# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2c46A 241 4.96e-01 1r6xA 395 7.99e-01 b.122.1.3,c.26.1.5 97167,97168 2herA 368 2.08e+00 2g0qA 173 2.33e+00 1dmhA 311 2.66e+00 1dmhA b.3.6.1 22633 1i7hA 111 2.85e+00 d.15.4.1 71122 1ypqA 135 3.65e+00 1ysrA 150 3.70e+00 1zejA 293 3.76e+00 1zbsA 291 3.91e+00 2clbA 188 4.53e+00 1ym3A 215 6.29e+00 2d0sA 79 6.86e+00 1sfkA 76 7.75e+00 a.190.1.1 105488 1ylmA 144 7.95e+00 1d3gA 367 8.88e+00 1d3gA c.1.4.1 28600 1ifqA 138 1.13e+01 1ifqA d.110.4.1 62350 1ucpA 91 1.25e+01 a.77.1.5 99186 2c4jA 218 1.29e+01 1eexA 554 1.31e+01 1dioA c.1.19.3 29650 1r9kA 172 1.55e+01 a.168.1.1 104869 1s6cA 183 1.59e+01 a.39.1.5 98594 1cmcA 104 1.64e+01 1cmbA a.43.1.5 17462 1zcjA 463 1.69e+01 1sumB 235 1.93e+01 a.7.12.1 106025 1gzsB 165 2.21e+01 a.168.1.1 76425 1ow4A 129 2.25e+01 a.39.2.1 93628 1t0qC 86 2.42e+01 d.15.12.1 106222 1ofzA 312 2.58e+01 b.68.8.1 86978 1kqfC 217 2.58e+01 f.21.1.1 72874 2cohA 202 2.58e+01 1x3xA 82 2.66e+01 1gmuA 143 2.99e+01 b.107.1.1,d.58.38.1 65335,65336 1amuA 563 3.26e+01 1amuA e.23.1.1 43351 2a1xA 308 3.29e+01 1eueA 86 3.34e+01 1cyo d.120.1.1 59504 1yzqA 170 3.40e+01 1xzoA 174 3.51e+01 1gmlA 178 3.65e+01 c.8.5.2 70273 1t1vA 93 3.73e+01 c.47.1.14 106278 1bqbA 301 3.93e+01 1hyt d.92.1.2 58962 1jvr 137 3.95e+01 1jvr a.61.1.2 18132 1djtA 64 3.99e+01 1aho g.3.7.1 44132 2fbqA 235 4.49e+01 1heiA 451 4.56e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1xmpA 170 4.64e+01 1gr0A 367 4.86e+01 c.2.1.3,d.81.1.3 70379,70380 2cmwA 310 4.89e+01 2ge7A 108 4.91e+01 1wozA 177 5.19e+01 1z4eA 153 5.19e+01 1r0pA 312 5.22e+01 d.144.1.7 96734 1j2mA 99 5.41e+01 a.165.1.1 84018 1mun 225 5.50e+01 1mun a.96.1.2 18744 2g8lA 299 5.53e+01 1u5uA 374 5.59e+01 1gox 370 5.76e+01 1gox c.1.4.1 28607 1t3yA 141 5.81e+01 1io7A 368 5.82e+01 1f4tA a.104.1.1 18971 1kk8B 139 6.01e+01 a.39.1.5 77430 1hztA 190 6.06e+01 1i9aA d.113.1.2 61459 1x52A 124 6.09e+01 1qw9A 502 6.13e+01 b.71.1.2,c.1.8.3 96466,96467 1zt2B 212 6.17e+01 2ddfA 257 6.27e+01 1khbA 625 6.30e+01 c.91.1.1,c.109.1.1 68606,68607 1bdb 277 6.33e+01 1bdb c.2.1.2 29874 2h88C 140 6.37e+01 1ojrA 274 6.43e+01 c.74.1.1 93147 1u7gA 385 6.64e+01 f.44.1.1 107723 1ua4A 455 6.82e+01 c.72.1.3 99128 1zd7A 159 6.85e+01 1wdcB 156 6.92e+01 1wdcB a.39.1.5 17302 2gk9A 426 7.04e+01 1hyp 80 7.17e+01 1hyp a.52.1.1 17806 2d2yA 145 7.35e+01 1wwuA 99 7.43e+01 2d9bA 109 7.49e+01 1vj0A 380 7.76e+01 b.35.1.2,c.2.1.1 100786,100787 1kthA 58 7.82e+01 g.8.1.1 68863 1e0eA 55 7.89e+01 1wjcA a.4.10.1 59147 2ca6A 386 8.18e+01 1t2dA 322 8.24e+01 c.2.1.5,d.162.1.1 99084,99085 1vp7A 100 8.41e+01 1w4vA 119 8.53e+01 7taa 478 8.73e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1szwA 379 8.91e+01 d.265.1.4 99047 1dqzA 280 8.98e+01 1dqyA c.69.1.3 34638