# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i7hA 111 4.23e-01 d.15.4.1 71122 1r6xA 395 5.91e-01 b.122.1.3,c.26.1.5 97167,97168 1x3xA 82 8.77e-01 1dmhA 311 9.06e-01 1dmhA b.3.6.1 22633 1ypqA 135 1.05e+00 2c46A 241 1.58e+00 1kqfC 217 1.91e+00 f.21.1.1 72874 2akaB 299 2.13e+00 1d3gA 367 2.51e+00 1d3gA c.1.4.1 28600 2g0qA 173 3.22e+00 1zejA 293 3.24e+00 1ym3A 215 3.33e+00 1s6cA 183 3.61e+00 a.39.1.5 98594 1ow4A 129 4.13e+00 a.39.2.1 93628 1ysrA 150 4.25e+00 1zbsA 291 4.39e+00 2clbA 188 4.82e+00 1ylmA 144 5.32e+00 1xzoA 174 5.52e+00 1l5oA 356 6.38e+00 c.39.1.1 77711 1sfkA 76 6.60e+00 a.190.1.1 105488 2d0sA 79 7.54e+00 1sumB 235 7.80e+00 a.7.12.1 106025 1vp6A 138 8.33e+00 2a1xA 308 8.34e+00 1t0qC 86 9.15e+00 d.15.12.1 106222 2herA 368 1.08e+01 1u7gA 385 1.09e+01 f.44.1.1 107723 1gmuA 143 1.11e+01 b.107.1.1,d.58.38.1 65335,65336 1f7zA 233 1.14e+01 5ptp b.47.1.2 59681 1vj0A 380 1.14e+01 b.35.1.2,c.2.1.1 100786,100787 1ucpA 91 1.19e+01 a.77.1.5 99186 1cmcA 104 1.29e+01 1cmbA a.43.1.5 17462 1uok 558 1.31e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1eueA 86 1.39e+01 1cyo d.120.1.1 59504 1eexA 554 1.42e+01 1dioA c.1.19.3 29650 1t1vA 93 1.44e+01 c.47.1.14 106278 1ifqA 138 1.51e+01 1ifqA d.110.4.1 62350 1gr0A 367 1.54e+01 c.2.1.3,d.81.1.3 70379,70380 1gmlA 178 1.62e+01 c.8.5.2 70273 1d4aA 273 1.74e+01 1d4aA c.23.5.3 31219 2c4jA 218 1.98e+01 1bqbA 301 2.03e+01 1hyt d.92.1.2 58962 1irdA 141 2.03e+01 a.1.1.2 66286 1p5zB 263 2.09e+01 c.37.1.1 87815 1m2dA 110 2.12e+01 c.47.1.11 78476 2ge7A 108 2.13e+01 2bsjA 133 2.16e+01 1uwsA 489 2.18e+01 c.1.8.4 108073 1puc 105 2.21e+01 1puc d.97.1.1 40675 1q4uA 151 2.23e+01 d.38.1.5 95828 1pyoB 105 2.25e+01 1t2dA 322 2.29e+01 c.2.1.5,d.162.1.1 99084,99085 1kblA 873 2.31e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1khbA 625 2.39e+01 c.91.1.1,c.109.1.1 68606,68607 1hj9A 226 2.43e+01 b.47.1.2 65845 2gz4A 207 2.44e+01 1r0pA 312 2.45e+01 d.144.1.7 96734 1gzsB 165 2.52e+01 a.168.1.1 76425 1zd7A 159 2.55e+01 1zcjA 463 2.56e+01 1ir6A 424 2.57e+01 c.107.1.2 71342 1jvr 137 2.59e+01 1jvr a.61.1.2 18132 1s83A 223 2.71e+01 b.47.1.2 98718 1hbnA 549 2.78e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1j2mA 99 2.79e+01 a.165.1.1 84018 1zowA 313 2.80e+01 2a31A 223 2.83e+01 2ddfA 257 2.94e+01 1zm7A 230 3.01e+01 2d2yA 145 3.04e+01 2d9bA 109 3.13e+01 1z4eA 153 3.24e+01 1z2nX 324 3.38e+01 1r9kA 172 3.48e+01 a.168.1.1 104869 1va6A 518 3.51e+01 1vr5A 547 3.52e+01 1ua4A 455 3.52e+01 c.72.1.3 99128 1q60A 99 3.57e+01 2gk9A 426 3.61e+01 1kv0A 66 3.66e+01 g.3.7.1 91040 7taa 478 3.67e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1n46A 258 3.68e+01 a.123.1.1 85315 1zkiA 133 3.70e+01 1h9hE 223 3.71e+01 b.47.1.2 103810 1v4vA 376 3.87e+01 c.87.1.3 100313 2b2nA 344 3.91e+01 1wwuA 99 3.96e+01 1mucA 373 3.96e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1dpo 223 4.00e+01 5ptp b.47.1.2 25975 1nt2A 210 4.11e+01 c.66.1.3 86149 1nmoA 247 4.22e+01 c.135.1.1 91980 1oxjA 173 4.24e+01 a.60.1.2,a.118.1.13 87517,87518 2dkaA 544 4.25e+01 2h79A 269 4.46e+01 2btcI 29 4.50e+01 g.3.2.1 44070 2nacA 393 4.59e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 2d4qA 257 4.60e+01 1rybA 212 4.61e+01 c.56.3.1 98098 1elvA 333 4.64e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1u5uA 374 4.66e+01 1gox 370 4.69e+01 1gox c.1.4.1 28607 1fobA 334 4.79e+01 c.1.8.3 83255 1ew4A 106 4.83e+01 1ew4A d.82.2.1 40023 1woyA 500 5.07e+01 1uwmA 106 5.10e+01 1whsA 255 5.12e+01 1ivyA c.69.1.5 34649 1ddjA 247 5.37e+01 5ptp b.47.1.2 26362 1tx9A 151 5.39e+01 1zzgA 415 5.54e+01 1hyp 80 5.74e+01 1hyp a.52.1.1 17806 2atzA 180 5.82e+01 1vhoA 346 5.89e+01 b.49.3.1,c.56.5.4 100694,100695 1zp4A 304 5.93e+01 1or7A 194 5.94e+01 a.4.13.2,a.177.1.1 87332,87333 2d83A 363 5.98e+01 2drwA 363 5.98e+01 1lu0A 29 6.09e+01 g.3.2.1 74255 1y9bA 90 6.14e+01 1pfvA 551 6.16e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1m2xA 223 6.16e+01 d.157.1.1 84764 1gcqC 70 6.24e+01 1gcpA b.34.2.1 60436 2bhoA 130 6.25e+01 1v9sA 208 6.26e+01 2coeA 120 6.29e+01 2g8lA 299 6.40e+01 1w4vA 119 6.43e+01 2bt6A 108 6.44e+01 1gsa 316 6.46e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1xmpA 170 6.49e+01 1djtA 64 6.51e+01 1aho g.3.7.1 44132 1l6rA 227 6.54e+01 c.108.1.10 77768 1mun 225 6.70e+01 1mun a.96.1.2 18744 1bb9 115 6.71e+01 1bb9 b.34.2.1 24554 1yseA 141 6.71e+01 1kk8B 139 6.84e+01 a.39.1.5 77430 1zt2B 212 7.04e+01 1fxxA 482 7.13e+01 1fxxA c.55.3.5 33726 1lam 484 7.18e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1knyA 253 7.31e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2a2lA 145 7.40e+01 1xrtA 467 7.50e+01 1amuA 563 7.59e+01 1amuA e.23.1.1 43351 2eucA 130 7.64e+01 1j96A 323 7.69e+01 c.1.7.1 71616 1ip9A 85 7.71e+01 1ip9A d.15.2.2 62638 1v58A 241 7.71e+01 c.47.1.9,d.17.3.1 108371,108372 1qsgA 265 7.74e+01 1eny c.2.1.2 29935 1tzvA 142 7.78e+01 a.79.1.1 107526 1qw9A 502 7.83e+01 b.71.1.2,c.1.8.3 96466,96467 2cw9A 194 8.00e+01 1oohA 126 8.03e+01 a.39.2.1 93383 1vp7A 100 8.13e+01 1y8qB 640 8.14e+01 1hx1B 114 8.18e+01 1hx1B a.7.7.1 61350 1ijtA 128 8.22e+01 1bfg b.42.1.1 62510 2cmwA 310 8.28e+01 1qazA 351 8.28e+01 1qazA a.102.3.1 18848 1e0eA 55 8.35e+01 1wjcA a.4.10.1 59147 2ajuL 216 8.40e+01 1ztsA 139 8.50e+01 1ie9A 259 8.54e+01 1db1A a.123.1.1 62318 1tdzA 272 8.64e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1dozA 309 8.65e+01 1ak1 c.92.1.1 35592 2cohA 202 8.68e+01 1s1pA 331 8.74e+01 c.1.7.1 98350 1gw5S 142 8.83e+01 d.110.4.2 70633 1m0dA 138 8.87e+01 c.52.1.17 74354 1hztA 190 8.98e+01 1i9aA d.113.1.2 61459