# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nnfA 309 2.79e-01 c.94.1.1 85903 1xc1A 309 1.27e+00 c.94.1.1 109543 2fymA 431 1.39e+00 1hqsA 423 1.50e+00 1iso c.77.1.1 61154 1jmuB 666 1.98e+00 2a67A 167 2.75e+00 1ox0A 430 2.77e+00 c.95.1.1,c.95.1.1 87495,87496 2gk9A 426 2.83e+00 1j79A 347 2.83e+00 1j79A c.1.9.4 62675 2fpqA 444 3.11e+00 1k2xB 143 3.42e+00 1wdcB 156 4.28e+00 1wdcB a.39.1.5 17302 1jftA 340 4.64e+00 a.35.1.5,c.93.1.1 66652,66653 1l1qA 186 4.80e+00 c.61.1.1 77653 1ypyA 184 5.24e+00 1vb3A 428 5.29e+00 1zbsA 291 5.63e+00 1h1nA 305 6.37e+00 c.1.8.3 70855 1ow4A 129 6.54e+00 a.39.2.1 93628 1c0pA 363 6.81e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 2vsgA 358 7.35e+00 2vsgA h.4.1.1 45780 1wb0A 445 8.36e+00 1gycA 499 8.46e+00 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2bhuA 602 8.89e+00 1mxgA 435 8.92e+00 b.71.1.1,c.1.8.1 85193,85194 1d8wA 426 8.99e+00 1de5A c.1.15.2 29394 1w1oA 534 9.29e+00 d.58.32.4,d.145.1.1 109071,109072 1sat 471 9.32e+00 1sat b.80.7.1,d.92.1.6 28014,40300 2ceyA 306 9.63e+00 1vlyA 338 9.79e+00 b.44.2.1,d.250.1.1 108871,108872 1yozA 116 1.04e+01 2f6kA 307 1.09e+01 1ffyA 917 1.12e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1j6wA 175 1.23e+01 1j98A d.185.1.2 62663 1w7jA 795 1.28e+01 1mqeA 207 1.30e+01 d.113.1.1 91394 1z9tA 255 1.39e+01 1mrg 263 1.40e+01 1mrj d.165.1.1 42183 1bvoA 175 1.42e+01 1a3qA b.2.5.3 22457 1sq5A 308 1.43e+01 c.37.1.6 105882 1ym3A 215 1.46e+01 2av4A 162 1.52e+01 2apxA 112 1.53e+01 1b65A 375 1.55e+01 1b65A d.154.1.1 42020 1b0uA 262 1.58e+01 1b0uA c.37.1.12 32370 1pv1A 299 1.64e+01 1d2tA 231 1.67e+01 1d2tA a.111.1.1 19052 1c1lA 136 1.73e+01 1c1lA b.29.1.3 24219 1qe3A 489 1.81e+01 2bce c.69.1.1 34630 1vs0A 310 1.89e+01 1jdw 423 1.90e+01 1jdw d.126.1.2 41129 1apyB 141 1.91e+01 1apyB 2fbwB 252 1.99e+01 1quuA 250 2.05e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1k1aA 241 2.07e+01 d.211.1.1 67992 1g8aA 227 2.09e+01 c.66.1.3 90506 1pgtA 210 2.12e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1gr0A 367 2.14e+01 c.2.1.3,d.81.1.3 70379,70380 1exrA 148 2.16e+01 1cll a.39.1.5 17299 1nbwA 607 2.21e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1rypK 198 2.26e+01 d.153.1.4 41879 1vemA 516 2.31e+01 2fi1A 190 2.33e+01 1hj9A 226 2.33e+01 b.47.1.2 65845 1i19A 561 2.44e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1gmuA 143 2.51e+01 b.107.1.1,d.58.38.1 65335,65336 1rlr 761 2.52e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1ie9A 259 2.54e+01 1db1A a.123.1.1 62318 1ea7A 310 2.56e+01 c.41.1.1 70086 2ab5A 269 2.58e+01 2d0oA 610 2.59e+01 1qfhA 212 2.61e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1l6sA 323 2.62e+01 c.1.10.3 73627 1gppA 237 2.77e+01 b.86.1.2 76262 1lrzA 426 2.80e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1pe9A 361 2.80e+01 b.80.1.1 94595 1lycA 343 2.91e+01 a.93.1.1 74344 1du3A 130 2.91e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 1d4aA 273 2.93e+01 1d4aA c.23.5.3 31219 1hyoA 421 2.95e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1bdfA 235 2.96e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1ogdA 131 2.96e+01 c.133.1.1 92893 1wdpA 495 2.98e+01 1tqnA 486 2.98e+01 a.104.1.1 107238 1hl9A 449 3.05e+01 b.71.1.3,c.1.8.11 90650,90651 1ia8A 289 3.08e+01 1ia8A d.144.1.7 62112 1lf6A 684 3.10e+01 a.102.1.5,b.30.5.5 77918,77919 1qnaA 200 3.13e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1gtkA 313 3.14e+01 c.94.1.1,d.50.2.1 76346,76347 1vkhA 273 3.16e+01 c.69.1.32 108662 1zgdA 312 3.23e+01 1rxwA 336 3.26e+01 a.60.7.1,c.120.1.2 98059,98060 2furA 209 3.35e+01 2sak 121 3.42e+01 2sak d.15.5.1 37711 1zk7A 467 3.43e+01 1dzlA 505 3.46e+01 1dzlA b.121.6.1 23586 1hc7A 477 3.48e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1noyA 388 3.49e+01 1clqA c.55.3.5 33713 1arb 268 3.52e+01 1arb b.47.1.1 25766 2b8mA 117 3.57e+01 1kqfB 294 3.58e+01 d.58.1.5,f.23.22.1 75900,75901 1lam 484 3.61e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1p30A 952 3.68e+01 b.121.2.2,b.121.2.2 93964,93965 1yydA 357 3.69e+01 2b99A 156 3.70e+01 1ysrA 150 3.71e+01 1jc4A 148 3.78e+01 1jc4A d.32.1.4 62863 1v9mA 323 3.85e+01 f.40.1.1 100543 1nq7A 244 3.87e+01 a.123.1.1 92047 1sumB 235 3.91e+01 a.7.12.1 106025 1d2nA 272 3.95e+01 1d2nA c.37.1.20 32428 1mijA 152 3.99e+01 a.4.1.1 79150 1y13A 181 4.02e+01 1e4mM 501 4.05e+01 1e70M c.1.8.4 59226 2ganA 190 4.10e+01 1ylmA 144 4.11e+01 1hzdA 272 4.16e+01 c.14.1.3 65969 1qhoA 686 4.30e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1musA 477 4.31e+01 c.55.3.4 79494 2eu9A 355 4.41e+01 1q8rA 120 4.44e+01 d.79.6.1 96225 1f8eA 388 4.45e+01 2qwc b.68.1.1 59694 1sc6A 404 4.49e+01 1xcrA 316 4.57e+01 1aoeA 192 4.59e+01 1aoeA c.71.1.1 34923 1cjaA 342 4.60e+01 1cjaA d.144.1.3 41708 1zc6A 305 4.62e+01 1rg9A 383 4.62e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1y0zA 330 4.62e+01 1q4uA 151 4.67e+01 d.38.1.5 95828 2f3yA 148 4.68e+01 1j2zA 270 4.69e+01 b.81.1.1 90805 2g8mA 264 4.69e+01 1y07A 128 4.72e+01 1d4xG 126 4.72e+01 1d0nA d.109.1.1 59109 1bu8A 452 4.74e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1ku0A 388 4.77e+01 c.69.1.18 72994 2gakA 391 4.79e+01 1y8aA 332 4.79e+01 1ig8A 486 4.81e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1cvrA 435 4.81e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1d3gA 367 4.86e+01 1d3gA c.1.4.1 28600 1gefA 123 4.92e+01 1gefA c.52.1.18 60465 1p32A 209 5.02e+01 1p32A d.25.1.1 38379 2gnpA 266 5.03e+01 1u04A 771 5.04e+01 b.34.14.1,c.55.3.10 107539,107540 1nn6A 228 5.05e+01 b.47.1.2 85893 1llp 343 5.12e+01 1arv a.93.1.1 18578 1fl0A 171 5.13e+01 1eujA b.40.4.4 25315 1nf2A 268 5.19e+01 c.108.1.10 91849 1f0nA 285 5.20e+01 1dqyA c.69.1.3 34636 1nu5A 370 5.21e+01 c.1.11.2,d.54.1.1 92183,92184 1xrtA 467 5.22e+01 1kwgA 645 5.31e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ni4A 365 5.35e+01 c.36.1.11 85728 1on3A 523 5.36e+01 c.14.1.4,c.14.1.4 87107,87108 1qf5A 431 5.37e+01 1adeA c.37.1.10 32212 1gox 370 5.45e+01 1gox c.1.4.1 28607 2atzA 180 5.48e+01 1ve3A 227 5.48e+01 1aqzA 149 5.56e+01 1aqzA d.1.1.3 36238 1xkpC 143 5.60e+01 1vfgA 390 5.74e+01 a.173.1.1,d.218.1.4 108570,108571 1wlsA 328 5.81e+01 1ad2 228 5.93e+01 1ad2 e.24.1.1 43353 2bwvA 440 5.94e+01 1j09A 468 5.94e+01 a.97.1.1,c.26.1.1 77025,77026 1gj7B 253 5.96e+01 1cmcA 104 5.99e+01 1cmbA a.43.1.5 17462 2cduA 452 6.01e+01 1y8qB 640 6.04e+01 1nthA 458 6.25e+01 c.1.25.1 80730 2a77H 222 6.26e+01 1q8yA 373 6.33e+01 d.144.1.7 96234 1rv9A 259 6.34e+01 d.194.1.2 105105 1rvkA 382 6.36e+01 c.1.11.2,d.54.1.1 97928,97929 2bklA 695 6.42e+01 1z90A 469 6.44e+01 1ajsA 412 6.47e+01 1ajsA c.67.1.1 34276 1zd7A 159 6.49e+01 1pn0A 665 6.68e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2a1kA 233 6.75e+01 2cb2A 318 6.77e+01 1jhdA 396 6.93e+01 b.122.1.3,c.26.1.5 66712,66713 1tp9A 162 7.16e+01 1cl8A 276 7.18e+01 1ckqA c.52.1.1 33230 1jf9A 408 7.19e+01 1c0nA c.67.1.3 62931 1qtqA 553 7.19e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1b5qA 472 7.31e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1fobA 334 7.34e+01 c.1.8.3 83255 2bdeA 470 7.35e+01 1ejeA 192 7.37e+01 1ejeA b.45.1.2 25757 2d0iA 333 7.40e+01 2a1fA 247 7.44e+01 2clbA 188 7.44e+01 2cqsA 842 7.48e+01 2bghA 421 7.49e+01 2cf8H 257 7.53e+01 2dkaA 544 7.56e+01 1aisA 182 7.56e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1l5oA 356 7.57e+01 c.39.1.1 77711 3tmkA 216 7.61e+01 3tmkA c.37.1.1 31920 1kk8B 139 7.61e+01 a.39.1.5 77430 1s5aA 150 7.63e+01 d.17.4.10 98525 1hbnB 442 7.65e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1j9lA 247 7.74e+01 c.106.1.1 62762 1x8hA 228 7.82e+01 1x8gA 227 7.85e+01 1ru3A 732 7.86e+01 e.26.1.3 97835 1rdqE 350 7.88e+01 d.144.1.7 97314 2cwsA 237 7.89e+01 1l9kA 305 7.99e+01 c.66.1.25 84569 1vr7A 142 8.03e+01 1h3fA 432 8.21e+01 c.26.1.1,d.66.1.4 76631,76632 2bsxA 253 8.21e+01 2essA 248 8.22e+01 1j7gA 144 8.27e+01 c.110.1.1 84130 1wozA 177 8.28e+01 1mun 225 8.38e+01 1mun a.96.1.2 18744 1r62A 160 8.41e+01 d.122.1.3 104816 1jakA 512 8.44e+01 c.1.8.6,d.92.2.1 66472,66473 1ux5A 411 8.49e+01 a.207.1.1 100144 1fehA 574 8.51e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1ms9A 648 8.52e+01 b.29.1.15,b.68.1.1 85088,85089 1hn0A 1021 8.63e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1zkiA 133 8.76e+01 1knyA 253 8.81e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1pzgA 331 8.81e+01 c.2.1.5,d.162.1.1 95425,95426 1pl8A 356 8.85e+01 b.35.1.2,c.2.1.1 94878,94879