# List of top-scoring protein chains for t06-100-30-n_sep-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ow4A 129 1.22e-01 a.39.2.1 93628 1zcjA 463 3.17e-01 2c46A 241 3.50e-01 1ym3A 215 7.28e-01 2d0sA 79 1.15e+00 2fbqA 235 1.70e+00 1dmhA 311 2.02e+00 1dmhA b.3.6.1 22633 2clbA 188 2.51e+00 1zbsA 291 2.74e+00 1eexA 554 2.83e+00 1dioA c.1.19.3 29650 1ifqA 138 2.93e+00 1ifqA d.110.4.1 62350 1sfkA 76 3.53e+00 a.190.1.1 105488 1h3gA 601 4.52e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2cmwA 310 4.88e+00 1sumB 235 5.21e+00 a.7.12.1 106025 1z67A 135 5.71e+00 1ysrA 150 6.00e+00 1u5uA 374 6.15e+00 1irdA 141 6.62e+00 a.1.1.2 66286 1orvA 728 6.87e+00 b.70.3.1,c.69.1.24 87354,87355 1ojrA 274 7.32e+00 c.74.1.1 93147 1cpq 129 9.99e+00 1cpq a.24.3.2 16556 1nt2A 210 1.01e+01 c.66.1.3 86149 1t1vA 93 1.04e+01 c.47.1.14 106278 1m9xC 146 1.18e+01 a.73.1.1 84907 1khbA 625 1.20e+01 c.91.1.1,c.109.1.1 68606,68607 1tp6A 128 1.20e+01 d.17.4.12 107184 1d3gA 367 1.21e+01 1d3gA c.1.4.1 28600 1ua4A 455 1.29e+01 c.72.1.3 99128 1woyA 500 1.37e+01 1cmcA 104 1.38e+01 1cmbA a.43.1.5 17462 1hx1B 114 1.45e+01 1hx1B a.7.7.1 61350 1e0eA 55 1.47e+01 1wjcA a.4.10.1 59147 1r6xA 395 1.51e+01 b.122.1.3,c.26.1.5 97167,97168 1ylmA 144 1.59e+01 2d2yA 145 1.59e+01 1xzoA 174 1.60e+01 1qsgA 265 1.70e+01 1eny c.2.1.2 29935 1zowA 313 1.72e+01 1hztA 190 1.81e+01 1i9aA d.113.1.2 61459 1gw5S 142 1.82e+01 d.110.4.2 70633 1puc 105 1.85e+01 1puc d.97.1.1 40675 1xmpA 170 1.92e+01 1djtA 64 1.95e+01 1aho g.3.7.1 44132 1fxxA 482 2.00e+01 1fxxA c.55.3.5 33726 1mun 225 2.15e+01 1mun a.96.1.2 18744 2a7kA 250 2.25e+01 1i7hA 111 2.25e+01 d.15.4.1 71122 2bsjA 133 2.30e+01 2bbeA 108 2.33e+01 1ix9A 205 2.40e+01 a.2.11.1,d.44.1.1 76899,76900 1cxzB 86 2.45e+01 1cxzB a.2.6.1 15705 1v9sA 208 2.57e+01 1ypqA 135 2.60e+01 2a1xA 308 2.72e+01 1reqA 727 2.91e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1d4aA 273 3.00e+01 1d4aA c.23.5.3 31219 1o8vA 134 3.01e+01 b.60.1.2 86680 2herA 368 3.07e+01 1yd9A 193 3.24e+01 1nd4A 264 3.44e+01 d.144.1.6 91815 1g8kB 133 3.45e+01 1g8jB b.33.1.1 24435 1n0qA 93 3.49e+01 k.37.1.1 79754 2b0cA 206 3.56e+01 2ixiA 184 3.56e+01 1qwgA 251 3.67e+01 c.1.27.1 96473 2btcI 29 3.78e+01 g.3.2.1 44070 2g2dA 193 3.78e+01 2gk9A 426 3.87e+01 2gupA 292 3.87e+01 2d5xA 141 3.87e+01 1s6cA 183 3.93e+01 a.39.1.5 98594 2c4jA 218 4.19e+01 1bbzA 58 4.25e+01 1bbzA b.34.2.1 24477 1zelA 298 4.25e+01 1yz1A 174 4.28e+01 2f4mB 61 4.34e+01 2d9bA 109 4.36e+01 1ijtA 128 4.47e+01 1bfg b.42.1.1 62510 1amuA 563 4.48e+01 1amuA e.23.1.1 43351 1k0mA 241 4.51e+01 a.45.1.1,c.47.1.5 67949,67950 1s8nA 205 4.51e+01 c.23.1.1 105374 2aa4A 289 4.52e+01 2bl2A 156 4.57e+01 1ykiA 217 4.58e+01 1sqhA 312 4.61e+01 d.108.1.5 98966 1ie9A 259 4.62e+01 1db1A a.123.1.1 62318 1xb2B 291 4.70e+01 2gasA 307 4.71e+01 1gtmA 419 4.95e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1t9iA 163 4.96e+01 1sd4A 126 4.98e+01 a.4.5.39 105428 1u3dA 509 4.99e+01 a.99.1.1,c.28.1.1 107638,107639 1mwvA 714 5.03e+01 a.93.1.3,a.93.1.3 85161,85162 1umgA 362 5.04e+01 d.280.1.1 107956 1xrtA 467 5.07e+01 1x1nA 524 5.13e+01 1ucpA 91 5.29e+01 a.77.1.5 99186 2f4qA 346 5.32e+01 1uh4A 637 5.32e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2f8yA 223 5.44e+01 1z2nX 324 5.49e+01 1l5oA 356 5.49e+01 c.39.1.1 77711 1o57A 291 5.52e+01 a.4.5.40,c.61.1.1 92483,92484 2cohA 202 5.52e+01 1n00A 321 5.54e+01 a.65.1.1 85241 1xszA 356 5.55e+01 1uok 558 5.58e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1qw9A 502 5.65e+01 b.71.1.2,c.1.8.3 96466,96467 1q4gA 553 5.73e+01 a.93.1.2,g.3.11.1 95789,95790 1v58A 241 5.75e+01 c.47.1.9,d.17.3.1 108371,108372 1mw9X 592 5.77e+01 e.10.1.1 91480 1elvA 333 5.80e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1vhoA 346 5.82e+01 b.49.3.1,c.56.5.4 100694,100695 1ji1A 637 5.85e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1i3zA 103 5.92e+01 d.93.1.1 83667 1q4uA 151 5.94e+01 d.38.1.5 95828 1or7A 194 5.97e+01 a.4.13.2,a.177.1.1 87332,87333 1t2dA 322 5.97e+01 c.2.1.5,d.162.1.1 99084,99085 1wdcB 156 5.98e+01 1wdcB a.39.1.5 17302 1h7cA 108 6.01e+01 a.7.5.1 70914 2b69A 343 6.03e+01 1zzgA 415 6.05e+01 1t0qC 86 6.14e+01 d.15.12.1 106222 1xj4A 119 6.16e+01 1cjxA 357 6.18e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1gmlA 178 6.18e+01 c.8.5.2 70273 1gz8A 299 6.19e+01 d.144.1.7 83405 2gwnA 452 6.29e+01 1mba 147 6.30e+01 2fal a.1.1.2 15149 1x8hA 228 6.32e+01 2bhoA 130 6.48e+01 2au3A 407 6.49e+01 1heiA 451 6.51e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 2aq2B 237 6.66e+01 1jd1A 129 6.66e+01 1qu9A d.79.1.1 62890 2f69A 261 6.70e+01 1xkmB 25 6.70e+01 1kblA 873 6.78e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1upvA 257 6.79e+01 1x6iA 91 6.93e+01 1iapA 211 6.99e+01 a.91.1.1 62119 1y9bA 90 7.08e+01 1ii5A 233 7.08e+01 c.94.1.1 62412 1kf6D 119 7.19e+01 f.21.2.2 72400 1q35A 320 7.19e+01 c.94.1.1 95661 1w6nA 134 7.29e+01 1lu0A 29 7.41e+01 g.3.2.1 74255 1x8gA 227 7.42e+01 1jvr 137 7.44e+01 1jvr a.61.1.2 18132 1pyoB 105 7.48e+01 1zkiA 133 7.49e+01 2f94F 350 7.49e+01 2c5uA 375 7.51e+01 1whsA 255 7.52e+01 1ivyA c.69.1.5 34649 1szwA 379 7.55e+01 d.265.1.4 99047 1pinA 163 7.58e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 2gncA 60 7.63e+01 1q7sA 117 7.64e+01 c.131.1.1 96055 1zt2B 212 7.66e+01 1k3yA 221 7.71e+01 a.45.1.1,c.47.1.5 77245,77246 1ojhA 65 7.71e+01 a.214.1.1 103976 1t0qA 498 7.72e+01 a.25.1.2 106220 1n6aA 259 7.78e+01 b.76.2.1,b.85.7.1 80121,80122 2gkpA 167 7.81e+01 1ztsA 139 7.84e+01 2sqcA 631 7.86e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1n46A 258 7.92e+01 a.123.1.1 85315 1m2xA 223 8.00e+01 d.157.1.1 84764 1x91A 153 8.04e+01 2b6dA 345 8.10e+01 2eucA 130 8.11e+01 1ywwA 85 8.11e+01 1r6fA 310 8.17e+01 e.46.1.1 97149 1uwmA 106 8.34e+01 1j1vA 94 8.41e+01 a.4.12.2 83981 2c30A 321 8.43e+01 1knyA 253 8.46e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1vp7A 100 8.49e+01 1ycsB 239 8.59e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 2d83A 363 8.69e+01 1pzgA 331 8.70e+01 c.2.1.5,d.162.1.1 95425,95426 1ypvA 313 8.72e+01 1ds1A 324 8.72e+01 1drtA b.82.2.2 28127 2bwbA 46 8.84e+01 1wudA 89 8.89e+01 2drwA 363 8.92e+01 1wv2A 265 8.92e+01 2fug1 438 8.95e+01