1vp7A 100 6.49e+00 1t1vA 93 6.61e+00 c.47.1.14 106278 1s6cA 183 7.05e+00 a.39.1.5 98594 1zcjA 463 7.23e+00 2cohA 202 8.39e+00 1gmuA 143 9.84e+00 b.107.1.1,d.58.38.1 65335,65336 1sfkA 76 1.02e+01 a.190.1.1 105488 1pyoB 105 1.03e+01 1gmlA 178 1.06e+01 c.8.5.2 70273 1ofzA 312 1.06e+01 b.68.8.1 86978 1ew4A 106 1.20e+01 1ew4A d.82.2.1 40023 1tl9A 339 1.21e+01 1eueA 86 1.21e+01 1cyo d.120.1.1 59504 2f4qA 346 1.21e+01 1zin 217 1.29e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1m2dA 110 1.32e+01 c.47.1.11 78476 1uok 558 1.34e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1w4vA 119 1.38e+01 2bbeA 108 1.41e+01 1t0qC 86 1.61e+01 d.15.12.1 106222 1r3dA 264 1.62e+01 1zd7A 159 1.76e+01 1qsgA 265 1.76e+01 1eny c.2.1.2 29935 1n2sA 299 1.82e+01 c.2.1.2 79857 1ifqA 138 1.83e+01 1ifqA d.110.4.1 62350 1r5iD 216 1.85e+01 a.202.1.1 97091 2bl2A 156 1.85e+01 1orvA 728 1.89e+01 b.70.3.1,c.69.1.24 87354,87355 1u7gA 385 2.02e+01 f.44.1.1 107723 1gen 218 2.06e+01 1gen b.66.1.1 27536 2fztA 79 2.07e+01 2d0sA 79 2.07e+01 1cl1A 395 2.07e+01 1cl2A c.67.1.3 34395 2c4wA 176 2.11e+01 1rc6A 261 2.12e+01 b.82.1.11 97287 2drwA 363 2.12e+01 2d9bA 109 2.17e+01 1vhvA 268 2.17e+01 c.90.1.1 100704 2d83A 363 2.21e+01 1r6fA 310 2.22e+01 e.46.1.1 97149 1cmcA 104 2.23e+01 1cmbA a.43.1.5 17462 1oohA 126 2.28e+01 a.39.2.1 93383 1nt2A 210 2.29e+01 c.66.1.3 86149 1pa1A 310 2.32e+01 c.45.1.2 94404 1or7A 194 2.41e+01 a.4.13.2,a.177.1.1 87332,87333 1vs0A 310 2.42e+01 1woyA 500 2.43e+01 1uwsA 489 2.44e+01 c.1.8.4 108073 1unqA 125 2.44e+01 b.55.1.1 107968 1x1iA 752 2.44e+01 1u2eA 289 2.45e+01 1vgjA 184 2.46e+01 1rwzA 245 2.50e+01 d.131.1.2,d.131.1.2 98005,98006 2atzA 180 2.51e+01 2a1xA 308 2.52e+01 2fi1A 190 2.54e+01 1ux8A 132 2.66e+01 2fgqX 332 2.69e+01 2g7oA 70 2.72e+01 1o5zA 442 2.72e+01 c.59.1.2,c.72.2.2 92530,92531 1hztA 190 2.78e+01 1i9aA d.113.1.2 61459 2fueA 262 2.79e+01 1k82A 268 2.84e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2vsgA 358 2.85e+01 2vsgA h.4.1.1 45780 1bbzA 58 2.88e+01 1bbzA b.34.2.1 24477 2bt6A 108 2.96e+01 1hbnA 549 2.96e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1y60A 169 2.96e+01 1hm6A 346 2.98e+01 1avc a.65.1.1 18147 1zzgA 415 2.99e+01 1wdcB 156 3.01e+01 1wdcB a.39.1.5 17302 2au3A 407 3.15e+01 1oxjA 173 3.16e+01 a.60.1.2,a.118.1.13 87517,87518 1q60A 99 3.20e+01 1d3gA 367 3.27e+01 1d3gA c.1.4.1 28600 1im8A 244 3.28e+01 c.66.1.14 66212 1jkoC 52 3.31e+01 a.4.1.2 66809 1n0qA 93 3.35e+01 k.37.1.1 79754 2bsjA 133 3.35e+01 2f71A 298 3.36e+01 1aqcA 172 3.38e+01 1x11A b.55.1.2 26983 2d2yA 145 3.40e+01 2cglA 489 3.41e+01 1q2yA 140 3.46e+01 d.108.1.1 95655 1nswA 105 3.53e+01 c.47.1.1 92097 1u5uA 374 3.54e+01 1uwmA 106 3.59e+01 1t3yA 141 3.61e+01 1yz4A 160 3.62e+01 2g8jA 339 3.69e+01 1ihbA 162 3.70e+01 1bd8 d.211.1.1 19161 2f8yA 223 3.72e+01 1jvr 137 3.78e+01 1jvr a.61.1.2 18132 1p5zB 263 3.89e+01 c.37.1.1 87815 3proC 166 3.98e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1rybA 212 4.05e+01 c.56.3.1 98098 1t2dA 322 4.06e+01 c.2.1.5,d.162.1.1 99084,99085 2f4mB 61 4.07e+01 1szwA 379 4.25e+01 d.265.1.4 99047 2bfxA 284 4.33e+01 1lldA 319 4.36e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1zz1A 369 4.37e+01 2ad6A 571 4.42e+01 1wozA 177 4.54e+01 1nh1A 330 4.58e+01 e.45.1.1 91871 1y791 680 4.59e+01 1mc2A 122 4.61e+01 a.133.1.2 74622 1cjxA 357 4.69e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1puc 105 4.71e+01 1puc d.97.1.1 40675 2trxA 108 4.77e+01 1thx c.47.1.1 32719 1x42A 232 4.82e+01 1tzvA 142 4.87e+01 a.79.1.1 107526 2eu8A 216 5.01e+01 1itbB 315 5.11e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1fxxA 482 5.28e+01 1fxxA c.55.3.5 33726 1ogiA 303 5.28e+01 b.43.4.2,c.25.1.1 92914,92915 1je0A 236 5.28e+01 c.56.2.1 66581 1ie9A 259 5.29e+01 1db1A a.123.1.1 62318 1h05A 146 5.37e+01 c.23.13.1 76433 1g12A 167 5.46e+01 1ge5A d.92.1.12 60193 1e1oA 504 5.48e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2bi7A 384 5.53e+01 1gr0A 367 5.69e+01 c.2.1.3,d.81.1.3 70379,70380 1hyp 80 5.72e+01 1hyp a.52.1.1 17806 1llp 343 5.80e+01 1arv a.93.1.1 18578 1kk8B 139 5.87e+01 a.39.1.5 77430 1j2mA 99 5.87e+01 a.165.1.1 84018 2h79A 269 5.89e+01 1n00A 321 5.90e+01 a.65.1.1 85241 1q7lB 88 5.97e+01 1hz4A 373 6.04e+01 a.118.8.2 65960 1t0qA 498 6.08e+01 a.25.1.2 106220 2gncA 60 6.09e+01 1g6hA 257 6.32e+01 1gajA c.37.1.12 60318 2h7bA 105 6.34e+01 2fug7 129 6.39e+01 1r29A 127 6.40e+01 d.42.1.1 96856 1qpaA 345 6.41e+01 1arv a.93.1.1 18585 1ztsA 139 6.41e+01 1ve3A 227 6.50e+01 1wy1A 172 6.52e+01 1cs1A 386 6.53e+01 1ibjA c.67.1.3 34399 2bmwA 304 6.60e+01 1tz0A 114 6.68e+01 d.58.4.5 107463 1kthA 58 6.77e+01 g.8.1.1 68863 1ek9A 428 6.78e+01 1ek9A f.5.1.1 43809 2f57A 317 6.80e+01 2ajuL 216 6.80e+01 1djtA 64 6.95e+01 1aho g.3.7.1 44132 1icpA 376 7.05e+01 1oyc c.1.4.1 62270 1io7A 368 7.06e+01 1f4tA a.104.1.1 18971 2c5qA 240 7.07e+01 2aq2B 237 7.11e+01 1bqbA 301 7.16e+01 1hyt d.92.1.2 58962 1olmA 403 7.22e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1t00A 112 7.24e+01 1t6aA 126 7.28e+01 d.129.8.1 106555 1fpzA 212 7.31e+01 1fpzA c.45.1.1 59976 1q35A 320 7.39e+01 c.94.1.1 95661 1thx 115 7.43e+01 1thx c.47.1.1 32732 2fdsA 352 7.46e+01 1qhtA 775 7.51e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1v9sA 208 7.53e+01 1a59 378 7.63e+01 1aj8A a.103.1.1 18902 1v54E 109 7.64e+01 a.118.11.1 100326 1reqB 637 7.65e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1zt2B 212 7.68e+01 1k0mA 241 7.74e+01 a.45.1.1,c.47.1.5 67949,67950 2gk9A 426 7.84e+01 1y4lA 121 7.95e+01 2bhoA 130 7.97e+01 1khqA 212 8.00e+01 d.3.1.1 90964 1qsaA 618 8.04e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 7taa 478 8.16e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1yyqA 374 8.21e+01 1j98A 157 8.43e+01 1j98A d.185.1.2 62755 1f0nA 285 8.43e+01 1dqyA c.69.1.3 34636 3psg 370 8.50e+01 1smrA b.50.1.2 26841 1yjsA 419 8.55e+01 2mag 24 8.58e+01 j.4.1.1 46075 1ay7B 89 8.60e+01 1ay7B c.9.1.1 30836 1f7zA 233 8.66e+01 5ptp b.47.1.2 59681 2a33A 215 8.80e+01 1h7cA 108 8.86e+01 a.7.5.1 70914 1r0pA 312 8.87e+01 d.144.1.7 96734